Multiple sequence alignment - TraesCS7D01G064500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G064500 chr7D 100.000 4090 0 0 1 4090 35815371 35819460 0.000000e+00 7553
1 TraesCS7D01G064500 chr7D 91.625 1385 90 12 2712 4080 35858538 35859912 0.000000e+00 1892
2 TraesCS7D01G064500 chr7D 83.264 962 120 24 464 1404 36047782 36048723 0.000000e+00 846
3 TraesCS7D01G064500 chr7D 82.394 568 82 11 2090 2651 36049416 36049971 2.860000e-131 479
4 TraesCS7D01G064500 chr7D 79.876 646 111 13 2060 2698 35857922 35858555 4.820000e-124 455
5 TraesCS7D01G064500 chr7D 78.508 563 96 15 1179 1721 35857103 35857660 3.030000e-91 346
6 TraesCS7D01G064500 chr7D 79.545 220 36 7 2866 3080 622403933 622404148 9.160000e-32 148
7 TraesCS7D01G064500 chr4A 82.698 1416 169 46 2096 3504 687809274 687807928 0.000000e+00 1188
8 TraesCS7D01G064500 chr4A 83.483 1229 144 30 487 1684 687810772 687809572 0.000000e+00 1090
9 TraesCS7D01G064500 chr7A 85.098 510 66 6 2727 3234 35690884 35690383 2.820000e-141 512
10 TraesCS7D01G064500 chr7A 83.099 568 81 11 2090 2651 35691454 35690896 1.700000e-138 503
11 TraesCS7D01G064500 chr7A 78.228 914 105 52 3 887 35693620 35692772 2.200000e-137 499
12 TraesCS7D01G064500 chr7A 81.871 513 77 6 893 1404 35692553 35692056 6.320000e-113 418
13 TraesCS7D01G064500 chr7A 83.838 198 31 1 3891 4088 35678339 35678143 1.940000e-43 187
14 TraesCS7D01G064500 chr7B 83.070 443 58 9 1436 1863 720541056 720541496 1.780000e-103 387
15 TraesCS7D01G064500 chr7B 76.620 355 73 9 2090 2439 720541590 720541939 1.940000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G064500 chr7D 35815371 35819460 4089 False 7553.000000 7553 100.000000 1 4090 1 chr7D.!!$F1 4089
1 TraesCS7D01G064500 chr7D 35857103 35859912 2809 False 897.666667 1892 83.336333 1179 4080 3 chr7D.!!$F3 2901
2 TraesCS7D01G064500 chr7D 36047782 36049971 2189 False 662.500000 846 82.829000 464 2651 2 chr7D.!!$F4 2187
3 TraesCS7D01G064500 chr4A 687807928 687810772 2844 True 1139.000000 1188 83.090500 487 3504 2 chr4A.!!$R1 3017
4 TraesCS7D01G064500 chr7A 35690383 35693620 3237 True 483.000000 512 82.074000 3 3234 4 chr7A.!!$R2 3231
5 TraesCS7D01G064500 chr7B 720541056 720541939 883 False 287.000000 387 79.845000 1436 2439 2 chr7B.!!$F1 1003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 302 0.030638 TTTCACCGAAGCAGCAAAGC 59.969 50.0 0.00 0.00 0.00 3.51 F
558 587 0.035317 AAGCATGAGCACGTGAGGAA 59.965 50.0 22.23 0.91 45.49 3.36 F
990 1247 0.179037 AACTTGCTGCTGAGTGCTGA 60.179 50.0 9.39 0.00 42.27 4.26 F
2168 2769 0.324738 ACGAGAGGCCAGATGGAGAA 60.325 55.0 5.01 0.00 37.39 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 2755 0.034670 GCTTGTTCTCCATCTGGCCT 60.035 55.000 3.32 0.0 34.44 5.19 R
2191 2792 0.037326 TTCGAAAGGAGCTCACGCAT 60.037 50.000 17.19 0.0 39.10 4.73 R
2520 3127 1.134670 GTGAAGCCATAGAAGTCGCCT 60.135 52.381 0.00 0.0 0.00 5.52 R
3235 3852 0.449786 CGGTGAACAGTGTGTTTGCA 59.550 50.000 0.00 0.0 41.28 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.834168 AAACATATGGAACGTGAAGGAAAT 57.166 33.333 7.80 0.00 0.00 2.17
33 34 6.834168 AACATATGGAACGTGAAGGAAATT 57.166 33.333 7.80 0.00 0.00 1.82
34 35 7.931578 AACATATGGAACGTGAAGGAAATTA 57.068 32.000 7.80 0.00 0.00 1.40
37 38 7.280205 ACATATGGAACGTGAAGGAAATTAGAC 59.720 37.037 7.80 0.00 0.00 2.59
46 47 5.998363 GTGAAGGAAATTAGACTCACCACTT 59.002 40.000 0.00 0.00 0.00 3.16
47 48 5.997746 TGAAGGAAATTAGACTCACCACTTG 59.002 40.000 0.00 0.00 0.00 3.16
52 53 6.262273 GGAAATTAGACTCACCACTTGAACAA 59.738 38.462 0.00 0.00 32.21 2.83
56 57 4.192317 AGACTCACCACTTGAACAACTTC 58.808 43.478 0.00 0.00 32.21 3.01
65 66 1.942677 TGAACAACTTCTTCGCCGAA 58.057 45.000 0.00 0.00 0.00 4.30
79 80 1.517832 CCGAATGCGAGGAGGACTT 59.482 57.895 0.00 0.00 40.82 3.01
82 83 1.078143 AATGCGAGGAGGACTTGGC 60.078 57.895 0.00 0.00 0.00 4.52
87 88 1.595993 CGAGGAGGACTTGGCGAAGA 61.596 60.000 16.00 0.00 32.98 2.87
90 91 1.671742 GAGGACTTGGCGAAGACCA 59.328 57.895 26.17 0.00 44.00 4.02
91 92 0.250513 GAGGACTTGGCGAAGACCAT 59.749 55.000 26.17 14.46 44.00 3.55
107 108 6.422100 CGAAGACCATTATCATCTCGACAAAT 59.578 38.462 0.00 0.00 0.00 2.32
115 116 3.145286 TCATCTCGACAAATGGTTTGCA 58.855 40.909 2.54 0.00 44.39 4.08
116 117 3.758023 TCATCTCGACAAATGGTTTGCAT 59.242 39.130 2.54 0.00 44.39 3.96
117 118 3.829886 TCTCGACAAATGGTTTGCATC 57.170 42.857 2.54 0.00 44.39 3.91
118 119 3.145286 TCTCGACAAATGGTTTGCATCA 58.855 40.909 2.54 0.00 44.39 3.07
119 120 3.189080 TCTCGACAAATGGTTTGCATCAG 59.811 43.478 2.54 0.00 44.39 2.90
120 121 1.987770 CGACAAATGGTTTGCATCAGC 59.012 47.619 2.54 0.00 44.39 4.26
138 139 6.567959 CATCAGCATACCATACTCGACATAT 58.432 40.000 0.00 0.00 0.00 1.78
150 151 0.944311 CGACATATCCCCTTTCGGCG 60.944 60.000 0.00 0.00 0.00 6.46
151 152 1.227853 ACATATCCCCTTTCGGCGC 60.228 57.895 0.00 0.00 0.00 6.53
175 176 0.449388 CATGCTTTGCCGAGTTCCTC 59.551 55.000 0.00 0.00 0.00 3.71
177 178 2.391389 GCTTTGCCGAGTTCCTCCG 61.391 63.158 0.00 0.00 0.00 4.63
178 179 1.004918 CTTTGCCGAGTTCCTCCGT 60.005 57.895 0.00 0.00 0.00 4.69
179 180 1.005394 TTTGCCGAGTTCCTCCGTC 60.005 57.895 0.00 0.00 0.00 4.79
180 181 1.750341 TTTGCCGAGTTCCTCCGTCA 61.750 55.000 0.00 0.00 0.00 4.35
181 182 1.541310 TTGCCGAGTTCCTCCGTCAT 61.541 55.000 0.00 0.00 0.00 3.06
182 183 1.227002 GCCGAGTTCCTCCGTCATC 60.227 63.158 0.00 0.00 0.00 2.92
199 201 4.174762 GTCATCTAGTCGGAAACACTTCC 58.825 47.826 0.00 0.00 46.85 3.46
215 217 0.542467 TTCCCTGCCATTGCACATGT 60.542 50.000 0.00 0.00 44.23 3.21
226 228 5.104374 CCATTGCACATGTCCTTGTATTTC 58.896 41.667 0.00 0.00 0.00 2.17
228 230 6.392354 CATTGCACATGTCCTTGTATTTCTT 58.608 36.000 0.00 0.00 0.00 2.52
244 246 1.672356 CTTGGACAGAAGGCGGGTG 60.672 63.158 0.00 0.00 0.00 4.61
247 249 1.218316 GGACAGAAGGCGGGTGTAG 59.782 63.158 0.00 0.00 0.00 2.74
250 252 0.763035 ACAGAAGGCGGGTGTAGTTT 59.237 50.000 0.00 0.00 0.00 2.66
252 254 1.804748 CAGAAGGCGGGTGTAGTTTTC 59.195 52.381 0.00 0.00 0.00 2.29
253 255 1.697982 AGAAGGCGGGTGTAGTTTTCT 59.302 47.619 0.00 0.00 0.00 2.52
254 256 2.105993 AGAAGGCGGGTGTAGTTTTCTT 59.894 45.455 0.00 0.00 0.00 2.52
255 257 2.651382 AGGCGGGTGTAGTTTTCTTT 57.349 45.000 0.00 0.00 0.00 2.52
256 258 2.940158 AGGCGGGTGTAGTTTTCTTTT 58.060 42.857 0.00 0.00 0.00 2.27
297 299 3.407698 TCTATTTTCACCGAAGCAGCAA 58.592 40.909 0.00 0.00 0.00 3.91
299 301 2.490328 TTTTCACCGAAGCAGCAAAG 57.510 45.000 0.00 0.00 0.00 2.77
300 302 0.030638 TTTCACCGAAGCAGCAAAGC 59.969 50.000 0.00 0.00 0.00 3.51
304 306 1.363443 CCGAAGCAGCAAAGCCAAA 59.637 52.632 0.00 0.00 34.23 3.28
306 308 0.854705 CGAAGCAGCAAAGCCAAAAC 59.145 50.000 0.00 0.00 34.23 2.43
308 310 2.278854 GAAGCAGCAAAGCCAAAACAA 58.721 42.857 0.00 0.00 34.23 2.83
309 311 2.625695 AGCAGCAAAGCCAAAACAAT 57.374 40.000 0.00 0.00 34.23 2.71
310 312 2.215196 AGCAGCAAAGCCAAAACAATG 58.785 42.857 0.00 0.00 34.23 2.82
311 313 1.334329 GCAGCAAAGCCAAAACAATGC 60.334 47.619 0.00 0.00 0.00 3.56
313 315 2.355132 CAGCAAAGCCAAAACAATGCAA 59.645 40.909 0.00 0.00 36.30 4.08
315 317 3.633065 AGCAAAGCCAAAACAATGCAAAT 59.367 34.783 0.00 0.00 36.30 2.32
316 318 4.820716 AGCAAAGCCAAAACAATGCAAATA 59.179 33.333 0.00 0.00 36.30 1.40
317 319 5.474189 AGCAAAGCCAAAACAATGCAAATAT 59.526 32.000 0.00 0.00 36.30 1.28
318 320 6.654161 AGCAAAGCCAAAACAATGCAAATATA 59.346 30.769 0.00 0.00 36.30 0.86
319 321 6.962678 GCAAAGCCAAAACAATGCAAATATAG 59.037 34.615 0.00 0.00 34.10 1.31
322 324 6.035843 AGCCAAAACAATGCAAATATAGACG 58.964 36.000 0.00 0.00 0.00 4.18
323 325 6.033341 GCCAAAACAATGCAAATATAGACGA 58.967 36.000 0.00 0.00 0.00 4.20
324 326 6.197096 GCCAAAACAATGCAAATATAGACGAG 59.803 38.462 0.00 0.00 0.00 4.18
325 327 7.471721 CCAAAACAATGCAAATATAGACGAGA 58.528 34.615 0.00 0.00 0.00 4.04
334 357 6.102663 GCAAATATAGACGAGATATGCACCT 58.897 40.000 0.00 0.00 0.00 4.00
361 384 6.018098 GCCACAAATCAACATCATCAACAAAA 60.018 34.615 0.00 0.00 0.00 2.44
362 385 7.346695 CCACAAATCAACATCATCAACAAAAC 58.653 34.615 0.00 0.00 0.00 2.43
366 393 6.653526 ATCAACATCATCAACAAAACTGGA 57.346 33.333 0.00 0.00 0.00 3.86
369 396 7.147312 TCAACATCATCAACAAAACTGGATTC 58.853 34.615 0.00 0.00 0.00 2.52
371 398 8.298854 CAACATCATCAACAAAACTGGATTCTA 58.701 33.333 0.00 0.00 0.00 2.10
373 400 9.028284 ACATCATCAACAAAACTGGATTCTATT 57.972 29.630 0.00 0.00 0.00 1.73
390 417 8.704234 GGATTCTATTGAAATACAGTCGCTAAG 58.296 37.037 0.00 0.00 35.63 2.18
391 418 9.464714 GATTCTATTGAAATACAGTCGCTAAGA 57.535 33.333 0.00 0.00 35.63 2.10
392 419 9.250624 ATTCTATTGAAATACAGTCGCTAAGAC 57.749 33.333 0.00 0.00 41.74 3.01
404 431 1.041437 GCTAAGACGCCCTCTATGGT 58.959 55.000 0.00 0.00 0.00 3.55
412 439 2.091444 ACGCCCTCTATGGTTACTAGGT 60.091 50.000 0.00 0.00 0.00 3.08
419 446 6.264970 CCCTCTATGGTTACTAGGTAAGTCAC 59.735 46.154 0.00 0.00 39.80 3.67
420 447 6.832384 CCTCTATGGTTACTAGGTAAGTCACA 59.168 42.308 0.00 0.00 39.80 3.58
445 472 0.944386 GAGCTCTGCCGTGTTCAAAA 59.056 50.000 6.43 0.00 0.00 2.44
492 519 8.952979 CAATAAATAAATAAATTGCGTGCTCGA 58.047 29.630 13.13 0.00 39.71 4.04
506 533 2.093467 GTGCTCGATCTGACTTTTGAGC 59.907 50.000 10.67 10.67 45.67 4.26
509 536 0.371645 CGATCTGACTTTTGAGCCGC 59.628 55.000 0.00 0.00 0.00 6.53
511 538 0.326264 ATCTGACTTTTGAGCCGCCT 59.674 50.000 0.00 0.00 0.00 5.52
517 545 0.239347 CTTTTGAGCCGCCTGACTTG 59.761 55.000 0.00 0.00 0.00 3.16
536 565 7.651808 TGACTTGGTTTTGAAGATTTCAGATC 58.348 34.615 0.00 0.00 41.38 2.75
558 587 0.035317 AAGCATGAGCACGTGAGGAA 59.965 50.000 22.23 0.91 45.49 3.36
572 601 3.986572 CGTGAGGAAGCATATCATCTCAC 59.013 47.826 10.23 10.23 44.25 3.51
585 614 5.791367 ATCATCTCACGATTTGACTTGTG 57.209 39.130 0.00 0.00 32.66 3.33
608 637 2.027653 GGCTTTGACTTAGTCTCCTGCT 60.028 50.000 13.86 0.00 33.15 4.24
611 640 5.238583 GCTTTGACTTAGTCTCCTGCTTTA 58.761 41.667 13.86 0.00 33.15 1.85
612 641 5.877564 GCTTTGACTTAGTCTCCTGCTTTAT 59.122 40.000 13.86 0.00 33.15 1.40
613 642 7.042335 GCTTTGACTTAGTCTCCTGCTTTATA 58.958 38.462 13.86 0.00 33.15 0.98
614 643 7.010645 GCTTTGACTTAGTCTCCTGCTTTATAC 59.989 40.741 13.86 0.00 33.15 1.47
615 644 7.719871 TTGACTTAGTCTCCTGCTTTATACT 57.280 36.000 13.86 0.00 33.15 2.12
616 645 8.818622 TTGACTTAGTCTCCTGCTTTATACTA 57.181 34.615 13.86 0.00 33.15 1.82
617 646 8.453238 TGACTTAGTCTCCTGCTTTATACTAG 57.547 38.462 13.86 0.00 33.15 2.57
648 679 2.052690 ATGGACGCGTAGGTCTGCT 61.053 57.895 13.97 0.00 37.12 4.24
681 712 0.179150 CACGCACAGGCTACTCTCTC 60.179 60.000 0.00 0.00 38.10 3.20
682 713 0.322997 ACGCACAGGCTACTCTCTCT 60.323 55.000 0.00 0.00 38.10 3.10
685 716 2.031245 CGCACAGGCTACTCTCTCTATG 60.031 54.545 0.00 0.00 38.10 2.23
720 751 1.152830 GGGTTGTTTCCCTCTGCCA 59.847 57.895 0.00 0.00 43.85 4.92
728 759 1.476845 TTCCCTCTGCCAGCACGTAA 61.477 55.000 0.00 0.00 0.00 3.18
849 890 4.933330 TGCCGACTTGATCTGTTCTATAC 58.067 43.478 0.00 0.00 0.00 1.47
850 891 4.645136 TGCCGACTTGATCTGTTCTATACT 59.355 41.667 0.00 0.00 0.00 2.12
851 892 4.979197 GCCGACTTGATCTGTTCTATACTG 59.021 45.833 0.00 0.00 0.00 2.74
852 893 5.450688 GCCGACTTGATCTGTTCTATACTGT 60.451 44.000 0.00 0.00 0.00 3.55
853 894 6.238676 GCCGACTTGATCTGTTCTATACTGTA 60.239 42.308 0.00 0.00 0.00 2.74
889 933 5.538433 AGGGTATCTTGACTAGATCTTGCTC 59.462 44.000 0.00 0.42 42.69 4.26
903 1160 2.094182 TCTTGCTCCATACTTGTCGTCC 60.094 50.000 0.00 0.00 0.00 4.79
916 1173 4.523173 ACTTGTCGTCCTTCATAAGACAGA 59.477 41.667 0.00 0.00 41.90 3.41
920 1177 4.035324 GTCGTCCTTCATAAGACAGATCGA 59.965 45.833 0.00 0.00 32.57 3.59
972 1229 0.606944 AACGCTCGCCATTAACCCAA 60.607 50.000 0.00 0.00 0.00 4.12
975 1232 1.173913 GCTCGCCATTAACCCAACTT 58.826 50.000 0.00 0.00 0.00 2.66
976 1233 1.135402 GCTCGCCATTAACCCAACTTG 60.135 52.381 0.00 0.00 0.00 3.16
977 1234 0.885196 TCGCCATTAACCCAACTTGC 59.115 50.000 0.00 0.00 0.00 4.01
978 1235 0.887933 CGCCATTAACCCAACTTGCT 59.112 50.000 0.00 0.00 0.00 3.91
979 1236 1.402720 CGCCATTAACCCAACTTGCTG 60.403 52.381 0.00 0.00 0.00 4.41
980 1237 1.672737 GCCATTAACCCAACTTGCTGC 60.673 52.381 0.00 0.00 0.00 5.25
981 1238 1.895131 CCATTAACCCAACTTGCTGCT 59.105 47.619 0.00 0.00 0.00 4.24
982 1239 2.353011 CCATTAACCCAACTTGCTGCTG 60.353 50.000 0.00 0.00 0.00 4.41
983 1240 2.356665 TTAACCCAACTTGCTGCTGA 57.643 45.000 0.00 0.00 0.00 4.26
984 1241 1.896220 TAACCCAACTTGCTGCTGAG 58.104 50.000 0.00 1.51 0.00 3.35
990 1247 0.179037 AACTTGCTGCTGAGTGCTGA 60.179 50.000 9.39 0.00 42.27 4.26
1001 1268 3.131223 GCTGAGTGCTGACTAACCATAGA 59.869 47.826 0.00 0.00 38.95 1.98
1011 1278 8.807118 TGCTGACTAACCATAGAATATAAGGAG 58.193 37.037 0.00 0.00 33.15 3.69
1031 1298 3.799753 CCTTGAGGCCGTCGATTG 58.200 61.111 0.00 0.00 0.00 2.67
1037 1304 3.115892 GGCCGTCGATTGCAACGA 61.116 61.111 16.54 16.54 41.29 3.85
1038 1305 2.461110 GGCCGTCGATTGCAACGAT 61.461 57.895 21.14 0.00 41.29 3.73
1043 1310 0.721154 GTCGATTGCAACGATCAGCA 59.279 50.000 21.14 0.81 41.62 4.41
1044 1311 0.721154 TCGATTGCAACGATCAGCAC 59.279 50.000 16.54 0.00 41.05 4.40
1047 1314 1.199789 GATTGCAACGATCAGCACCAA 59.800 47.619 0.00 0.00 41.05 3.67
1055 1322 1.662629 CGATCAGCACCAACAGCTTAG 59.337 52.381 0.00 0.00 41.14 2.18
1058 1325 1.974957 TCAGCACCAACAGCTTAGGTA 59.025 47.619 1.44 0.00 41.14 3.08
1116 1383 3.483665 GCAATGGCGACGCGTGTA 61.484 61.111 20.70 0.00 0.00 2.90
1118 1385 1.713246 CAATGGCGACGCGTGTAAT 59.287 52.632 20.70 1.32 0.00 1.89
1135 1402 3.590466 ATTGTGCTCAGGGTGGGCC 62.590 63.158 0.00 0.00 45.08 5.80
1142 1409 2.612115 CAGGGTGGGCCTCCTCTT 60.612 66.667 23.06 7.67 34.45 2.85
1144 1411 2.285743 GGGTGGGCCTCCTCTTCT 60.286 66.667 23.06 0.00 34.45 2.85
1191 1464 4.796231 CCGTCGTCCCCAAGCTCG 62.796 72.222 0.00 0.00 0.00 5.03
1284 1557 2.359975 GCCCCTCCAAGGAACGTG 60.360 66.667 0.00 0.00 37.67 4.49
1317 1590 2.754658 GAGAGGAAGCGGTCGGGA 60.755 66.667 0.00 0.00 0.00 5.14
1320 1593 2.683933 AGGAAGCGGTCGGGATGT 60.684 61.111 0.00 0.00 0.00 3.06
1322 1595 0.759436 AGGAAGCGGTCGGGATGTAT 60.759 55.000 0.00 0.00 0.00 2.29
1337 1610 4.175337 TATGAGCACCTGCCCCGC 62.175 66.667 0.00 0.00 43.38 6.13
1363 1636 1.750018 CCCCAGCAATGCATCGTCA 60.750 57.895 8.35 0.00 0.00 4.35
1390 1663 1.150827 CGACTGCAAGACATTCTGCA 58.849 50.000 0.00 0.00 37.43 4.41
1409 1723 7.615582 TCTGCAGTAAGTATTCTTTTGGATG 57.384 36.000 14.67 0.00 35.36 3.51
1428 1742 2.911484 TGTGTTGATTTGGTTTTGGGC 58.089 42.857 0.00 0.00 0.00 5.36
1429 1743 2.217750 GTGTTGATTTGGTTTTGGGCC 58.782 47.619 0.00 0.00 0.00 5.80
1432 1746 1.799933 TGATTTGGTTTTGGGCCTGT 58.200 45.000 4.53 0.00 0.00 4.00
1443 1757 5.362430 GGTTTTGGGCCTGTGATGAAATATA 59.638 40.000 4.53 0.00 0.00 0.86
1444 1758 6.461509 GGTTTTGGGCCTGTGATGAAATATAG 60.462 42.308 4.53 0.00 0.00 1.31
1496 1922 3.861263 GTAAAGCCGCCGAAGCCG 61.861 66.667 0.00 0.00 34.57 5.52
1570 1996 1.135689 CAACGCATACTTGCCCAAGAC 60.136 52.381 14.46 1.26 46.57 3.01
1571 1997 0.324943 ACGCATACTTGCCCAAGACT 59.675 50.000 14.46 0.00 46.57 3.24
1616 2042 1.066573 CAGGTCTCCAAATCGAGCAGT 60.067 52.381 0.00 0.00 0.00 4.40
1703 2129 9.171877 CATCATATGCATACTCTCTACTCACTA 57.828 37.037 8.99 0.00 0.00 2.74
1704 2130 9.746457 ATCATATGCATACTCTCTACTCACTAA 57.254 33.333 8.99 0.00 0.00 2.24
1710 2136 6.347888 GCATACTCTCTACTCACTAATCGTCC 60.348 46.154 0.00 0.00 0.00 4.79
1721 2282 8.561738 ACTCACTAATCGTCCATGTTTAATTT 57.438 30.769 0.00 0.00 0.00 1.82
1809 2370 0.687920 TGAACGGTGGGCTCAACATA 59.312 50.000 0.69 0.00 0.00 2.29
1875 2441 3.243839 CCACTGTAAGGCATTGCACTTTT 60.244 43.478 11.39 2.02 39.30 2.27
1901 2487 5.030874 GCAGTTGTGCGAAATAACTAAGT 57.969 39.130 0.00 0.00 38.08 2.24
1917 2518 9.908152 AATAACTAAGTTTTGAAATAGTGTGGC 57.092 29.630 0.00 0.00 0.00 5.01
1918 2519 7.582667 AACTAAGTTTTGAAATAGTGTGGCT 57.417 32.000 0.00 0.00 0.00 4.75
1920 2521 8.324163 ACTAAGTTTTGAAATAGTGTGGCTAG 57.676 34.615 0.00 0.00 32.45 3.42
1922 2523 9.167311 CTAAGTTTTGAAATAGTGTGGCTAGAT 57.833 33.333 0.00 0.00 32.45 1.98
1923 2524 7.617041 AGTTTTGAAATAGTGTGGCTAGATC 57.383 36.000 0.00 0.00 32.45 2.75
1924 2525 7.398024 AGTTTTGAAATAGTGTGGCTAGATCT 58.602 34.615 0.00 0.00 32.45 2.75
1925 2526 7.550906 AGTTTTGAAATAGTGTGGCTAGATCTC 59.449 37.037 0.00 0.00 32.45 2.75
1926 2527 6.544928 TTGAAATAGTGTGGCTAGATCTCA 57.455 37.500 0.00 0.00 32.45 3.27
1927 2528 6.544928 TGAAATAGTGTGGCTAGATCTCAA 57.455 37.500 0.00 0.00 32.45 3.02
1928 2529 7.129457 TGAAATAGTGTGGCTAGATCTCAAT 57.871 36.000 0.00 0.00 32.45 2.57
1929 2530 7.212976 TGAAATAGTGTGGCTAGATCTCAATC 58.787 38.462 0.00 0.00 32.45 2.67
1930 2531 3.724508 AGTGTGGCTAGATCTCAATCG 57.275 47.619 0.00 0.00 36.97 3.34
1931 2532 3.291584 AGTGTGGCTAGATCTCAATCGA 58.708 45.455 0.00 0.00 36.97 3.59
1932 2533 3.894427 AGTGTGGCTAGATCTCAATCGAT 59.106 43.478 0.00 0.00 36.97 3.59
1933 2534 5.073428 AGTGTGGCTAGATCTCAATCGATA 58.927 41.667 0.00 0.00 36.97 2.92
1934 2535 5.714333 AGTGTGGCTAGATCTCAATCGATAT 59.286 40.000 0.00 0.00 36.97 1.63
1935 2536 6.887002 AGTGTGGCTAGATCTCAATCGATATA 59.113 38.462 0.00 0.00 36.97 0.86
1936 2537 7.559533 AGTGTGGCTAGATCTCAATCGATATAT 59.440 37.037 0.00 0.00 36.97 0.86
1937 2538 8.194104 GTGTGGCTAGATCTCAATCGATATATT 58.806 37.037 0.00 0.00 36.97 1.28
1938 2539 8.753133 TGTGGCTAGATCTCAATCGATATATTT 58.247 33.333 0.00 0.00 36.97 1.40
1939 2540 9.593134 GTGGCTAGATCTCAATCGATATATTTT 57.407 33.333 0.00 0.00 36.97 1.82
2000 2601 9.705290 AATATTTAAAATGACAAGAACCCACAC 57.295 29.630 0.00 0.00 0.00 3.82
2001 2602 3.708563 AAAATGACAAGAACCCACACG 57.291 42.857 0.00 0.00 0.00 4.49
2002 2603 2.631160 AATGACAAGAACCCACACGA 57.369 45.000 0.00 0.00 0.00 4.35
2003 2604 2.631160 ATGACAAGAACCCACACGAA 57.369 45.000 0.00 0.00 0.00 3.85
2004 2605 2.631160 TGACAAGAACCCACACGAAT 57.369 45.000 0.00 0.00 0.00 3.34
2005 2606 2.925724 TGACAAGAACCCACACGAATT 58.074 42.857 0.00 0.00 0.00 2.17
2006 2607 4.074627 TGACAAGAACCCACACGAATTA 57.925 40.909 0.00 0.00 0.00 1.40
2007 2608 3.810941 TGACAAGAACCCACACGAATTAC 59.189 43.478 0.00 0.00 0.00 1.89
2008 2609 3.810941 GACAAGAACCCACACGAATTACA 59.189 43.478 0.00 0.00 0.00 2.41
2009 2610 4.200874 ACAAGAACCCACACGAATTACAA 58.799 39.130 0.00 0.00 0.00 2.41
2010 2611 4.035909 ACAAGAACCCACACGAATTACAAC 59.964 41.667 0.00 0.00 0.00 3.32
2011 2612 3.811083 AGAACCCACACGAATTACAACA 58.189 40.909 0.00 0.00 0.00 3.33
2012 2613 4.394729 AGAACCCACACGAATTACAACAT 58.605 39.130 0.00 0.00 0.00 2.71
2013 2614 5.553123 AGAACCCACACGAATTACAACATA 58.447 37.500 0.00 0.00 0.00 2.29
2014 2615 5.642063 AGAACCCACACGAATTACAACATAG 59.358 40.000 0.00 0.00 0.00 2.23
2015 2616 5.155278 ACCCACACGAATTACAACATAGA 57.845 39.130 0.00 0.00 0.00 1.98
2016 2617 5.741011 ACCCACACGAATTACAACATAGAT 58.259 37.500 0.00 0.00 0.00 1.98
2017 2618 6.177610 ACCCACACGAATTACAACATAGATT 58.822 36.000 0.00 0.00 0.00 2.40
2018 2619 7.332557 ACCCACACGAATTACAACATAGATTA 58.667 34.615 0.00 0.00 0.00 1.75
2019 2620 7.494625 ACCCACACGAATTACAACATAGATTAG 59.505 37.037 0.00 0.00 0.00 1.73
2020 2621 7.709182 CCCACACGAATTACAACATAGATTAGA 59.291 37.037 0.00 0.00 0.00 2.10
2021 2622 9.261180 CCACACGAATTACAACATAGATTAGAT 57.739 33.333 0.00 0.00 0.00 1.98
2023 2624 9.261180 ACACGAATTACAACATAGATTAGATGG 57.739 33.333 0.00 0.00 0.00 3.51
2024 2625 9.261180 CACGAATTACAACATAGATTAGATGGT 57.739 33.333 0.00 0.00 0.00 3.55
2025 2626 9.832445 ACGAATTACAACATAGATTAGATGGTT 57.168 29.630 0.00 0.00 0.00 3.67
2051 2652 6.560253 TTAAGAGTTGACTGAAGAAATGGC 57.440 37.500 0.00 0.00 0.00 4.40
2053 2654 4.464008 AGAGTTGACTGAAGAAATGGCAA 58.536 39.130 0.00 0.00 0.00 4.52
2054 2655 4.276926 AGAGTTGACTGAAGAAATGGCAAC 59.723 41.667 3.04 3.04 35.61 4.17
2055 2656 3.319122 AGTTGACTGAAGAAATGGCAACC 59.681 43.478 7.23 0.00 35.90 3.77
2056 2657 2.238521 TGACTGAAGAAATGGCAACCC 58.761 47.619 0.00 0.00 0.00 4.11
2057 2658 2.158475 TGACTGAAGAAATGGCAACCCT 60.158 45.455 0.00 0.00 0.00 4.34
2058 2659 2.229784 GACTGAAGAAATGGCAACCCTG 59.770 50.000 0.00 0.00 0.00 4.45
2059 2660 2.242043 CTGAAGAAATGGCAACCCTGT 58.758 47.619 0.00 0.00 0.00 4.00
2060 2661 2.629617 CTGAAGAAATGGCAACCCTGTT 59.370 45.455 0.00 0.00 0.00 3.16
2061 2662 3.037549 TGAAGAAATGGCAACCCTGTTT 58.962 40.909 0.00 0.00 0.00 2.83
2062 2663 3.181467 TGAAGAAATGGCAACCCTGTTTG 60.181 43.478 0.00 0.00 0.00 2.93
2063 2664 2.676748 AGAAATGGCAACCCTGTTTGA 58.323 42.857 0.00 0.00 0.00 2.69
2064 2665 3.242011 AGAAATGGCAACCCTGTTTGAT 58.758 40.909 0.00 0.00 0.00 2.57
2065 2666 4.415596 AGAAATGGCAACCCTGTTTGATA 58.584 39.130 0.00 0.00 0.00 2.15
2066 2667 5.025453 AGAAATGGCAACCCTGTTTGATAT 58.975 37.500 0.00 0.00 0.00 1.63
2067 2668 6.194235 AGAAATGGCAACCCTGTTTGATATA 58.806 36.000 0.00 0.00 0.00 0.86
2068 2669 6.667414 AGAAATGGCAACCCTGTTTGATATAA 59.333 34.615 0.00 0.00 0.00 0.98
2069 2670 6.469782 AATGGCAACCCTGTTTGATATAAG 57.530 37.500 0.00 0.00 0.00 1.73
2070 2671 5.186256 TGGCAACCCTGTTTGATATAAGA 57.814 39.130 0.00 0.00 0.00 2.10
2071 2672 4.947388 TGGCAACCCTGTTTGATATAAGAC 59.053 41.667 0.00 0.00 0.00 3.01
2072 2673 4.947388 GGCAACCCTGTTTGATATAAGACA 59.053 41.667 0.00 0.00 0.00 3.41
2073 2674 5.594317 GGCAACCCTGTTTGATATAAGACAT 59.406 40.000 0.00 0.00 0.00 3.06
2074 2675 6.460123 GGCAACCCTGTTTGATATAAGACATG 60.460 42.308 0.00 0.00 0.00 3.21
2075 2676 6.318648 GCAACCCTGTTTGATATAAGACATGA 59.681 38.462 0.00 0.00 0.00 3.07
2076 2677 7.148086 GCAACCCTGTTTGATATAAGACATGAA 60.148 37.037 0.00 0.00 0.00 2.57
2077 2678 8.739039 CAACCCTGTTTGATATAAGACATGAAA 58.261 33.333 0.00 0.00 0.00 2.69
2078 2679 8.281212 ACCCTGTTTGATATAAGACATGAAAC 57.719 34.615 0.00 0.00 32.28 2.78
2079 2680 7.065803 ACCCTGTTTGATATAAGACATGAAACG 59.934 37.037 0.00 0.00 33.73 3.60
2080 2681 7.409697 CCTGTTTGATATAAGACATGAAACGG 58.590 38.462 0.00 1.29 36.32 4.44
2081 2682 7.315247 TGTTTGATATAAGACATGAAACGGG 57.685 36.000 0.00 0.00 33.73 5.28
2082 2683 6.317642 TGTTTGATATAAGACATGAAACGGGG 59.682 38.462 0.00 0.00 33.73 5.73
2083 2684 4.968259 TGATATAAGACATGAAACGGGGG 58.032 43.478 0.00 0.00 0.00 5.40
2084 2685 4.656575 TGATATAAGACATGAAACGGGGGA 59.343 41.667 0.00 0.00 0.00 4.81
2085 2686 5.309543 TGATATAAGACATGAAACGGGGGAT 59.690 40.000 0.00 0.00 0.00 3.85
2086 2687 2.899303 AAGACATGAAACGGGGGATT 57.101 45.000 0.00 0.00 0.00 3.01
2087 2688 2.899303 AGACATGAAACGGGGGATTT 57.101 45.000 0.00 0.00 0.00 2.17
2088 2689 2.723273 AGACATGAAACGGGGGATTTC 58.277 47.619 0.00 0.00 36.73 2.17
2118 2719 2.666272 ATGGAGAGCGGTCTATCTCA 57.334 50.000 18.63 13.52 43.11 3.27
2137 2738 3.313524 TGCCGAAGCAGCTGGAGA 61.314 61.111 17.12 0.00 46.52 3.71
2142 2743 1.517242 CGAAGCAGCTGGAGAACTTT 58.483 50.000 17.12 0.00 0.00 2.66
2154 2755 3.893200 TGGAGAACTTTAAGGTGACGAGA 59.107 43.478 0.00 0.00 0.00 4.04
2156 2757 4.487019 GAGAACTTTAAGGTGACGAGAGG 58.513 47.826 0.00 0.00 0.00 3.69
2167 2768 0.753479 GACGAGAGGCCAGATGGAGA 60.753 60.000 5.01 0.00 37.39 3.71
2168 2769 0.324738 ACGAGAGGCCAGATGGAGAA 60.325 55.000 5.01 0.00 37.39 2.87
2215 2816 1.000955 GTGAGCTCCTTTCGAAGTCCA 59.999 52.381 12.15 0.00 0.00 4.02
2247 2848 3.402681 ATCGGTGGCCAGGACCTG 61.403 66.667 15.15 15.15 0.00 4.00
2403 3004 2.035469 ATCGGTTGCATGCCACCA 59.965 55.556 33.13 22.80 0.00 4.17
2439 3046 1.444553 CGACCAGAGCCTGAACGAC 60.445 63.158 4.00 0.00 34.22 4.34
2442 3049 0.468226 ACCAGAGCCTGAACGACAAA 59.532 50.000 4.00 0.00 32.44 2.83
2457 3064 2.358247 AAAGCCACCGCGTTCGAT 60.358 55.556 4.92 0.00 41.18 3.59
2511 3118 1.544825 CCAAGAAGTCGGGCCTCTCA 61.545 60.000 0.84 0.00 0.00 3.27
2520 3127 1.427753 TCGGGCCTCTCATACTCCATA 59.572 52.381 0.84 0.00 0.00 2.74
2636 3243 7.961351 TCTGTTGAAAATTAACCAATCACCAT 58.039 30.769 0.00 0.00 0.00 3.55
2651 3258 6.218019 CAATCACCATTGCCATATTTACCAG 58.782 40.000 0.00 0.00 33.19 4.00
2689 3300 5.063880 AGCCGAATTCCATTATCTACCAAC 58.936 41.667 0.00 0.00 0.00 3.77
2690 3301 4.819630 GCCGAATTCCATTATCTACCAACA 59.180 41.667 0.00 0.00 0.00 3.33
2691 3302 5.277828 GCCGAATTCCATTATCTACCAACAC 60.278 44.000 0.00 0.00 0.00 3.32
2692 3303 5.820423 CCGAATTCCATTATCTACCAACACA 59.180 40.000 0.00 0.00 0.00 3.72
2693 3304 6.238374 CCGAATTCCATTATCTACCAACACAC 60.238 42.308 0.00 0.00 0.00 3.82
2694 3305 6.315144 CGAATTCCATTATCTACCAACACACA 59.685 38.462 0.00 0.00 0.00 3.72
2695 3306 7.012327 CGAATTCCATTATCTACCAACACACAT 59.988 37.037 0.00 0.00 0.00 3.21
2696 3307 7.572523 ATTCCATTATCTACCAACACACATG 57.427 36.000 0.00 0.00 0.00 3.21
2697 3308 6.061022 TCCATTATCTACCAACACACATGT 57.939 37.500 0.00 0.00 42.46 3.21
2746 3357 9.075519 CACACATGTGTCCAATATTCATTAAAC 57.924 33.333 28.38 0.00 42.83 2.01
2748 3359 9.859427 CACATGTGTCCAATATTCATTAAACTT 57.141 29.630 18.03 0.00 0.00 2.66
2805 3416 2.187958 TGTGCAGGGCTAGTGAATACT 58.812 47.619 0.00 0.00 40.99 2.12
2856 3467 2.165845 GGACTGGACGTACTGCTACAAT 59.834 50.000 4.31 0.00 0.00 2.71
2883 3494 1.061546 GTTACTGGTTCTGGGACCCA 58.938 55.000 14.08 14.08 39.01 4.51
3080 3692 7.940850 AGCAACCGAAATATGCAATAAGTATT 58.059 30.769 0.00 0.00 42.45 1.89
3081 3693 8.413229 AGCAACCGAAATATGCAATAAGTATTT 58.587 29.630 0.00 0.00 42.45 1.40
3164 3780 5.422650 ACTCCTACTGATCTTCTTTGTACCC 59.577 44.000 0.00 0.00 0.00 3.69
3166 3782 2.973945 ACTGATCTTCTTTGTACCCGC 58.026 47.619 0.00 0.00 0.00 6.13
3218 3835 0.527565 CTTCCGGCAATGGACAAAGG 59.472 55.000 0.00 0.00 37.89 3.11
3231 3848 7.276438 GCAATGGACAAAGGAAATTATCTTGAC 59.724 37.037 0.00 0.00 0.00 3.18
3235 3852 6.371825 GGACAAAGGAAATTATCTTGACGACT 59.628 38.462 0.00 0.00 0.00 4.18
3246 3863 1.665679 CTTGACGACTGCAAACACACT 59.334 47.619 0.00 0.00 0.00 3.55
3253 3870 1.472480 ACTGCAAACACACTGTTCACC 59.528 47.619 0.00 0.00 40.14 4.02
3269 3886 6.128282 ACTGTTCACCGCAGTATAGATTTTTG 60.128 38.462 0.00 0.00 44.41 2.44
3324 3948 1.655372 TCACCTGGGTCATCACATGA 58.345 50.000 0.00 0.00 36.84 3.07
3360 3984 4.835615 ACTATCGCCCTTCTGTGAGATAAT 59.164 41.667 0.00 0.00 0.00 1.28
3373 3997 7.203218 TCTGTGAGATAATGAGAATAACGGTG 58.797 38.462 0.00 0.00 0.00 4.94
3402 4026 7.800015 AAACTAAACTAACAACACAAAACCG 57.200 32.000 0.00 0.00 0.00 4.44
3412 4036 1.607148 ACACAAAACCGAGCTAAAGCC 59.393 47.619 0.00 0.00 43.38 4.35
3466 4092 6.292389 GCAAATACTAAGCGAGACAATGAT 57.708 37.500 0.00 0.00 0.00 2.45
3519 4145 9.703892 ATTTGAACATGATCTACTATGTAGAGC 57.296 33.333 13.91 13.91 36.56 4.09
3528 4154 9.225436 TGATCTACTATGTAGAGCATGTTAGAG 57.775 37.037 18.00 0.00 35.36 2.43
3530 4156 7.746703 TCTACTATGTAGAGCATGTTAGAGGA 58.253 38.462 3.59 0.00 38.47 3.71
3533 4159 5.939764 ATGTAGAGCATGTTAGAGGACAA 57.060 39.130 0.00 0.00 36.26 3.18
3556 4185 4.003648 AGCTAAAAGACCGAACAGATTGG 58.996 43.478 0.00 0.00 0.00 3.16
3559 4188 5.278315 GCTAAAAGACCGAACAGATTGGTTT 60.278 40.000 0.00 0.00 35.75 3.27
3587 4216 8.743099 GTTCTTCGGTTTTAAAGAAACTTGATG 58.257 33.333 0.00 3.97 41.70 3.07
3589 4218 9.111613 TCTTCGGTTTTAAAGAAACTTGATGTA 57.888 29.630 2.18 0.00 0.00 2.29
3632 4261 7.402054 TCAGTTTATAACACATCAAGGACCAT 58.598 34.615 0.00 0.00 0.00 3.55
3636 4265 9.705290 GTTTATAACACATCAAGGACCATTTTT 57.295 29.630 0.00 0.00 0.00 1.94
3637 4266 9.921637 TTTATAACACATCAAGGACCATTTTTC 57.078 29.630 0.00 0.00 0.00 2.29
3648 4277 4.517832 AGGACCATTTTTCGTAGAACCAAC 59.482 41.667 0.00 0.00 45.90 3.77
3668 4297 6.578023 CCAACATTTTGGTTAAGTTCTTGGA 58.422 36.000 2.21 0.00 46.63 3.53
3708 4337 6.809869 TCACATAGATTCAGATCACAATCGT 58.190 36.000 9.73 2.29 36.97 3.73
3710 4339 6.922407 CACATAGATTCAGATCACAATCGTCT 59.078 38.462 9.73 1.02 36.97 4.18
3711 4340 8.078596 CACATAGATTCAGATCACAATCGTCTA 58.921 37.037 9.73 2.79 36.97 2.59
3718 4347 9.770097 ATTCAGATCACAATCGTCTATAAATGT 57.230 29.630 0.00 0.00 36.97 2.71
3755 4384 7.256494 TGCCAAGAATTCCTTATTTTCCATT 57.744 32.000 0.65 0.00 32.86 3.16
3785 4414 6.389830 TGACAAGCAATAGAAGCAAAAGAA 57.610 33.333 0.00 0.00 0.00 2.52
3786 4415 6.985117 TGACAAGCAATAGAAGCAAAAGAAT 58.015 32.000 0.00 0.00 0.00 2.40
3787 4416 6.864685 TGACAAGCAATAGAAGCAAAAGAATG 59.135 34.615 0.00 0.00 0.00 2.67
3919 4548 5.421212 TTGCATTGCAGGAATTTGAAAAC 57.579 34.783 11.76 0.00 40.61 2.43
3920 4549 4.449131 TGCATTGCAGGAATTTGAAAACA 58.551 34.783 7.38 0.00 33.32 2.83
3921 4550 5.064558 TGCATTGCAGGAATTTGAAAACAT 58.935 33.333 7.38 0.00 33.32 2.71
4020 4649 2.560119 GGTGCGTTTGGATGGTGCA 61.560 57.895 0.00 0.00 0.00 4.57
4073 4706 6.258354 ACCGAGGAGAGAGAGTATATAGAGA 58.742 44.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.722795 TCACGTTCCATATGTTTATACATGG 57.277 36.000 8.85 4.63 44.56 3.66
9 10 6.834168 ATTTCCTTCACGTTCCATATGTTT 57.166 33.333 1.24 0.00 0.00 2.83
15 16 5.805728 AGTCTAATTTCCTTCACGTTCCAT 58.194 37.500 0.00 0.00 0.00 3.41
17 18 5.120363 GTGAGTCTAATTTCCTTCACGTTCC 59.880 44.000 0.00 0.00 0.00 3.62
21 22 4.389077 GTGGTGAGTCTAATTTCCTTCACG 59.611 45.833 0.00 0.00 36.64 4.35
23 24 5.825593 AGTGGTGAGTCTAATTTCCTTCA 57.174 39.130 0.00 0.00 0.00 3.02
32 33 5.353394 AGTTGTTCAAGTGGTGAGTCTAA 57.647 39.130 0.00 0.00 37.61 2.10
33 34 5.128827 AGAAGTTGTTCAAGTGGTGAGTCTA 59.871 40.000 0.00 0.00 37.61 2.59
34 35 3.914426 AGTTGTTCAAGTGGTGAGTCT 57.086 42.857 0.00 0.00 37.61 3.24
37 38 4.260375 CGAAGAAGTTGTTCAAGTGGTGAG 60.260 45.833 12.72 0.00 37.61 3.51
46 47 1.942677 TTCGGCGAAGAAGTTGTTCA 58.057 45.000 19.83 0.00 34.82 3.18
47 48 2.839474 CATTCGGCGAAGAAGTTGTTC 58.161 47.619 27.35 2.68 33.19 3.18
65 66 2.586792 GCCAAGTCCTCCTCGCAT 59.413 61.111 0.00 0.00 0.00 4.73
69 70 0.108567 GTCTTCGCCAAGTCCTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
79 80 3.552890 CGAGATGATAATGGTCTTCGCCA 60.553 47.826 0.00 0.00 43.48 5.69
82 83 4.860072 TGTCGAGATGATAATGGTCTTCG 58.140 43.478 0.00 0.00 0.00 3.79
90 91 6.095300 TGCAAACCATTTGTCGAGATGATAAT 59.905 34.615 3.44 0.00 42.56 1.28
91 92 5.414144 TGCAAACCATTTGTCGAGATGATAA 59.586 36.000 3.44 0.00 42.56 1.75
115 116 6.183360 GGATATGTCGAGTATGGTATGCTGAT 60.183 42.308 0.00 0.00 0.00 2.90
116 117 5.125578 GGATATGTCGAGTATGGTATGCTGA 59.874 44.000 0.00 0.00 0.00 4.26
117 118 5.344066 GGATATGTCGAGTATGGTATGCTG 58.656 45.833 0.00 0.00 0.00 4.41
118 119 4.402793 GGGATATGTCGAGTATGGTATGCT 59.597 45.833 0.00 0.00 0.00 3.79
119 120 4.441634 GGGGATATGTCGAGTATGGTATGC 60.442 50.000 0.00 0.00 0.00 3.14
120 121 4.956700 AGGGGATATGTCGAGTATGGTATG 59.043 45.833 0.00 0.00 0.00 2.39
121 122 5.208294 AGGGGATATGTCGAGTATGGTAT 57.792 43.478 0.00 0.00 0.00 2.73
125 126 4.486090 CGAAAGGGGATATGTCGAGTATG 58.514 47.826 0.00 0.00 33.63 2.39
126 127 4.785511 CGAAAGGGGATATGTCGAGTAT 57.214 45.455 0.00 0.00 33.63 2.12
169 170 2.759538 CGACTAGATGACGGAGGAAC 57.240 55.000 0.00 0.00 0.00 3.62
177 178 4.174762 GGAAGTGTTTCCGACTAGATGAC 58.825 47.826 0.00 0.00 43.27 3.06
178 179 4.451629 GGAAGTGTTTCCGACTAGATGA 57.548 45.455 0.00 0.00 43.27 2.92
189 191 1.337167 GCAATGGCAGGGAAGTGTTTC 60.337 52.381 0.00 0.00 40.72 2.78
202 204 0.604578 ACAAGGACATGTGCAATGGC 59.395 50.000 20.21 9.17 41.68 4.40
203 205 4.724074 AATACAAGGACATGTGCAATGG 57.276 40.909 20.21 7.93 34.75 3.16
215 217 5.560724 CCTTCTGTCCAAGAAATACAAGGA 58.439 41.667 0.00 0.00 44.38 3.36
226 228 1.672356 CACCCGCCTTCTGTCCAAG 60.672 63.158 0.00 0.00 0.00 3.61
228 230 1.534476 TACACCCGCCTTCTGTCCA 60.534 57.895 0.00 0.00 0.00 4.02
270 272 7.148086 TGCTGCTTCGGTGAAAATAGATAAATT 60.148 33.333 0.00 0.00 0.00 1.82
277 279 3.829886 TTGCTGCTTCGGTGAAAATAG 57.170 42.857 0.00 0.00 0.00 1.73
278 280 3.611530 GCTTTGCTGCTTCGGTGAAAATA 60.612 43.478 0.00 0.00 0.00 1.40
279 281 2.863704 GCTTTGCTGCTTCGGTGAAAAT 60.864 45.455 0.00 0.00 0.00 1.82
280 282 1.535860 GCTTTGCTGCTTCGGTGAAAA 60.536 47.619 0.00 0.00 0.00 2.29
284 286 2.074230 TTGGCTTTGCTGCTTCGGTG 62.074 55.000 0.00 0.00 0.00 4.94
286 288 0.249405 TTTTGGCTTTGCTGCTTCGG 60.249 50.000 0.00 0.00 0.00 4.30
290 292 2.215196 CATTGTTTTGGCTTTGCTGCT 58.785 42.857 0.00 0.00 0.00 4.24
297 299 6.531240 CGTCTATATTTGCATTGTTTTGGCTT 59.469 34.615 0.00 0.00 0.00 4.35
299 301 6.033341 TCGTCTATATTTGCATTGTTTTGGC 58.967 36.000 0.00 0.00 0.00 4.52
300 302 7.471721 TCTCGTCTATATTTGCATTGTTTTGG 58.528 34.615 0.00 0.00 0.00 3.28
304 306 8.446273 GCATATCTCGTCTATATTTGCATTGTT 58.554 33.333 0.00 0.00 30.78 2.83
306 308 7.901889 GTGCATATCTCGTCTATATTTGCATTG 59.098 37.037 0.00 0.00 38.94 2.82
308 310 6.536582 GGTGCATATCTCGTCTATATTTGCAT 59.463 38.462 0.00 0.00 38.94 3.96
309 311 5.869344 GGTGCATATCTCGTCTATATTTGCA 59.131 40.000 0.00 0.00 35.93 4.08
310 312 6.102663 AGGTGCATATCTCGTCTATATTTGC 58.897 40.000 0.00 0.00 0.00 3.68
311 313 7.433719 GCTAGGTGCATATCTCGTCTATATTTG 59.566 40.741 0.00 0.00 42.31 2.32
313 315 6.039941 GGCTAGGTGCATATCTCGTCTATATT 59.960 42.308 0.00 0.00 45.15 1.28
315 317 4.882427 GGCTAGGTGCATATCTCGTCTATA 59.118 45.833 0.00 0.00 45.15 1.31
316 318 3.697045 GGCTAGGTGCATATCTCGTCTAT 59.303 47.826 0.00 0.00 45.15 1.98
317 319 3.082548 GGCTAGGTGCATATCTCGTCTA 58.917 50.000 0.00 0.00 45.15 2.59
318 320 1.889829 GGCTAGGTGCATATCTCGTCT 59.110 52.381 0.00 0.00 45.15 4.18
319 321 1.613925 TGGCTAGGTGCATATCTCGTC 59.386 52.381 0.00 0.00 45.15 4.20
322 324 3.475566 TTGTGGCTAGGTGCATATCTC 57.524 47.619 0.00 0.00 45.15 2.75
323 325 3.931907 TTTGTGGCTAGGTGCATATCT 57.068 42.857 0.00 0.00 45.15 1.98
324 326 4.136796 TGATTTGTGGCTAGGTGCATATC 58.863 43.478 0.00 0.00 45.15 1.63
325 327 4.169059 TGATTTGTGGCTAGGTGCATAT 57.831 40.909 0.00 0.00 45.15 1.78
334 357 5.476254 TGTTGATGATGTTGATTTGTGGCTA 59.524 36.000 0.00 0.00 0.00 3.93
361 384 6.480320 GCGACTGTATTTCAATAGAATCCAGT 59.520 38.462 0.00 0.00 38.20 4.00
362 385 6.703607 AGCGACTGTATTTCAATAGAATCCAG 59.296 38.462 0.00 0.00 32.89 3.86
366 393 9.250624 GTCTTAGCGACTGTATTTCAATAGAAT 57.749 33.333 0.00 0.00 39.61 2.40
369 396 6.345093 GCGTCTTAGCGACTGTATTTCAATAG 60.345 42.308 0.00 0.00 40.59 1.73
371 398 4.267928 GCGTCTTAGCGACTGTATTTCAAT 59.732 41.667 0.00 0.00 40.59 2.57
373 400 3.176708 GCGTCTTAGCGACTGTATTTCA 58.823 45.455 0.00 0.00 40.59 2.69
379 406 1.935327 GAGGGCGTCTTAGCGACTGT 61.935 60.000 0.00 0.00 40.59 3.55
382 409 0.953003 ATAGAGGGCGTCTTAGCGAC 59.047 55.000 15.66 0.00 39.56 5.19
383 410 0.952280 CATAGAGGGCGTCTTAGCGA 59.048 55.000 15.66 0.00 36.64 4.93
384 411 0.039074 CCATAGAGGGCGTCTTAGCG 60.039 60.000 15.66 1.94 36.64 4.26
390 417 2.557490 CCTAGTAACCATAGAGGGCGTC 59.443 54.545 0.00 0.00 43.89 5.19
391 418 2.091444 ACCTAGTAACCATAGAGGGCGT 60.091 50.000 0.00 0.00 43.89 5.68
392 419 2.595238 ACCTAGTAACCATAGAGGGCG 58.405 52.381 0.00 0.00 43.89 6.13
419 446 1.301244 ACGGCAGAGCTCACAACTG 60.301 57.895 17.77 5.99 35.14 3.16
420 447 1.301244 CACGGCAGAGCTCACAACT 60.301 57.895 17.77 0.00 0.00 3.16
465 492 8.742188 CGAGCACGCAATTTATTTATTTATTGT 58.258 29.630 0.00 0.00 32.10 2.71
466 493 8.952979 TCGAGCACGCAATTTATTTATTTATTG 58.047 29.630 0.00 0.00 39.58 1.90
467 494 9.677567 ATCGAGCACGCAATTTATTTATTTATT 57.322 25.926 0.00 0.00 39.58 1.40
468 495 9.329913 GATCGAGCACGCAATTTATTTATTTAT 57.670 29.630 0.00 0.00 39.58 1.40
469 496 8.556194 AGATCGAGCACGCAATTTATTTATTTA 58.444 29.630 2.38 0.00 39.58 1.40
470 497 7.376866 CAGATCGAGCACGCAATTTATTTATTT 59.623 33.333 2.38 0.00 39.58 1.40
471 498 6.852853 CAGATCGAGCACGCAATTTATTTATT 59.147 34.615 2.38 0.00 39.58 1.40
472 499 6.202762 TCAGATCGAGCACGCAATTTATTTAT 59.797 34.615 2.38 0.00 39.58 1.40
473 500 5.522097 TCAGATCGAGCACGCAATTTATTTA 59.478 36.000 2.38 0.00 39.58 1.40
474 501 4.332543 TCAGATCGAGCACGCAATTTATTT 59.667 37.500 2.38 0.00 39.58 1.40
475 502 3.871006 TCAGATCGAGCACGCAATTTATT 59.129 39.130 2.38 0.00 39.58 1.40
476 503 3.246226 GTCAGATCGAGCACGCAATTTAT 59.754 43.478 2.38 0.00 39.58 1.40
477 504 2.603110 GTCAGATCGAGCACGCAATTTA 59.397 45.455 2.38 0.00 39.58 1.40
478 505 1.394917 GTCAGATCGAGCACGCAATTT 59.605 47.619 2.38 0.00 39.58 1.82
479 506 1.002366 GTCAGATCGAGCACGCAATT 58.998 50.000 2.38 0.00 39.58 2.32
480 507 0.174389 AGTCAGATCGAGCACGCAAT 59.826 50.000 2.38 0.00 39.58 3.56
481 508 0.038251 AAGTCAGATCGAGCACGCAA 60.038 50.000 2.38 0.00 39.58 4.85
482 509 0.038251 AAAGTCAGATCGAGCACGCA 60.038 50.000 2.38 0.00 39.58 5.24
483 510 1.071605 AAAAGTCAGATCGAGCACGC 58.928 50.000 2.38 0.00 39.58 5.34
484 511 2.328473 TCAAAAGTCAGATCGAGCACG 58.672 47.619 2.38 0.00 41.26 5.34
485 512 2.093467 GCTCAAAAGTCAGATCGAGCAC 59.907 50.000 2.38 0.00 44.10 4.40
489 516 1.996292 CGGCTCAAAAGTCAGATCGA 58.004 50.000 0.00 0.00 0.00 3.59
492 519 0.326264 AGGCGGCTCAAAAGTCAGAT 59.674 50.000 5.25 0.00 0.00 2.90
506 533 1.001378 CTTCAAAACCAAGTCAGGCGG 60.001 52.381 0.00 0.00 0.00 6.13
509 536 6.039717 TCTGAAATCTTCAAAACCAAGTCAGG 59.960 38.462 0.00 0.00 39.58 3.86
511 538 7.503566 AGATCTGAAATCTTCAAAACCAAGTCA 59.496 33.333 0.00 0.00 39.58 3.41
517 545 6.805760 GCTTGAGATCTGAAATCTTCAAAACC 59.194 38.462 0.00 0.00 39.58 3.27
572 601 3.250762 TCAAAGCCTCACAAGTCAAATCG 59.749 43.478 0.00 0.00 0.00 3.34
585 614 3.855858 CAGGAGACTAAGTCAAAGCCTC 58.144 50.000 0.00 0.00 40.21 4.70
611 640 7.545965 GCGTCCATGCTTTCATAATACTAGTAT 59.454 37.037 9.71 9.71 0.00 2.12
612 641 6.866770 GCGTCCATGCTTTCATAATACTAGTA 59.133 38.462 4.77 4.77 0.00 1.82
613 642 5.696724 GCGTCCATGCTTTCATAATACTAGT 59.303 40.000 0.00 0.00 0.00 2.57
614 643 5.164051 CGCGTCCATGCTTTCATAATACTAG 60.164 44.000 0.00 0.00 0.00 2.57
615 644 4.684242 CGCGTCCATGCTTTCATAATACTA 59.316 41.667 0.00 0.00 0.00 1.82
616 645 3.494626 CGCGTCCATGCTTTCATAATACT 59.505 43.478 0.00 0.00 0.00 2.12
617 646 3.247648 ACGCGTCCATGCTTTCATAATAC 59.752 43.478 5.58 0.00 0.00 1.89
620 649 1.732941 ACGCGTCCATGCTTTCATAA 58.267 45.000 5.58 0.00 0.00 1.90
623 652 0.739462 CCTACGCGTCCATGCTTTCA 60.739 55.000 18.63 0.00 0.00 2.69
624 653 0.739813 ACCTACGCGTCCATGCTTTC 60.740 55.000 18.63 0.00 0.00 2.62
648 679 2.261361 CGTGTGATCGGGCTGACA 59.739 61.111 0.00 0.00 0.00 3.58
681 712 5.061853 CCCATGGATGAACTGAAGACATAG 58.938 45.833 15.22 0.00 0.00 2.23
682 713 4.474651 ACCCATGGATGAACTGAAGACATA 59.525 41.667 15.22 0.00 0.00 2.29
685 716 3.356529 ACCCATGGATGAACTGAAGAC 57.643 47.619 15.22 0.00 0.00 3.01
720 751 1.344763 AGCTGGAGACTTTTACGTGCT 59.655 47.619 0.00 0.00 0.00 4.40
728 759 1.602311 CAACTGCAGCTGGAGACTTT 58.398 50.000 37.98 21.11 36.93 2.66
773 804 1.182385 GCCTCGGGGTCAGGATAGAG 61.182 65.000 1.62 0.00 31.91 2.43
775 806 1.457643 TGCCTCGGGGTCAGGATAG 60.458 63.158 1.62 0.00 31.91 2.08
867 908 5.303078 TGGAGCAAGATCTAGTCAAGATACC 59.697 44.000 0.00 0.00 45.35 2.73
877 921 5.218885 CGACAAGTATGGAGCAAGATCTAG 58.781 45.833 0.00 0.00 0.00 2.43
880 924 3.786635 ACGACAAGTATGGAGCAAGATC 58.213 45.455 0.00 0.00 0.00 2.75
889 933 5.749109 GTCTTATGAAGGACGACAAGTATGG 59.251 44.000 0.00 0.00 0.00 2.74
903 1160 7.129622 GTGAGTAGTCGATCTGTCTTATGAAG 58.870 42.308 0.00 0.00 0.00 3.02
916 1173 2.497675 ACCAGCAATGTGAGTAGTCGAT 59.502 45.455 0.00 0.00 0.00 3.59
920 1177 1.066858 CGGACCAGCAATGTGAGTAGT 60.067 52.381 0.00 0.00 0.00 2.73
979 1236 2.393271 ATGGTTAGTCAGCACTCAGC 57.607 50.000 0.00 0.00 46.19 4.26
980 1237 4.991153 TCTATGGTTAGTCAGCACTCAG 57.009 45.455 0.00 0.00 35.09 3.35
981 1238 5.939764 ATTCTATGGTTAGTCAGCACTCA 57.060 39.130 0.00 0.00 35.09 3.41
982 1239 9.632807 CTTATATTCTATGGTTAGTCAGCACTC 57.367 37.037 0.00 0.00 35.09 3.51
983 1240 8.589338 CCTTATATTCTATGGTTAGTCAGCACT 58.411 37.037 0.00 0.00 35.09 4.40
984 1241 8.585881 TCCTTATATTCTATGGTTAGTCAGCAC 58.414 37.037 0.00 0.00 35.09 4.40
990 1247 8.180844 AGGCTCTCCTTATATTCTATGGTTAGT 58.819 37.037 0.00 0.00 40.66 2.24
1030 1297 0.817229 TGTTGGTGCTGATCGTTGCA 60.817 50.000 4.14 4.14 36.79 4.08
1031 1298 0.110056 CTGTTGGTGCTGATCGTTGC 60.110 55.000 0.00 0.00 0.00 4.17
1037 1304 1.352352 ACCTAAGCTGTTGGTGCTGAT 59.648 47.619 4.95 0.00 41.03 2.90
1038 1305 0.764890 ACCTAAGCTGTTGGTGCTGA 59.235 50.000 4.95 0.00 41.03 4.26
1085 1352 1.945394 CCATTGCTGCTGCTACCTAAG 59.055 52.381 17.00 0.37 40.48 2.18
1086 1353 2.018644 GCCATTGCTGCTGCTACCTAA 61.019 52.381 17.00 2.48 40.48 2.69
1087 1354 0.464373 GCCATTGCTGCTGCTACCTA 60.464 55.000 17.00 0.00 40.48 3.08
1090 1357 2.108514 TCGCCATTGCTGCTGCTAC 61.109 57.895 17.00 1.14 40.48 3.58
1092 1359 3.437795 GTCGCCATTGCTGCTGCT 61.438 61.111 17.00 0.00 40.48 4.24
1108 1375 0.790207 CTGAGCACAATTACACGCGT 59.210 50.000 5.58 5.58 0.00 6.01
1109 1376 0.095245 CCTGAGCACAATTACACGCG 59.905 55.000 3.53 3.53 0.00 6.01
1116 1383 1.607467 GCCCACCCTGAGCACAATT 60.607 57.895 0.00 0.00 0.00 2.32
1118 1385 4.284550 GGCCCACCCTGAGCACAA 62.285 66.667 0.00 0.00 0.00 3.33
1135 1402 0.177604 ATCGCCAGCAAGAAGAGGAG 59.822 55.000 0.00 0.00 0.00 3.69
1142 1409 2.125552 CCGACATCGCCAGCAAGA 60.126 61.111 0.00 0.00 38.18 3.02
1163 1430 3.004354 ACGACGGGTATTGGGCCA 61.004 61.111 0.00 0.00 0.00 5.36
1167 1434 1.901654 TTGGGGACGACGGGTATTGG 61.902 60.000 0.00 0.00 0.00 3.16
1191 1464 1.289380 GGATGGATACGAGTCCGGC 59.711 63.158 0.00 0.00 41.35 6.13
1249 1522 2.041405 GACCTCCCCCTCCTCCTG 60.041 72.222 0.00 0.00 0.00 3.86
1268 1541 1.003718 GTCACGTTCCTTGGAGGGG 60.004 63.158 0.00 0.00 35.59 4.79
1284 1557 1.216710 CTCGGAGTCCTTGCAGGTC 59.783 63.158 7.77 0.00 36.53 3.85
1302 1575 1.389609 TACATCCCGACCGCTTCCTC 61.390 60.000 0.00 0.00 0.00 3.71
1303 1576 0.759436 ATACATCCCGACCGCTTCCT 60.759 55.000 0.00 0.00 0.00 3.36
1312 1585 0.752658 CAGGTGCTCATACATCCCGA 59.247 55.000 0.00 0.00 0.00 5.14
1317 1590 1.533711 GGGGCAGGTGCTCATACAT 59.466 57.895 3.82 0.00 45.20 2.29
1320 1593 4.175337 GCGGGGCAGGTGCTCATA 62.175 66.667 3.82 0.00 45.20 2.15
1363 1636 2.270205 CTTGCAGTCGGGGCAGAT 59.730 61.111 0.00 0.00 43.05 2.90
1390 1663 8.918202 TCAACACATCCAAAAGAATACTTACT 57.082 30.769 0.00 0.00 35.05 2.24
1409 1723 2.158827 AGGCCCAAAACCAAATCAACAC 60.159 45.455 0.00 0.00 0.00 3.32
1418 1732 0.187117 TCATCACAGGCCCAAAACCA 59.813 50.000 0.00 0.00 0.00 3.67
1428 1742 6.147581 GCATTGTGCTATATTTCATCACAGG 58.852 40.000 0.00 0.00 40.96 4.00
1429 1743 6.731164 TGCATTGTGCTATATTTCATCACAG 58.269 36.000 3.41 0.00 45.31 3.66
1432 1746 7.279750 ACATGCATTGTGCTATATTTCATCA 57.720 32.000 0.00 0.00 45.31 3.07
1472 1895 2.263540 GGCGGCTTTACCTCGTCA 59.736 61.111 0.00 0.00 35.61 4.35
1511 1937 0.982673 CGTCTCCGAACACGAACATC 59.017 55.000 0.00 0.00 38.32 3.06
1535 1961 1.722677 GTTGTTGCCGACGTCCAAA 59.277 52.632 10.58 0.00 0.00 3.28
1570 1996 0.535797 GTACCCCTCCTCCGTTTCAG 59.464 60.000 0.00 0.00 0.00 3.02
1571 1997 0.906282 GGTACCCCTCCTCCGTTTCA 60.906 60.000 0.00 0.00 0.00 2.69
1595 2021 0.391661 TGCTCGATTTGGAGACCTGC 60.392 55.000 0.00 0.00 36.08 4.85
1598 2024 1.363744 CACTGCTCGATTTGGAGACC 58.636 55.000 0.00 0.00 36.08 3.85
1605 2031 0.250901 AACCTGCCACTGCTCGATTT 60.251 50.000 0.00 0.00 38.71 2.17
1610 2036 2.331132 GCTGAACCTGCCACTGCTC 61.331 63.158 0.00 0.00 38.71 4.26
1616 2042 2.594303 CCGTTGCTGAACCTGCCA 60.594 61.111 0.00 0.00 0.00 4.92
1684 2110 6.056236 ACGATTAGTGAGTAGAGAGTATGCA 58.944 40.000 0.00 0.00 0.00 3.96
1703 2129 7.928706 TCAACCAAAAATTAAACATGGACGATT 59.071 29.630 0.00 0.00 35.16 3.34
1704 2130 7.437748 TCAACCAAAAATTAAACATGGACGAT 58.562 30.769 0.00 0.00 35.16 3.73
1706 2132 7.650834 ATCAACCAAAAATTAAACATGGACG 57.349 32.000 0.00 0.00 35.16 4.79
1721 2282 3.963374 TGGACACCATGAAATCAACCAAA 59.037 39.130 0.00 0.00 0.00 3.28
1809 2370 1.538666 GGCATAGTTGGCTCCCCAT 59.461 57.895 0.00 0.00 44.68 4.00
1845 2406 5.567423 GCAATGCCTTACAGTGGAGATTTTT 60.567 40.000 0.00 0.00 44.51 1.94
1875 2441 4.677584 AGTTATTTCGCACAACTGCAAAA 58.322 34.783 0.00 0.00 44.50 2.44
1882 2448 7.901874 TCAAAACTTAGTTATTTCGCACAAC 57.098 32.000 0.00 0.00 0.00 3.32
1897 2483 9.162764 GATCTAGCCACACTATTTCAAAACTTA 57.837 33.333 0.00 0.00 0.00 2.24
1900 2486 7.334421 TGAGATCTAGCCACACTATTTCAAAAC 59.666 37.037 0.00 0.00 0.00 2.43
1901 2487 7.394016 TGAGATCTAGCCACACTATTTCAAAA 58.606 34.615 0.00 0.00 0.00 2.44
1912 2513 7.888250 ATATATCGATTGAGATCTAGCCACA 57.112 36.000 1.71 0.00 32.39 4.17
1974 2575 9.705290 GTGTGGGTTCTTGTCATTTTAAATATT 57.295 29.630 0.00 0.00 0.00 1.28
1975 2576 8.026607 CGTGTGGGTTCTTGTCATTTTAAATAT 58.973 33.333 0.00 0.00 0.00 1.28
1976 2577 7.228906 TCGTGTGGGTTCTTGTCATTTTAAATA 59.771 33.333 0.00 0.00 0.00 1.40
1977 2578 6.039941 TCGTGTGGGTTCTTGTCATTTTAAAT 59.960 34.615 0.00 0.00 0.00 1.40
1978 2579 5.357314 TCGTGTGGGTTCTTGTCATTTTAAA 59.643 36.000 0.00 0.00 0.00 1.52
1979 2580 4.882427 TCGTGTGGGTTCTTGTCATTTTAA 59.118 37.500 0.00 0.00 0.00 1.52
1980 2581 4.452825 TCGTGTGGGTTCTTGTCATTTTA 58.547 39.130 0.00 0.00 0.00 1.52
1981 2582 3.283751 TCGTGTGGGTTCTTGTCATTTT 58.716 40.909 0.00 0.00 0.00 1.82
1982 2583 2.925724 TCGTGTGGGTTCTTGTCATTT 58.074 42.857 0.00 0.00 0.00 2.32
1983 2584 2.631160 TCGTGTGGGTTCTTGTCATT 57.369 45.000 0.00 0.00 0.00 2.57
1984 2585 2.631160 TTCGTGTGGGTTCTTGTCAT 57.369 45.000 0.00 0.00 0.00 3.06
1985 2586 2.631160 ATTCGTGTGGGTTCTTGTCA 57.369 45.000 0.00 0.00 0.00 3.58
1986 2587 3.810941 TGTAATTCGTGTGGGTTCTTGTC 59.189 43.478 0.00 0.00 0.00 3.18
1987 2588 3.811083 TGTAATTCGTGTGGGTTCTTGT 58.189 40.909 0.00 0.00 0.00 3.16
1988 2589 4.035792 TGTTGTAATTCGTGTGGGTTCTTG 59.964 41.667 0.00 0.00 0.00 3.02
1989 2590 4.200874 TGTTGTAATTCGTGTGGGTTCTT 58.799 39.130 0.00 0.00 0.00 2.52
1990 2591 3.811083 TGTTGTAATTCGTGTGGGTTCT 58.189 40.909 0.00 0.00 0.00 3.01
1991 2592 4.759516 ATGTTGTAATTCGTGTGGGTTC 57.240 40.909 0.00 0.00 0.00 3.62
1992 2593 5.553123 TCTATGTTGTAATTCGTGTGGGTT 58.447 37.500 0.00 0.00 0.00 4.11
1993 2594 5.155278 TCTATGTTGTAATTCGTGTGGGT 57.845 39.130 0.00 0.00 0.00 4.51
1994 2595 6.677781 AATCTATGTTGTAATTCGTGTGGG 57.322 37.500 0.00 0.00 0.00 4.61
1995 2596 8.642908 TCTAATCTATGTTGTAATTCGTGTGG 57.357 34.615 0.00 0.00 0.00 4.17
1997 2598 9.261180 CCATCTAATCTATGTTGTAATTCGTGT 57.739 33.333 0.00 0.00 0.00 4.49
1998 2599 9.261180 ACCATCTAATCTATGTTGTAATTCGTG 57.739 33.333 0.00 0.00 0.00 4.35
1999 2600 9.832445 AACCATCTAATCTATGTTGTAATTCGT 57.168 29.630 0.00 0.00 0.00 3.85
2018 2619 9.442047 CTTCAGTCAACTCTTAATAAACCATCT 57.558 33.333 0.00 0.00 0.00 2.90
2019 2620 9.436957 TCTTCAGTCAACTCTTAATAAACCATC 57.563 33.333 0.00 0.00 0.00 3.51
2020 2621 9.793259 TTCTTCAGTCAACTCTTAATAAACCAT 57.207 29.630 0.00 0.00 0.00 3.55
2021 2622 9.621629 TTTCTTCAGTCAACTCTTAATAAACCA 57.378 29.630 0.00 0.00 0.00 3.67
2025 2626 8.730680 GCCATTTCTTCAGTCAACTCTTAATAA 58.269 33.333 0.00 0.00 0.00 1.40
2026 2627 7.882791 TGCCATTTCTTCAGTCAACTCTTAATA 59.117 33.333 0.00 0.00 0.00 0.98
2027 2628 6.716628 TGCCATTTCTTCAGTCAACTCTTAAT 59.283 34.615 0.00 0.00 0.00 1.40
2028 2629 6.061441 TGCCATTTCTTCAGTCAACTCTTAA 58.939 36.000 0.00 0.00 0.00 1.85
2029 2630 5.620206 TGCCATTTCTTCAGTCAACTCTTA 58.380 37.500 0.00 0.00 0.00 2.10
2030 2631 4.464008 TGCCATTTCTTCAGTCAACTCTT 58.536 39.130 0.00 0.00 0.00 2.85
2031 2632 4.090761 TGCCATTTCTTCAGTCAACTCT 57.909 40.909 0.00 0.00 0.00 3.24
2032 2633 4.540824 GTTGCCATTTCTTCAGTCAACTC 58.459 43.478 0.00 0.00 32.19 3.01
2033 2634 3.319122 GGTTGCCATTTCTTCAGTCAACT 59.681 43.478 0.00 0.00 34.49 3.16
2034 2635 3.552890 GGGTTGCCATTTCTTCAGTCAAC 60.553 47.826 0.00 0.00 33.61 3.18
2035 2636 2.627699 GGGTTGCCATTTCTTCAGTCAA 59.372 45.455 0.00 0.00 0.00 3.18
2036 2637 2.158475 AGGGTTGCCATTTCTTCAGTCA 60.158 45.455 0.00 0.00 0.00 3.41
2037 2638 2.229784 CAGGGTTGCCATTTCTTCAGTC 59.770 50.000 0.00 0.00 0.00 3.51
2038 2639 2.242043 CAGGGTTGCCATTTCTTCAGT 58.758 47.619 0.00 0.00 0.00 3.41
2039 2640 2.242043 ACAGGGTTGCCATTTCTTCAG 58.758 47.619 0.00 0.00 0.00 3.02
2040 2641 2.380064 ACAGGGTTGCCATTTCTTCA 57.620 45.000 0.00 0.00 0.00 3.02
2050 2651 6.318648 TCATGTCTTATATCAAACAGGGTTGC 59.681 38.462 0.00 0.00 0.00 4.17
2051 2652 7.864108 TCATGTCTTATATCAAACAGGGTTG 57.136 36.000 0.00 0.00 0.00 3.77
2053 2654 7.065803 CGTTTCATGTCTTATATCAAACAGGGT 59.934 37.037 0.00 0.00 0.00 4.34
2054 2655 7.409697 CGTTTCATGTCTTATATCAAACAGGG 58.590 38.462 0.00 0.00 0.00 4.45
2055 2656 7.409697 CCGTTTCATGTCTTATATCAAACAGG 58.590 38.462 0.00 0.00 0.00 4.00
2056 2657 7.409697 CCCGTTTCATGTCTTATATCAAACAG 58.590 38.462 0.00 0.00 0.00 3.16
2057 2658 6.317642 CCCCGTTTCATGTCTTATATCAAACA 59.682 38.462 0.00 0.00 0.00 2.83
2058 2659 6.238648 CCCCCGTTTCATGTCTTATATCAAAC 60.239 42.308 0.00 0.00 0.00 2.93
2059 2660 5.825679 CCCCCGTTTCATGTCTTATATCAAA 59.174 40.000 0.00 0.00 0.00 2.69
2060 2661 5.131308 TCCCCCGTTTCATGTCTTATATCAA 59.869 40.000 0.00 0.00 0.00 2.57
2061 2662 4.656575 TCCCCCGTTTCATGTCTTATATCA 59.343 41.667 0.00 0.00 0.00 2.15
2062 2663 5.223449 TCCCCCGTTTCATGTCTTATATC 57.777 43.478 0.00 0.00 0.00 1.63
2063 2664 5.843019 ATCCCCCGTTTCATGTCTTATAT 57.157 39.130 0.00 0.00 0.00 0.86
2064 2665 5.640158 AATCCCCCGTTTCATGTCTTATA 57.360 39.130 0.00 0.00 0.00 0.98
2065 2666 4.519906 AATCCCCCGTTTCATGTCTTAT 57.480 40.909 0.00 0.00 0.00 1.73
2066 2667 4.018779 AGAAATCCCCCGTTTCATGTCTTA 60.019 41.667 0.00 0.00 37.89 2.10
2067 2668 2.899303 AATCCCCCGTTTCATGTCTT 57.101 45.000 0.00 0.00 0.00 3.01
2068 2669 2.308866 AGAAATCCCCCGTTTCATGTCT 59.691 45.455 0.00 0.00 37.89 3.41
2069 2670 2.423538 CAGAAATCCCCCGTTTCATGTC 59.576 50.000 0.00 0.00 37.89 3.06
2070 2671 2.446435 CAGAAATCCCCCGTTTCATGT 58.554 47.619 0.00 0.00 37.89 3.21
2071 2672 1.134946 GCAGAAATCCCCCGTTTCATG 59.865 52.381 0.00 0.00 37.89 3.07
2072 2673 1.272425 TGCAGAAATCCCCCGTTTCAT 60.272 47.619 0.00 0.00 37.89 2.57
2073 2674 0.111446 TGCAGAAATCCCCCGTTTCA 59.889 50.000 0.00 0.00 37.89 2.69
2074 2675 1.134946 CATGCAGAAATCCCCCGTTTC 59.865 52.381 0.00 0.00 36.15 2.78
2075 2676 1.185315 CATGCAGAAATCCCCCGTTT 58.815 50.000 0.00 0.00 0.00 3.60
2076 2677 1.322538 GCATGCAGAAATCCCCCGTT 61.323 55.000 14.21 0.00 0.00 4.44
2077 2678 1.754234 GCATGCAGAAATCCCCCGT 60.754 57.895 14.21 0.00 0.00 5.28
2078 2679 1.731433 CTGCATGCAGAAATCCCCCG 61.731 60.000 38.90 11.77 46.30 5.73
2079 2680 2.121645 CTGCATGCAGAAATCCCCC 58.878 57.895 38.90 0.00 46.30 5.40
2088 2689 0.663688 GCTCTCCATTCTGCATGCAG 59.336 55.000 36.80 36.80 44.86 4.41
2137 2738 2.289506 GGCCTCTCGTCACCTTAAAGTT 60.290 50.000 0.00 0.00 0.00 2.66
2142 2743 0.039180 TCTGGCCTCTCGTCACCTTA 59.961 55.000 3.32 0.00 0.00 2.69
2154 2755 0.034670 GCTTGTTCTCCATCTGGCCT 60.035 55.000 3.32 0.00 34.44 5.19
2156 2757 1.093159 CAGCTTGTTCTCCATCTGGC 58.907 55.000 0.00 0.00 34.44 4.85
2191 2792 0.037326 TTCGAAAGGAGCTCACGCAT 60.037 50.000 17.19 0.00 39.10 4.73
2215 2816 3.244353 CCACCGATGCTAATGAGGAAGAT 60.244 47.826 0.00 0.00 0.00 2.40
2325 2926 3.767131 TGTCATAGAGGGACGTGATGAAA 59.233 43.478 0.00 0.00 38.10 2.69
2326 2927 3.361786 TGTCATAGAGGGACGTGATGAA 58.638 45.455 0.00 0.00 38.10 2.57
2327 2928 3.012934 TGTCATAGAGGGACGTGATGA 57.987 47.619 0.00 0.00 38.10 2.92
2367 2968 1.445582 GAGGCCGACGTTGACGATT 60.446 57.895 10.87 0.00 43.02 3.34
2439 3046 2.677003 ATCGAACGCGGTGGCTTTG 61.677 57.895 12.47 0.00 38.28 2.77
2483 3090 1.289380 GACTTCTTGGACGCGAGGT 59.711 57.895 15.93 0.00 0.00 3.85
2511 3118 5.906113 CATAGAAGTCGCCTATGGAGTAT 57.094 43.478 0.00 0.00 39.64 2.12
2520 3127 1.134670 GTGAAGCCATAGAAGTCGCCT 60.135 52.381 0.00 0.00 0.00 5.52
2630 3237 3.636300 GCTGGTAAATATGGCAATGGTGA 59.364 43.478 0.00 0.00 0.00 4.02
2636 3243 2.383855 GGGTGCTGGTAAATATGGCAA 58.616 47.619 0.00 0.00 34.65 4.52
2669 3280 6.315144 TGTGTGTTGGTAGATAATGGAATTCG 59.685 38.462 0.00 0.00 37.87 3.34
2701 3312 5.354513 TGTGTGTTGGTACATTCTCGAAAAA 59.645 36.000 0.00 0.00 39.30 1.94
2702 3313 4.876679 TGTGTGTTGGTACATTCTCGAAAA 59.123 37.500 0.00 0.00 39.30 2.29
2703 3314 4.443621 TGTGTGTTGGTACATTCTCGAAA 58.556 39.130 0.00 0.00 39.30 3.46
2704 3315 4.061357 TGTGTGTTGGTACATTCTCGAA 57.939 40.909 0.00 0.00 39.30 3.71
2705 3316 3.737032 TGTGTGTTGGTACATTCTCGA 57.263 42.857 0.00 0.00 39.30 4.04
2706 3317 3.745975 ACATGTGTGTTGGTACATTCTCG 59.254 43.478 0.00 0.00 39.30 4.04
2707 3318 5.034554 CACATGTGTGTTGGTACATTCTC 57.965 43.478 18.03 0.00 40.96 2.87
2746 3357 8.643752 ACAAGTAAACAATGAAACAAACGAAAG 58.356 29.630 0.00 0.00 0.00 2.62
2748 3359 8.522178 AACAAGTAAACAATGAAACAAACGAA 57.478 26.923 0.00 0.00 0.00 3.85
2750 3361 9.828220 CATAACAAGTAAACAATGAAACAAACG 57.172 29.630 0.00 0.00 0.00 3.60
2768 3379 4.857799 TGCACATCACACAACATAACAAG 58.142 39.130 0.00 0.00 0.00 3.16
2883 3494 3.387374 CAGCCCTATCTGTCATGAACTCT 59.613 47.826 0.00 0.00 0.00 3.24
3164 3780 2.250188 CCAATTTTGGCTTTAGACGCG 58.750 47.619 3.53 3.53 42.21 6.01
3214 3831 5.705441 TGCAGTCGTCAAGATAATTTCCTTT 59.295 36.000 0.00 0.00 0.00 3.11
3218 3835 6.303259 GTGTTTGCAGTCGTCAAGATAATTTC 59.697 38.462 0.00 0.00 0.00 2.17
3231 3848 1.396648 TGAACAGTGTGTTTGCAGTCG 59.603 47.619 0.00 0.00 41.28 4.18
3235 3852 0.449786 CGGTGAACAGTGTGTTTGCA 59.550 50.000 0.00 0.00 41.28 4.08
3246 3863 5.391523 GCAAAAATCTATACTGCGGTGAACA 60.392 40.000 8.92 0.00 0.00 3.18
3269 3886 1.916697 GCTCAACCTTTGCTCCTCGC 61.917 60.000 0.00 0.00 39.77 5.03
3324 3948 6.667558 AGGGCGATAGTAGTAAGCTATTTT 57.332 37.500 0.00 0.00 39.35 1.82
3360 3984 5.733620 AGTTTACCTCACCGTTATTCTCA 57.266 39.130 0.00 0.00 0.00 3.27
3424 4048 4.177165 TGCGTCGTGTCTTTATTTCCTA 57.823 40.909 0.00 0.00 0.00 2.94
3443 4069 5.718649 TCATTGTCTCGCTTAGTATTTGC 57.281 39.130 0.00 0.00 0.00 3.68
3480 4106 9.294030 GATCATGTTCAAATAGTTTTTAGCCTG 57.706 33.333 0.00 0.00 0.00 4.85
3497 4123 8.686397 CATGCTCTACATAGTAGATCATGTTC 57.314 38.462 26.88 0.00 40.49 3.18
3519 4145 7.361286 GGTCTTTTAGCTTTGTCCTCTAACATG 60.361 40.741 0.00 0.00 0.00 3.21
3528 4154 3.562557 TGTTCGGTCTTTTAGCTTTGTCC 59.437 43.478 0.00 0.00 0.00 4.02
3530 4156 4.448210 TCTGTTCGGTCTTTTAGCTTTGT 58.552 39.130 0.00 0.00 0.00 2.83
3533 4159 4.455877 CCAATCTGTTCGGTCTTTTAGCTT 59.544 41.667 0.00 0.00 0.00 3.74
3556 4185 7.543172 AGTTTCTTTAAAACCGAAGAACCAAAC 59.457 33.333 0.00 0.00 40.49 2.93
3559 4188 6.762702 AGTTTCTTTAAAACCGAAGAACCA 57.237 33.333 0.00 0.00 40.49 3.67
3608 4237 7.630242 ATGGTCCTTGATGTGTTATAAACTG 57.370 36.000 0.00 0.00 0.00 3.16
3677 4306 8.033626 TGTGATCTGAATCTATGTGAGATATGC 58.966 37.037 0.00 0.00 44.68 3.14
3685 4314 6.922407 AGACGATTGTGATCTGAATCTATGTG 59.078 38.462 12.58 3.36 32.75 3.21
3727 4356 6.371548 GGAAAATAAGGAATTCTTGGCAAACC 59.628 38.462 5.23 0.52 36.93 3.27
3755 4384 6.336566 TGCTTCTATTGCTTGTCAAAAACAA 58.663 32.000 0.00 0.00 45.60 2.83
3772 4401 7.011499 TGGTACTACCATTCTTTTGCTTCTA 57.989 36.000 3.57 0.00 44.79 2.10
3787 4416 8.129211 GCAAAAAGTTCATATGATGGTACTACC 58.871 37.037 6.17 0.00 39.22 3.18
3878 4507 8.306761 CAATGCAAAGAAGTACCTTAAAGGATT 58.693 33.333 0.00 0.00 37.67 3.01
3879 4508 7.577616 GCAATGCAAAGAAGTACCTTAAAGGAT 60.578 37.037 0.00 0.00 37.67 3.24
3880 4509 6.294508 GCAATGCAAAGAAGTACCTTAAAGGA 60.295 38.462 0.00 0.00 37.67 3.36
3881 4510 5.863935 GCAATGCAAAGAAGTACCTTAAAGG 59.136 40.000 0.00 0.00 42.49 3.11
3882 4511 6.446318 TGCAATGCAAAGAAGTACCTTAAAG 58.554 36.000 5.01 0.00 34.76 1.85
3883 4512 6.398234 TGCAATGCAAAGAAGTACCTTAAA 57.602 33.333 5.01 0.00 34.76 1.52
3884 4513 5.048083 CCTGCAATGCAAAGAAGTACCTTAA 60.048 40.000 9.92 0.00 38.41 1.85
3893 4522 4.958509 TCAAATTCCTGCAATGCAAAGAA 58.041 34.783 18.58 18.58 38.41 2.52
3900 4529 7.098477 TCCTATGTTTTCAAATTCCTGCAATG 58.902 34.615 0.00 0.00 0.00 2.82
3905 4534 9.754382 CCATATTCCTATGTTTTCAAATTCCTG 57.246 33.333 0.00 0.00 34.12 3.86
3998 4627 0.467290 ACCATCCAAACGCACCTGTT 60.467 50.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.