Multiple sequence alignment - TraesCS7D01G062400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G062400 chr7D 100.000 5310 0 0 1 5310 34078368 34073059 0.000000e+00 9806.0
1 TraesCS7D01G062400 chr7D 87.189 1288 80 43 801 2056 34444595 34445829 0.000000e+00 1386.0
2 TraesCS7D01G062400 chr7D 95.109 552 17 5 819 1370 34152071 34151530 0.000000e+00 861.0
3 TraesCS7D01G062400 chr7D 88.472 746 38 20 6 738 34168941 34168231 0.000000e+00 857.0
4 TraesCS7D01G062400 chr7D 86.115 785 93 9 3780 4558 34446668 34447442 0.000000e+00 832.0
5 TraesCS7D01G062400 chr7D 93.028 545 27 8 1191 1732 34011782 34011246 0.000000e+00 785.0
6 TraesCS7D01G062400 chr7D 87.774 638 71 6 2102 2734 608632857 608633492 0.000000e+00 739.0
7 TraesCS7D01G062400 chr7D 86.957 667 45 23 1 650 34152779 34152138 0.000000e+00 712.0
8 TraesCS7D01G062400 chr7D 83.209 804 105 16 3780 4567 34010931 34010142 0.000000e+00 710.0
9 TraesCS7D01G062400 chr7D 90.267 524 33 9 2 523 34444012 34444519 0.000000e+00 669.0
10 TraesCS7D01G062400 chr7D 80.559 751 77 37 1 731 33753342 33754043 1.100000e-141 514.0
11 TraesCS7D01G062400 chr7D 85.805 472 48 9 3780 4242 34149977 34149516 3.100000e-132 483.0
12 TraesCS7D01G062400 chr7D 94.690 113 6 0 2733 2845 41297786 41297674 5.890000e-40 176.0
13 TraesCS7D01G062400 chr7D 100.000 93 0 0 677 769 34152141 34152049 7.620000e-39 172.0
14 TraesCS7D01G062400 chr7D 100.000 84 0 0 5640 5723 34072729 34072646 7.680000e-34 156.0
15 TraesCS7D01G062400 chr7D 90.566 106 4 3 676 780 34444538 34444638 1.000000e-27 135.0
16 TraesCS7D01G062400 chr7D 78.873 213 19 17 615 814 34012154 34011955 2.800000e-23 121.0
17 TraesCS7D01G062400 chr7D 86.364 66 9 0 5652 5717 164491991 164492056 7.950000e-09 73.1
18 TraesCS7D01G062400 chr4A 88.270 1509 122 26 3823 5310 690885071 690883597 0.000000e+00 1755.0
19 TraesCS7D01G062400 chr4A 85.856 1711 155 34 3403 5083 691152129 691153782 0.000000e+00 1738.0
20 TraesCS7D01G062400 chr4A 86.382 1241 81 46 877 2064 690938566 690937361 0.000000e+00 1275.0
21 TraesCS7D01G062400 chr4A 88.976 1025 49 26 887 1867 690689736 690688732 0.000000e+00 1208.0
22 TraesCS7D01G062400 chr4A 91.065 817 55 6 3956 4756 690879955 690879141 0.000000e+00 1088.0
23 TraesCS7D01G062400 chr4A 89.249 865 60 18 1184 2041 691150623 691151461 0.000000e+00 1051.0
24 TraesCS7D01G062400 chr4A 88.035 911 57 29 1179 2064 690881576 690880693 0.000000e+00 1031.0
25 TraesCS7D01G062400 chr4A 87.935 920 50 30 905 1794 691166216 691167104 0.000000e+00 1027.0
26 TraesCS7D01G062400 chr4A 87.220 892 55 24 4413 5285 690674473 690673622 0.000000e+00 961.0
27 TraesCS7D01G062400 chr4A 88.025 785 81 5 3780 4555 691168556 691169336 0.000000e+00 917.0
28 TraesCS7D01G062400 chr4A 86.321 848 80 15 3780 4612 690936840 690936014 0.000000e+00 891.0
29 TraesCS7D01G062400 chr4A 82.660 940 111 34 1187 2096 691246753 691247670 0.000000e+00 785.0
30 TraesCS7D01G062400 chr4A 82.511 932 103 43 1187 2096 691323846 691324739 0.000000e+00 763.0
31 TraesCS7D01G062400 chr4A 85.185 729 84 12 3643 4364 690687817 690687106 0.000000e+00 726.0
32 TraesCS7D01G062400 chr4A 90.433 554 23 21 1196 1738 691470116 691469582 0.000000e+00 702.0
33 TraesCS7D01G062400 chr4A 81.991 844 108 24 3780 4612 691325160 691325970 0.000000e+00 676.0
34 TraesCS7D01G062400 chr4A 88.163 566 32 12 1 563 691165418 691165951 4.830000e-180 641.0
35 TraesCS7D01G062400 chr4A 83.849 743 46 29 1 738 690690406 690689733 1.740000e-179 640.0
36 TraesCS7D01G062400 chr4A 81.772 779 103 16 3844 4612 691248498 691249247 2.930000e-172 616.0
37 TraesCS7D01G062400 chr4A 84.249 692 32 36 370 1051 690882238 690881614 2.280000e-168 603.0
38 TraesCS7D01G062400 chr4A 82.995 641 52 23 4 642 690732516 690731931 1.410000e-145 527.0
39 TraesCS7D01G062400 chr4A 92.201 359 26 1 4954 5310 691169387 691169745 1.840000e-139 507.0
40 TraesCS7D01G062400 chr4A 88.804 393 27 7 158 541 690888071 690887687 3.120000e-127 466.0
41 TraesCS7D01G062400 chr4A 92.903 310 17 2 1432 1740 690886705 690886400 4.070000e-121 446.0
42 TraesCS7D01G062400 chr4A 92.787 305 16 1 1 305 690882566 690882268 2.450000e-118 436.0
43 TraesCS7D01G062400 chr4A 92.620 271 14 1 1 271 690939188 690938924 9.000000e-103 385.0
44 TraesCS7D01G062400 chr4A 100.000 201 0 0 1170 1370 690886998 690886798 7.000000e-99 372.0
45 TraesCS7D01G062400 chr4A 91.822 269 16 2 37 305 691149893 691150155 2.520000e-98 370.0
46 TraesCS7D01G062400 chr4A 76.357 774 81 44 1 731 691471415 691470701 7.150000e-84 322.0
47 TraesCS7D01G062400 chr4A 88.433 268 5 7 358 623 690938877 690938634 3.350000e-77 300.0
48 TraesCS7D01G062400 chr4A 78.227 519 53 34 3806 4282 691468087 691467587 1.570000e-70 278.0
49 TraesCS7D01G062400 chr4A 91.707 205 3 2 875 1078 691150426 691150617 7.310000e-69 272.0
50 TraesCS7D01G062400 chr4A 83.929 280 17 15 355 629 691150170 691150426 5.730000e-60 243.0
51 TraesCS7D01G062400 chr4A 88.542 192 18 2 2882 3071 690688527 690688338 4.460000e-56 230.0
52 TraesCS7D01G062400 chr4A 93.706 143 9 0 4 146 690888595 690888453 1.250000e-51 215.0
53 TraesCS7D01G062400 chr4A 80.259 309 39 12 196 498 691246083 691246375 4.490000e-51 213.0
54 TraesCS7D01G062400 chr4A 94.068 118 6 1 1967 2083 690688713 690688596 1.640000e-40 178.0
55 TraesCS7D01G062400 chr4A 89.916 119 6 3 3244 3361 690688332 690688219 1.280000e-31 148.0
56 TraesCS7D01G062400 chr4A 93.548 93 5 1 1087 1179 690887134 690887043 2.780000e-28 137.0
57 TraesCS7D01G062400 chr4A 94.048 84 5 0 5640 5723 690883569 690883486 1.670000e-25 128.0
58 TraesCS7D01G062400 chr4A 82.353 153 13 7 583 735 690887689 690887551 2.800000e-23 121.0
59 TraesCS7D01G062400 chr4A 93.750 80 5 0 5640 5719 691169775 691169854 2.800000e-23 121.0
60 TraesCS7D01G062400 chr4A 94.286 70 4 0 3409 3478 690688201 690688132 2.180000e-19 108.0
61 TraesCS7D01G062400 chr4A 92.982 57 4 0 2040 2096 691151637 691151693 3.670000e-12 84.2
62 TraesCS7D01G062400 chr4A 89.062 64 6 1 686 749 691165950 691166012 1.710000e-10 78.7
63 TraesCS7D01G062400 chr4A 97.143 35 0 1 3603 3636 691248381 691248415 2.230000e-04 58.4
64 TraesCS7D01G062400 chr7A 87.917 960 89 15 3780 4722 34518220 34517271 0.000000e+00 1105.0
65 TraesCS7D01G062400 chr7A 93.272 654 28 7 1432 2083 34519358 34518719 0.000000e+00 950.0
66 TraesCS7D01G062400 chr7A 82.981 899 81 43 1196 2052 34106557 34105689 0.000000e+00 747.0
67 TraesCS7D01G062400 chr7A 87.960 598 37 15 795 1387 34520019 34519452 0.000000e+00 673.0
68 TraesCS7D01G062400 chr7A 82.123 716 97 15 3780 4488 34451047 34450356 8.260000e-163 584.0
69 TraesCS7D01G062400 chr7A 87.445 454 20 17 343 789 34520398 34519975 6.660000e-134 488.0
70 TraesCS7D01G062400 chr7A 93.355 301 16 3 1431 1731 34452242 34451946 5.260000e-120 442.0
71 TraesCS7D01G062400 chr7A 89.753 283 24 5 5031 5310 34517167 34516887 1.960000e-94 357.0
72 TraesCS7D01G062400 chr7A 92.083 240 13 1 40 279 34520621 34520388 3.300000e-87 333.0
73 TraesCS7D01G062400 chr7A 79.608 510 53 27 3806 4282 34104461 34103970 9.250000e-83 318.0
74 TraesCS7D01G062400 chr7A 94.643 112 4 2 2733 2842 695971146 695971257 7.620000e-39 172.0
75 TraesCS7D01G062400 chr7A 76.966 356 40 23 393 738 34453096 34452773 1.280000e-36 165.0
76 TraesCS7D01G062400 chr7A 88.608 79 7 2 370 446 34520273 34520195 1.700000e-15 95.3
77 TraesCS7D01G062400 chrUn 89.498 638 42 8 2122 2734 10242889 10243526 0.000000e+00 784.0
78 TraesCS7D01G062400 chr6D 93.762 513 30 2 2102 2612 339807382 339807894 0.000000e+00 769.0
79 TraesCS7D01G062400 chr6D 87.879 66 7 1 5644 5708 336497384 336497449 6.150000e-10 76.8
80 TraesCS7D01G062400 chr5D 93.230 517 32 2 2101 2615 379214373 379214888 0.000000e+00 758.0
81 TraesCS7D01G062400 chr5D 96.262 107 3 1 2733 2838 413493651 413493545 2.120000e-39 174.0
82 TraesCS7D01G062400 chr5A 87.692 650 63 13 2098 2736 681988073 681987430 0.000000e+00 741.0
83 TraesCS7D01G062400 chr5A 80.405 148 19 7 1228 1370 485207170 485207028 2.820000e-18 104.0
84 TraesCS7D01G062400 chr5A 88.889 54 6 0 1233 1286 666683652 666683599 3.700000e-07 67.6
85 TraesCS7D01G062400 chr5A 89.583 48 5 0 1239 1286 666656982 666656935 1.720000e-05 62.1
86 TraesCS7D01G062400 chr3B 91.535 508 41 2 2098 2603 826998224 826997717 0.000000e+00 699.0
87 TraesCS7D01G062400 chr7B 90.891 516 45 2 2099 2613 110106111 110106625 0.000000e+00 691.0
88 TraesCS7D01G062400 chr3A 86.992 615 59 15 2132 2734 687680876 687681481 0.000000e+00 673.0
89 TraesCS7D01G062400 chr2D 86.164 636 65 16 2111 2735 435337251 435337874 0.000000e+00 665.0
90 TraesCS7D01G062400 chr2D 99.029 103 1 0 2733 2835 107559504 107559606 9.790000e-43 185.0
91 TraesCS7D01G062400 chr2D 96.262 107 2 2 2733 2837 79089445 79089551 2.120000e-39 174.0
92 TraesCS7D01G062400 chr3D 98.058 103 2 0 2734 2836 607669480 607669378 4.560000e-41 180.0
93 TraesCS7D01G062400 chr3D 97.087 103 3 0 2733 2835 152404366 152404264 2.120000e-39 174.0
94 TraesCS7D01G062400 chr3D 97.087 103 3 0 2733 2835 588106621 588106723 2.120000e-39 174.0
95 TraesCS7D01G062400 chr3D 97.087 103 3 0 2733 2835 600417732 600417834 2.120000e-39 174.0
96 TraesCS7D01G062400 chr3D 90.984 122 9 2 2615 2734 588106536 588106657 4.590000e-36 163.0
97 TraesCS7D01G062400 chr2A 90.517 116 7 2 193 305 435647644 435647758 3.570000e-32 150.0
98 TraesCS7D01G062400 chr4B 78.947 133 24 4 1228 1358 381373849 381373979 2.840000e-13 87.9
99 TraesCS7D01G062400 chr4B 89.583 48 5 0 1239 1286 619589876 619589829 1.720000e-05 62.1
100 TraesCS7D01G062400 chr4B 89.583 48 5 0 1239 1286 619935720 619935673 1.720000e-05 62.1
101 TraesCS7D01G062400 chr1D 88.136 59 7 0 5652 5710 378312662 378312720 2.860000e-08 71.3
102 TraesCS7D01G062400 chr5B 95.349 43 2 0 1690 1732 653432888 653432930 1.030000e-07 69.4
103 TraesCS7D01G062400 chr6B 100.000 28 0 0 4661 4688 591238285 591238258 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G062400 chr7D 34072646 34078368 5722 True 4981.000000 9806 100.000000 1 5723 2 chr7D.!!$R4 5722
1 TraesCS7D01G062400 chr7D 34168231 34168941 710 True 857.000000 857 88.472000 6 738 1 chr7D.!!$R1 732
2 TraesCS7D01G062400 chr7D 34444012 34447442 3430 False 755.500000 1386 88.534250 2 4558 4 chr7D.!!$F4 4556
3 TraesCS7D01G062400 chr7D 608632857 608633492 635 False 739.000000 739 87.774000 2102 2734 1 chr7D.!!$F3 632
4 TraesCS7D01G062400 chr7D 34149516 34152779 3263 True 557.000000 861 91.967750 1 4242 4 chr7D.!!$R5 4241
5 TraesCS7D01G062400 chr7D 34010142 34012154 2012 True 538.666667 785 85.036667 615 4567 3 chr7D.!!$R3 3952
6 TraesCS7D01G062400 chr7D 33753342 33754043 701 False 514.000000 514 80.559000 1 731 1 chr7D.!!$F1 730
7 TraesCS7D01G062400 chr4A 690673622 690674473 851 True 961.000000 961 87.220000 4413 5285 1 chr4A.!!$R1 872
8 TraesCS7D01G062400 chr4A 691323846 691325970 2124 False 719.500000 763 82.251000 1187 4612 2 chr4A.!!$F4 3425
9 TraesCS7D01G062400 chr4A 690936014 690939188 3174 True 712.750000 1275 88.439000 1 4612 4 chr4A.!!$R5 4611
10 TraesCS7D01G062400 chr4A 691149893 691153782 3889 False 626.366667 1738 89.257500 37 5083 6 chr4A.!!$F1 5046
11 TraesCS7D01G062400 chr4A 690879141 690888595 9454 True 566.500000 1755 90.814000 1 5723 12 chr4A.!!$R4 5722
12 TraesCS7D01G062400 chr4A 691165418 691169854 4436 False 548.616667 1027 89.856000 1 5719 6 chr4A.!!$F2 5718
13 TraesCS7D01G062400 chr4A 690731931 690732516 585 True 527.000000 527 82.995000 4 642 1 chr4A.!!$R2 638
14 TraesCS7D01G062400 chr4A 690687106 690690406 3300 True 462.571429 1208 89.260286 1 4364 7 chr4A.!!$R3 4363
15 TraesCS7D01G062400 chr4A 691467587 691471415 3828 True 434.000000 702 81.672333 1 4282 3 chr4A.!!$R6 4281
16 TraesCS7D01G062400 chr4A 691246083 691249247 3164 False 418.100000 785 85.458500 196 4612 4 chr4A.!!$F3 4416
17 TraesCS7D01G062400 chr7A 34516887 34520621 3734 True 571.614286 1105 89.576857 40 5310 7 chr7A.!!$R3 5270
18 TraesCS7D01G062400 chr7A 34103970 34106557 2587 True 532.500000 747 81.294500 1196 4282 2 chr7A.!!$R1 3086
19 TraesCS7D01G062400 chr7A 34450356 34453096 2740 True 397.000000 584 84.148000 393 4488 3 chr7A.!!$R2 4095
20 TraesCS7D01G062400 chrUn 10242889 10243526 637 False 784.000000 784 89.498000 2122 2734 1 chrUn.!!$F1 612
21 TraesCS7D01G062400 chr6D 339807382 339807894 512 False 769.000000 769 93.762000 2102 2612 1 chr6D.!!$F2 510
22 TraesCS7D01G062400 chr5D 379214373 379214888 515 False 758.000000 758 93.230000 2101 2615 1 chr5D.!!$F1 514
23 TraesCS7D01G062400 chr5A 681987430 681988073 643 True 741.000000 741 87.692000 2098 2736 1 chr5A.!!$R4 638
24 TraesCS7D01G062400 chr3B 826997717 826998224 507 True 699.000000 699 91.535000 2098 2603 1 chr3B.!!$R1 505
25 TraesCS7D01G062400 chr7B 110106111 110106625 514 False 691.000000 691 90.891000 2099 2613 1 chr7B.!!$F1 514
26 TraesCS7D01G062400 chr3A 687680876 687681481 605 False 673.000000 673 86.992000 2132 2734 1 chr3A.!!$F1 602
27 TraesCS7D01G062400 chr2D 435337251 435337874 623 False 665.000000 665 86.164000 2111 2735 1 chr2D.!!$F3 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 1391 0.478507 CTCTCTCCCCCTCTCTCTCC 59.521 65.0 0.00 0.0 0.0 3.71 F
2709 9984 0.177373 GCAGAACCGGTACTAAGGGG 59.823 60.0 8.00 0.0 0.0 4.79 F
2810 10089 0.036306 AAGGGCCTTACGAACCAGTG 59.964 55.0 19.37 0.0 0.0 3.66 F
2843 10122 0.179000 CTGCACTAGTGATGGGTCCC 59.821 60.0 27.08 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2776 10055 0.036306 CCCTTTAGTGCCGGTTCTGT 59.964 55.000 1.90 0.00 0.00 3.41 R
3538 11484 0.776176 AATCCTGGATGGCTGGATCC 59.224 55.000 10.54 4.20 39.43 3.36 R
4541 13282 1.547901 GGCAAAGTTTGGGCTAGGACT 60.548 52.381 17.11 0.00 0.00 3.85 R
4798 13562 1.731709 TCGATGACTTCCGCACAATTG 59.268 47.619 3.24 3.24 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 126 1.669604 GCTTTTAGCTCCTGTAGGGC 58.330 55.000 0.00 1.02 38.45 5.19
312 721 0.673644 GGCTGGCAAAGTAAGCGAGA 60.674 55.000 1.36 0.00 39.79 4.04
323 736 2.424246 AGTAAGCGAGAACTGCTCCTAC 59.576 50.000 0.00 0.00 43.14 3.18
328 741 0.741915 GAGAACTGCTCCTACCCTCG 59.258 60.000 0.00 0.00 37.69 4.63
553 1041 1.001520 ACACATTGATCGACCGTTCCA 59.998 47.619 0.00 0.00 0.00 3.53
590 1078 1.301401 GACGGTGCTGTTGGTGCTA 60.301 57.895 0.00 0.00 0.00 3.49
756 1322 0.535102 CGGGAGCTCCTCTCTCTCTC 60.535 65.000 31.36 11.02 40.25 3.20
757 1323 0.846693 GGGAGCTCCTCTCTCTCTCT 59.153 60.000 31.36 0.00 39.29 3.10
758 1324 1.202818 GGGAGCTCCTCTCTCTCTCTC 60.203 61.905 31.36 7.09 39.29 3.20
759 1325 1.771255 GGAGCTCCTCTCTCTCTCTCT 59.229 57.143 26.25 0.00 41.60 3.10
760 1326 2.224402 GGAGCTCCTCTCTCTCTCTCTC 60.224 59.091 26.25 0.00 41.60 3.20
761 1327 2.703007 GAGCTCCTCTCTCTCTCTCTCT 59.297 54.545 0.87 0.00 38.78 3.10
762 1328 2.703007 AGCTCCTCTCTCTCTCTCTCTC 59.297 54.545 0.00 0.00 0.00 3.20
763 1329 2.703007 GCTCCTCTCTCTCTCTCTCTCT 59.297 54.545 0.00 0.00 0.00 3.10
764 1330 3.244044 GCTCCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
765 1331 4.222336 CTCCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
766 1332 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
767 1333 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
768 1334 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
769 1335 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
770 1336 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
771 1337 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
772 1338 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
773 1339 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
774 1340 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
775 1341 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
776 1342 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
777 1343 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
778 1344 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
779 1345 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
780 1346 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
781 1347 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
782 1348 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
783 1349 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
784 1350 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
785 1351 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
786 1352 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
787 1353 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
788 1354 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
789 1355 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
790 1356 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
791 1357 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
792 1358 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
793 1359 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
794 1360 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
795 1361 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
796 1362 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
797 1363 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
798 1364 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
799 1365 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
800 1366 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
801 1367 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
802 1368 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
803 1369 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
804 1370 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
805 1371 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
806 1372 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
807 1373 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
808 1374 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
809 1375 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
810 1376 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
811 1377 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
812 1378 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
813 1379 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
814 1380 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
815 1381 2.370189 CTCTCTCTCTCTCTCTCTCCCC 59.630 59.091 0.00 0.00 0.00 4.81
816 1382 1.421646 CTCTCTCTCTCTCTCTCCCCC 59.578 61.905 0.00 0.00 0.00 5.40
817 1383 1.010793 TCTCTCTCTCTCTCTCCCCCT 59.989 57.143 0.00 0.00 0.00 4.79
818 1384 1.421646 CTCTCTCTCTCTCTCCCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
819 1385 1.010793 TCTCTCTCTCTCTCCCCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
820 1386 1.421646 CTCTCTCTCTCTCCCCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
821 1387 1.010793 TCTCTCTCTCTCCCCCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
822 1388 1.421646 CTCTCTCTCTCCCCCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
823 1389 1.010793 TCTCTCTCTCCCCCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
824 1390 1.421646 CTCTCTCTCCCCCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
825 1391 0.478507 CTCTCTCCCCCTCTCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
826 1392 0.996762 TCTCTCCCCCTCTCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
827 1393 0.998945 CTCTCCCCCTCTCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
841 1408 3.051803 TCTCTCCCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
1399 2268 1.139853 ACTTCCTTCAGCCATCGATCC 59.860 52.381 0.00 0.00 0.00 3.36
1402 2273 1.964223 TCCTTCAGCCATCGATCCTAC 59.036 52.381 0.00 0.00 0.00 3.18
1429 2363 0.835941 CCCTCCACAATGCTAGCTCT 59.164 55.000 17.23 0.00 0.00 4.09
1525 2482 0.396435 TGGTACCTGTTCAGCCACAG 59.604 55.000 14.36 2.00 43.46 3.66
1622 2585 2.801631 GGCCATCTACTCTGCCGCT 61.802 63.158 0.00 0.00 33.59 5.52
1623 2586 1.593750 GCCATCTACTCTGCCGCTG 60.594 63.158 0.00 0.00 0.00 5.18
1624 2587 1.068753 CCATCTACTCTGCCGCTGG 59.931 63.158 0.00 0.00 0.00 4.85
1824 8233 0.963355 ACAGTCTCTCTCCGCCAGTC 60.963 60.000 0.00 0.00 0.00 3.51
1828 8237 2.438614 TCTCTCCGCCAGTCTCCG 60.439 66.667 0.00 0.00 0.00 4.63
1915 8506 1.695893 CGTTCGCTAGTGGTGCATGG 61.696 60.000 2.90 0.00 0.00 3.66
2011 8655 7.044641 CGACAAAGTCTAGTGAAGATTATGTCG 60.045 40.741 17.01 17.01 36.36 4.35
2071 9257 9.512588 TGGTGCAATGGAATTAATTGTAATTTT 57.487 25.926 5.17 0.00 39.53 1.82
2096 9290 3.116746 AGTGGGGACTGGGATTTTCTTTT 60.117 43.478 0.00 0.00 0.00 2.27
2162 9361 1.476488 GGTTTGTATTTGAGCCGGCAT 59.524 47.619 31.54 16.13 0.00 4.40
2175 9374 1.001378 GCCGGCATTAATGTGACCATC 60.001 52.381 24.80 0.00 0.00 3.51
2240 9440 2.735478 CGTGCCACGAACCGCTAA 60.735 61.111 12.85 0.00 46.05 3.09
2254 9454 1.940613 CCGCTAATAAAGAGGTGGTGC 59.059 52.381 0.00 0.00 40.15 5.01
2294 9494 3.516300 TGGCTCCAACCGATACTAAAGAA 59.484 43.478 0.00 0.00 0.00 2.52
2339 9544 1.624813 CACCAACCGGTACTAAAGGGA 59.375 52.381 8.00 0.00 46.94 4.20
2558 9799 1.480789 TTCTAGTCGTATGCAGGCCA 58.519 50.000 5.01 0.00 0.00 5.36
2638 9912 3.385111 CCAACCGATACTAAAGAGCTCCT 59.615 47.826 10.93 0.00 0.00 3.69
2644 9918 2.168458 ACTAAAGAGCTCCTCTCCCC 57.832 55.000 10.93 0.00 40.28 4.81
2706 9981 1.200716 TCGTGCAGAACCGGTACTAAG 59.799 52.381 8.00 0.00 0.00 2.18
2707 9982 1.734707 CGTGCAGAACCGGTACTAAGG 60.735 57.143 8.00 0.00 0.00 2.69
2708 9983 0.899720 TGCAGAACCGGTACTAAGGG 59.100 55.000 8.00 0.00 0.00 3.95
2709 9984 0.177373 GCAGAACCGGTACTAAGGGG 59.823 60.000 8.00 0.00 0.00 4.79
2710 9985 0.828677 CAGAACCGGTACTAAGGGGG 59.171 60.000 8.00 0.00 0.00 5.40
2711 9986 0.712380 AGAACCGGTACTAAGGGGGA 59.288 55.000 8.00 0.00 0.00 4.81
2712 9987 1.079323 AGAACCGGTACTAAGGGGGAA 59.921 52.381 8.00 0.00 0.00 3.97
2713 9988 1.208052 GAACCGGTACTAAGGGGGAAC 59.792 57.143 8.00 0.00 0.00 3.62
2715 9990 1.203351 ACCGGTACTAAGGGGGAACTT 60.203 52.381 4.49 0.00 34.52 2.66
2717 9992 3.106827 CCGGTACTAAGGGGGAACTTTA 58.893 50.000 0.00 0.00 32.02 1.85
2718 9993 3.519107 CCGGTACTAAGGGGGAACTTTAA 59.481 47.826 0.00 0.00 32.02 1.52
2719 9994 4.164796 CCGGTACTAAGGGGGAACTTTAAT 59.835 45.833 0.00 0.00 32.02 1.40
2730 10005 3.786553 GGAACTTTAATCCCCACCCTTT 58.213 45.455 0.00 0.00 0.00 3.11
2731 10006 4.938028 GGAACTTTAATCCCCACCCTTTA 58.062 43.478 0.00 0.00 0.00 1.85
2739 10015 7.827603 TTAATCCCCACCCTTTAGTACTAAA 57.172 36.000 23.31 23.31 34.28 1.85
2769 10048 3.308188 CCTTTAGTCCCCACCCTTTAGTG 60.308 52.174 0.00 0.00 37.51 2.74
2771 10050 1.001269 GTCCCCACCCTTTAGTGCC 60.001 63.158 0.00 0.00 36.38 5.01
2772 10051 2.045340 CCCCACCCTTTAGTGCCG 60.045 66.667 0.00 0.00 36.38 5.69
2773 10052 2.045340 CCCACCCTTTAGTGCCGG 60.045 66.667 0.00 0.00 36.38 6.13
2774 10053 2.754375 CCACCCTTTAGTGCCGGT 59.246 61.111 1.90 0.00 36.38 5.28
2775 10054 1.074248 CCACCCTTTAGTGCCGGTT 59.926 57.895 1.90 0.00 36.38 4.44
2776 10055 0.325602 CCACCCTTTAGTGCCGGTTA 59.674 55.000 1.90 0.00 36.38 2.85
2777 10056 1.445871 CACCCTTTAGTGCCGGTTAC 58.554 55.000 1.90 2.66 0.00 2.50
2778 10057 1.058284 ACCCTTTAGTGCCGGTTACA 58.942 50.000 1.90 0.00 0.00 2.41
2779 10058 1.002773 ACCCTTTAGTGCCGGTTACAG 59.997 52.381 1.90 0.00 0.00 2.74
2780 10059 1.276989 CCCTTTAGTGCCGGTTACAGA 59.723 52.381 1.90 0.00 0.00 3.41
2791 10070 2.460757 GGTTACAGAACCGGCACTAA 57.539 50.000 0.00 0.00 45.73 2.24
2792 10071 2.769893 GGTTACAGAACCGGCACTAAA 58.230 47.619 0.00 0.00 45.73 1.85
2793 10072 2.740447 GGTTACAGAACCGGCACTAAAG 59.260 50.000 0.00 0.00 45.73 1.85
2794 10073 2.740447 GTTACAGAACCGGCACTAAAGG 59.260 50.000 0.00 0.00 0.00 3.11
2796 10075 1.002502 AGAACCGGCACTAAAGGGC 60.003 57.895 0.00 0.00 0.00 5.19
2797 10076 2.035155 AACCGGCACTAAAGGGCC 59.965 61.111 13.51 13.51 46.80 5.80
2802 10081 2.776659 GGCACTAAAGGGCCTTACG 58.223 57.895 21.25 15.66 46.74 3.18
2803 10082 0.251073 GGCACTAAAGGGCCTTACGA 59.749 55.000 21.25 7.25 46.74 3.43
2804 10083 1.339342 GGCACTAAAGGGCCTTACGAA 60.339 52.381 21.25 4.81 46.74 3.85
2805 10084 1.736126 GCACTAAAGGGCCTTACGAAC 59.264 52.381 21.25 5.99 0.00 3.95
2807 10086 1.980036 ACTAAAGGGCCTTACGAACCA 59.020 47.619 21.25 0.00 0.00 3.67
2808 10087 2.027469 ACTAAAGGGCCTTACGAACCAG 60.027 50.000 21.25 10.26 0.00 4.00
2809 10088 0.769247 AAAGGGCCTTACGAACCAGT 59.231 50.000 21.25 0.00 0.00 4.00
2810 10089 0.036306 AAGGGCCTTACGAACCAGTG 59.964 55.000 19.37 0.00 0.00 3.66
2811 10090 2.038837 GGGCCTTACGAACCAGTGC 61.039 63.158 0.84 0.00 0.00 4.40
2812 10091 1.003718 GGCCTTACGAACCAGTGCT 60.004 57.895 0.00 0.00 0.00 4.40
2813 10092 0.248289 GGCCTTACGAACCAGTGCTA 59.752 55.000 0.00 0.00 0.00 3.49
2814 10093 1.134491 GGCCTTACGAACCAGTGCTAT 60.134 52.381 0.00 0.00 0.00 2.97
2815 10094 2.101917 GGCCTTACGAACCAGTGCTATA 59.898 50.000 0.00 0.00 0.00 1.31
2816 10095 3.381949 GCCTTACGAACCAGTGCTATAG 58.618 50.000 0.00 0.00 0.00 1.31
2817 10096 3.381949 CCTTACGAACCAGTGCTATAGC 58.618 50.000 18.18 18.18 42.50 2.97
2818 10097 3.381949 CTTACGAACCAGTGCTATAGCC 58.618 50.000 21.84 12.91 41.18 3.93
2819 10098 1.486211 ACGAACCAGTGCTATAGCCT 58.514 50.000 21.84 14.90 41.18 4.58
2820 10099 1.137086 ACGAACCAGTGCTATAGCCTG 59.863 52.381 24.89 24.89 41.18 4.85
2824 10103 2.246719 CCAGTGCTATAGCCTGGTTC 57.753 55.000 33.00 16.09 45.81 3.62
2827 10106 1.139853 AGTGCTATAGCCTGGTTCTGC 59.860 52.381 21.84 0.00 41.18 4.26
2828 10107 1.134401 GTGCTATAGCCTGGTTCTGCA 60.134 52.381 21.84 0.00 41.18 4.41
2829 10108 1.134401 TGCTATAGCCTGGTTCTGCAC 60.134 52.381 21.84 0.00 41.18 4.57
2830 10109 1.139853 GCTATAGCCTGGTTCTGCACT 59.860 52.381 14.13 0.00 34.31 4.40
2831 10110 2.365617 GCTATAGCCTGGTTCTGCACTA 59.634 50.000 14.13 0.00 34.31 2.74
2834 10113 0.322975 AGCCTGGTTCTGCACTAGTG 59.677 55.000 18.93 18.93 31.92 2.74
2835 10114 0.321671 GCCTGGTTCTGCACTAGTGA 59.678 55.000 27.08 10.55 31.92 3.41
2836 10115 1.065854 GCCTGGTTCTGCACTAGTGAT 60.066 52.381 27.08 0.00 31.92 3.06
2837 10116 2.625737 CCTGGTTCTGCACTAGTGATG 58.374 52.381 27.08 16.72 31.92 3.07
2838 10117 2.625737 CTGGTTCTGCACTAGTGATGG 58.374 52.381 27.08 14.24 0.00 3.51
2839 10118 1.278985 TGGTTCTGCACTAGTGATGGG 59.721 52.381 27.08 11.89 0.00 4.00
2840 10119 1.279271 GGTTCTGCACTAGTGATGGGT 59.721 52.381 27.08 0.00 0.00 4.51
2841 10120 2.622436 GTTCTGCACTAGTGATGGGTC 58.378 52.381 27.08 7.97 0.00 4.46
2842 10121 1.195115 TCTGCACTAGTGATGGGTCC 58.805 55.000 27.08 7.23 0.00 4.46
2843 10122 0.179000 CTGCACTAGTGATGGGTCCC 59.821 60.000 27.08 0.00 0.00 4.46
2844 10123 1.271840 TGCACTAGTGATGGGTCCCC 61.272 60.000 27.08 5.76 0.00 4.81
2855 10134 2.785357 TGGGTCCCCACTCAAAATTT 57.215 45.000 5.13 0.00 41.89 1.82
2856 10135 3.905493 TGGGTCCCCACTCAAAATTTA 57.095 42.857 5.13 0.00 41.89 1.40
2857 10136 3.502356 TGGGTCCCCACTCAAAATTTAC 58.498 45.455 5.13 0.00 41.89 2.01
2858 10137 3.117093 TGGGTCCCCACTCAAAATTTACA 60.117 43.478 5.13 0.00 41.89 2.41
2859 10138 3.898741 GGGTCCCCACTCAAAATTTACAA 59.101 43.478 0.00 0.00 35.81 2.41
2860 10139 4.530553 GGGTCCCCACTCAAAATTTACAAT 59.469 41.667 0.00 0.00 35.81 2.71
2861 10140 5.012664 GGGTCCCCACTCAAAATTTACAATT 59.987 40.000 0.00 0.00 35.81 2.32
2862 10141 6.465178 GGGTCCCCACTCAAAATTTACAATTT 60.465 38.462 0.00 0.00 35.81 1.82
2863 10142 7.256368 GGGTCCCCACTCAAAATTTACAATTTA 60.256 37.037 0.00 0.00 35.81 1.40
2864 10143 8.151596 GGTCCCCACTCAAAATTTACAATTTAA 58.848 33.333 0.00 0.00 0.00 1.52
2865 10144 8.984764 GTCCCCACTCAAAATTTACAATTTAAC 58.015 33.333 0.00 0.00 0.00 2.01
2866 10145 8.705594 TCCCCACTCAAAATTTACAATTTAACA 58.294 29.630 0.00 0.00 0.00 2.41
2867 10146 9.331282 CCCCACTCAAAATTTACAATTTAACAA 57.669 29.630 0.00 0.00 0.00 2.83
2992 10288 5.399858 AGCATACAATCGGACATCGTATAC 58.600 41.667 0.00 0.00 40.32 1.47
3087 10394 9.185192 GCATCATAATTCATTAACCAAGCTTAC 57.815 33.333 0.00 0.00 0.00 2.34
3094 10401 9.590451 AATTCATTAACCAAGCTTACATCAATG 57.410 29.630 0.00 6.18 0.00 2.82
3096 10403 6.889177 TCATTAACCAAGCTTACATCAATGGA 59.111 34.615 0.00 0.00 0.00 3.41
3097 10404 7.560991 TCATTAACCAAGCTTACATCAATGGAT 59.439 33.333 0.00 0.00 0.00 3.41
3103 10410 9.236006 ACCAAGCTTACATCAATGGATTATATC 57.764 33.333 0.00 0.00 0.00 1.63
3137 10475 6.994496 CCAAGAAGGTAGAATATTGCAGATGA 59.006 38.462 0.00 0.00 0.00 2.92
3149 10487 7.876936 ATATTGCAGATGAATGACTTTGTCT 57.123 32.000 0.00 0.00 33.15 3.41
3153 10491 5.412594 TGCAGATGAATGACTTTGTCTAACC 59.587 40.000 0.00 0.00 33.15 2.85
3154 10492 5.163713 GCAGATGAATGACTTTGTCTAACCC 60.164 44.000 0.00 0.00 33.15 4.11
3155 10493 5.939883 CAGATGAATGACTTTGTCTAACCCA 59.060 40.000 0.00 0.00 33.15 4.51
3157 10495 4.394729 TGAATGACTTTGTCTAACCCACC 58.605 43.478 0.00 0.00 33.15 4.61
3161 10499 1.156736 CTTTGTCTAACCCACCTGCG 58.843 55.000 0.00 0.00 0.00 5.18
3171 10509 2.583441 CCACCTGCGTCCTTCCTCA 61.583 63.158 0.00 0.00 0.00 3.86
3172 10510 1.371183 CACCTGCGTCCTTCCTCAA 59.629 57.895 0.00 0.00 0.00 3.02
3180 10518 0.877743 GTCCTTCCTCAAGTTGCAGC 59.122 55.000 0.00 0.00 0.00 5.25
3188 10526 1.154150 CAAGTTGCAGCGGCTTAGC 60.154 57.895 10.92 1.90 41.91 3.09
3190 10528 3.118454 GTTGCAGCGGCTTAGCGA 61.118 61.111 10.92 0.00 43.00 4.93
3211 10553 7.884668 AGCGACGCTAAATAAATTCAAATTTG 58.115 30.769 23.15 12.15 36.82 2.32
3212 10554 7.009174 AGCGACGCTAAATAAATTCAAATTTGG 59.991 33.333 23.15 0.12 36.82 3.28
3220 10562 7.481275 AATAAATTCAAATTTGGCGCTATGG 57.519 32.000 17.90 0.00 38.90 2.74
3224 10566 2.023673 CAAATTTGGCGCTATGGAGGA 58.976 47.619 7.64 0.00 0.00 3.71
3230 10572 3.569194 TGGCGCTATGGAGGAAATTAA 57.431 42.857 7.64 0.00 0.00 1.40
3266 10608 7.691050 AGCGTTACATTATTTTCTTTAGCGTTC 59.309 33.333 0.00 0.00 0.00 3.95
3339 10692 2.210116 CACAACTACACCACACTGTCC 58.790 52.381 0.00 0.00 0.00 4.02
3340 10693 1.202486 ACAACTACACCACACTGTCCG 60.202 52.381 0.00 0.00 0.00 4.79
3341 10694 1.117150 AACTACACCACACTGTCCGT 58.883 50.000 0.00 0.00 0.00 4.69
3342 10695 0.672342 ACTACACCACACTGTCCGTC 59.328 55.000 0.00 0.00 0.00 4.79
3343 10696 0.671796 CTACACCACACTGTCCGTCA 59.328 55.000 0.00 0.00 0.00 4.35
3344 10697 1.067974 CTACACCACACTGTCCGTCAA 59.932 52.381 0.00 0.00 0.00 3.18
3345 10698 0.250793 ACACCACACTGTCCGTCAAA 59.749 50.000 0.00 0.00 0.00 2.69
3346 10699 1.339247 ACACCACACTGTCCGTCAAAA 60.339 47.619 0.00 0.00 0.00 2.44
3347 10700 1.330521 CACCACACTGTCCGTCAAAAG 59.669 52.381 0.00 0.00 0.00 2.27
3375 10728 4.775058 AAAAACTACACAACAGTGCACA 57.225 36.364 21.04 0.00 36.74 4.57
3376 10729 3.757745 AAACTACACAACAGTGCACAC 57.242 42.857 21.04 0.00 36.74 3.82
3377 10730 2.691409 ACTACACAACAGTGCACACT 57.309 45.000 21.04 0.00 43.61 3.55
3378 10731 2.985896 ACTACACAACAGTGCACACTT 58.014 42.857 21.04 6.40 40.20 3.16
3379 10732 3.343617 ACTACACAACAGTGCACACTTT 58.656 40.909 21.04 5.67 40.20 2.66
3399 10752 6.872547 CACTTTTCTTAGTCCCTTGGTACTAC 59.127 42.308 0.00 0.00 0.00 2.73
3400 10753 6.786461 ACTTTTCTTAGTCCCTTGGTACTACT 59.214 38.462 0.00 0.00 0.00 2.57
3401 10754 6.600882 TTTCTTAGTCCCTTGGTACTACTG 57.399 41.667 0.00 0.00 0.00 2.74
3402 10755 4.021916 TCTTAGTCCCTTGGTACTACTGC 58.978 47.826 0.00 0.00 0.00 4.40
3515 11424 5.845391 CCTTTTCAAGGGTCAAACACTAA 57.155 39.130 0.00 0.00 45.27 2.24
3554 11500 3.664769 TGGATCCAGCCATCCAGG 58.335 61.111 11.44 0.00 46.34 4.45
3685 12355 4.890088 TGACGCTGTCTATGGTTAAACTT 58.110 39.130 9.49 0.00 33.15 2.66
3690 12360 5.048991 CGCTGTCTATGGTTAAACTTGGTTT 60.049 40.000 0.00 1.37 39.24 3.27
3710 12380 8.698973 TGGTTTCACCTTGTATTGAGAATTTA 57.301 30.769 0.00 0.00 39.58 1.40
3727 12397 7.033530 AGAATTTATGACCTCTCGACTGTAG 57.966 40.000 0.00 0.00 0.00 2.74
3741 12411 6.150641 TCTCGACTGTAGCACTATAACTTTGT 59.849 38.462 0.00 0.00 0.00 2.83
3818 12495 6.621613 TCTGTATCATATGAACAGATACGCC 58.378 40.000 28.18 5.23 43.45 5.68
4115 12849 3.274586 CATCCACGGCATCCTGCG 61.275 66.667 0.00 0.00 46.21 5.18
4173 12907 1.813513 CTGGACCACCTGATCAACAC 58.186 55.000 0.00 0.00 37.31 3.32
4198 12932 3.585020 CACAACGGCAGCAGCACA 61.585 61.111 2.65 0.00 44.61 4.57
4331 13071 2.707849 TACGAGCTCAACGGCCTCC 61.708 63.158 15.40 0.00 34.93 4.30
4346 13086 1.745489 CTCCCTAACCCTGCGTTGC 60.745 63.158 0.00 0.00 35.79 4.17
4541 13282 1.374631 GCTGTCGGATGCTGACACA 60.375 57.895 5.04 0.00 43.73 3.72
4562 13306 0.777446 TCCTAGCCCAAACTTTGCCT 59.223 50.000 0.00 0.00 0.00 4.75
4654 13416 6.918022 CCTGAACTAAAACCACAACAAGAATC 59.082 38.462 0.00 0.00 0.00 2.52
4710 13472 8.332464 CACAGAGTCAATACGTCTAAACAAAAA 58.668 33.333 0.00 0.00 0.00 1.94
4727 13489 6.619801 ACAAAAAGTGTCATACAGTTCCTC 57.380 37.500 0.86 0.00 40.60 3.71
4813 13577 0.951558 ACCACAATTGTGCGGAAGTC 59.048 50.000 29.42 0.00 44.34 3.01
4826 13590 1.405526 CGGAAGTCATCGAACACCCAT 60.406 52.381 0.00 0.00 0.00 4.00
4828 13592 2.354704 GGAAGTCATCGAACACCCATCA 60.355 50.000 0.00 0.00 0.00 3.07
4842 13606 4.515944 ACACCCATCAAAATGCATGTTTTG 59.484 37.500 16.12 16.12 45.76 2.44
4874 13642 7.523293 TTCCTAAAGCATTGATGACTTTGAA 57.477 32.000 16.50 12.07 36.01 2.69
4884 13652 4.619973 TGATGACTTTGAACCAATTGTGC 58.380 39.130 4.43 0.00 0.00 4.57
4929 13699 9.036980 TCATAAATAACCTAAGATAGAGGAGGC 57.963 37.037 0.00 0.00 37.53 4.70
4930 13700 6.689663 AAATAACCTAAGATAGAGGAGGCC 57.310 41.667 0.00 0.00 37.53 5.19
4931 13701 2.706112 ACCTAAGATAGAGGAGGCCC 57.294 55.000 0.00 0.00 37.53 5.80
4933 13703 3.346969 ACCTAAGATAGAGGAGGCCCTA 58.653 50.000 0.00 0.00 44.53 3.53
4934 13704 3.933221 ACCTAAGATAGAGGAGGCCCTAT 59.067 47.826 0.00 0.00 44.53 2.57
4935 13705 4.016944 ACCTAAGATAGAGGAGGCCCTATC 60.017 50.000 15.34 15.34 44.53 2.08
4936 13706 3.483255 AAGATAGAGGAGGCCCTATCC 57.517 52.381 18.08 11.36 44.53 2.59
4937 13707 2.373174 AGATAGAGGAGGCCCTATCCA 58.627 52.381 18.08 0.00 44.53 3.41
4938 13708 2.730254 AGATAGAGGAGGCCCTATCCAA 59.270 50.000 18.08 3.34 44.53 3.53
4939 13709 3.144894 AGATAGAGGAGGCCCTATCCAAA 59.855 47.826 18.08 3.05 44.53 3.28
4940 13710 1.813102 AGAGGAGGCCCTATCCAAAG 58.187 55.000 11.86 0.00 44.53 2.77
4941 13711 0.767998 GAGGAGGCCCTATCCAAAGG 59.232 60.000 11.86 0.00 44.53 3.11
4942 13712 1.151679 GGAGGCCCTATCCAAAGGC 59.848 63.158 0.00 0.00 46.37 4.35
4950 13720 5.644977 GCCCTATCCAAAGGCAATATTAC 57.355 43.478 0.00 0.00 46.34 1.89
4951 13721 5.076873 GCCCTATCCAAAGGCAATATTACA 58.923 41.667 0.00 0.00 46.34 2.41
4952 13722 5.716703 GCCCTATCCAAAGGCAATATTACAT 59.283 40.000 0.00 0.00 46.34 2.29
5022 13821 7.199765 AGGCCCTATATATCCAAAGACTACAT 58.800 38.462 0.00 0.00 0.00 2.29
5030 13829 9.706691 ATATATCCAAAGACTACATAAACACCG 57.293 33.333 0.00 0.00 0.00 4.94
5134 13935 2.892334 GAACTTTCGCACCGCTGCA 61.892 57.895 3.22 0.00 44.50 4.41
5154 13955 3.799574 GCATCATCAACTTTGTTGCACCA 60.800 43.478 5.65 0.00 0.00 4.17
5220 14024 2.299993 TAGCTTTGTGGCATCTCTCG 57.700 50.000 0.00 0.00 34.17 4.04
5663 14469 4.151512 AGTTTGTTTTGGTTCTTTGTTGCG 59.848 37.500 0.00 0.00 0.00 4.85
5668 14474 3.791973 TTGGTTCTTTGTTGCGTGATT 57.208 38.095 0.00 0.00 0.00 2.57
5675 14481 6.304683 GGTTCTTTGTTGCGTGATTTGTATAC 59.695 38.462 0.00 0.00 0.00 1.47
5683 14489 4.026393 TGCGTGATTTGTATACGTACATGC 60.026 41.667 19.58 19.58 40.35 4.06
5689 14495 6.918022 TGATTTGTATACGTACATGCTCTCTG 59.082 38.462 0.00 0.00 40.35 3.35
5719 14525 0.944386 CTTGCACTAGCCACGTTTGT 59.056 50.000 0.00 0.00 41.13 2.83
5720 14526 2.139917 CTTGCACTAGCCACGTTTGTA 58.860 47.619 0.00 0.00 41.13 2.41
5721 14527 2.465860 TGCACTAGCCACGTTTGTAT 57.534 45.000 0.00 0.00 41.13 2.29
5722 14528 2.073056 TGCACTAGCCACGTTTGTATG 58.927 47.619 0.00 0.00 41.13 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 21 3.305398 AGTCGACACAGGAGAACAATC 57.695 47.619 19.50 0.00 0.00 2.67
112 126 3.247173 GCATATCTGTCTCCTGCTTTTCG 59.753 47.826 0.00 0.00 0.00 3.46
312 721 0.896226 GTTCGAGGGTAGGAGCAGTT 59.104 55.000 0.00 0.00 0.00 3.16
323 736 0.875059 GCTCAGTTTTGGTTCGAGGG 59.125 55.000 0.00 0.00 0.00 4.30
328 741 3.096489 TGCATTGCTCAGTTTTGGTTC 57.904 42.857 10.49 0.00 0.00 3.62
553 1041 1.001293 TCGATCAGCAAGACAGCAACT 59.999 47.619 0.00 0.00 36.85 3.16
756 1322 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
757 1323 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
758 1324 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
759 1325 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
760 1326 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
761 1327 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
762 1328 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
763 1329 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
764 1330 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
765 1331 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
766 1332 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
767 1333 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
768 1334 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
769 1335 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
770 1336 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
771 1337 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
772 1338 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
773 1339 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
774 1340 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
775 1341 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
776 1342 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
777 1343 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
778 1344 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
779 1345 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
780 1346 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
781 1347 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
782 1348 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
783 1349 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
784 1350 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
785 1351 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
786 1352 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
787 1353 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
788 1354 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
789 1355 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
790 1356 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
791 1357 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
792 1358 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
793 1359 3.309296 GGGAGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
794 1360 2.370189 GGGGAGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
795 1361 2.408565 GGGGAGAGAGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
796 1362 1.421646 GGGGGAGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
797 1363 1.010793 AGGGGGAGAGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
798 1364 1.421646 GAGGGGGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
799 1365 1.010793 AGAGGGGGAGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
800 1366 1.421646 GAGAGGGGGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
801 1367 1.010793 AGAGAGGGGGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
802 1368 1.421646 GAGAGAGGGGGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
803 1369 1.010793 AGAGAGAGGGGGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
804 1370 1.421646 GAGAGAGAGGGGGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
805 1371 1.518367 GAGAGAGAGGGGGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
806 1372 0.478507 GGAGAGAGAGGGGGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
807 1373 0.996762 GGGAGAGAGAGGGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
808 1374 0.998945 AGGGAGAGAGAGGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
809 1375 0.996762 GAGGGAGAGAGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
810 1376 0.998945 AGAGGGAGAGAGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
811 1377 0.996762 GAGAGGGAGAGAGAGGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
812 1378 0.998945 AGAGAGGGAGAGAGAGGGGG 60.999 65.000 0.00 0.00 0.00 5.40
813 1379 0.478507 GAGAGAGGGAGAGAGAGGGG 59.521 65.000 0.00 0.00 0.00 4.79
814 1380 1.421646 GAGAGAGAGGGAGAGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
815 1381 2.370189 GAGAGAGAGAGGGAGAGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
816 1382 3.312890 AGAGAGAGAGAGGGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
817 1383 3.051803 AGAGAGAGAGAGAGGGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
818 1384 3.312890 AGAGAGAGAGAGAGGGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
819 1385 3.051803 AGAGAGAGAGAGAGAGGGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
820 1386 3.312890 AGAGAGAGAGAGAGAGGGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
821 1387 3.309296 GAGAGAGAGAGAGAGAGGGAGA 58.691 54.545 0.00 0.00 0.00 3.71
822 1388 2.370189 GGAGAGAGAGAGAGAGAGGGAG 59.630 59.091 0.00 0.00 0.00 4.30
823 1389 2.022035 AGGAGAGAGAGAGAGAGAGGGA 60.022 54.545 0.00 0.00 0.00 4.20
824 1390 2.412591 AGGAGAGAGAGAGAGAGAGGG 58.587 57.143 0.00 0.00 0.00 4.30
825 1391 3.813443 CAAGGAGAGAGAGAGAGAGAGG 58.187 54.545 0.00 0.00 0.00 3.69
826 1392 3.209410 GCAAGGAGAGAGAGAGAGAGAG 58.791 54.545 0.00 0.00 0.00 3.20
827 1393 2.092429 GGCAAGGAGAGAGAGAGAGAGA 60.092 54.545 0.00 0.00 0.00 3.10
1163 1978 2.462456 ATCTCACACACACAGCGATT 57.538 45.000 0.00 0.00 0.00 3.34
1399 2268 2.516227 TGTGGAGGGAGAGAGTGTAG 57.484 55.000 0.00 0.00 0.00 2.74
1402 2273 1.406614 GCATTGTGGAGGGAGAGAGTG 60.407 57.143 0.00 0.00 0.00 3.51
1429 2363 3.916359 TGGCCGATTAGTTCACCATAA 57.084 42.857 0.00 0.00 0.00 1.90
1525 2482 0.036671 CGTGGGGTACTTCTTGTCCC 60.037 60.000 0.00 0.00 36.16 4.46
1824 8233 4.639310 ACAGTAGTATTGTACAGTCCGGAG 59.361 45.833 3.06 0.00 0.00 4.63
1828 8237 7.278868 ACGTACTACAGTAGTATTGTACAGTCC 59.721 40.741 21.07 5.86 42.68 3.85
1834 8243 5.810074 TGCGACGTACTACAGTAGTATTGTA 59.190 40.000 21.07 8.90 42.68 2.41
1837 8246 5.801350 TTGCGACGTACTACAGTAGTATT 57.199 39.130 21.07 12.63 42.68 1.89
1915 8506 2.534349 CAGTACGTACATTGATCGCACC 59.466 50.000 26.55 0.00 0.00 5.01
1982 8616 5.707242 ATCTTCACTAGACTTTGTCGTCA 57.293 39.130 0.00 0.00 37.67 4.35
2011 8655 1.609210 CATTCCCAACCACCACCCC 60.609 63.158 0.00 0.00 0.00 4.95
2071 9257 0.546747 AAATCCCAGTCCCCACTCGA 60.547 55.000 0.00 0.00 0.00 4.04
2162 9361 2.355197 CGGCACTGATGGTCACATTAA 58.645 47.619 0.00 0.00 37.47 1.40
2175 9374 3.353836 CCGTTGGAACCGGCACTG 61.354 66.667 0.00 0.00 38.85 3.66
2558 9799 2.195683 CACCTATTGGGCCGGCAT 59.804 61.111 30.85 16.27 39.10 4.40
2623 9897 3.438816 GGGGGAGAGGAGCTCTTTAGTAT 60.439 52.174 14.64 0.00 41.35 2.12
2668 9943 4.814294 ACCGCCGCTAAAGAGCCG 62.814 66.667 0.00 0.00 46.86 5.52
2709 9984 3.468071 AAGGGTGGGGATTAAAGTTCC 57.532 47.619 0.00 0.00 0.00 3.62
2710 9985 5.577100 ACTAAAGGGTGGGGATTAAAGTTC 58.423 41.667 0.00 0.00 0.00 3.01
2711 9986 5.610429 ACTAAAGGGTGGGGATTAAAGTT 57.390 39.130 0.00 0.00 0.00 2.66
2712 9987 5.794289 AGTACTAAAGGGTGGGGATTAAAGT 59.206 40.000 0.00 0.00 0.00 2.66
2713 9988 6.323210 AGTACTAAAGGGTGGGGATTAAAG 57.677 41.667 0.00 0.00 0.00 1.85
2715 9990 7.827603 TTTAGTACTAAAGGGTGGGGATTAA 57.172 36.000 21.52 0.00 31.95 1.40
2717 9992 6.323210 CTTTAGTACTAAAGGGTGGGGATT 57.677 41.667 33.83 0.00 44.96 3.01
2718 9993 5.970501 CTTTAGTACTAAAGGGTGGGGAT 57.029 43.478 33.83 0.00 44.96 3.85
2773 10052 2.740447 CCTTTAGTGCCGGTTCTGTAAC 59.260 50.000 1.90 0.00 34.66 2.50
2774 10053 2.289819 CCCTTTAGTGCCGGTTCTGTAA 60.290 50.000 1.90 1.06 0.00 2.41
2775 10054 1.276989 CCCTTTAGTGCCGGTTCTGTA 59.723 52.381 1.90 0.00 0.00 2.74
2776 10055 0.036306 CCCTTTAGTGCCGGTTCTGT 59.964 55.000 1.90 0.00 0.00 3.41
2777 10056 1.305930 GCCCTTTAGTGCCGGTTCTG 61.306 60.000 1.90 0.00 0.00 3.02
2778 10057 1.002502 GCCCTTTAGTGCCGGTTCT 60.003 57.895 1.90 4.41 0.00 3.01
2779 10058 2.044555 GGCCCTTTAGTGCCGGTTC 61.045 63.158 1.90 0.00 38.00 3.62
2780 10059 2.035155 GGCCCTTTAGTGCCGGTT 59.965 61.111 1.90 0.00 38.00 4.44
2785 10064 1.736126 GTTCGTAAGGCCCTTTAGTGC 59.264 52.381 0.00 0.00 38.47 4.40
2789 10068 1.980036 ACTGGTTCGTAAGGCCCTTTA 59.020 47.619 0.00 0.00 38.47 1.85
2790 10069 0.769247 ACTGGTTCGTAAGGCCCTTT 59.231 50.000 0.00 0.00 38.47 3.11
2791 10070 0.036306 CACTGGTTCGTAAGGCCCTT 59.964 55.000 0.00 0.00 38.47 3.95
2792 10071 1.677552 CACTGGTTCGTAAGGCCCT 59.322 57.895 0.00 0.00 38.47 5.19
2793 10072 2.038837 GCACTGGTTCGTAAGGCCC 61.039 63.158 0.00 0.00 38.47 5.80
2794 10073 0.248289 TAGCACTGGTTCGTAAGGCC 59.752 55.000 0.00 0.00 38.47 5.19
2796 10075 3.381949 GCTATAGCACTGGTTCGTAAGG 58.618 50.000 20.01 0.00 41.59 2.69
2797 10076 3.068307 AGGCTATAGCACTGGTTCGTAAG 59.932 47.826 25.53 0.00 44.36 2.34
2798 10077 3.028850 AGGCTATAGCACTGGTTCGTAA 58.971 45.455 25.53 0.00 44.36 3.18
2802 10081 2.246719 CCAGGCTATAGCACTGGTTC 57.753 55.000 33.00 16.35 45.81 3.62
2807 10086 1.139853 GCAGAACCAGGCTATAGCACT 59.860 52.381 25.53 16.76 44.36 4.40
2808 10087 1.134401 TGCAGAACCAGGCTATAGCAC 60.134 52.381 25.53 14.85 44.36 4.40
2809 10088 1.134401 GTGCAGAACCAGGCTATAGCA 60.134 52.381 25.53 0.00 44.36 3.49
2810 10089 1.139853 AGTGCAGAACCAGGCTATAGC 59.860 52.381 16.78 16.78 41.14 2.97
2811 10090 3.639094 ACTAGTGCAGAACCAGGCTATAG 59.361 47.826 0.00 0.00 0.00 1.31
2812 10091 3.384789 CACTAGTGCAGAACCAGGCTATA 59.615 47.826 10.54 0.00 0.00 1.31
2813 10092 2.169352 CACTAGTGCAGAACCAGGCTAT 59.831 50.000 10.54 0.00 0.00 2.97
2814 10093 1.550524 CACTAGTGCAGAACCAGGCTA 59.449 52.381 10.54 0.00 0.00 3.93
2815 10094 0.322975 CACTAGTGCAGAACCAGGCT 59.677 55.000 10.54 0.00 0.00 4.58
2816 10095 0.321671 TCACTAGTGCAGAACCAGGC 59.678 55.000 18.45 0.00 0.00 4.85
2817 10096 2.625737 CATCACTAGTGCAGAACCAGG 58.374 52.381 18.45 0.00 0.00 4.45
2818 10097 2.625737 CCATCACTAGTGCAGAACCAG 58.374 52.381 18.45 1.63 0.00 4.00
2819 10098 1.278985 CCCATCACTAGTGCAGAACCA 59.721 52.381 18.45 0.00 0.00 3.67
2820 10099 1.279271 ACCCATCACTAGTGCAGAACC 59.721 52.381 18.45 0.00 0.00 3.62
2822 10101 1.555075 GGACCCATCACTAGTGCAGAA 59.445 52.381 18.45 0.79 0.00 3.02
2823 10102 1.195115 GGACCCATCACTAGTGCAGA 58.805 55.000 18.45 1.19 0.00 4.26
2824 10103 0.179000 GGGACCCATCACTAGTGCAG 59.821 60.000 18.45 12.09 0.00 4.41
2839 10118 8.984764 GTTAAATTGTAAATTTTGAGTGGGGAC 58.015 33.333 0.00 0.00 0.00 4.46
2840 10119 8.705594 TGTTAAATTGTAAATTTTGAGTGGGGA 58.294 29.630 0.00 0.00 0.00 4.81
2841 10120 8.894768 TGTTAAATTGTAAATTTTGAGTGGGG 57.105 30.769 0.00 0.00 0.00 4.96
2862 10141 9.629878 ACCCATCGTTAAATGGTATAATTGTTA 57.370 29.630 5.62 0.00 44.05 2.41
2863 10142 8.528044 ACCCATCGTTAAATGGTATAATTGTT 57.472 30.769 5.62 0.00 44.05 2.83
2864 10143 9.280174 CTACCCATCGTTAAATGGTATAATTGT 57.720 33.333 5.62 0.00 44.05 2.71
2865 10144 9.496873 TCTACCCATCGTTAAATGGTATAATTG 57.503 33.333 5.62 0.00 44.05 2.32
2867 10146 9.720769 CTTCTACCCATCGTTAAATGGTATAAT 57.279 33.333 5.62 0.00 44.05 1.28
3002 10298 7.012989 TGTGTATGAGCGTATGTCAAGTATACT 59.987 37.037 0.00 0.00 0.00 2.12
3112 10450 6.994496 TCATCTGCAATATTCTACCTTCTTGG 59.006 38.462 0.00 0.00 42.93 3.61
3131 10469 5.939883 TGGGTTAGACAAAGTCATTCATCTG 59.060 40.000 0.00 0.00 34.60 2.90
3137 10475 4.398319 CAGGTGGGTTAGACAAAGTCATT 58.602 43.478 0.00 0.00 34.60 2.57
3149 10487 1.675219 GAAGGACGCAGGTGGGTTA 59.325 57.895 0.75 0.00 41.50 2.85
3153 10491 2.111999 TTGAGGAAGGACGCAGGTGG 62.112 60.000 0.00 0.00 0.00 4.61
3154 10492 0.671781 CTTGAGGAAGGACGCAGGTG 60.672 60.000 0.00 0.00 0.00 4.00
3155 10493 1.122019 ACTTGAGGAAGGACGCAGGT 61.122 55.000 0.00 0.00 32.95 4.00
3157 10495 1.151668 CAACTTGAGGAAGGACGCAG 58.848 55.000 0.00 0.00 32.95 5.18
3161 10499 0.877743 GCTGCAACTTGAGGAAGGAC 59.122 55.000 0.00 0.00 32.95 3.85
3171 10509 2.680913 CGCTAAGCCGCTGCAACTT 61.681 57.895 2.05 8.87 41.13 2.66
3172 10510 3.121030 CGCTAAGCCGCTGCAACT 61.121 61.111 2.05 0.00 41.13 3.16
3188 10526 7.110511 GCCAAATTTGAATTTATTTAGCGTCG 58.889 34.615 19.86 0.00 36.52 5.12
3190 10528 6.454981 GCGCCAAATTTGAATTTATTTAGCGT 60.455 34.615 19.86 0.00 46.24 5.07
3211 10553 4.072131 TCATTAATTTCCTCCATAGCGCC 58.928 43.478 2.29 0.00 0.00 6.53
3212 10554 4.378874 GCTCATTAATTTCCTCCATAGCGC 60.379 45.833 0.00 0.00 0.00 5.92
3220 10562 7.659652 ACGCTAATAGCTCATTAATTTCCTC 57.340 36.000 10.80 0.00 39.60 3.71
3247 10589 9.464248 GCATTTTGAACGCTAAAGAAAATAATG 57.536 29.630 0.00 0.00 0.00 1.90
3248 10590 9.202273 TGCATTTTGAACGCTAAAGAAAATAAT 57.798 25.926 0.00 0.00 0.00 1.28
3266 10608 4.291540 TCCGCTAAAGCTATGCATTTTG 57.708 40.909 3.54 0.00 39.32 2.44
3288 10630 2.122768 AGTAGCTTATGCAGAGCCCTT 58.877 47.619 18.23 5.95 41.03 3.95
3361 10714 2.819608 AGAAAAGTGTGCACTGTTGTGT 59.180 40.909 19.41 2.11 45.44 3.72
3362 10715 3.492421 AGAAAAGTGTGCACTGTTGTG 57.508 42.857 19.41 0.00 38.90 3.33
3363 10716 4.700213 ACTAAGAAAAGTGTGCACTGTTGT 59.300 37.500 19.41 6.26 38.90 3.32
3364 10717 5.235305 ACTAAGAAAAGTGTGCACTGTTG 57.765 39.130 19.41 1.54 38.90 3.33
3365 10718 4.335594 GGACTAAGAAAAGTGTGCACTGTT 59.664 41.667 19.41 7.41 41.36 3.16
3366 10719 3.877508 GGACTAAGAAAAGTGTGCACTGT 59.122 43.478 19.41 1.55 41.58 3.55
3367 10720 3.251004 GGGACTAAGAAAAGTGTGCACTG 59.749 47.826 19.41 0.00 41.58 3.66
3368 10721 3.136626 AGGGACTAAGAAAAGTGTGCACT 59.863 43.478 19.41 0.00 39.92 4.40
3369 10722 3.477530 AGGGACTAAGAAAAGTGTGCAC 58.522 45.455 10.75 10.75 36.02 4.57
3370 10723 3.857157 AGGGACTAAGAAAAGTGTGCA 57.143 42.857 0.00 0.00 36.02 4.57
3371 10724 3.253432 CCAAGGGACTAAGAAAAGTGTGC 59.747 47.826 0.00 0.00 38.49 4.57
3372 10725 4.461198 ACCAAGGGACTAAGAAAAGTGTG 58.539 43.478 0.00 0.00 38.49 3.82
3373 10726 4.790718 ACCAAGGGACTAAGAAAAGTGT 57.209 40.909 0.00 0.00 38.49 3.55
3374 10727 5.866207 AGTACCAAGGGACTAAGAAAAGTG 58.134 41.667 1.05 0.00 38.49 3.16
3375 10728 6.786461 AGTAGTACCAAGGGACTAAGAAAAGT 59.214 38.462 12.70 0.00 38.49 2.66
3376 10729 7.097834 CAGTAGTACCAAGGGACTAAGAAAAG 58.902 42.308 12.70 0.00 38.49 2.27
3377 10730 6.519551 GCAGTAGTACCAAGGGACTAAGAAAA 60.520 42.308 12.70 0.00 38.49 2.29
3378 10731 5.046807 GCAGTAGTACCAAGGGACTAAGAAA 60.047 44.000 12.70 0.00 38.49 2.52
3379 10732 4.465305 GCAGTAGTACCAAGGGACTAAGAA 59.535 45.833 12.70 0.00 38.49 2.52
3399 10752 0.534412 ACCAGTAGCAGTAGCAGCAG 59.466 55.000 0.00 0.00 45.49 4.24
3400 10753 1.847328 TACCAGTAGCAGTAGCAGCA 58.153 50.000 0.00 0.00 45.49 4.41
3401 10754 2.101582 ACATACCAGTAGCAGTAGCAGC 59.898 50.000 0.00 0.00 45.49 5.25
3402 10755 3.243569 GGACATACCAGTAGCAGTAGCAG 60.244 52.174 0.00 0.00 40.18 4.24
3538 11484 0.776176 AATCCTGGATGGCTGGATCC 59.224 55.000 10.54 4.20 39.43 3.36
3543 11489 3.558746 GGATCTACAATCCTGGATGGCTG 60.559 52.174 10.54 7.62 35.36 4.85
3546 11492 4.622457 CGATGGATCTACAATCCTGGATGG 60.622 50.000 10.54 10.05 38.95 3.51
3547 11493 4.221482 TCGATGGATCTACAATCCTGGATG 59.779 45.833 10.54 7.22 38.95 3.51
3548 11494 4.221703 GTCGATGGATCTACAATCCTGGAT 59.778 45.833 2.57 2.57 38.95 3.41
3549 11495 3.574396 GTCGATGGATCTACAATCCTGGA 59.426 47.826 0.00 0.00 38.95 3.86
3550 11496 3.321968 TGTCGATGGATCTACAATCCTGG 59.678 47.826 5.71 0.00 38.95 4.45
3552 11498 4.562347 GCATGTCGATGGATCTACAATCCT 60.562 45.833 5.71 0.00 36.31 3.24
3553 11499 3.681897 GCATGTCGATGGATCTACAATCC 59.318 47.826 0.00 0.00 36.31 3.01
3554 11500 3.681897 GGCATGTCGATGGATCTACAATC 59.318 47.826 0.00 0.00 36.31 2.67
3690 12360 8.328758 AGGTCATAAATTCTCAATACAAGGTGA 58.671 33.333 0.00 0.00 0.00 4.02
3710 12380 1.746220 GTGCTACAGTCGAGAGGTCAT 59.254 52.381 0.00 0.00 0.00 3.06
3713 12383 2.783609 TAGTGCTACAGTCGAGAGGT 57.216 50.000 0.00 0.00 0.00 3.85
3777 12447 7.041721 TGATACAGATAGACAGCGTCAATTTT 58.958 34.615 10.52 0.00 34.60 1.82
3778 12448 6.573434 TGATACAGATAGACAGCGTCAATTT 58.427 36.000 10.52 0.00 34.60 1.82
4115 12849 2.270527 GGGCTTGGTCTCCTGCTC 59.729 66.667 0.00 0.00 0.00 4.26
4198 12932 4.021894 AGCTTCATGAACTTCTCGTACAGT 60.022 41.667 3.38 0.00 0.00 3.55
4331 13071 2.750237 GGGCAACGCAGGGTTAGG 60.750 66.667 1.91 0.00 36.49 2.69
4541 13282 1.547901 GGCAAAGTTTGGGCTAGGACT 60.548 52.381 17.11 0.00 0.00 3.85
4585 13338 8.331022 GTGCGATTGTATTAGCTTGATATATGG 58.669 37.037 0.00 0.00 0.00 2.74
4654 13416 4.999950 GCTATGTACTCCCTCCATTTCATG 59.000 45.833 0.00 0.00 0.00 3.07
4710 13472 4.974645 TTTGGAGGAACTGTATGACACT 57.025 40.909 0.00 0.00 41.55 3.55
4798 13562 1.731709 TCGATGACTTCCGCACAATTG 59.268 47.619 3.24 3.24 0.00 2.32
4807 13571 2.280628 GATGGGTGTTCGATGACTTCC 58.719 52.381 0.00 0.00 0.00 3.46
4813 13577 3.181397 GCATTTTGATGGGTGTTCGATG 58.819 45.455 0.00 0.00 0.00 3.84
4855 13623 5.534207 TGGTTCAAAGTCATCAATGCTTT 57.466 34.783 6.59 6.59 35.82 3.51
4928 13698 5.076873 TGTAATATTGCCTTTGGATAGGGC 58.923 41.667 0.00 0.00 45.45 5.19
4929 13699 6.721208 ACATGTAATATTGCCTTTGGATAGGG 59.279 38.462 0.00 0.00 35.74 3.53
4930 13700 7.448161 TGACATGTAATATTGCCTTTGGATAGG 59.552 37.037 0.00 0.00 38.40 2.57
4931 13701 8.394971 TGACATGTAATATTGCCTTTGGATAG 57.605 34.615 0.00 0.00 0.00 2.08
4932 13702 8.938801 ATGACATGTAATATTGCCTTTGGATA 57.061 30.769 0.00 0.00 0.00 2.59
4933 13703 7.844493 ATGACATGTAATATTGCCTTTGGAT 57.156 32.000 0.00 0.00 0.00 3.41
4934 13704 7.230510 GGTATGACATGTAATATTGCCTTTGGA 59.769 37.037 6.18 0.00 0.00 3.53
4935 13705 7.370383 GGTATGACATGTAATATTGCCTTTGG 58.630 38.462 6.18 0.00 0.00 3.28
4936 13706 7.041440 TCGGTATGACATGTAATATTGCCTTTG 60.041 37.037 6.18 0.00 0.00 2.77
4937 13707 6.995686 TCGGTATGACATGTAATATTGCCTTT 59.004 34.615 6.18 0.00 0.00 3.11
4938 13708 6.530120 TCGGTATGACATGTAATATTGCCTT 58.470 36.000 6.18 0.00 0.00 4.35
4939 13709 6.109156 TCGGTATGACATGTAATATTGCCT 57.891 37.500 6.18 0.00 0.00 4.75
4940 13710 6.795098 TTCGGTATGACATGTAATATTGCC 57.205 37.500 6.18 2.72 0.00 4.52
4941 13711 8.342634 ACTTTTCGGTATGACATGTAATATTGC 58.657 33.333 6.18 0.00 0.00 3.56
4946 13716 9.314321 CTTCTACTTTTCGGTATGACATGTAAT 57.686 33.333 0.00 0.00 0.00 1.89
4947 13717 8.308931 ACTTCTACTTTTCGGTATGACATGTAA 58.691 33.333 0.00 0.00 0.00 2.41
4948 13718 7.833786 ACTTCTACTTTTCGGTATGACATGTA 58.166 34.615 0.00 0.00 0.00 2.29
4949 13719 6.698380 ACTTCTACTTTTCGGTATGACATGT 58.302 36.000 0.00 0.00 0.00 3.21
4950 13720 8.188799 TCTACTTCTACTTTTCGGTATGACATG 58.811 37.037 0.00 0.00 0.00 3.21
4951 13721 8.289939 TCTACTTCTACTTTTCGGTATGACAT 57.710 34.615 0.00 0.00 0.00 3.06
4952 13722 7.692460 TCTACTTCTACTTTTCGGTATGACA 57.308 36.000 0.00 0.00 0.00 3.58
4992 13789 6.038609 TCTTTGGATATATAGGGCCTCCATT 58.961 40.000 10.74 0.00 35.99 3.16
5022 13821 4.693566 GTGTTCTCCAATCATCGGTGTTTA 59.306 41.667 0.00 0.00 0.00 2.01
5028 13827 2.555199 GAGGTGTTCTCCAATCATCGG 58.445 52.381 0.00 0.00 36.52 4.18
5066 13865 2.917600 GGGGTATATAAAGGGGTCAGGG 59.082 54.545 0.00 0.00 0.00 4.45
5093 13894 2.687425 CGCATATTCATGGTTGGGTTGA 59.313 45.455 0.00 0.00 32.36 3.18
5134 13935 4.669206 TTGGTGCAACAAAGTTGATGAT 57.331 36.364 16.46 0.00 39.98 2.45
5154 13955 0.748005 GCTACCCGCACATGGTCATT 60.748 55.000 0.00 0.00 37.31 2.57
5196 13997 1.753073 AGATGCCACAAAGCTATTGCC 59.247 47.619 8.09 0.63 40.80 4.52
5220 14024 4.989168 AGATATTTGTATCGAAGAACGGGC 59.011 41.667 0.00 0.00 43.58 6.13
5663 14469 6.918569 AGAGAGCATGTACGTATACAAATCAC 59.081 38.462 0.00 0.00 44.47 3.06
5668 14474 6.486993 AGATCAGAGAGCATGTACGTATACAA 59.513 38.462 0.00 0.00 44.47 2.41
5675 14481 7.119116 AGACTAATAGATCAGAGAGCATGTACG 59.881 40.741 0.00 0.00 0.00 3.67
5683 14489 7.275888 AGTGCAAGACTAATAGATCAGAGAG 57.724 40.000 0.00 0.00 30.86 3.20
5689 14495 5.923684 GTGGCTAGTGCAAGACTAATAGATC 59.076 44.000 0.00 0.00 41.91 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.