Multiple sequence alignment - TraesCS7D01G063300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G063300 chr7D 100.000 4456 0 0 1 4456 34443967 34448422 0.000000e+00 8229.0
1 TraesCS7D01G063300 chr7D 87.179 1287 82 43 629 1863 34077568 34076313 0.000000e+00 1386.0
2 TraesCS7D01G063300 chr7D 88.137 1020 63 39 573 1556 34152141 34151144 0.000000e+00 1160.0
3 TraesCS7D01G063300 chr7D 86.115 785 93 9 2702 3476 34074589 34073811 0.000000e+00 832.0
4 TraesCS7D01G063300 chr7D 89.058 658 43 20 3813 4446 38441010 38441662 0.000000e+00 789.0
5 TraesCS7D01G063300 chr7D 98.272 405 7 0 3813 4217 52803005 52803409 0.000000e+00 710.0
6 TraesCS7D01G063300 chr7D 97.330 412 11 0 3813 4224 49778822 49778411 0.000000e+00 701.0
7 TraesCS7D01G063300 chr7D 90.257 544 35 9 26 553 34078387 34077846 0.000000e+00 695.0
8 TraesCS7D01G063300 chr7D 86.050 681 54 12 2490 3160 34150165 34149516 0.000000e+00 693.0
9 TraesCS7D01G063300 chr7D 90.554 487 26 9 3178 3660 34149534 34149064 1.050000e-175 627.0
10 TraesCS7D01G063300 chr7D 89.173 508 42 12 3958 4456 108386159 108386662 4.900000e-174 621.0
11 TraesCS7D01G063300 chr7D 88.932 515 22 14 61 553 34168930 34168429 1.770000e-168 603.0
12 TraesCS7D01G063300 chr7D 83.453 556 38 25 28 553 34152796 34152265 6.750000e-128 468.0
13 TraesCS7D01G063300 chr7D 80.989 526 61 18 40 550 33753337 33753838 9.040000e-102 381.0
14 TraesCS7D01G063300 chr7D 86.957 276 14 3 1746 2004 34150974 34150704 1.570000e-74 291.0
15 TraesCS7D01G063300 chr7D 95.000 100 4 1 783 882 33754330 33754428 5.970000e-34 156.0
16 TraesCS7D01G063300 chr7D 90.566 106 4 3 572 672 34077693 34077589 7.770000e-28 135.0
17 TraesCS7D01G063300 chr7D 96.491 57 1 1 572 628 33753988 33754043 4.750000e-15 93.5
18 TraesCS7D01G063300 chr4A 86.559 1421 130 20 2381 3783 690937142 690935765 0.000000e+00 1509.0
19 TraesCS7D01G063300 chr4A 91.920 953 56 7 983 1929 690881576 690880639 0.000000e+00 1314.0
20 TraesCS7D01G063300 chr4A 86.215 1284 93 44 698 1925 690938566 690937311 0.000000e+00 1314.0
21 TraesCS7D01G063300 chr4A 87.795 975 52 23 708 1634 690689736 690688781 0.000000e+00 1079.0
22 TraesCS7D01G063300 chr4A 86.496 859 47 35 726 1556 691166216 691167033 0.000000e+00 880.0
23 TraesCS7D01G063300 chr4A 87.582 765 85 8 2722 3478 690885093 690884331 0.000000e+00 878.0
24 TraesCS7D01G063300 chr4A 85.181 884 63 27 988 1848 691150623 691151461 0.000000e+00 845.0
25 TraesCS7D01G063300 chr4A 85.556 810 108 5 2677 3477 691168531 691169340 0.000000e+00 839.0
26 TraesCS7D01G063300 chr4A 85.641 780 105 4 2702 3477 691152472 691153248 0.000000e+00 813.0
27 TraesCS7D01G063300 chr4A 82.986 911 92 35 991 1870 691246753 691247631 0.000000e+00 765.0
28 TraesCS7D01G063300 chr4A 81.954 1003 83 55 991 1950 691323846 691324793 0.000000e+00 760.0
29 TraesCS7D01G063300 chr4A 83.851 805 103 13 2683 3480 691325142 691325926 0.000000e+00 741.0
30 TraesCS7D01G063300 chr4A 87.954 606 42 20 976 1559 690886996 690886400 0.000000e+00 686.0
31 TraesCS7D01G063300 chr4A 83.880 732 91 14 2759 3480 691248490 691249204 0.000000e+00 673.0
32 TraesCS7D01G063300 chr4A 86.579 611 73 7 2877 3478 690879955 690879345 0.000000e+00 665.0
33 TraesCS7D01G063300 chr4A 80.059 1013 99 47 1000 1953 691470116 691469148 0.000000e+00 656.0
34 TraesCS7D01G063300 chr4A 89.744 507 29 11 2334 2831 690880457 690879965 1.050000e-175 627.0
35 TraesCS7D01G063300 chr4A 85.217 575 76 3 2714 3282 690687677 690687106 2.310000e-162 582.0
36 TraesCS7D01G063300 chr4A 86.717 527 36 15 28 552 690939205 690938711 5.040000e-154 555.0
37 TraesCS7D01G063300 chr4A 86.127 519 29 10 28 525 690690423 690689927 1.840000e-143 520.0
38 TraesCS7D01G063300 chr4A 85.448 536 37 17 25 547 691165398 691165905 1.840000e-143 520.0
39 TraesCS7D01G063300 chr4A 85.094 530 49 14 28 551 690732536 690732031 8.550000e-142 514.0
40 TraesCS7D01G063300 chr4A 84.369 531 52 14 26 553 690882585 690882083 4.000000e-135 492.0
41 TraesCS7D01G063300 chr4A 84.486 477 41 18 81 553 691149893 691150340 1.470000e-119 440.0
42 TraesCS7D01G063300 chr4A 85.526 380 33 6 1683 2060 691167330 691167689 1.170000e-100 377.0
43 TraesCS7D01G063300 chr4A 90.987 233 8 5 639 871 690881833 690881614 7.240000e-78 302.0
44 TraesCS7D01G063300 chr4A 93.252 163 11 0 28 190 690888615 690888453 1.600000e-59 241.0
45 TraesCS7D01G063300 chr4A 77.159 521 50 43 2730 3202 691468084 691467585 5.760000e-59 239.0
46 TraesCS7D01G063300 chr4A 87.895 190 8 4 696 883 691150426 691150602 4.520000e-50 209.0
47 TraesCS7D01G063300 chr4A 81.463 205 30 4 3331 3534 690674473 690674276 1.280000e-35 161.0
48 TraesCS7D01G063300 chr4A 93.458 107 2 2 2327 2433 690885880 690885779 2.150000e-33 154.0
49 TraesCS7D01G063300 chr4A 91.429 105 8 1 777 881 691323730 691323833 4.650000e-30 143.0
50 TraesCS7D01G063300 chr4A 77.352 287 30 15 40 319 691471420 691471162 2.160000e-28 137.0
51 TraesCS7D01G063300 chr4A 85.217 115 13 1 2345 2459 691152158 691152268 1.010000e-21 115.0
52 TraesCS7D01G063300 chr4A 93.750 64 3 1 572 635 690881938 690881876 1.320000e-15 95.3
53 TraesCS7D01G063300 chr4A 96.491 57 1 1 572 628 691470756 691470701 4.750000e-15 93.5
54 TraesCS7D01G063300 chr4A 92.188 64 5 0 26 89 691149563 691149626 1.710000e-14 91.6
55 TraesCS7D01G063300 chr4A 93.220 59 3 1 674 732 691470600 691470543 7.940000e-13 86.1
56 TraesCS7D01G063300 chr4A 92.453 53 3 1 578 630 690887604 690887553 1.720000e-09 75.0
57 TraesCS7D01G063300 chr4A 85.507 69 10 0 3359 3427 691467428 691467360 6.180000e-09 73.1
58 TraesCS7D01G063300 chr7A 87.435 772 89 6 2702 3468 34518220 34517452 0.000000e+00 881.0
59 TraesCS7D01G063300 chr7A 90.308 650 38 8 1229 1863 34519385 34518746 0.000000e+00 828.0
60 TraesCS7D01G063300 chr7A 82.671 906 74 44 1000 1859 34106557 34105689 0.000000e+00 726.0
61 TraesCS7D01G063300 chr7A 89.912 565 47 4 995 1550 34452509 34451946 0.000000e+00 719.0
62 TraesCS7D01G063300 chr7A 86.186 666 61 16 571 1214 34520086 34519430 0.000000e+00 691.0
63 TraesCS7D01G063300 chr7A 79.455 550 62 28 28 549 34119505 34118979 4.270000e-90 342.0
64 TraesCS7D01G063300 chr7A 91.250 240 15 1 84 323 34520621 34520388 5.560000e-84 322.0
65 TraesCS7D01G063300 chr7A 77.930 512 53 32 2730 3202 34104458 34103968 9.500000e-67 265.0
66 TraesCS7D01G063300 chr7A 92.021 188 9 5 372 553 34520398 34520211 4.420000e-65 259.0
67 TraesCS7D01G063300 chr7A 79.205 327 48 17 572 882 34452835 34452513 4.520000e-50 209.0
68 TraesCS7D01G063300 chr7A 95.000 100 4 1 783 882 34106856 34106758 5.970000e-34 156.0
69 TraesCS7D01G063300 chr7A 88.393 112 9 2 2348 2459 34518485 34518378 1.010000e-26 132.0
70 TraesCS7D01G063300 chr7A 96.491 57 1 1 572 628 34107203 34107148 4.750000e-15 93.5
71 TraesCS7D01G063300 chr7A 80.833 120 18 5 34 151 34458982 34458866 6.140000e-14 89.8
72 TraesCS7D01G063300 chr1D 88.855 655 47 13 3813 4446 478107560 478108209 0.000000e+00 782.0
73 TraesCS7D01G063300 chr1D 89.697 495 31 18 3958 4446 30405313 30404833 8.190000e-172 614.0
74 TraesCS7D01G063300 chr1D 94.714 227 8 4 4221 4446 28044506 28044283 2.550000e-92 350.0
75 TraesCS7D01G063300 chr1D 94.714 227 8 4 4221 4446 41166402 41166179 2.550000e-92 350.0
76 TraesCS7D01G063300 chr1D 92.593 243 13 5 4217 4456 454611731 454611971 1.190000e-90 344.0
77 TraesCS7D01G063300 chr1D 76.515 132 29 2 1032 1162 359666062 359665932 2.220000e-08 71.3
78 TraesCS7D01G063300 chr1D 93.023 43 3 0 1029 1071 355698802 355698760 3.720000e-06 63.9
79 TraesCS7D01G063300 chr1D 100.000 28 0 0 3782 3809 201343185 201343158 8.000000e-03 52.8
80 TraesCS7D01G063300 chrUn 98.025 405 8 0 3813 4217 175517877 175518281 0.000000e+00 704.0
81 TraesCS7D01G063300 chrUn 98.025 405 8 0 3813 4217 181398053 181397649 0.000000e+00 704.0
82 TraesCS7D01G063300 chrUn 98.025 405 8 0 3813 4217 194288022 194288426 0.000000e+00 704.0
83 TraesCS7D01G063300 chrUn 98.025 405 8 0 3813 4217 211498395 211498799 0.000000e+00 704.0
84 TraesCS7D01G063300 chrUn 93.642 173 10 1 2160 2331 82595921 82595749 1.590000e-64 257.0
85 TraesCS7D01G063300 chr6D 97.330 412 11 0 3813 4224 13394299 13393888 0.000000e+00 701.0
86 TraesCS7D01G063300 chr6D 97.330 412 11 0 3813 4224 436400099 436399688 0.000000e+00 701.0
87 TraesCS7D01G063300 chr6D 93.004 243 12 5 4217 4456 66123706 66123466 2.550000e-92 350.0
88 TraesCS7D01G063300 chr6D 82.833 233 33 5 1316 1548 310888064 310887839 7.560000e-48 202.0
89 TraesCS7D01G063300 chr6D 81.609 87 12 3 1467 1551 27819969 27819885 8.000000e-08 69.4
90 TraesCS7D01G063300 chr6D 97.500 40 1 0 1032 1071 27820271 27820232 8.000000e-08 69.4
91 TraesCS7D01G063300 chr3D 97.101 414 11 1 3813 4226 554375624 554375212 0.000000e+00 697.0
92 TraesCS7D01G063300 chr2D 92.213 244 14 5 4216 4456 7690848 7691089 1.540000e-89 340.0
93 TraesCS7D01G063300 chr5D 95.152 165 7 1 2162 2325 390357073 390357237 4.420000e-65 259.0
94 TraesCS7D01G063300 chr5D 94.444 36 2 0 3774 3809 379421614 379421579 6.230000e-04 56.5
95 TraesCS7D01G063300 chr3A 93.678 174 10 1 2160 2332 19891944 19891771 4.420000e-65 259.0
96 TraesCS7D01G063300 chr3A 95.152 165 7 1 2162 2325 617617639 617617803 4.420000e-65 259.0
97 TraesCS7D01G063300 chr4B 90.769 195 12 6 2160 2351 626087579 626087770 5.720000e-64 255.0
98 TraesCS7D01G063300 chr4B 76.724 232 47 6 1316 1547 611553240 611553016 6.050000e-24 122.0
99 TraesCS7D01G063300 chr4B 97.297 37 0 1 3774 3809 602459553 602459517 1.340000e-05 62.1
100 TraesCS7D01G063300 chr4B 100.000 28 0 0 3782 3809 655170765 655170792 8.000000e-03 52.8
101 TraesCS7D01G063300 chr5B 93.567 171 9 2 2160 2329 522874677 522874846 2.060000e-63 254.0
102 TraesCS7D01G063300 chr5B 93.605 172 8 3 2162 2331 592354654 592354484 2.060000e-63 254.0
103 TraesCS7D01G063300 chr5B 92.135 178 12 2 2161 2336 695969203 695969380 2.660000e-62 250.0
104 TraesCS7D01G063300 chr5B 74.009 227 53 6 1318 1541 267779029 267778806 2.210000e-13 87.9
105 TraesCS7D01G063300 chr5B 94.286 35 2 0 3775 3809 19957451 19957417 2.000000e-03 54.7
106 TraesCS7D01G063300 chr1B 89.109 202 14 7 2160 2354 106527082 106526882 1.240000e-60 244.0
107 TraesCS7D01G063300 chr1B 95.349 43 2 0 1029 1071 478583728 478583686 8.000000e-08 69.4
108 TraesCS7D01G063300 chr1B 96.875 32 1 0 3778 3809 215597758 215597789 2.000000e-03 54.7
109 TraesCS7D01G063300 chr1B 100.000 29 0 0 3781 3809 561188609 561188581 2.000000e-03 54.7
110 TraesCS7D01G063300 chr6A 81.545 233 36 5 1316 1548 447178891 447178666 7.610000e-43 185.0
111 TraesCS7D01G063300 chr6A 81.609 87 12 3 1467 1551 30190898 30190814 8.000000e-08 69.4
112 TraesCS7D01G063300 chr6A 97.500 40 1 0 1032 1071 30191200 30191161 8.000000e-08 69.4
113 TraesCS7D01G063300 chr6A 100.000 31 0 0 3779 3809 508283270 508283240 1.730000e-04 58.4
114 TraesCS7D01G063300 chr6A 94.286 35 2 0 3775 3809 17915724 17915690 2.000000e-03 54.7
115 TraesCS7D01G063300 chr4D 76.724 232 47 7 1316 1547 481912288 481912064 6.050000e-24 122.0
116 TraesCS7D01G063300 chr4D 92.500 40 2 1 3770 3809 98660518 98660556 6.230000e-04 56.5
117 TraesCS7D01G063300 chr4D 96.875 32 1 0 3778 3809 211295072 211295103 2.000000e-03 54.7
118 TraesCS7D01G063300 chr5A 75.862 232 49 7 1316 1547 660799530 660799754 1.310000e-20 111.0
119 TraesCS7D01G063300 chr5A 74.684 237 54 6 1318 1551 317247912 317247679 2.840000e-17 100.0
120 TraesCS7D01G063300 chr5A 100.000 29 0 0 3781 3809 262917498 262917470 2.000000e-03 54.7
121 TraesCS7D01G063300 chr1A 95.349 43 2 0 1029 1071 456323558 456323516 8.000000e-08 69.4
122 TraesCS7D01G063300 chr1A 97.500 40 1 0 1032 1071 459188394 459188355 8.000000e-08 69.4
123 TraesCS7D01G063300 chr3B 96.970 33 0 1 3777 3809 327813453 327813484 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G063300 chr7D 34443967 34448422 4455 False 8229.000000 8229 100.000000 1 4456 1 chr7D.!!$F1 4455
1 TraesCS7D01G063300 chr7D 38441010 38441662 652 False 789.000000 789 89.058000 3813 4446 1 chr7D.!!$F2 633
2 TraesCS7D01G063300 chr7D 34073811 34078387 4576 True 762.000000 1386 88.529250 26 3476 4 chr7D.!!$R3 3450
3 TraesCS7D01G063300 chr7D 34149064 34152796 3732 True 647.800000 1160 87.030200 28 3660 5 chr7D.!!$R4 3632
4 TraesCS7D01G063300 chr7D 108386159 108386662 503 False 621.000000 621 89.173000 3958 4456 1 chr7D.!!$F4 498
5 TraesCS7D01G063300 chr7D 34168429 34168930 501 True 603.000000 603 88.932000 61 553 1 chr7D.!!$R1 492
6 TraesCS7D01G063300 chr7D 33753337 33754428 1091 False 210.166667 381 90.826667 40 882 3 chr7D.!!$F5 842
7 TraesCS7D01G063300 chr4A 690935765 690939205 3440 True 1126.000000 1509 86.497000 28 3783 3 chr4A.!!$R5 3755
8 TraesCS7D01G063300 chr4A 690687106 690690423 3317 True 727.000000 1079 86.379667 28 3282 3 chr4A.!!$R3 3254
9 TraesCS7D01G063300 chr4A 691246753 691249204 2451 False 719.000000 765 83.433000 991 3480 2 chr4A.!!$F3 2489
10 TraesCS7D01G063300 chr4A 691165398 691169340 3942 False 654.000000 880 85.756500 25 3477 4 chr4A.!!$F2 3452
11 TraesCS7D01G063300 chr4A 691323730 691325926 2196 False 548.000000 760 85.744667 777 3480 3 chr4A.!!$F4 2703
12 TraesCS7D01G063300 chr4A 690732031 690732536 505 True 514.000000 514 85.094000 28 551 1 chr4A.!!$R2 523
13 TraesCS7D01G063300 chr4A 690879345 690888615 9270 True 502.663636 1314 90.186182 26 3478 11 chr4A.!!$R4 3452
14 TraesCS7D01G063300 chr4A 691149563 691153248 3685 False 418.933333 845 86.768000 26 3477 6 chr4A.!!$F1 3451
15 TraesCS7D01G063300 chr4A 691467360 691471420 4060 True 214.116667 656 84.964667 40 3427 6 chr4A.!!$R6 3387
16 TraesCS7D01G063300 chr7A 34517452 34520621 3169 True 518.833333 881 89.265500 84 3468 6 chr7A.!!$R5 3384
17 TraesCS7D01G063300 chr7A 34451946 34452835 889 True 464.000000 719 84.558500 572 1550 2 chr7A.!!$R4 978
18 TraesCS7D01G063300 chr7A 34118979 34119505 526 True 342.000000 342 79.455000 28 549 1 chr7A.!!$R1 521
19 TraesCS7D01G063300 chr7A 34103968 34107203 3235 True 310.125000 726 88.023000 572 3202 4 chr7A.!!$R3 2630
20 TraesCS7D01G063300 chr1D 478107560 478108209 649 False 782.000000 782 88.855000 3813 4446 1 chr1D.!!$F2 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 7134 0.037590 TGGGGATCAGTTCGGTTTGG 59.962 55.0 0.0 0.0 0.00 3.28 F
635 7198 0.402504 AGGTCACGTGTCCTCTCTCT 59.597 55.0 25.9 5.9 0.00 3.10 F
1971 9892 0.459899 TGGCGAGCAGACATAATCGT 59.540 50.0 0.0 0.0 37.49 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 10291 0.031994 GCGGTTGACTTTGCATGGTT 59.968 50.0 0.00 0.0 0.0 3.67 R
2359 11087 0.793861 GTGTCTCCGCGTGCAAATTA 59.206 50.0 4.92 0.0 0.0 1.40 R
3522 13625 0.038618 TGTAGTGCGTGCGATTGACT 60.039 50.0 0.00 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.932261 AGGGGATCGTTTAGATTTGCC 58.068 47.619 0.00 0.00 40.26 4.52
23 24 1.954382 GGGGATCGTTTAGATTTGCCC 59.046 52.381 0.00 0.00 40.26 5.36
24 25 1.954382 GGGATCGTTTAGATTTGCCCC 59.046 52.381 0.00 0.00 40.26 5.80
44 45 6.100569 TGCCCCTGTAGTATAGCTTGAAATAA 59.899 38.462 0.00 0.00 0.00 1.40
284 949 4.054671 AGAGAAGTCAAGAAAGCTGTTCG 58.945 43.478 0.00 0.00 0.00 3.95
390 1105 4.083537 TGAGCAATGCAACTTTTACTACCG 60.084 41.667 8.35 0.00 0.00 4.02
408 1123 1.539827 CCGTGTGGAACTTGATTTCCC 59.460 52.381 0.00 0.00 44.11 3.97
452 1178 6.033831 GTCACGCATGAACATGAAATAAAAGG 59.966 38.462 17.40 0.00 41.20 3.11
468 1194 2.282180 GGGAGAAACGGCTGGCAA 60.282 61.111 1.08 0.00 0.00 4.52
527 1290 4.413495 AATTTATGACAACGTCAACCGG 57.587 40.909 0.00 0.00 45.96 5.28
553 1316 3.854286 TGAACGAAAAGAGAGAAACGC 57.146 42.857 0.00 0.00 0.00 4.84
555 1318 3.619483 TGAACGAAAAGAGAGAAACGCAA 59.381 39.130 0.00 0.00 0.00 4.85
558 1321 3.372822 ACGAAAAGAGAGAAACGCAAACA 59.627 39.130 0.00 0.00 0.00 2.83
559 1322 4.035208 ACGAAAAGAGAGAAACGCAAACAT 59.965 37.500 0.00 0.00 0.00 2.71
560 1323 4.376861 CGAAAAGAGAGAAACGCAAACATG 59.623 41.667 0.00 0.00 0.00 3.21
564 1327 3.496130 AGAGAGAAACGCAAACATGACAG 59.504 43.478 0.00 0.00 0.00 3.51
568 7113 2.502510 CGCAAACATGACAGCGCC 60.503 61.111 2.29 0.00 43.80 6.53
589 7134 0.037590 TGGGGATCAGTTCGGTTTGG 59.962 55.000 0.00 0.00 0.00 3.28
635 7198 0.402504 AGGTCACGTGTCCTCTCTCT 59.597 55.000 25.90 5.90 0.00 3.10
666 7372 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
667 7373 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
883 7710 1.080354 ACCATCGTCTTCCCTCCCA 59.920 57.895 0.00 0.00 0.00 4.37
898 7770 2.012673 CTCCCATCAGTTGTTGCTAGC 58.987 52.381 8.10 8.10 0.00 3.42
899 7771 1.630369 TCCCATCAGTTGTTGCTAGCT 59.370 47.619 17.23 0.00 0.00 3.32
909 7782 2.426522 TGTTGCTAGCTTTGTAGGCTG 58.573 47.619 17.23 0.00 40.52 4.85
941 7819 4.019411 TGGATCATTTCACTCCAGCTACAA 60.019 41.667 0.00 0.00 34.17 2.41
1071 7982 3.213402 CCGACGGAGGAGGAGCTC 61.213 72.222 8.64 4.71 0.00 4.09
1088 7999 1.408544 GCTCCTCACCTACTACCTCGT 60.409 57.143 0.00 0.00 0.00 4.18
1104 8015 1.118965 TCGTCAAGAAGGTGGCCTCA 61.119 55.000 3.32 0.00 30.89 3.86
1408 8392 4.035102 GCCGGGTTCTGGAAGGCT 62.035 66.667 2.18 0.00 44.06 4.58
1611 8652 1.548719 CAGTGACTCATTCCCGGTACA 59.451 52.381 0.00 0.00 0.00 2.90
1634 8681 5.026038 TGCTCTACTACTACAGTCTCTCC 57.974 47.826 0.00 0.00 38.80 3.71
1721 8967 1.153489 CTCGCTAGTGGTGCATGCT 60.153 57.895 20.33 0.00 0.00 3.79
1736 8993 2.032550 GCATGCTTGCGATCAATGTACT 59.967 45.455 11.37 0.00 39.49 2.73
1767 9026 9.114965 GTACGCATATACTTTCTGTGTATGTAG 57.885 37.037 11.93 9.66 46.11 2.74
1813 9088 4.810790 ACGACAAGGTCTAGTGAAGATTG 58.189 43.478 0.00 0.00 36.36 2.67
1898 9378 2.291217 GGGAGCTGTGATTTCCTTTCCT 60.291 50.000 0.00 0.00 0.00 3.36
1899 9379 3.425659 GGAGCTGTGATTTCCTTTCCTT 58.574 45.455 0.00 0.00 0.00 3.36
1953 9874 4.342359 ACTGGGTAGTAGGTTCAGTACTG 58.658 47.826 17.17 17.17 36.98 2.74
1971 9892 0.459899 TGGCGAGCAGACATAATCGT 59.540 50.000 0.00 0.00 37.49 3.73
2061 10229 8.660295 TGAGTTAACTCCCATTTAGTCTTCTA 57.340 34.615 28.43 5.28 42.20 2.10
2062 10230 8.529476 TGAGTTAACTCCCATTTAGTCTTCTAC 58.471 37.037 28.43 2.74 42.20 2.59
2063 10231 8.667592 AGTTAACTCCCATTTAGTCTTCTACT 57.332 34.615 1.12 0.00 42.62 2.57
2064 10232 8.751242 AGTTAACTCCCATTTAGTCTTCTACTC 58.249 37.037 1.12 0.00 39.80 2.59
2065 10233 6.547930 AACTCCCATTTAGTCTTCTACTCC 57.452 41.667 0.00 0.00 39.80 3.85
2066 10234 5.590818 ACTCCCATTTAGTCTTCTACTCCA 58.409 41.667 0.00 0.00 39.80 3.86
2067 10235 5.422650 ACTCCCATTTAGTCTTCTACTCCAC 59.577 44.000 0.00 0.00 39.80 4.02
2068 10236 5.590818 TCCCATTTAGTCTTCTACTCCACT 58.409 41.667 0.00 0.00 39.80 4.00
2069 10237 6.738635 TCCCATTTAGTCTTCTACTCCACTA 58.261 40.000 0.00 0.00 39.80 2.74
2070 10238 7.363031 TCCCATTTAGTCTTCTACTCCACTAT 58.637 38.462 0.00 0.00 39.80 2.12
2071 10239 7.844779 TCCCATTTAGTCTTCTACTCCACTATT 59.155 37.037 0.00 0.00 39.80 1.73
2072 10240 7.928706 CCCATTTAGTCTTCTACTCCACTATTG 59.071 40.741 0.00 0.00 39.80 1.90
2073 10241 8.696374 CCATTTAGTCTTCTACTCCACTATTGA 58.304 37.037 0.00 0.00 39.80 2.57
2074 10242 9.743057 CATTTAGTCTTCTACTCCACTATTGAG 57.257 37.037 0.00 0.00 39.80 3.02
2075 10243 8.880991 TTTAGTCTTCTACTCCACTATTGAGT 57.119 34.615 0.00 0.00 44.85 3.41
2076 10244 9.970553 TTTAGTCTTCTACTCCACTATTGAGTA 57.029 33.333 0.00 0.00 42.78 2.59
2154 10330 3.741344 CGCGACTTATATTTTGGGAGGAG 59.259 47.826 0.00 0.00 0.00 3.69
2155 10331 4.065789 GCGACTTATATTTTGGGAGGAGG 58.934 47.826 0.00 0.00 0.00 4.30
2156 10332 4.065789 CGACTTATATTTTGGGAGGAGGC 58.934 47.826 0.00 0.00 0.00 4.70
2158 10334 5.053978 ACTTATATTTTGGGAGGAGGCAG 57.946 43.478 0.00 0.00 0.00 4.85
2163 10339 3.926058 TTTTGGGAGGAGGCAGTATAC 57.074 47.619 0.00 0.00 0.00 1.47
2167 10343 1.972075 GGGAGGAGGCAGTATACTTCC 59.028 57.143 13.16 13.16 0.00 3.46
2175 10351 2.223994 GGCAGTATACTTCCTCCGTTCC 60.224 54.545 13.70 0.00 0.00 3.62
2176 10352 2.694109 GCAGTATACTTCCTCCGTTCCT 59.306 50.000 1.56 0.00 0.00 3.36
2178 10354 4.340381 GCAGTATACTTCCTCCGTTCCTAA 59.660 45.833 1.56 0.00 0.00 2.69
2180 10356 6.462628 GCAGTATACTTCCTCCGTTCCTAAAT 60.463 42.308 1.56 0.00 0.00 1.40
2183 10359 9.377238 AGTATACTTCCTCCGTTCCTAAATATT 57.623 33.333 0.00 0.00 0.00 1.28
2185 10361 8.904099 ATACTTCCTCCGTTCCTAAATATTTG 57.096 34.615 11.05 1.40 0.00 2.32
2187 10363 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2189 10365 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
2190 10366 7.046033 TCCTCCGTTCCTAAATATTTGTCTTC 58.954 38.462 11.05 0.00 0.00 2.87
2191 10367 6.260271 CCTCCGTTCCTAAATATTTGTCTTCC 59.740 42.308 11.05 0.00 0.00 3.46
2195 10371 7.226128 CCGTTCCTAAATATTTGTCTTCCTACC 59.774 40.741 11.05 0.00 0.00 3.18
2197 10373 9.628500 GTTCCTAAATATTTGTCTTCCTACCAT 57.372 33.333 11.05 0.00 0.00 3.55
2198 10374 9.847224 TTCCTAAATATTTGTCTTCCTACCATC 57.153 33.333 11.05 0.00 0.00 3.51
2200 10376 9.495572 CCTAAATATTTGTCTTCCTACCATCTC 57.504 37.037 11.05 0.00 0.00 2.75
2204 10380 9.927081 AATATTTGTCTTCCTACCATCTCAAAT 57.073 29.630 0.00 0.00 37.75 2.32
2205 10381 7.636150 ATTTGTCTTCCTACCATCTCAAATG 57.364 36.000 0.00 0.00 34.47 2.32
2206 10382 4.517285 TGTCTTCCTACCATCTCAAATGC 58.483 43.478 0.00 0.00 0.00 3.56
2207 10383 4.019411 TGTCTTCCTACCATCTCAAATGCA 60.019 41.667 0.00 0.00 0.00 3.96
2209 10385 4.225942 TCTTCCTACCATCTCAAATGCACT 59.774 41.667 0.00 0.00 0.00 4.40
2210 10386 5.425217 TCTTCCTACCATCTCAAATGCACTA 59.575 40.000 0.00 0.00 0.00 2.74
2211 10387 5.023533 TCCTACCATCTCAAATGCACTAC 57.976 43.478 0.00 0.00 0.00 2.73
2213 10389 5.045942 TCCTACCATCTCAAATGCACTACAA 60.046 40.000 0.00 0.00 0.00 2.41
2214 10390 5.065218 CCTACCATCTCAAATGCACTACAAC 59.935 44.000 0.00 0.00 0.00 3.32
2217 10393 6.179756 ACCATCTCAAATGCACTACAACATA 58.820 36.000 0.00 0.00 0.00 2.29
2220 10396 4.629634 TCTCAAATGCACTACAACATACGG 59.370 41.667 0.00 0.00 0.00 4.02
2221 10397 4.570930 TCAAATGCACTACAACATACGGA 58.429 39.130 0.00 0.00 0.00 4.69
2222 10398 5.182487 TCAAATGCACTACAACATACGGAT 58.818 37.500 0.00 0.00 0.00 4.18
2223 10399 5.064579 TCAAATGCACTACAACATACGGATG 59.935 40.000 5.94 5.94 39.16 3.51
2225 10401 4.722361 TGCACTACAACATACGGATGTA 57.278 40.909 15.10 0.00 45.93 2.29
2227 10403 6.394025 TGCACTACAACATACGGATGTATA 57.606 37.500 15.10 8.98 45.93 1.47
2232 10408 9.770503 CACTACAACATACGGATGTATATAGAC 57.229 37.037 23.06 0.00 45.93 2.59
2264 10566 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
2266 10568 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
2267 10569 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
2272 10574 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2275 10577 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2276 10578 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
2278 10580 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
2281 10583 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
2282 10584 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
2286 10588 5.350365 GCTCCGTATGTAGTCATTTGTTGAA 59.650 40.000 0.00 0.00 35.70 2.69
2287 10589 6.128391 GCTCCGTATGTAGTCATTTGTTGAAA 60.128 38.462 0.00 0.00 35.70 2.69
2289 10591 7.970384 TCCGTATGTAGTCATTTGTTGAAATC 58.030 34.615 0.00 0.00 35.70 2.17
2291 10593 8.116753 CCGTATGTAGTCATTTGTTGAAATCTC 58.883 37.037 0.00 0.00 35.70 2.75
2292 10594 8.873830 CGTATGTAGTCATTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 35.70 3.10
2296 10598 9.996554 TGTAGTCATTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 35.70 2.10
2299 10601 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
2300 10602 9.818796 GTCATTTGTTGAAATCTCTAGAAAGAC 57.181 33.333 0.00 0.00 35.70 3.01
2301 10603 9.559732 TCATTTGTTGAAATCTCTAGAAAGACA 57.440 29.630 0.00 0.00 28.65 3.41
2316 10618 9.189156 TCTAGAAAGACAATTATTTGGGAATGG 57.811 33.333 0.00 0.00 37.15 3.16
2317 10619 9.189156 CTAGAAAGACAATTATTTGGGAATGGA 57.811 33.333 2.66 0.00 37.15 3.41
2318 10620 8.071177 AGAAAGACAATTATTTGGGAATGGAG 57.929 34.615 2.66 0.00 37.15 3.86
2319 10621 6.796785 AAGACAATTATTTGGGAATGGAGG 57.203 37.500 2.66 0.00 37.15 4.30
2320 10622 5.211201 AGACAATTATTTGGGAATGGAGGG 58.789 41.667 2.66 0.00 37.15 4.30
2324 10626 6.068498 ACAATTATTTGGGAATGGAGGGAGTA 60.068 38.462 2.66 0.00 37.15 2.59
2325 10627 5.646692 TTATTTGGGAATGGAGGGAGTAG 57.353 43.478 0.00 0.00 0.00 2.57
2326 10628 2.661176 TTGGGAATGGAGGGAGTAGT 57.339 50.000 0.00 0.00 0.00 2.73
2327 10629 3.788116 TTGGGAATGGAGGGAGTAGTA 57.212 47.619 0.00 0.00 0.00 1.82
2328 10630 4.295905 TTGGGAATGGAGGGAGTAGTAT 57.704 45.455 0.00 0.00 0.00 2.12
2329 10631 5.427857 TTGGGAATGGAGGGAGTAGTATA 57.572 43.478 0.00 0.00 0.00 1.47
2346 11070 5.118729 AGTATACTGTCTGCTACTGGTCT 57.881 43.478 4.10 0.00 0.00 3.85
2710 12702 6.435430 TCTGATTGTAAATGAATTGACGGG 57.565 37.500 0.00 0.00 0.00 5.28
2950 12965 2.669569 CAGCGACCACACCAAGGG 60.670 66.667 0.00 0.00 0.00 3.95
3013 13070 0.695462 ATCCTCAGCTACATGGGCCA 60.695 55.000 9.61 9.61 0.00 5.36
3024 13081 2.300967 ATGGGCCACTCATCCACGT 61.301 57.895 9.28 0.00 32.90 4.49
3039 13096 3.009140 CGTCATCGTGCAGGCATC 58.991 61.111 0.35 0.00 0.00 3.91
3245 13338 2.177531 GCGTACGAGCTCAACGGA 59.822 61.111 29.20 7.37 37.12 4.69
3255 13348 0.885196 GCTCAACGGACTCTCTGACT 59.115 55.000 0.00 0.00 0.00 3.41
3262 13355 1.306642 GGACTCTCTGACTCCGCGAA 61.307 60.000 8.23 0.00 0.00 4.70
3421 13524 1.939785 CATCGCTACACGCCGACTC 60.940 63.158 0.00 0.00 43.23 3.36
3424 13527 2.408022 GCTACACGCCGACTCGAT 59.592 61.111 0.00 0.00 0.00 3.59
3430 13533 1.133598 ACACGCCGACTCGATGATAAA 59.866 47.619 0.00 0.00 0.00 1.40
3483 13586 4.096532 GTCCTAGCCCAAACTTGCTTATTC 59.903 45.833 0.00 0.00 39.00 1.75
3484 13587 4.016444 CCTAGCCCAAACTTGCTTATTCA 58.984 43.478 0.00 0.00 39.00 2.57
3485 13588 4.462483 CCTAGCCCAAACTTGCTTATTCAA 59.538 41.667 0.00 0.00 39.00 2.69
3486 13589 5.127682 CCTAGCCCAAACTTGCTTATTCAAT 59.872 40.000 0.00 0.00 39.00 2.57
3487 13590 5.077134 AGCCCAAACTTGCTTATTCAATC 57.923 39.130 0.00 0.00 32.94 2.67
3488 13591 3.859386 GCCCAAACTTGCTTATTCAATCG 59.141 43.478 0.00 0.00 0.00 3.34
3489 13592 3.859386 CCCAAACTTGCTTATTCAATCGC 59.141 43.478 0.00 0.00 0.00 4.58
3490 13593 4.484236 CCAAACTTGCTTATTCAATCGCA 58.516 39.130 0.00 0.00 0.00 5.10
3491 13594 4.922692 CCAAACTTGCTTATTCAATCGCAA 59.077 37.500 6.79 6.79 39.77 4.85
3564 13668 7.957002 ACAGGAGTGTCCAGATTATACATAAG 58.043 38.462 0.00 0.00 39.61 1.73
3608 13712 7.704472 TGTCCAAAGAAATGTTGTCATACAAAC 59.296 33.333 0.00 0.00 40.15 2.93
3666 13770 6.206042 AGGAGGTCCTATTCAAAGACTACAT 58.794 40.000 0.00 0.00 46.48 2.29
3677 13781 8.682936 ATTCAAAGACTACATAACCATCCATC 57.317 34.615 0.00 0.00 0.00 3.51
3687 13791 5.836898 ACATAACCATCCATCATTGCAGAAT 59.163 36.000 0.00 0.00 0.00 2.40
3695 13799 3.571401 CCATCATTGCAGAATACCTTCCC 59.429 47.826 0.00 0.00 31.27 3.97
3700 13804 0.548510 GCAGAATACCTTCCCCTGCT 59.451 55.000 0.00 0.00 44.75 4.24
3718 13822 2.015587 GCTGGAGCCTTCTTCATCAAG 58.984 52.381 0.00 0.00 34.31 3.02
3730 13834 5.963176 TCTTCATCAAGTTTGCTGCAATA 57.037 34.783 16.77 4.61 0.00 1.90
3736 13840 4.808558 TCAAGTTTGCTGCAATAATGACC 58.191 39.130 16.77 0.00 0.00 4.02
3742 13846 3.090790 TGCTGCAATAATGACCATGTGT 58.909 40.909 0.00 0.00 0.00 3.72
3770 13874 3.181329 TCCTCTTTGGACTATGCCTTCA 58.819 45.455 0.00 0.00 40.56 3.02
3774 13878 5.420104 CCTCTTTGGACTATGCCTTCAAAAT 59.580 40.000 0.00 0.00 38.35 1.82
3783 13887 7.385478 GGACTATGCCTTCAAAATAGTAGCTAC 59.615 40.741 16.43 16.43 37.27 3.58
3784 13888 8.024145 ACTATGCCTTCAAAATAGTAGCTACT 57.976 34.615 28.50 28.50 35.79 2.57
3785 13889 9.144298 ACTATGCCTTCAAAATAGTAGCTACTA 57.856 33.333 30.67 30.67 42.43 1.82
3786 13890 9.413048 CTATGCCTTCAAAATAGTAGCTACTAC 57.587 37.037 31.06 17.42 41.18 2.73
3787 13891 6.579865 TGCCTTCAAAATAGTAGCTACTACC 58.420 40.000 31.06 13.60 41.18 3.18
3788 13892 6.383147 TGCCTTCAAAATAGTAGCTACTACCT 59.617 38.462 31.06 20.13 41.18 3.08
3789 13893 6.924612 GCCTTCAAAATAGTAGCTACTACCTC 59.075 42.308 31.06 12.07 41.18 3.85
3790 13894 7.435305 CCTTCAAAATAGTAGCTACTACCTCC 58.565 42.308 31.06 1.40 41.18 4.30
3791 13895 6.630444 TCAAAATAGTAGCTACTACCTCCG 57.370 41.667 31.06 19.56 41.18 4.63
3792 13896 6.125029 TCAAAATAGTAGCTACTACCTCCGT 58.875 40.000 31.06 14.81 41.18 4.69
3793 13897 6.604795 TCAAAATAGTAGCTACTACCTCCGTT 59.395 38.462 31.06 19.22 41.18 4.44
3794 13898 6.631971 AAATAGTAGCTACTACCTCCGTTC 57.368 41.667 31.06 0.00 41.18 3.95
3795 13899 3.929955 AGTAGCTACTACCTCCGTTCT 57.070 47.619 24.97 0.00 37.65 3.01
3796 13900 3.543665 AGTAGCTACTACCTCCGTTCTG 58.456 50.000 24.97 0.00 37.65 3.02
3797 13901 1.765230 AGCTACTACCTCCGTTCTGG 58.235 55.000 0.00 0.00 40.09 3.86
3798 13902 1.005687 AGCTACTACCTCCGTTCTGGT 59.994 52.381 0.00 0.00 39.52 4.00
3799 13903 1.823610 GCTACTACCTCCGTTCTGGTT 59.176 52.381 0.00 0.00 39.52 3.67
3800 13904 2.233186 GCTACTACCTCCGTTCTGGTTT 59.767 50.000 0.00 0.00 39.52 3.27
3801 13905 3.445096 GCTACTACCTCCGTTCTGGTTTA 59.555 47.826 0.00 0.00 39.52 2.01
3802 13906 4.099113 GCTACTACCTCCGTTCTGGTTTAT 59.901 45.833 0.00 0.00 39.52 1.40
3803 13907 5.394993 GCTACTACCTCCGTTCTGGTTTATT 60.395 44.000 0.00 0.00 39.52 1.40
3804 13908 4.828829 ACTACCTCCGTTCTGGTTTATTG 58.171 43.478 0.00 0.00 39.52 1.90
3805 13909 3.067684 ACCTCCGTTCTGGTTTATTGG 57.932 47.619 0.00 0.00 39.52 3.16
3806 13910 2.374170 ACCTCCGTTCTGGTTTATTGGT 59.626 45.455 0.00 0.00 39.52 3.67
3807 13911 3.007635 CCTCCGTTCTGGTTTATTGGTC 58.992 50.000 0.00 0.00 39.52 4.02
3808 13912 3.007635 CTCCGTTCTGGTTTATTGGTCC 58.992 50.000 0.00 0.00 39.52 4.46
3809 13913 1.735571 CCGTTCTGGTTTATTGGTCCG 59.264 52.381 0.00 0.00 0.00 4.79
3810 13914 2.419667 CGTTCTGGTTTATTGGTCCGT 58.580 47.619 0.00 0.00 0.00 4.69
3811 13915 2.158841 CGTTCTGGTTTATTGGTCCGTG 59.841 50.000 0.00 0.00 0.00 4.94
3832 13936 6.072175 CCGTGGTCAGAAAGGATTGAAAAATA 60.072 38.462 0.00 0.00 0.00 1.40
3847 13951 7.670009 TTGAAAAATAATGATGTGGCTTTGG 57.330 32.000 0.00 0.00 0.00 3.28
3955 14059 8.338259 CGTATGAAATCCTGATACTTTGAAAGG 58.662 37.037 10.02 0.00 0.00 3.11
4013 14117 2.158726 TGCCGTAACCCTCTCAACTTTT 60.159 45.455 0.00 0.00 0.00 2.27
4103 14207 7.504403 TGAAATGCTTTTCAATTTTAGGGTCA 58.496 30.769 21.62 0.00 46.26 4.02
4153 14271 8.980610 TGCATGAAAAATAACAAATGAAGTCAG 58.019 29.630 0.00 0.00 0.00 3.51
4154 14272 9.195411 GCATGAAAAATAACAAATGAAGTCAGA 57.805 29.630 0.00 0.00 0.00 3.27
4162 14280 9.918630 AATAACAAATGAAGTCAGAAAGGATTG 57.081 29.630 0.00 0.00 0.00 2.67
4164 14282 7.587037 ACAAATGAAGTCAGAAAGGATTGAA 57.413 32.000 0.00 0.00 0.00 2.69
4165 14283 7.428826 ACAAATGAAGTCAGAAAGGATTGAAC 58.571 34.615 0.00 0.00 0.00 3.18
4168 14286 7.771927 ATGAAGTCAGAAAGGATTGAACAAT 57.228 32.000 0.00 0.00 0.00 2.71
4169 14287 6.973843 TGAAGTCAGAAAGGATTGAACAATG 58.026 36.000 4.72 0.00 0.00 2.82
4171 14289 7.449395 TGAAGTCAGAAAGGATTGAACAATGAT 59.551 33.333 4.72 0.00 0.00 2.45
4172 14290 7.154435 AGTCAGAAAGGATTGAACAATGATG 57.846 36.000 4.72 0.00 0.00 3.07
4173 14291 6.944290 AGTCAGAAAGGATTGAACAATGATGA 59.056 34.615 4.72 0.00 0.00 2.92
4174 14292 7.614583 AGTCAGAAAGGATTGAACAATGATGAT 59.385 33.333 4.72 0.00 0.00 2.45
4175 14293 7.701078 GTCAGAAAGGATTGAACAATGATGATG 59.299 37.037 4.72 0.00 0.00 3.07
4177 14295 7.488150 CAGAAAGGATTGAACAATGATGATGTG 59.512 37.037 4.72 0.00 0.00 3.21
4178 14296 7.395206 AGAAAGGATTGAACAATGATGATGTGA 59.605 33.333 4.72 0.00 0.00 3.58
4179 14297 6.446781 AGGATTGAACAATGATGATGTGAC 57.553 37.500 4.72 0.00 0.00 3.67
4180 14298 6.185511 AGGATTGAACAATGATGATGTGACT 58.814 36.000 4.72 0.00 0.00 3.41
4181 14299 6.662234 AGGATTGAACAATGATGATGTGACTT 59.338 34.615 4.72 0.00 0.00 3.01
4182 14300 7.177921 AGGATTGAACAATGATGATGTGACTTT 59.822 33.333 4.72 0.00 0.00 2.66
4183 14301 7.274904 GGATTGAACAATGATGATGTGACTTTG 59.725 37.037 4.72 0.00 0.00 2.77
4184 14302 6.880942 TGAACAATGATGATGTGACTTTGA 57.119 33.333 0.00 0.00 0.00 2.69
4185 14303 7.274603 TGAACAATGATGATGTGACTTTGAA 57.725 32.000 0.00 0.00 0.00 2.69
4186 14304 7.888424 TGAACAATGATGATGTGACTTTGAAT 58.112 30.769 0.00 0.00 0.00 2.57
4187 14305 7.810759 TGAACAATGATGATGTGACTTTGAATG 59.189 33.333 0.00 0.00 0.00 2.67
4188 14306 6.627243 ACAATGATGATGTGACTTTGAATGG 58.373 36.000 0.00 0.00 0.00 3.16
4189 14307 6.209986 ACAATGATGATGTGACTTTGAATGGT 59.790 34.615 0.00 0.00 0.00 3.55
4190 14308 5.632244 TGATGATGTGACTTTGAATGGTG 57.368 39.130 0.00 0.00 0.00 4.17
4191 14309 3.921119 TGATGTGACTTTGAATGGTGC 57.079 42.857 0.00 0.00 0.00 5.01
4194 14312 4.281435 TGATGTGACTTTGAATGGTGCATT 59.719 37.500 0.00 0.00 36.72 3.56
4196 14314 5.021033 TGTGACTTTGAATGGTGCATTTT 57.979 34.783 0.00 0.00 33.90 1.82
4197 14315 4.809958 TGTGACTTTGAATGGTGCATTTTG 59.190 37.500 0.00 0.00 33.90 2.44
4200 14318 5.523188 TGACTTTGAATGGTGCATTTTGAAC 59.477 36.000 0.00 0.00 33.90 3.18
4201 14319 5.426504 ACTTTGAATGGTGCATTTTGAACA 58.573 33.333 0.00 0.00 33.90 3.18
4202 14320 5.294060 ACTTTGAATGGTGCATTTTGAACAC 59.706 36.000 0.00 0.00 33.90 3.32
4203 14321 4.397481 TGAATGGTGCATTTTGAACACA 57.603 36.364 0.00 0.00 33.90 3.72
4204 14322 4.118410 TGAATGGTGCATTTTGAACACAC 58.882 39.130 0.00 0.00 33.90 3.82
4207 14325 3.930336 TGGTGCATTTTGAACACACAAA 58.070 36.364 0.00 0.00 37.87 2.83
4217 14335 5.713792 TTGAACACACAAAAAGTCAGGAA 57.286 34.783 0.00 0.00 0.00 3.36
4219 14337 6.279513 TGAACACACAAAAAGTCAGGAAAT 57.720 33.333 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.506802 GGGCAAATCTAAACGATCCCCTAT 60.507 45.833 0.00 0.00 30.79 2.57
3 4 1.954382 GGGCAAATCTAAACGATCCCC 59.046 52.381 0.00 0.00 30.79 4.81
4 5 1.954382 GGGGCAAATCTAAACGATCCC 59.046 52.381 0.00 0.00 34.43 3.85
5 6 2.618709 CAGGGGCAAATCTAAACGATCC 59.381 50.000 0.00 0.00 0.00 3.36
6 7 3.279434 ACAGGGGCAAATCTAAACGATC 58.721 45.455 0.00 0.00 0.00 3.69
7 8 3.366052 ACAGGGGCAAATCTAAACGAT 57.634 42.857 0.00 0.00 0.00 3.73
8 9 2.871096 ACAGGGGCAAATCTAAACGA 57.129 45.000 0.00 0.00 0.00 3.85
9 10 3.606687 ACTACAGGGGCAAATCTAAACG 58.393 45.455 0.00 0.00 0.00 3.60
10 11 6.427242 GCTATACTACAGGGGCAAATCTAAAC 59.573 42.308 0.00 0.00 0.00 2.01
11 12 6.329197 AGCTATACTACAGGGGCAAATCTAAA 59.671 38.462 0.00 0.00 0.00 1.85
12 13 5.844516 AGCTATACTACAGGGGCAAATCTAA 59.155 40.000 0.00 0.00 0.00 2.10
13 14 5.403512 AGCTATACTACAGGGGCAAATCTA 58.596 41.667 0.00 0.00 0.00 1.98
14 15 4.235372 AGCTATACTACAGGGGCAAATCT 58.765 43.478 0.00 0.00 0.00 2.40
15 16 4.625607 AGCTATACTACAGGGGCAAATC 57.374 45.455 0.00 0.00 0.00 2.17
16 17 4.412199 TCAAGCTATACTACAGGGGCAAAT 59.588 41.667 0.00 0.00 0.00 2.32
17 18 3.778075 TCAAGCTATACTACAGGGGCAAA 59.222 43.478 0.00 0.00 0.00 3.68
18 19 3.380393 TCAAGCTATACTACAGGGGCAA 58.620 45.455 0.00 0.00 0.00 4.52
19 20 3.040655 TCAAGCTATACTACAGGGGCA 57.959 47.619 0.00 0.00 0.00 5.36
20 21 4.417426 TTTCAAGCTATACTACAGGGGC 57.583 45.455 0.00 0.00 0.00 5.80
21 22 7.506114 TGTTATTTCAAGCTATACTACAGGGG 58.494 38.462 0.00 0.00 0.00 4.79
22 23 8.958119 TTGTTATTTCAAGCTATACTACAGGG 57.042 34.615 0.00 0.00 0.00 4.45
44 45 0.748005 ACAACGGCTGCTGACTTTGT 60.748 50.000 16.72 14.48 38.62 2.83
160 443 2.159000 TGTGCATATCTGTCTCCTGCTG 60.159 50.000 0.00 0.00 34.02 4.41
204 491 5.049543 GGATATTGATTCTGCAGCTCAGTTC 60.050 44.000 9.47 11.19 43.32 3.01
408 1123 6.844279 GCGTGACGTTGTCATAAATTATAAGG 59.156 38.462 6.91 0.00 44.63 2.69
452 1178 2.982744 GCTTGCCAGCCGTTTCTCC 61.983 63.158 0.00 0.00 40.61 3.71
468 1194 3.365364 GCAGAAAGTAAAAGATGTGCGCT 60.365 43.478 9.73 0.00 0.00 5.92
527 1290 5.924475 TTCTCTCTTTTCGTTCATGTTCC 57.076 39.130 0.00 0.00 0.00 3.62
553 1316 0.457166 CCATGGCGCTGTCATGTTTG 60.457 55.000 19.39 5.34 43.25 2.93
555 1318 2.048023 CCCATGGCGCTGTCATGTT 61.048 57.895 19.39 0.00 43.25 2.71
558 1321 2.687418 GATCCCCATGGCGCTGTCAT 62.687 60.000 6.09 0.00 0.00 3.06
559 1322 3.405093 GATCCCCATGGCGCTGTCA 62.405 63.158 6.09 0.00 0.00 3.58
560 1323 2.592861 GATCCCCATGGCGCTGTC 60.593 66.667 6.09 0.00 0.00 3.51
564 1327 2.124151 AACTGATCCCCATGGCGC 60.124 61.111 6.09 0.00 0.00 6.53
568 7113 1.745087 CAAACCGAACTGATCCCCATG 59.255 52.381 0.00 0.00 0.00 3.66
589 7134 1.152922 TCCACGAAAACCACACCCC 60.153 57.895 0.00 0.00 0.00 4.95
635 7198 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
693 7429 0.889186 TTGAGAGGGAAACGCCAAGC 60.889 55.000 0.00 0.00 38.95 4.01
883 7710 4.697352 CCTACAAAGCTAGCAACAACTGAT 59.303 41.667 18.83 0.00 0.00 2.90
898 7770 3.430929 CCACCTAGCTACAGCCTACAAAG 60.431 52.174 0.00 0.00 43.38 2.77
899 7771 2.500098 CCACCTAGCTACAGCCTACAAA 59.500 50.000 0.00 0.00 43.38 2.83
909 7782 5.283457 AGTGAAATGATCCACCTAGCTAC 57.717 43.478 0.00 0.00 34.00 3.58
941 7819 9.349713 CTAGAGGATAGATAAAGAAGACAGTGT 57.650 37.037 0.00 0.00 0.00 3.55
1071 7982 2.414994 TGACGAGGTAGTAGGTGAGG 57.585 55.000 0.00 0.00 0.00 3.86
1088 7999 0.397941 CTGTGAGGCCACCTTCTTGA 59.602 55.000 5.01 0.00 42.53 3.02
1121 8032 2.658593 CGATGTCGGGGATGACGC 60.659 66.667 0.00 0.00 41.87 5.19
1200 8114 0.753867 TGTGCAACGGGAGTGTAGAA 59.246 50.000 0.00 0.00 46.69 2.10
1611 8652 5.617252 GGAGAGACTGTAGTAGTAGAGCAT 58.383 45.833 1.69 0.00 40.53 3.79
1634 8681 1.771848 GCGACGTACTACAGTATTGCG 59.228 52.381 6.84 6.84 32.54 4.85
1736 8993 7.541162 ACACAGAAAGTATATGCGTACAGTAA 58.459 34.615 0.00 0.00 0.00 2.24
1813 9088 2.593436 CAACCACCACCCGGACAC 60.593 66.667 0.73 0.00 35.59 3.67
1953 9874 1.258982 CAACGATTATGTCTGCTCGCC 59.741 52.381 0.00 0.00 34.60 5.54
2115 10291 0.031994 GCGGTTGACTTTGCATGGTT 59.968 50.000 0.00 0.00 0.00 3.67
2117 10293 1.442520 CGCGGTTGACTTTGCATGG 60.443 57.895 0.00 0.00 0.00 3.66
2154 10330 2.223994 GGAACGGAGGAAGTATACTGCC 60.224 54.545 21.18 21.18 42.37 4.85
2155 10331 2.694109 AGGAACGGAGGAAGTATACTGC 59.306 50.000 6.06 3.81 0.00 4.40
2156 10332 6.461110 TTTAGGAACGGAGGAAGTATACTG 57.539 41.667 6.06 0.00 0.00 2.74
2158 10334 9.993454 AAATATTTAGGAACGGAGGAAGTATAC 57.007 33.333 0.00 0.00 0.00 1.47
2163 10339 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
2167 10343 7.048512 AGGAAGACAAATATTTAGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
2178 10354 9.927081 ATTTGAGATGGTAGGAAGACAAATATT 57.073 29.630 0.00 0.00 35.79 1.28
2180 10356 7.283127 GCATTTGAGATGGTAGGAAGACAAATA 59.717 37.037 0.00 0.00 35.79 1.40
2183 10359 4.943705 GCATTTGAGATGGTAGGAAGACAA 59.056 41.667 0.00 0.00 0.00 3.18
2185 10361 4.333926 GTGCATTTGAGATGGTAGGAAGAC 59.666 45.833 0.00 0.00 0.00 3.01
2187 10363 4.521146 AGTGCATTTGAGATGGTAGGAAG 58.479 43.478 0.00 0.00 0.00 3.46
2189 10365 4.469586 TGTAGTGCATTTGAGATGGTAGGA 59.530 41.667 0.00 0.00 0.00 2.94
2190 10366 4.769688 TGTAGTGCATTTGAGATGGTAGG 58.230 43.478 0.00 0.00 0.00 3.18
2191 10367 5.643348 TGTTGTAGTGCATTTGAGATGGTAG 59.357 40.000 0.00 0.00 0.00 3.18
2195 10371 6.187480 CGTATGTTGTAGTGCATTTGAGATG 58.813 40.000 0.00 0.00 0.00 2.90
2197 10373 4.629634 CCGTATGTTGTAGTGCATTTGAGA 59.370 41.667 0.00 0.00 0.00 3.27
2198 10374 4.629634 TCCGTATGTTGTAGTGCATTTGAG 59.370 41.667 0.00 0.00 0.00 3.02
2200 10376 4.937696 TCCGTATGTTGTAGTGCATTTG 57.062 40.909 0.00 0.00 0.00 2.32
2204 10380 3.603158 ACATCCGTATGTTGTAGTGCA 57.397 42.857 0.00 0.00 44.07 4.57
2205 10381 8.456471 TCTATATACATCCGTATGTTGTAGTGC 58.544 37.037 0.00 0.00 44.07 4.40
2206 10382 9.770503 GTCTATATACATCCGTATGTTGTAGTG 57.229 37.037 0.00 0.00 44.07 2.74
2207 10383 9.511272 TGTCTATATACATCCGTATGTTGTAGT 57.489 33.333 0.00 0.00 44.07 2.73
2210 10386 8.803235 ACATGTCTATATACATCCGTATGTTGT 58.197 33.333 0.00 0.00 44.07 3.32
2211 10387 9.639601 AACATGTCTATATACATCCGTATGTTG 57.360 33.333 0.00 0.00 44.07 3.33
2238 10414 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
2239 10415 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
2241 10417 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
2243 10419 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
2244 10420 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2245 10421 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2248 10546 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2251 10549 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2252 10550 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
2258 10560 5.703592 ACAAATGACTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 35.50 2.44
2259 10561 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
2262 10564 4.868171 TCAACAAATGACTACATACGGAGC 59.132 41.667 0.00 0.00 35.50 4.70
2263 10565 6.961359 TTCAACAAATGACTACATACGGAG 57.039 37.500 0.00 0.00 37.92 4.63
2264 10566 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
2266 10568 8.873830 AGAGATTTCAACAAATGACTACATACG 58.126 33.333 0.00 0.00 37.92 3.06
2275 10577 9.559732 TGTCTTTCTAGAGATTTCAACAAATGA 57.440 29.630 0.00 0.00 31.94 2.57
2291 10593 9.189156 TCCATTCCCAAATAATTGTCTTTCTAG 57.811 33.333 0.00 0.00 34.60 2.43
2292 10594 9.189156 CTCCATTCCCAAATAATTGTCTTTCTA 57.811 33.333 0.00 0.00 34.60 2.10
2293 10595 7.124750 CCTCCATTCCCAAATAATTGTCTTTCT 59.875 37.037 0.00 0.00 34.60 2.52
2294 10596 7.267857 CCTCCATTCCCAAATAATTGTCTTTC 58.732 38.462 0.00 0.00 34.60 2.62
2295 10597 6.156775 CCCTCCATTCCCAAATAATTGTCTTT 59.843 38.462 0.00 0.00 34.60 2.52
2296 10598 5.662657 CCCTCCATTCCCAAATAATTGTCTT 59.337 40.000 0.00 0.00 34.60 3.01
2297 10599 5.043432 TCCCTCCATTCCCAAATAATTGTCT 60.043 40.000 0.00 0.00 34.60 3.41
2298 10600 5.208121 TCCCTCCATTCCCAAATAATTGTC 58.792 41.667 0.00 0.00 34.60 3.18
2299 10601 5.211201 CTCCCTCCATTCCCAAATAATTGT 58.789 41.667 0.00 0.00 34.60 2.71
2300 10602 5.211201 ACTCCCTCCATTCCCAAATAATTG 58.789 41.667 0.00 0.00 36.25 2.32
2301 10603 5.487861 ACTCCCTCCATTCCCAAATAATT 57.512 39.130 0.00 0.00 0.00 1.40
2302 10604 5.676811 ACTACTCCCTCCATTCCCAAATAAT 59.323 40.000 0.00 0.00 0.00 1.28
2303 10605 5.043762 ACTACTCCCTCCATTCCCAAATAA 58.956 41.667 0.00 0.00 0.00 1.40
2305 10607 3.474920 ACTACTCCCTCCATTCCCAAAT 58.525 45.455 0.00 0.00 0.00 2.32
2309 10611 4.773149 CAGTATACTACTCCCTCCATTCCC 59.227 50.000 4.74 0.00 36.76 3.97
2310 10612 5.395611 ACAGTATACTACTCCCTCCATTCC 58.604 45.833 4.74 0.00 36.76 3.01
2311 10613 6.207810 CAGACAGTATACTACTCCCTCCATTC 59.792 46.154 4.74 0.00 36.76 2.67
2313 10615 5.636123 CAGACAGTATACTACTCCCTCCAT 58.364 45.833 4.74 0.00 36.76 3.41
2314 10616 4.689150 GCAGACAGTATACTACTCCCTCCA 60.689 50.000 4.74 0.00 36.76 3.86
2316 10618 4.721132 AGCAGACAGTATACTACTCCCTC 58.279 47.826 4.74 0.00 36.76 4.30
2317 10619 4.799715 AGCAGACAGTATACTACTCCCT 57.200 45.455 4.74 4.61 36.76 4.20
2318 10620 5.470777 CAGTAGCAGACAGTATACTACTCCC 59.529 48.000 4.74 2.63 41.11 4.30
2319 10621 5.470777 CCAGTAGCAGACAGTATACTACTCC 59.529 48.000 4.74 0.00 41.11 3.85
2320 10622 6.056884 ACCAGTAGCAGACAGTATACTACTC 58.943 44.000 4.74 3.49 41.11 2.59
2324 10626 5.118729 AGACCAGTAGCAGACAGTATACT 57.881 43.478 0.00 0.00 0.00 2.12
2325 10627 6.939132 TTAGACCAGTAGCAGACAGTATAC 57.061 41.667 0.00 0.00 0.00 1.47
2326 10628 8.438373 ACTATTAGACCAGTAGCAGACAGTATA 58.562 37.037 0.00 0.00 0.00 1.47
2327 10629 7.229707 CACTATTAGACCAGTAGCAGACAGTAT 59.770 40.741 0.00 0.00 0.00 2.12
2328 10630 6.542735 CACTATTAGACCAGTAGCAGACAGTA 59.457 42.308 0.00 0.00 0.00 2.74
2329 10631 5.358442 CACTATTAGACCAGTAGCAGACAGT 59.642 44.000 0.00 0.00 0.00 3.55
2346 11070 5.065474 GCGTGCAAATTAAGGTCCACTATTA 59.935 40.000 0.00 0.00 0.00 0.98
2359 11087 0.793861 GTGTCTCCGCGTGCAAATTA 59.206 50.000 4.92 0.00 0.00 1.40
2360 11088 1.574428 GTGTCTCCGCGTGCAAATT 59.426 52.632 4.92 0.00 0.00 1.82
2469 11744 4.437390 GCATGCATGTACGCCCTTTATATC 60.437 45.833 26.79 1.51 0.00 1.63
2470 11745 3.440173 GCATGCATGTACGCCCTTTATAT 59.560 43.478 26.79 0.00 0.00 0.86
2710 12702 5.163581 ACCTGCGTATATCATACGGATAACC 60.164 44.000 17.56 3.71 41.66 2.85
2747 12747 4.131088 GACGGCGACTGGTCTCCC 62.131 72.222 16.62 1.80 30.95 4.30
3024 13081 0.460811 GTCTGATGCCTGCACGATGA 60.461 55.000 0.00 0.00 0.00 2.92
3038 13095 3.565214 TTGGCGGGCTTGGTCTGA 61.565 61.111 2.38 0.00 0.00 3.27
3039 13096 3.365265 GTTGGCGGGCTTGGTCTG 61.365 66.667 2.38 0.00 0.00 3.51
3105 13162 2.348998 GTACAGGGTGCTGCTGCT 59.651 61.111 17.00 0.00 40.48 4.24
3245 13338 1.309499 CCTTCGCGGAGTCAGAGAGT 61.309 60.000 14.59 0.00 33.16 3.24
3255 13348 4.735132 CGTCTTGGCCTTCGCGGA 62.735 66.667 6.13 0.00 35.02 5.54
3262 13355 2.030562 CGTTGGTCGTCTTGGCCT 59.969 61.111 3.32 0.00 34.52 5.19
3421 13524 6.304126 ACAGCGTTAAAACAGTTTATCATCG 58.696 36.000 0.00 2.49 0.00 3.84
3424 13527 5.333492 CCGACAGCGTTAAAACAGTTTATCA 60.333 40.000 0.00 0.00 35.23 2.15
3430 13533 1.223187 CCCGACAGCGTTAAAACAGT 58.777 50.000 0.00 0.00 35.23 3.55
3515 13618 1.914634 CGTGCGATTGACTAAGCTCT 58.085 50.000 0.00 0.00 0.00 4.09
3516 13619 0.299003 GCGTGCGATTGACTAAGCTC 59.701 55.000 0.00 0.00 0.00 4.09
3518 13621 0.247301 GTGCGTGCGATTGACTAAGC 60.247 55.000 0.00 0.00 0.00 3.09
3519 13622 1.350193 AGTGCGTGCGATTGACTAAG 58.650 50.000 0.00 0.00 0.00 2.18
3520 13623 2.256174 GTAGTGCGTGCGATTGACTAA 58.744 47.619 0.00 0.00 0.00 2.24
3522 13625 0.038618 TGTAGTGCGTGCGATTGACT 60.039 50.000 0.00 0.00 0.00 3.41
3523 13626 0.366871 CTGTAGTGCGTGCGATTGAC 59.633 55.000 0.00 0.00 0.00 3.18
3564 13668 4.202295 TGGACATATTCACTCTGCATCTCC 60.202 45.833 0.00 0.00 0.00 3.71
3620 13724 9.843334 CTCCTCCATCTTACGTTATTTATCTAC 57.157 37.037 0.00 0.00 0.00 2.59
3633 13737 5.148502 TGAATAGGACCTCCTCCATCTTAC 58.851 45.833 0.00 0.00 44.77 2.34
3662 13766 5.939447 TCTGCAATGATGGATGGTTATGTA 58.061 37.500 0.00 0.00 0.00 2.29
3666 13770 5.769662 GGTATTCTGCAATGATGGATGGTTA 59.230 40.000 0.00 0.00 0.00 2.85
3677 13781 2.954318 CAGGGGAAGGTATTCTGCAATG 59.046 50.000 0.00 0.00 35.63 2.82
3687 13791 1.995626 GCTCCAGCAGGGGAAGGTA 60.996 63.158 0.00 0.00 37.73 3.08
3695 13799 0.255318 ATGAAGAAGGCTCCAGCAGG 59.745 55.000 0.03 0.00 44.36 4.85
3700 13804 3.795688 AACTTGATGAAGAAGGCTCCA 57.204 42.857 0.00 0.00 32.98 3.86
3718 13822 4.327898 CACATGGTCATTATTGCAGCAAAC 59.672 41.667 12.97 5.08 0.00 2.93
3736 13840 4.080919 TCCAAAGAGGACTATCCACACATG 60.081 45.833 0.00 0.00 43.07 3.21
3750 13854 3.634397 TGAAGGCATAGTCCAAAGAGG 57.366 47.619 0.00 0.00 39.47 3.69
3761 13865 8.365647 GGTAGTAGCTACTATTTTGAAGGCATA 58.634 37.037 31.04 7.87 40.55 3.14
3765 13869 7.435305 GGAGGTAGTAGCTACTATTTTGAAGG 58.565 42.308 31.04 0.00 40.55 3.46
3766 13870 7.140048 CGGAGGTAGTAGCTACTATTTTGAAG 58.860 42.308 31.04 17.57 40.55 3.02
3770 13874 6.832900 AGAACGGAGGTAGTAGCTACTATTTT 59.167 38.462 31.04 20.79 40.55 1.82
3774 13878 4.444022 CCAGAACGGAGGTAGTAGCTACTA 60.444 50.000 26.36 26.36 35.49 1.82
3783 13887 4.189231 CCAATAAACCAGAACGGAGGTAG 58.811 47.826 0.00 0.00 37.07 3.18
3784 13888 3.583966 ACCAATAAACCAGAACGGAGGTA 59.416 43.478 0.00 0.00 37.07 3.08
3785 13889 2.374170 ACCAATAAACCAGAACGGAGGT 59.626 45.455 0.00 0.00 40.61 3.85
3786 13890 3.007635 GACCAATAAACCAGAACGGAGG 58.992 50.000 0.00 0.00 38.63 4.30
3787 13891 3.007635 GGACCAATAAACCAGAACGGAG 58.992 50.000 0.00 0.00 38.63 4.63
3788 13892 2.613474 CGGACCAATAAACCAGAACGGA 60.613 50.000 0.00 0.00 38.63 4.69
3789 13893 1.735571 CGGACCAATAAACCAGAACGG 59.264 52.381 0.00 0.00 42.50 4.44
3790 13894 2.158841 CACGGACCAATAAACCAGAACG 59.841 50.000 0.00 0.00 0.00 3.95
3791 13895 2.486592 CCACGGACCAATAAACCAGAAC 59.513 50.000 0.00 0.00 0.00 3.01
3792 13896 2.106857 ACCACGGACCAATAAACCAGAA 59.893 45.455 0.00 0.00 0.00 3.02
3793 13897 1.700739 ACCACGGACCAATAAACCAGA 59.299 47.619 0.00 0.00 0.00 3.86
3794 13898 2.081462 GACCACGGACCAATAAACCAG 58.919 52.381 0.00 0.00 0.00 4.00
3795 13899 1.420514 TGACCACGGACCAATAAACCA 59.579 47.619 0.00 0.00 0.00 3.67
3796 13900 2.081462 CTGACCACGGACCAATAAACC 58.919 52.381 0.00 0.00 0.00 3.27
3797 13901 3.048337 TCTGACCACGGACCAATAAAC 57.952 47.619 0.00 0.00 0.00 2.01
3798 13902 3.773418 TTCTGACCACGGACCAATAAA 57.227 42.857 0.00 0.00 0.00 1.40
3799 13903 3.558321 CCTTTCTGACCACGGACCAATAA 60.558 47.826 0.00 0.00 0.00 1.40
3800 13904 2.027561 CCTTTCTGACCACGGACCAATA 60.028 50.000 0.00 0.00 0.00 1.90
3801 13905 1.271379 CCTTTCTGACCACGGACCAAT 60.271 52.381 0.00 0.00 0.00 3.16
3802 13906 0.107831 CCTTTCTGACCACGGACCAA 59.892 55.000 0.00 0.00 0.00 3.67
3803 13907 0.761323 TCCTTTCTGACCACGGACCA 60.761 55.000 0.00 0.00 0.00 4.02
3804 13908 0.613777 ATCCTTTCTGACCACGGACC 59.386 55.000 0.00 0.00 0.00 4.46
3805 13909 2.076863 CAATCCTTTCTGACCACGGAC 58.923 52.381 0.00 0.00 0.00 4.79
3806 13910 1.974957 TCAATCCTTTCTGACCACGGA 59.025 47.619 0.00 0.00 0.00 4.69
3807 13911 2.472695 TCAATCCTTTCTGACCACGG 57.527 50.000 0.00 0.00 0.00 4.94
3808 13912 4.829064 TTTTCAATCCTTTCTGACCACG 57.171 40.909 0.00 0.00 0.00 4.94
3809 13913 9.143631 CATTATTTTTCAATCCTTTCTGACCAC 57.856 33.333 0.00 0.00 0.00 4.16
3810 13914 9.087871 TCATTATTTTTCAATCCTTTCTGACCA 57.912 29.630 0.00 0.00 0.00 4.02
3832 13936 2.498481 CACCATCCAAAGCCACATCATT 59.502 45.455 0.00 0.00 0.00 2.57
3847 13951 3.715495 TGTGTGTTCAAAATGCACCATC 58.285 40.909 0.00 0.00 32.62 3.51
3955 14059 2.801679 TCGTGTACAAAACGGACAATCC 59.198 45.455 0.00 0.00 41.34 3.01
4146 14264 7.206981 TCATTGTTCAATCCTTTCTGACTTC 57.793 36.000 0.00 0.00 0.00 3.01
4149 14267 7.149569 TCATCATTGTTCAATCCTTTCTGAC 57.850 36.000 0.00 0.00 0.00 3.51
4151 14269 7.488150 CACATCATCATTGTTCAATCCTTTCTG 59.512 37.037 0.00 0.00 0.00 3.02
4153 14271 7.487189 GTCACATCATCATTGTTCAATCCTTTC 59.513 37.037 0.00 0.00 0.00 2.62
4154 14272 7.177921 AGTCACATCATCATTGTTCAATCCTTT 59.822 33.333 0.00 0.00 0.00 3.11
4158 14276 8.024865 TCAAAGTCACATCATCATTGTTCAATC 58.975 33.333 0.00 0.00 0.00 2.67
4160 14278 7.274603 TCAAAGTCACATCATCATTGTTCAA 57.725 32.000 0.00 0.00 0.00 2.69
4162 14280 7.274904 CCATTCAAAGTCACATCATCATTGTTC 59.725 37.037 0.00 0.00 0.00 3.18
4164 14282 6.209986 ACCATTCAAAGTCACATCATCATTGT 59.790 34.615 0.00 0.00 0.00 2.71
4165 14283 6.530181 CACCATTCAAAGTCACATCATCATTG 59.470 38.462 0.00 0.00 0.00 2.82
4168 14286 4.082625 GCACCATTCAAAGTCACATCATCA 60.083 41.667 0.00 0.00 0.00 3.07
4169 14287 4.082625 TGCACCATTCAAAGTCACATCATC 60.083 41.667 0.00 0.00 0.00 2.92
4171 14289 3.220940 TGCACCATTCAAAGTCACATCA 58.779 40.909 0.00 0.00 0.00 3.07
4172 14290 3.921119 TGCACCATTCAAAGTCACATC 57.079 42.857 0.00 0.00 0.00 3.06
4173 14291 4.877378 AATGCACCATTCAAAGTCACAT 57.123 36.364 0.00 0.00 26.27 3.21
4174 14292 4.669206 AAATGCACCATTCAAAGTCACA 57.331 36.364 0.00 0.00 32.43 3.58
4175 14293 5.049167 TCAAAATGCACCATTCAAAGTCAC 58.951 37.500 0.00 0.00 32.43 3.67
4177 14295 5.523188 TGTTCAAAATGCACCATTCAAAGTC 59.477 36.000 0.00 0.00 32.43 3.01
4178 14296 5.294060 GTGTTCAAAATGCACCATTCAAAGT 59.706 36.000 0.00 0.00 32.43 2.66
4179 14297 5.293814 TGTGTTCAAAATGCACCATTCAAAG 59.706 36.000 0.00 0.00 32.43 2.77
4180 14298 5.064452 GTGTGTTCAAAATGCACCATTCAAA 59.936 36.000 0.00 0.00 32.43 2.69
4181 14299 4.569966 GTGTGTTCAAAATGCACCATTCAA 59.430 37.500 0.00 0.00 32.43 2.69
4182 14300 4.118410 GTGTGTTCAAAATGCACCATTCA 58.882 39.130 0.00 0.00 32.43 2.57
4183 14301 4.118410 TGTGTGTTCAAAATGCACCATTC 58.882 39.130 0.00 0.00 32.43 2.67
4184 14302 4.134379 TGTGTGTTCAAAATGCACCATT 57.866 36.364 0.00 0.00 35.39 3.16
4185 14303 3.815856 TGTGTGTTCAAAATGCACCAT 57.184 38.095 0.00 0.00 32.62 3.55
4186 14304 3.599730 TTGTGTGTTCAAAATGCACCA 57.400 38.095 0.00 0.00 32.62 4.17
4187 14305 4.935885 TTTTGTGTGTTCAAAATGCACC 57.064 36.364 0.00 0.00 40.73 5.01
4188 14306 5.925907 ACTTTTTGTGTGTTCAAAATGCAC 58.074 33.333 13.60 0.00 43.60 4.57
4189 14307 5.698089 TGACTTTTTGTGTGTTCAAAATGCA 59.302 32.000 13.60 0.00 43.60 3.96
4190 14308 6.163159 TGACTTTTTGTGTGTTCAAAATGC 57.837 33.333 13.60 9.42 43.60 3.56
4191 14309 6.589523 TCCTGACTTTTTGTGTGTTCAAAATG 59.410 34.615 12.68 12.68 43.60 2.32
4194 14312 5.713792 TCCTGACTTTTTGTGTGTTCAAA 57.286 34.783 0.00 0.00 35.83 2.69
4196 14314 5.713792 TTTCCTGACTTTTTGTGTGTTCA 57.286 34.783 0.00 0.00 0.00 3.18
4197 14315 8.696410 TTAATTTCCTGACTTTTTGTGTGTTC 57.304 30.769 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.