Multiple sequence alignment - TraesCS7D01G062300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G062300 chr7D 100.000 3801 0 0 1 3801 34012858 34009058 0.000000e+00 7020.0
1 TraesCS7D01G062300 chr7D 93.028 545 27 8 1077 1613 34077178 34076637 0.000000e+00 785.0
2 TraesCS7D01G062300 chr7D 84.268 820 100 12 1906 2714 34446645 34447446 0.000000e+00 773.0
3 TraesCS7D01G062300 chr7D 86.000 750 62 27 1079 1804 33754618 33755348 0.000000e+00 763.0
4 TraesCS7D01G062300 chr7D 83.209 804 105 16 1928 2717 34074589 34073802 0.000000e+00 710.0
5 TraesCS7D01G062300 chr7D 83.443 761 75 29 1077 1809 34444961 34445698 0.000000e+00 660.0
6 TraesCS7D01G062300 chr7D 94.872 195 10 0 1077 1271 34151709 34151515 4.770000e-79 305.0
7 TraesCS7D01G062300 chr7D 74.425 391 43 33 533 904 34077907 34077555 8.630000e-22 115.0
8 TraesCS7D01G062300 chr7D 97.059 34 0 1 705 737 34152173 34152140 5.300000e-04 56.5
9 TraesCS7D01G062300 chr7A 89.765 1192 69 21 2640 3800 34441641 34440472 0.000000e+00 1476.0
10 TraesCS7D01G062300 chr7A 94.438 827 24 5 1815 2641 34451160 34450356 0.000000e+00 1253.0
11 TraesCS7D01G062300 chr7A 84.544 757 62 34 1079 1803 34106560 34105827 0.000000e+00 699.0
12 TraesCS7D01G062300 chr7A 81.830 787 113 15 1928 2702 34518220 34517452 5.360000e-178 634.0
13 TraesCS7D01G062300 chr7A 93.000 400 28 0 1320 1719 34452238 34451839 5.470000e-163 584.0
14 TraesCS7D01G062300 chr7A 84.425 565 50 24 1 563 34459135 34458607 4.350000e-144 521.0
15 TraesCS7D01G062300 chr7A 91.667 360 28 1 923 1282 34452661 34452304 7.330000e-137 497.0
16 TraesCS7D01G062300 chr7A 94.949 297 14 1 1320 1615 34519355 34519059 7.440000e-127 464.0
17 TraesCS7D01G062300 chr7A 79.959 489 64 24 1953 2421 34104461 34103987 2.830000e-86 329.0
18 TraesCS7D01G062300 chr7A 97.436 39 1 0 1777 1815 34451831 34451793 2.450000e-07 67.6
19 TraesCS7D01G062300 chr4A 81.142 1384 178 38 1910 3278 691325142 691326457 0.000000e+00 1033.0
20 TraesCS7D01G062300 chr4A 85.996 914 85 21 923 1812 691323683 691324577 0.000000e+00 939.0
21 TraesCS7D01G062300 chr4A 85.795 880 90 24 951 1812 691246630 691247492 0.000000e+00 900.0
22 TraesCS7D01G062300 chr4A 82.635 1002 121 21 1837 2831 691248363 691249318 0.000000e+00 837.0
23 TraesCS7D01G062300 chr4A 83.269 783 104 11 1948 2717 690885093 690884325 0.000000e+00 695.0
24 TraesCS7D01G062300 chr4A 89.649 541 41 11 1079 1613 691470119 691469588 0.000000e+00 675.0
25 TraesCS7D01G062300 chr4A 81.325 830 109 21 1909 2717 690936860 690936056 1.930000e-177 632.0
26 TraesCS7D01G062300 chr4A 81.566 792 123 11 1927 2710 691152471 691153247 1.930000e-177 632.0
27 TraesCS7D01G062300 chr4A 87.544 562 43 15 1077 1613 690938252 690937693 3.220000e-175 625.0
28 TraesCS7D01G062300 chr4A 81.470 626 96 12 2103 2717 690879955 690879339 2.640000e-136 496.0
29 TraesCS7D01G062300 chr4A 81.681 595 84 14 1933 2517 690687685 690687106 4.440000e-129 472.0
30 TraesCS7D01G062300 chr4A 95.897 195 8 0 1077 1271 690886977 690886783 2.200000e-82 316.0
31 TraesCS7D01G062300 chr4A 80.161 373 38 13 351 707 691246083 691246435 2.930000e-61 246.0
32 TraesCS7D01G062300 chr4A 81.313 198 25 9 705 897 690881993 690881803 2.370000e-32 150.0
33 TraesCS7D01G062300 chr4A 93.548 62 2 1 1812 1871 691325067 691325128 1.450000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G062300 chr7D 34009058 34012858 3800 True 7020.000000 7020 100.000000 1 3801 1 chr7D.!!$R1 3800
1 TraesCS7D01G062300 chr7D 33754618 33755348 730 False 763.000000 763 86.000000 1079 1804 1 chr7D.!!$F1 725
2 TraesCS7D01G062300 chr7D 34444961 34447446 2485 False 716.500000 773 83.855500 1077 2714 2 chr7D.!!$F2 1637
3 TraesCS7D01G062300 chr7D 34073802 34077907 4105 True 536.666667 785 83.554000 533 2717 3 chr7D.!!$R2 2184
4 TraesCS7D01G062300 chr7A 34440472 34441641 1169 True 1476.000000 1476 89.765000 2640 3800 1 chr7A.!!$R1 1160
5 TraesCS7D01G062300 chr7A 34450356 34452661 2305 True 600.400000 1253 94.135250 923 2641 4 chr7A.!!$R4 1718
6 TraesCS7D01G062300 chr7A 34517452 34519355 1903 True 549.000000 634 88.389500 1320 2702 2 chr7A.!!$R5 1382
7 TraesCS7D01G062300 chr7A 34458607 34459135 528 True 521.000000 521 84.425000 1 563 1 chr7A.!!$R2 562
8 TraesCS7D01G062300 chr7A 34103987 34106560 2573 True 514.000000 699 82.251500 1079 2421 2 chr7A.!!$R3 1342
9 TraesCS7D01G062300 chr4A 691323683 691326457 2774 False 687.866667 1033 86.895333 923 3278 3 chr4A.!!$F3 2355
10 TraesCS7D01G062300 chr4A 691469588 691470119 531 True 675.000000 675 89.649000 1079 1613 1 chr4A.!!$R2 534
11 TraesCS7D01G062300 chr4A 691246083 691249318 3235 False 661.000000 900 82.863667 351 2831 3 chr4A.!!$F2 2480
12 TraesCS7D01G062300 chr4A 691152471 691153247 776 False 632.000000 632 81.566000 1927 2710 1 chr4A.!!$F1 783
13 TraesCS7D01G062300 chr4A 690936056 690938252 2196 True 628.500000 632 84.434500 1077 2717 2 chr4A.!!$R4 1640
14 TraesCS7D01G062300 chr4A 690687106 690687685 579 True 472.000000 472 81.681000 1933 2517 1 chr4A.!!$R1 584
15 TraesCS7D01G062300 chr4A 690879339 690886977 7638 True 414.250000 695 85.487250 705 2717 4 chr4A.!!$R3 2012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 5395 0.034767 TCTCTCTCCGCGTTTCCCTA 60.035 55.0 4.92 0.00 0.00 3.53 F
1744 6574 0.179181 GTTGGACTGCATGCACGATG 60.179 55.0 18.46 9.91 34.84 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2215 10371 0.233332 GAGAATATGGTCAAGCGCGC 59.767 55.0 26.66 26.66 0.0 6.86 R
3294 11479 0.393077 GCTAAGGATCAAGGCCGCTA 59.607 55.0 0.00 0.00 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 100 6.295719 ACAAACTATGAACTACGATTCCCT 57.704 37.500 0.00 0.00 0.00 4.20
155 157 9.753669 TTTATGCGATGAATATACAATAAAGCG 57.246 29.630 0.00 0.00 0.00 4.68
191 193 1.884235 CAGGTGTTGTTCTCCTGTCC 58.116 55.000 7.51 0.00 46.64 4.02
192 194 1.417890 CAGGTGTTGTTCTCCTGTCCT 59.582 52.381 7.51 0.00 46.64 3.85
193 195 1.417890 AGGTGTTGTTCTCCTGTCCTG 59.582 52.381 0.00 0.00 38.44 3.86
194 196 1.141053 GGTGTTGTTCTCCTGTCCTGT 59.859 52.381 0.00 0.00 0.00 4.00
205 207 1.401148 CCTGTCCTGTGACGACTTACG 60.401 57.143 0.00 0.00 44.86 3.18
213 215 2.182825 GTGACGACTTACGCGATGAAT 58.817 47.619 15.93 0.00 46.94 2.57
219 221 6.692249 TGACGACTTACGCGATGAATATTTTA 59.308 34.615 15.93 0.00 46.94 1.52
224 226 9.144085 GACTTACGCGATGAATATTTTACAAAG 57.856 33.333 15.93 0.00 0.00 2.77
226 228 5.816919 ACGCGATGAATATTTTACAAAGGG 58.183 37.500 15.93 0.00 0.00 3.95
275 277 2.985282 CGGCTTTTGGCTCCTGCA 60.985 61.111 0.00 0.00 43.55 4.41
299 305 3.391506 AAAGCAGGAGACAAATTTGCC 57.608 42.857 18.12 11.20 35.44 4.52
303 309 1.547372 CAGGAGACAAATTTGCCCAGG 59.453 52.381 18.12 9.32 0.00 4.45
304 310 1.428912 AGGAGACAAATTTGCCCAGGA 59.571 47.619 18.12 0.00 0.00 3.86
305 311 2.043526 AGGAGACAAATTTGCCCAGGAT 59.956 45.455 18.12 0.00 0.00 3.24
306 312 2.833943 GGAGACAAATTTGCCCAGGATT 59.166 45.455 18.12 0.00 0.00 3.01
307 313 3.368739 GGAGACAAATTTGCCCAGGATTG 60.369 47.826 18.12 0.00 0.00 2.67
308 314 3.509442 AGACAAATTTGCCCAGGATTGA 58.491 40.909 18.12 0.00 0.00 2.57
309 315 3.903090 AGACAAATTTGCCCAGGATTGAA 59.097 39.130 18.12 0.00 0.00 2.69
311 317 3.390639 ACAAATTTGCCCAGGATTGAACA 59.609 39.130 18.12 0.00 0.00 3.18
312 318 3.683365 AATTTGCCCAGGATTGAACAC 57.317 42.857 0.00 0.00 0.00 3.32
313 319 2.380064 TTTGCCCAGGATTGAACACT 57.620 45.000 0.00 0.00 0.00 3.55
315 321 2.489938 TGCCCAGGATTGAACACTAC 57.510 50.000 0.00 0.00 0.00 2.73
316 322 1.702401 TGCCCAGGATTGAACACTACA 59.298 47.619 0.00 0.00 0.00 2.74
317 323 2.107378 TGCCCAGGATTGAACACTACAA 59.893 45.455 0.00 0.00 0.00 2.41
318 324 2.488153 GCCCAGGATTGAACACTACAAC 59.512 50.000 0.00 0.00 0.00 3.32
319 325 3.810743 GCCCAGGATTGAACACTACAACT 60.811 47.826 0.00 0.00 0.00 3.16
329 335 6.216801 TGAACACTACAACTACAACTGAGT 57.783 37.500 0.00 0.00 0.00 3.41
359 365 5.518848 TCAATATCCATGCACACATTTCC 57.481 39.130 0.00 0.00 32.87 3.13
361 367 6.363882 TCAATATCCATGCACACATTTCCTA 58.636 36.000 0.00 0.00 32.87 2.94
408 414 0.387239 GTCCGATTGCTTTGCGCTTT 60.387 50.000 9.73 0.00 40.11 3.51
426 432 5.611374 CGCTTTCTTCCCTCCAATAGATAA 58.389 41.667 0.00 0.00 0.00 1.75
430 436 7.525158 TTTCTTCCCTCCAATAGATAACCTT 57.475 36.000 0.00 0.00 0.00 3.50
434 440 6.688073 TCCCTCCAATAGATAACCTTGATC 57.312 41.667 0.00 0.00 0.00 2.92
466 472 3.711704 CTGGCCAAAGTAAGGGATCTAGA 59.288 47.826 7.01 0.00 0.00 2.43
467 473 3.454812 TGGCCAAAGTAAGGGATCTAGAC 59.545 47.826 0.61 0.00 0.00 2.59
468 474 3.454812 GGCCAAAGTAAGGGATCTAGACA 59.545 47.826 0.00 0.00 0.00 3.41
469 475 4.103311 GGCCAAAGTAAGGGATCTAGACAT 59.897 45.833 0.00 0.00 0.00 3.06
470 476 5.301555 GCCAAAGTAAGGGATCTAGACATC 58.698 45.833 0.00 0.00 0.00 3.06
471 477 5.071115 GCCAAAGTAAGGGATCTAGACATCT 59.929 44.000 0.00 0.00 0.00 2.90
472 478 6.267928 GCCAAAGTAAGGGATCTAGACATCTA 59.732 42.308 0.00 0.00 0.00 1.98
473 479 7.524698 GCCAAAGTAAGGGATCTAGACATCTAG 60.525 44.444 9.32 9.32 45.57 2.43
480 486 5.312178 AGGGATCTAGACATCTAGTACTGCT 59.688 44.000 14.21 0.00 44.74 4.24
482 488 5.646360 GGATCTAGACATCTAGTACTGCTCC 59.354 48.000 14.21 9.03 44.74 4.70
513 519 0.389426 CAAGCCTGAGCAATGCAACC 60.389 55.000 8.35 0.00 43.56 3.77
517 523 1.545582 GCCTGAGCAATGCAACCTTTA 59.454 47.619 8.35 0.00 39.53 1.85
519 525 2.821969 CCTGAGCAATGCAACCTTTACT 59.178 45.455 8.35 0.00 0.00 2.24
520 526 4.009675 CCTGAGCAATGCAACCTTTACTA 58.990 43.478 8.35 0.00 0.00 1.82
524 530 5.588648 TGAGCAATGCAACCTTTACTATACC 59.411 40.000 8.35 0.00 0.00 2.73
531 537 4.814771 GCAACCTTTACTATACCTTGCGAT 59.185 41.667 0.00 0.00 0.00 4.58
563 569 8.806429 TTTCCTCTTAATTTATGACAGCATCA 57.194 30.769 0.00 0.00 43.13 3.07
564 570 7.792374 TCCTCTTAATTTATGACAGCATCAC 57.208 36.000 0.00 0.00 41.24 3.06
565 571 6.479990 TCCTCTTAATTTATGACAGCATCACG 59.520 38.462 0.00 0.00 41.24 4.35
567 573 6.345298 TCTTAATTTATGACAGCATCACGGA 58.655 36.000 0.00 0.00 41.24 4.69
568 574 6.992123 TCTTAATTTATGACAGCATCACGGAT 59.008 34.615 0.00 0.00 41.24 4.18
569 575 5.428496 AATTTATGACAGCATCACGGATG 57.572 39.130 8.90 8.90 41.24 3.51
570 576 3.817709 TTATGACAGCATCACGGATGA 57.182 42.857 15.42 0.00 42.09 2.92
571 577 2.696989 ATGACAGCATCACGGATGAA 57.303 45.000 15.42 0.00 42.09 2.57
573 579 1.001860 TGACAGCATCACGGATGAACA 59.998 47.619 15.42 7.77 42.09 3.18
574 580 2.283298 GACAGCATCACGGATGAACAT 58.717 47.619 15.42 0.00 42.09 2.71
575 581 2.011947 ACAGCATCACGGATGAACATG 58.988 47.619 15.42 10.55 42.09 3.21
576 582 2.011947 CAGCATCACGGATGAACATGT 58.988 47.619 15.42 0.00 42.09 3.21
577 583 3.197265 CAGCATCACGGATGAACATGTA 58.803 45.455 15.42 0.00 42.09 2.29
578 584 3.246936 CAGCATCACGGATGAACATGTAG 59.753 47.826 15.42 0.00 42.09 2.74
579 585 2.545526 GCATCACGGATGAACATGTAGG 59.454 50.000 15.42 0.00 42.09 3.18
580 586 3.741075 GCATCACGGATGAACATGTAGGA 60.741 47.826 15.42 0.00 42.09 2.94
581 587 4.441792 CATCACGGATGAACATGTAGGAA 58.558 43.478 0.00 0.00 42.09 3.36
582 588 4.545208 TCACGGATGAACATGTAGGAAA 57.455 40.909 0.00 0.00 0.00 3.13
583 589 4.900684 TCACGGATGAACATGTAGGAAAA 58.099 39.130 0.00 0.00 0.00 2.29
585 591 4.935205 CACGGATGAACATGTAGGAAAAGA 59.065 41.667 0.00 0.00 0.00 2.52
586 592 5.063944 CACGGATGAACATGTAGGAAAAGAG 59.936 44.000 0.00 0.00 0.00 2.85
587 593 5.046591 ACGGATGAACATGTAGGAAAAGAGA 60.047 40.000 0.00 0.00 0.00 3.10
588 594 5.521735 CGGATGAACATGTAGGAAAAGAGAG 59.478 44.000 0.00 0.00 0.00 3.20
589 595 6.628175 CGGATGAACATGTAGGAAAAGAGAGA 60.628 42.308 0.00 0.00 0.00 3.10
590 596 7.106239 GGATGAACATGTAGGAAAAGAGAGAA 58.894 38.462 0.00 0.00 0.00 2.87
591 597 7.607991 GGATGAACATGTAGGAAAAGAGAGAAA 59.392 37.037 0.00 0.00 0.00 2.52
592 598 7.730364 TGAACATGTAGGAAAAGAGAGAAAC 57.270 36.000 0.00 0.00 0.00 2.78
594 600 5.238583 ACATGTAGGAAAAGAGAGAAACGG 58.761 41.667 0.00 0.00 0.00 4.44
596 602 3.323979 TGTAGGAAAAGAGAGAAACGGCT 59.676 43.478 0.00 0.00 0.00 5.52
599 605 1.873591 GAAAAGAGAGAAACGGCTGCA 59.126 47.619 0.50 0.00 0.00 4.41
600 606 1.230324 AAAGAGAGAAACGGCTGCAC 58.770 50.000 0.50 0.00 0.00 4.57
601 607 0.106708 AAGAGAGAAACGGCTGCACA 59.893 50.000 0.50 0.00 0.00 4.57
602 608 0.601311 AGAGAGAAACGGCTGCACAC 60.601 55.000 0.50 0.00 0.00 3.82
603 609 1.891060 GAGAGAAACGGCTGCACACG 61.891 60.000 0.50 3.92 0.00 4.49
604 610 3.579626 GAGAAACGGCTGCACACGC 62.580 63.158 0.50 0.00 39.24 5.34
606 612 4.250431 AAACGGCTGCACACGCAC 62.250 61.111 0.50 0.00 45.36 5.34
610 616 3.118454 GGCTGCACACGCACGTAT 61.118 61.111 0.50 0.00 45.36 3.06
611 617 2.096406 GCTGCACACGCACGTATG 59.904 61.111 0.00 0.00 45.36 2.39
613 619 1.896339 GCTGCACACGCACGTATGAA 61.896 55.000 5.51 0.00 45.36 2.57
614 620 0.179250 CTGCACACGCACGTATGAAC 60.179 55.000 5.51 0.00 45.36 3.18
616 622 0.442310 GCACACGCACGTATGAACAT 59.558 50.000 5.51 0.00 38.36 2.71
617 623 1.786575 GCACACGCACGTATGAACATG 60.787 52.381 5.51 0.00 38.36 3.21
618 624 1.724082 CACACGCACGTATGAACATGA 59.276 47.619 0.00 0.00 0.00 3.07
619 625 2.156697 CACACGCACGTATGAACATGAA 59.843 45.455 0.00 0.00 0.00 2.57
621 627 1.393539 ACGCACGTATGAACATGAAGC 59.606 47.619 0.00 0.00 0.00 3.86
622 628 1.393196 CGCACGTATGAACATGAAGCA 59.607 47.619 0.00 0.00 0.00 3.91
624 630 3.666638 CGCACGTATGAACATGAAGCAAA 60.667 43.478 0.00 0.00 0.00 3.68
625 631 4.225984 GCACGTATGAACATGAAGCAAAA 58.774 39.130 0.00 0.00 0.00 2.44
626 632 4.321745 GCACGTATGAACATGAAGCAAAAG 59.678 41.667 0.00 0.00 0.00 2.27
627 633 5.688823 CACGTATGAACATGAAGCAAAAGA 58.311 37.500 0.00 0.00 0.00 2.52
629 635 6.303970 CACGTATGAACATGAAGCAAAAGAAG 59.696 38.462 0.00 0.00 0.00 2.85
630 636 6.204688 ACGTATGAACATGAAGCAAAAGAAGA 59.795 34.615 0.00 0.00 0.00 2.87
631 637 6.740002 CGTATGAACATGAAGCAAAAGAAGAG 59.260 38.462 0.00 0.00 0.00 2.85
632 638 6.889301 ATGAACATGAAGCAAAAGAAGAGA 57.111 33.333 0.00 0.00 0.00 3.10
633 639 6.309712 TGAACATGAAGCAAAAGAAGAGAG 57.690 37.500 0.00 0.00 0.00 3.20
634 640 6.057533 TGAACATGAAGCAAAAGAAGAGAGA 58.942 36.000 0.00 0.00 0.00 3.10
635 641 6.713903 TGAACATGAAGCAAAAGAAGAGAGAT 59.286 34.615 0.00 0.00 0.00 2.75
636 642 6.740411 ACATGAAGCAAAAGAAGAGAGATC 57.260 37.500 0.00 0.00 0.00 2.75
637 643 5.350914 ACATGAAGCAAAAGAAGAGAGATCG 59.649 40.000 0.00 0.00 0.00 3.69
638 644 4.887748 TGAAGCAAAAGAAGAGAGATCGT 58.112 39.130 0.00 0.00 0.00 3.73
640 646 4.527509 AGCAAAAGAAGAGAGATCGTGA 57.472 40.909 0.00 0.00 0.00 4.35
642 648 3.990469 GCAAAAGAAGAGAGATCGTGACA 59.010 43.478 0.00 0.00 0.00 3.58
643 649 4.143221 GCAAAAGAAGAGAGATCGTGACAC 60.143 45.833 0.00 0.00 0.00 3.67
644 650 3.859411 AAGAAGAGAGATCGTGACACC 57.141 47.619 0.00 0.00 0.00 4.16
645 651 1.740585 AGAAGAGAGATCGTGACACCG 59.259 52.381 0.00 0.00 0.00 4.94
646 652 1.469308 GAAGAGAGATCGTGACACCGT 59.531 52.381 0.00 0.00 0.00 4.83
648 654 1.469308 AGAGAGATCGTGACACCGTTC 59.531 52.381 0.00 0.96 0.00 3.95
649 655 1.469308 GAGAGATCGTGACACCGTTCT 59.531 52.381 0.00 5.54 39.04 3.01
650 656 1.887198 AGAGATCGTGACACCGTTCTT 59.113 47.619 0.00 0.00 37.11 2.52
651 657 1.986378 GAGATCGTGACACCGTTCTTG 59.014 52.381 0.00 0.00 37.11 3.02
652 658 1.340248 AGATCGTGACACCGTTCTTGT 59.660 47.619 0.00 0.00 34.21 3.16
654 660 0.593008 TCGTGACACCGTTCTTGTCG 60.593 55.000 0.00 0.00 45.44 4.35
655 661 1.563173 GTGACACCGTTCTTGTCGC 59.437 57.895 0.00 0.67 45.44 5.19
657 663 2.654912 GACACCGTTCTTGTCGCCG 61.655 63.158 0.00 0.00 34.41 6.46
658 664 2.355363 CACCGTTCTTGTCGCCGA 60.355 61.111 0.00 0.00 0.00 5.54
659 665 1.736645 CACCGTTCTTGTCGCCGAT 60.737 57.895 0.00 0.00 0.00 4.18
661 667 2.505498 CCGTTCTTGTCGCCGATCG 61.505 63.158 8.51 8.51 40.15 3.69
662 668 1.513373 CGTTCTTGTCGCCGATCGA 60.513 57.895 18.66 0.00 46.29 3.59
669 675 3.583086 TCGCCGATCGATGACGCT 61.583 61.111 18.66 0.00 43.16 5.07
670 676 3.390017 CGCCGATCGATGACGCTG 61.390 66.667 18.66 3.96 41.67 5.18
671 677 2.278857 GCCGATCGATGACGCTGT 60.279 61.111 18.66 0.00 39.58 4.40
673 679 0.594028 GCCGATCGATGACGCTGTTA 60.594 55.000 18.66 0.00 39.58 2.41
674 680 1.399572 CCGATCGATGACGCTGTTAG 58.600 55.000 18.66 0.00 39.58 2.34
676 682 1.775770 CGATCGATGACGCTGTTAGTG 59.224 52.381 10.26 0.00 39.58 2.74
681 687 2.069273 GATGACGCTGTTAGTGCTGTT 58.931 47.619 0.00 0.00 0.00 3.16
682 688 1.217001 TGACGCTGTTAGTGCTGTTG 58.783 50.000 0.00 0.00 0.00 3.33
683 689 0.110644 GACGCTGTTAGTGCTGTTGC 60.111 55.000 0.00 0.00 40.20 4.17
693 699 1.227102 TGCTGTTGCAGAGGTGGTT 59.773 52.632 0.00 0.00 45.31 3.67
694 700 0.472044 TGCTGTTGCAGAGGTGGTTA 59.528 50.000 0.00 0.00 45.31 2.85
695 701 0.875059 GCTGTTGCAGAGGTGGTTAC 59.125 55.000 0.00 0.00 39.41 2.50
696 702 1.148310 CTGTTGCAGAGGTGGTTACG 58.852 55.000 0.00 0.00 32.44 3.18
697 703 0.250124 TGTTGCAGAGGTGGTTACGG 60.250 55.000 0.00 0.00 0.00 4.02
698 704 0.250166 GTTGCAGAGGTGGTTACGGT 60.250 55.000 0.00 0.00 0.00 4.83
699 705 0.250124 TTGCAGAGGTGGTTACGGTG 60.250 55.000 0.00 0.00 0.00 4.94
700 706 1.375523 GCAGAGGTGGTTACGGTGG 60.376 63.158 0.00 0.00 0.00 4.61
701 707 1.375523 CAGAGGTGGTTACGGTGGC 60.376 63.158 0.00 0.00 0.00 5.01
702 708 2.046604 GAGGTGGTTACGGTGGCC 60.047 66.667 0.00 0.00 0.00 5.36
704 710 2.193087 GAGGTGGTTACGGTGGCCAT 62.193 60.000 9.72 0.00 34.52 4.40
705 711 2.043980 GGTGGTTACGGTGGCCATG 61.044 63.158 9.72 7.70 34.52 3.66
706 712 2.043980 GTGGTTACGGTGGCCATGG 61.044 63.158 9.72 7.63 34.52 3.66
707 713 3.138128 GGTTACGGTGGCCATGGC 61.138 66.667 29.47 29.47 41.06 4.40
708 714 2.360600 GTTACGGTGGCCATGGCA 60.361 61.111 36.56 20.63 44.11 4.92
738 5110 0.944386 CCTGATGATTTTACCCGGCG 59.056 55.000 0.00 0.00 0.00 6.46
743 5115 1.078285 GATTTTACCCGGCGGTGGA 60.078 57.895 26.32 10.47 44.40 4.02
759 5140 4.459089 GAGGTGACGCAGAGGGGC 62.459 72.222 0.00 0.00 0.00 5.80
786 5167 1.491668 GGTTTGGGGTGTGGTTTTCT 58.508 50.000 0.00 0.00 0.00 2.52
789 5170 2.498078 GTTTGGGGTGTGGTTTTCTTGA 59.502 45.455 0.00 0.00 0.00 3.02
790 5171 2.065899 TGGGGTGTGGTTTTCTTGAG 57.934 50.000 0.00 0.00 0.00 3.02
791 5172 1.566703 TGGGGTGTGGTTTTCTTGAGA 59.433 47.619 0.00 0.00 0.00 3.27
792 5173 2.176798 TGGGGTGTGGTTTTCTTGAGAT 59.823 45.455 0.00 0.00 0.00 2.75
825 5206 2.509336 GTCATGGCTCCGGACGTG 60.509 66.667 0.00 3.64 38.78 4.49
826 5207 2.678580 TCATGGCTCCGGACGTGA 60.679 61.111 11.84 11.84 43.56 4.35
828 5209 1.884464 CATGGCTCCGGACGTGATG 60.884 63.158 0.00 0.00 39.77 3.07
829 5210 2.359169 ATGGCTCCGGACGTGATGT 61.359 57.895 0.00 0.00 0.00 3.06
830 5211 1.899437 ATGGCTCCGGACGTGATGTT 61.899 55.000 0.00 0.00 0.00 2.71
831 5212 2.100631 GGCTCCGGACGTGATGTTG 61.101 63.158 0.00 0.00 0.00 3.33
832 5213 2.100631 GCTCCGGACGTGATGTTGG 61.101 63.158 0.00 0.00 0.00 3.77
835 5216 3.124921 CGGACGTGATGTTGGCCC 61.125 66.667 0.00 0.00 0.00 5.80
836 5217 2.750237 GGACGTGATGTTGGCCCC 60.750 66.667 0.00 0.00 0.00 5.80
837 5218 2.351276 GACGTGATGTTGGCCCCT 59.649 61.111 0.00 0.00 0.00 4.79
838 5219 1.745489 GACGTGATGTTGGCCCCTC 60.745 63.158 0.00 0.00 0.00 4.30
839 5220 2.185310 GACGTGATGTTGGCCCCTCT 62.185 60.000 0.00 0.00 0.00 3.69
840 5221 1.450312 CGTGATGTTGGCCCCTCTC 60.450 63.158 0.00 0.00 0.00 3.20
841 5222 1.077429 GTGATGTTGGCCCCTCTCC 60.077 63.158 0.00 0.00 0.00 3.71
842 5223 1.229951 TGATGTTGGCCCCTCTCCT 60.230 57.895 0.00 0.00 0.00 3.69
843 5224 0.846427 TGATGTTGGCCCCTCTCCTT 60.846 55.000 0.00 0.00 0.00 3.36
844 5225 0.332972 GATGTTGGCCCCTCTCCTTT 59.667 55.000 0.00 0.00 0.00 3.11
845 5226 0.332972 ATGTTGGCCCCTCTCCTTTC 59.667 55.000 0.00 0.00 0.00 2.62
846 5227 1.000771 GTTGGCCCCTCTCCTTTCC 60.001 63.158 0.00 0.00 0.00 3.13
847 5228 1.151587 TTGGCCCCTCTCCTTTCCT 60.152 57.895 0.00 0.00 0.00 3.36
848 5229 1.500783 TTGGCCCCTCTCCTTTCCTG 61.501 60.000 0.00 0.00 0.00 3.86
849 5230 2.684499 GGCCCCTCTCCTTTCCTGG 61.684 68.421 0.00 0.00 0.00 4.45
850 5231 3.002371 CCCCTCTCCTTTCCTGGC 58.998 66.667 0.00 0.00 0.00 4.85
851 5232 2.684499 CCCCTCTCCTTTCCTGGCC 61.684 68.421 0.00 0.00 0.00 5.36
852 5233 1.925455 CCCTCTCCTTTCCTGGCCA 60.925 63.158 4.71 4.71 0.00 5.36
853 5234 1.284841 CCCTCTCCTTTCCTGGCCAT 61.285 60.000 5.51 0.00 0.00 4.40
854 5235 0.182299 CCTCTCCTTTCCTGGCCATC 59.818 60.000 5.51 0.00 0.00 3.51
855 5236 1.211456 CTCTCCTTTCCTGGCCATCT 58.789 55.000 5.51 0.00 0.00 2.90
856 5237 1.563410 CTCTCCTTTCCTGGCCATCTT 59.437 52.381 5.51 0.00 0.00 2.40
903 5284 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
914 5395 0.034767 TCTCTCTCCGCGTTTCCCTA 60.035 55.000 4.92 0.00 0.00 3.53
925 5465 2.878526 GCGTTTCCCTATCAAGGTTGGT 60.879 50.000 0.00 0.00 41.89 3.67
937 5477 1.938585 AGGTTGGTGCTAGAGCTGTA 58.061 50.000 2.72 0.00 42.66 2.74
942 5482 1.066587 GTGCTAGAGCTGTAGCCGG 59.933 63.158 32.93 0.00 44.23 6.13
1017 5567 2.092103 TGCAGTTGTTTCCTTGTACCCT 60.092 45.455 0.00 0.00 0.00 4.34
1018 5568 2.293399 GCAGTTGTTTCCTTGTACCCTG 59.707 50.000 0.00 0.00 0.00 4.45
1033 5583 1.358759 CCTGTCACCGGCAACAAAC 59.641 57.895 0.00 0.00 0.00 2.93
1034 5584 1.101049 CCTGTCACCGGCAACAAACT 61.101 55.000 0.00 0.00 0.00 2.66
1059 5609 1.248785 TTCCCCTCAACTCGACTCCG 61.249 60.000 0.00 0.00 37.07 4.63
1091 5767 3.405831 TCCATTTCGATCATGAGCATCC 58.594 45.455 12.15 0.00 0.00 3.51
1093 5769 1.869774 TTTCGATCATGAGCATCCCG 58.130 50.000 12.15 3.34 0.00 5.14
1159 5835 2.493973 GAGGAGGAGCTGCTCACG 59.506 66.667 32.72 0.00 46.01 4.35
1261 5937 0.984230 GGGACATCCAAGGTCAGTGA 59.016 55.000 0.00 0.00 37.00 3.41
1262 5938 1.339151 GGGACATCCAAGGTCAGTGAC 60.339 57.143 15.24 15.24 37.00 3.67
1264 5940 2.039084 GGACATCCAAGGTCAGTGACTT 59.961 50.000 22.18 12.89 37.00 3.01
1290 5970 5.973899 TCCTTCATCCATCGAGATCTTAG 57.026 43.478 0.00 0.00 0.00 2.18
1293 5973 5.242615 CCTTCATCCATCGAGATCTTAGACA 59.757 44.000 0.00 0.00 0.00 3.41
1294 5974 5.697473 TCATCCATCGAGATCTTAGACAC 57.303 43.478 0.00 0.00 0.00 3.67
1318 6059 1.299541 CTCCACAATGCGTACCCATC 58.700 55.000 0.00 0.00 0.00 3.51
1332 6073 3.992943 ACCCATCGTGAACTAATTGGA 57.007 42.857 0.00 0.00 0.00 3.53
1334 6075 2.943033 CCCATCGTGAACTAATTGGACC 59.057 50.000 0.00 0.00 0.00 4.46
1618 6364 4.927444 TCGACGACGCCGCAACAA 62.927 61.111 1.48 0.00 39.95 2.83
1620 6366 3.335534 GACGACGCCGCAACAACT 61.336 61.111 0.00 0.00 39.95 3.16
1673 6458 2.910994 CCCCTACTACTCCGGCGG 60.911 72.222 22.51 22.51 0.00 6.13
1724 6553 6.075918 CACACTGTACAACGTACTGTAGTAG 58.924 44.000 14.06 5.51 32.49 2.57
1742 6572 1.965930 GGTTGGACTGCATGCACGA 60.966 57.895 18.46 4.23 0.00 4.35
1743 6573 1.308069 GGTTGGACTGCATGCACGAT 61.308 55.000 18.46 5.02 0.00 3.73
1744 6574 0.179181 GTTGGACTGCATGCACGATG 60.179 55.000 18.46 9.91 34.84 3.84
1745 6575 1.307355 TTGGACTGCATGCACGATGG 61.307 55.000 18.46 9.49 31.99 3.51
1746 6576 2.406401 GACTGCATGCACGATGGC 59.594 61.111 18.46 5.34 31.99 4.40
1875 9451 5.212194 ACGTTCCATTCGAAAATTCAACAG 58.788 37.500 0.00 1.73 30.39 3.16
1934 10002 7.319142 TCGATCTGATGCAAATTAATTGACA 57.681 32.000 0.39 3.78 41.85 3.58
2068 10197 3.741476 CCAAGCTGGCCAGAACGC 61.741 66.667 37.21 21.93 0.00 4.84
2207 10363 2.828128 GCAGCATTACTCCGCCAGC 61.828 63.158 0.00 0.00 0.00 4.85
2208 10364 2.202932 AGCATTACTCCGCCAGCG 60.203 61.111 4.75 4.75 39.44 5.18
2209 10365 2.202878 GCATTACTCCGCCAGCGA 60.203 61.111 14.67 0.00 42.83 4.93
2249 10405 5.008019 CCATATTCTCAACCAGTACATGCAC 59.992 44.000 0.00 0.00 0.00 4.57
2455 10623 3.636231 CTGGGACGCCCTTGACCA 61.636 66.667 14.76 0.00 45.70 4.02
2719 10889 2.549926 AGCCCAAACTTTCTTTTTGCG 58.450 42.857 0.00 0.00 33.37 4.85
2721 10891 1.257675 CCCAAACTTTCTTTTTGCGCG 59.742 47.619 0.00 0.00 33.37 6.86
2728 10898 0.306533 TTCTTTTTGCGCGAGGACAC 59.693 50.000 12.10 0.00 0.00 3.67
2744 10914 8.565416 CGCGAGGACACTATTATATATATGGAA 58.435 37.037 0.00 0.00 0.00 3.53
2810 10985 5.095145 AGATGTGCACAGTCAATATGTCT 57.905 39.130 25.84 15.97 0.00 3.41
2885 11069 5.482878 AGATAAACAACCTAAGACGGAGGAA 59.517 40.000 2.96 0.00 37.53 3.36
2889 11073 1.461559 ACCTAAGACGGAGGAAGTCG 58.538 55.000 2.96 0.00 42.97 4.18
2949 11133 3.535561 CCGATGTAAAATCCAGCAGACT 58.464 45.455 0.00 0.00 0.00 3.24
2950 11134 3.310774 CCGATGTAAAATCCAGCAGACTG 59.689 47.826 0.00 0.00 44.05 3.51
2954 11138 4.569943 TGTAAAATCCAGCAGACTGTCTC 58.430 43.478 7.49 3.43 42.81 3.36
2997 11181 1.107114 CTAGAAGGGAAGCAGCGAGA 58.893 55.000 0.00 0.00 0.00 4.04
3025 11209 1.839424 CCCATGTTCAGGGTTTCTCC 58.161 55.000 2.91 0.00 41.61 3.71
3042 11226 5.757099 TTCTCCCTCGAGATAAAAACCTT 57.243 39.130 15.71 0.00 44.68 3.50
3092 11277 5.506708 GGGTGTACAAGGTAAAGGATGATT 58.493 41.667 0.00 0.00 0.00 2.57
3149 11334 2.245028 TCTATGTCCAGTGACTAGCCCT 59.755 50.000 0.00 0.00 42.28 5.19
3154 11339 1.639108 TCCAGTGACTAGCCCTGTCTA 59.361 52.381 0.00 0.00 35.63 2.59
3189 11374 2.368875 CGATGAGGCCTAGGGTTACAAT 59.631 50.000 4.42 0.00 0.00 2.71
3261 11446 1.790623 CTTGTCGTGTACTCCAAACCG 59.209 52.381 0.00 0.00 0.00 4.44
3262 11447 0.598158 TGTCGTGTACTCCAAACCGC 60.598 55.000 0.00 0.00 0.00 5.68
3271 11456 2.124507 CTCCAAACCGCCTCCTTCCA 62.125 60.000 0.00 0.00 0.00 3.53
3278 11463 1.821332 CGCCTCCTTCCATCTTGGC 60.821 63.158 0.00 0.00 37.47 4.52
3279 11464 1.304282 GCCTCCTTCCATCTTGGCA 59.696 57.895 0.00 0.00 40.04 4.92
3280 11465 0.750911 GCCTCCTTCCATCTTGGCAG 60.751 60.000 0.00 0.00 40.04 4.85
3282 11467 3.930504 CCTTCCATCTTGGCAGGC 58.069 61.111 0.00 0.00 43.72 4.85
3283 11468 1.755783 CCTTCCATCTTGGCAGGCC 60.756 63.158 2.62 2.62 43.72 5.19
3284 11469 1.000521 CTTCCATCTTGGCAGGCCA 60.001 57.895 9.35 9.35 45.63 5.36
3295 11480 2.676608 CAGGCCACATGCAGGGTA 59.323 61.111 5.01 0.00 43.89 3.69
3296 11481 1.452651 CAGGCCACATGCAGGGTAG 60.453 63.158 5.01 0.00 43.89 3.18
3297 11482 2.830370 GGCCACATGCAGGGTAGC 60.830 66.667 2.31 3.10 43.89 3.58
3298 11483 3.204827 GCCACATGCAGGGTAGCG 61.205 66.667 2.31 0.00 40.77 4.26
3299 11484 2.514592 CCACATGCAGGGTAGCGG 60.515 66.667 2.31 0.00 37.31 5.52
3300 11485 3.204827 CACATGCAGGGTAGCGGC 61.205 66.667 2.31 0.00 37.31 6.53
3301 11486 4.489771 ACATGCAGGGTAGCGGCC 62.490 66.667 2.31 0.00 37.31 6.13
3302 11487 4.181010 CATGCAGGGTAGCGGCCT 62.181 66.667 0.00 0.00 37.31 5.19
3303 11488 3.411517 ATGCAGGGTAGCGGCCTT 61.412 61.111 0.00 0.00 37.31 4.35
3342 11542 0.179108 GGGCGTCTAGGTGACATGTC 60.179 60.000 19.27 19.27 45.60 3.06
3374 11574 5.556194 CGAAAAGCAAAATAAGCCACAACAC 60.556 40.000 0.00 0.00 0.00 3.32
3380 11580 5.556194 GCAAAATAAGCCACAACACGAAAAG 60.556 40.000 0.00 0.00 0.00 2.27
3422 11622 6.659242 AGATCTTAATTGTTGAACCGACCATT 59.341 34.615 0.00 0.00 0.00 3.16
3527 11727 8.575649 AAAACCGTTTTGACTCCTATTGATAT 57.424 30.769 8.46 0.00 0.00 1.63
3583 11783 3.118665 GGCCTACACGTATTCCTAAACCA 60.119 47.826 0.00 0.00 0.00 3.67
3589 11789 7.765360 CCTACACGTATTCCTAAACCAACAATA 59.235 37.037 0.00 0.00 0.00 1.90
3761 11979 4.495422 ACTCGTAGCAACATCACTTTAGG 58.505 43.478 0.00 0.00 0.00 2.69
3766 11984 5.163953 CGTAGCAACATCACTTTAGGTTCAG 60.164 44.000 0.00 0.00 0.00 3.02
3778 11996 8.816894 TCACTTTAGGTTCAGAATAGAAGACAT 58.183 33.333 0.00 0.00 0.00 3.06
3800 12018 2.736144 ATAAACTCGTGAAGCGGACA 57.264 45.000 0.00 0.00 41.72 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 81 9.584008 TTTATAGAGGGAATCGTAGTTCATAGT 57.416 33.333 0.00 0.00 0.00 2.12
84 86 8.989980 CCAAATTTATAGAGGGAATCGTAGTTC 58.010 37.037 0.00 0.00 0.00 3.01
91 93 9.354673 TCATTGACCAAATTTATAGAGGGAATC 57.645 33.333 0.00 0.00 0.00 2.52
133 135 6.422400 TCACGCTTTATTGTATATTCATCGCA 59.578 34.615 0.00 0.00 0.00 5.10
134 136 6.817396 TCACGCTTTATTGTATATTCATCGC 58.183 36.000 0.00 0.00 0.00 4.58
155 157 6.619801 ACACCTGTTGACTTTAGATTTCAC 57.380 37.500 0.00 0.00 0.00 3.18
190 192 0.179171 ATCGCGTAAGTCGTCACAGG 60.179 55.000 5.77 0.00 42.13 4.00
191 193 0.907837 CATCGCGTAAGTCGTCACAG 59.092 55.000 5.77 0.00 42.13 3.66
192 194 0.518195 TCATCGCGTAAGTCGTCACA 59.482 50.000 5.77 0.00 42.13 3.58
193 195 1.609932 TTCATCGCGTAAGTCGTCAC 58.390 50.000 5.77 0.00 42.13 3.67
194 196 2.554806 ATTCATCGCGTAAGTCGTCA 57.445 45.000 5.77 0.00 42.13 4.35
205 207 8.871686 AATTCCCTTTGTAAAATATTCATCGC 57.128 30.769 0.00 0.00 0.00 4.58
219 221 9.927668 CAAATCTGTACAAATAATTCCCTTTGT 57.072 29.630 14.42 14.42 45.07 2.83
224 226 9.788960 GACTTCAAATCTGTACAAATAATTCCC 57.211 33.333 0.00 0.00 0.00 3.97
235 237 5.746245 CGAGATGGAGACTTCAAATCTGTAC 59.254 44.000 0.00 0.00 36.99 2.90
275 277 4.502087 GCAAATTTGTCTCCTGCTTTTCCT 60.502 41.667 19.03 0.00 0.00 3.36
299 305 5.547465 TGTAGTTGTAGTGTTCAATCCTGG 58.453 41.667 0.00 0.00 0.00 4.45
303 309 7.438459 ACTCAGTTGTAGTTGTAGTGTTCAATC 59.562 37.037 0.00 0.00 0.00 2.67
304 310 7.272978 ACTCAGTTGTAGTTGTAGTGTTCAAT 58.727 34.615 0.00 0.00 0.00 2.57
305 311 6.636705 ACTCAGTTGTAGTTGTAGTGTTCAA 58.363 36.000 0.00 0.00 0.00 2.69
306 312 6.216801 ACTCAGTTGTAGTTGTAGTGTTCA 57.783 37.500 0.00 0.00 0.00 3.18
307 313 6.934210 CAACTCAGTTGTAGTTGTAGTGTTC 58.066 40.000 9.61 0.00 45.65 3.18
308 314 6.903883 CAACTCAGTTGTAGTTGTAGTGTT 57.096 37.500 9.61 0.00 45.65 3.32
319 325 7.280876 GGATATTGATTCTGCAACTCAGTTGTA 59.719 37.037 18.89 13.68 44.40 2.41
329 335 4.645588 TGTGCATGGATATTGATTCTGCAA 59.354 37.500 0.00 0.00 39.56 4.08
359 365 6.820470 TTTGACTTTTGCAAAACCGATTAG 57.180 33.333 20.46 11.42 32.75 1.73
361 367 6.487689 TTTTTGACTTTTGCAAAACCGATT 57.512 29.167 20.46 3.08 42.82 3.34
408 414 6.209774 TCAAGGTTATCTATTGGAGGGAAGA 58.790 40.000 0.00 0.00 0.00 2.87
426 432 1.065928 GCCGACGATCGATCAAGGT 59.934 57.895 24.34 14.38 43.74 3.50
430 436 2.721859 CCAGCCGACGATCGATCA 59.278 61.111 24.34 0.00 43.74 2.92
434 440 4.812476 TTGGCCAGCCGACGATCG 62.812 66.667 14.88 14.88 40.07 3.69
466 472 4.551671 AGGATTGGAGCAGTACTAGATGT 58.448 43.478 0.00 0.00 0.00 3.06
467 473 4.021544 GGAGGATTGGAGCAGTACTAGATG 60.022 50.000 0.00 0.00 0.00 2.90
468 474 4.156477 GGAGGATTGGAGCAGTACTAGAT 58.844 47.826 0.00 0.00 0.00 1.98
469 475 3.052869 TGGAGGATTGGAGCAGTACTAGA 60.053 47.826 0.00 0.00 0.00 2.43
470 476 3.300388 TGGAGGATTGGAGCAGTACTAG 58.700 50.000 0.00 0.00 0.00 2.57
471 477 3.398318 TGGAGGATTGGAGCAGTACTA 57.602 47.619 0.00 0.00 0.00 1.82
472 478 2.237392 GTTGGAGGATTGGAGCAGTACT 59.763 50.000 0.00 0.00 0.00 2.73
473 479 2.633488 GTTGGAGGATTGGAGCAGTAC 58.367 52.381 0.00 0.00 0.00 2.73
480 486 0.039618 GGCTTGGTTGGAGGATTGGA 59.960 55.000 0.00 0.00 0.00 3.53
482 488 1.180029 CAGGCTTGGTTGGAGGATTG 58.820 55.000 0.00 0.00 0.00 2.67
513 519 7.709269 TTAAGCATCGCAAGGTATAGTAAAG 57.291 36.000 0.00 0.00 38.47 1.85
517 523 6.204882 GGAAATTAAGCATCGCAAGGTATAGT 59.795 38.462 0.00 0.00 38.47 2.12
519 525 6.296026 AGGAAATTAAGCATCGCAAGGTATA 58.704 36.000 0.00 0.00 38.47 1.47
520 526 5.133221 AGGAAATTAAGCATCGCAAGGTAT 58.867 37.500 0.00 0.00 38.47 2.73
524 530 4.889832 AGAGGAAATTAAGCATCGCAAG 57.110 40.909 0.00 0.00 0.00 4.01
557 563 2.408271 ACATGTTCATCCGTGATGCT 57.592 45.000 0.00 0.00 39.63 3.79
558 564 2.545526 CCTACATGTTCATCCGTGATGC 59.454 50.000 2.30 0.00 39.63 3.91
560 566 4.753516 TTCCTACATGTTCATCCGTGAT 57.246 40.909 2.30 0.00 33.56 3.06
561 567 4.545208 TTTCCTACATGTTCATCCGTGA 57.455 40.909 2.30 0.00 0.00 4.35
563 569 5.046591 TCTCTTTTCCTACATGTTCATCCGT 60.047 40.000 2.30 0.00 0.00 4.69
564 570 5.419542 TCTCTTTTCCTACATGTTCATCCG 58.580 41.667 2.30 0.00 0.00 4.18
565 571 6.644347 TCTCTCTTTTCCTACATGTTCATCC 58.356 40.000 2.30 0.00 0.00 3.51
567 573 7.118390 CGTTTCTCTCTTTTCCTACATGTTCAT 59.882 37.037 2.30 0.00 0.00 2.57
568 574 6.423905 CGTTTCTCTCTTTTCCTACATGTTCA 59.576 38.462 2.30 0.00 0.00 3.18
569 575 6.128526 CCGTTTCTCTCTTTTCCTACATGTTC 60.129 42.308 2.30 0.00 0.00 3.18
570 576 5.701290 CCGTTTCTCTCTTTTCCTACATGTT 59.299 40.000 2.30 0.00 0.00 2.71
571 577 5.238583 CCGTTTCTCTCTTTTCCTACATGT 58.761 41.667 2.69 2.69 0.00 3.21
573 579 4.020128 AGCCGTTTCTCTCTTTTCCTACAT 60.020 41.667 0.00 0.00 0.00 2.29
574 580 3.323979 AGCCGTTTCTCTCTTTTCCTACA 59.676 43.478 0.00 0.00 0.00 2.74
575 581 3.680458 CAGCCGTTTCTCTCTTTTCCTAC 59.320 47.826 0.00 0.00 0.00 3.18
576 582 3.864921 GCAGCCGTTTCTCTCTTTTCCTA 60.865 47.826 0.00 0.00 0.00 2.94
577 583 2.772287 CAGCCGTTTCTCTCTTTTCCT 58.228 47.619 0.00 0.00 0.00 3.36
578 584 1.197949 GCAGCCGTTTCTCTCTTTTCC 59.802 52.381 0.00 0.00 0.00 3.13
579 585 1.873591 TGCAGCCGTTTCTCTCTTTTC 59.126 47.619 0.00 0.00 0.00 2.29
580 586 1.604278 GTGCAGCCGTTTCTCTCTTTT 59.396 47.619 0.00 0.00 0.00 2.27
581 587 1.230324 GTGCAGCCGTTTCTCTCTTT 58.770 50.000 0.00 0.00 0.00 2.52
582 588 0.106708 TGTGCAGCCGTTTCTCTCTT 59.893 50.000 0.00 0.00 0.00 2.85
583 589 0.601311 GTGTGCAGCCGTTTCTCTCT 60.601 55.000 0.00 0.00 0.00 3.10
585 591 1.956170 CGTGTGCAGCCGTTTCTCT 60.956 57.895 0.00 0.00 0.00 3.10
586 592 2.551270 CGTGTGCAGCCGTTTCTC 59.449 61.111 0.00 0.00 0.00 2.87
587 593 3.649986 GCGTGTGCAGCCGTTTCT 61.650 61.111 6.78 0.00 42.15 2.52
599 605 2.073117 TCATGTTCATACGTGCGTGT 57.927 45.000 7.55 0.00 40.41 4.49
600 606 2.784327 GCTTCATGTTCATACGTGCGTG 60.784 50.000 7.55 0.00 40.41 5.34
601 607 1.393539 GCTTCATGTTCATACGTGCGT 59.606 47.619 0.00 2.05 40.41 5.24
602 608 1.393196 TGCTTCATGTTCATACGTGCG 59.607 47.619 0.00 0.00 40.41 5.34
603 609 3.469899 TTGCTTCATGTTCATACGTGC 57.530 42.857 0.00 0.00 40.41 5.34
604 610 5.688823 TCTTTTGCTTCATGTTCATACGTG 58.311 37.500 0.00 0.00 41.69 4.49
606 612 6.602179 TCTTCTTTTGCTTCATGTTCATACG 58.398 36.000 0.00 0.00 0.00 3.06
607 613 7.810658 TCTCTTCTTTTGCTTCATGTTCATAC 58.189 34.615 0.00 0.00 0.00 2.39
609 615 6.713903 TCTCTCTTCTTTTGCTTCATGTTCAT 59.286 34.615 0.00 0.00 0.00 2.57
610 616 6.057533 TCTCTCTTCTTTTGCTTCATGTTCA 58.942 36.000 0.00 0.00 0.00 3.18
611 617 6.551385 TCTCTCTTCTTTTGCTTCATGTTC 57.449 37.500 0.00 0.00 0.00 3.18
613 619 5.350914 CGATCTCTCTTCTTTTGCTTCATGT 59.649 40.000 0.00 0.00 0.00 3.21
614 620 5.350914 ACGATCTCTCTTCTTTTGCTTCATG 59.649 40.000 0.00 0.00 0.00 3.07
616 622 4.687948 CACGATCTCTCTTCTTTTGCTTCA 59.312 41.667 0.00 0.00 0.00 3.02
617 623 4.926238 TCACGATCTCTCTTCTTTTGCTTC 59.074 41.667 0.00 0.00 0.00 3.86
618 624 4.688413 GTCACGATCTCTCTTCTTTTGCTT 59.312 41.667 0.00 0.00 0.00 3.91
619 625 4.241681 GTCACGATCTCTCTTCTTTTGCT 58.758 43.478 0.00 0.00 0.00 3.91
621 627 4.387256 GGTGTCACGATCTCTCTTCTTTTG 59.613 45.833 0.00 0.00 0.00 2.44
622 628 4.561105 GGTGTCACGATCTCTCTTCTTTT 58.439 43.478 0.00 0.00 0.00 2.27
624 630 2.162608 CGGTGTCACGATCTCTCTTCTT 59.837 50.000 0.00 0.00 35.47 2.52
625 631 1.740585 CGGTGTCACGATCTCTCTTCT 59.259 52.381 0.00 0.00 35.47 2.85
626 632 1.469308 ACGGTGTCACGATCTCTCTTC 59.531 52.381 0.00 0.00 37.61 2.87
627 633 1.535833 ACGGTGTCACGATCTCTCTT 58.464 50.000 0.00 0.00 37.61 2.85
629 635 1.469308 AGAACGGTGTCACGATCTCTC 59.531 52.381 0.00 0.00 41.25 3.20
630 636 1.535833 AGAACGGTGTCACGATCTCT 58.464 50.000 0.00 0.00 41.25 3.10
631 637 1.986378 CAAGAACGGTGTCACGATCTC 59.014 52.381 0.00 0.00 43.72 2.75
632 638 1.340248 ACAAGAACGGTGTCACGATCT 59.660 47.619 0.00 0.02 45.93 2.75
633 639 1.719780 GACAAGAACGGTGTCACGATC 59.280 52.381 0.00 0.00 44.00 3.69
634 640 1.779569 GACAAGAACGGTGTCACGAT 58.220 50.000 0.00 0.00 44.00 3.73
635 641 0.593008 CGACAAGAACGGTGTCACGA 60.593 55.000 5.50 0.00 44.66 4.35
636 642 1.844003 CGACAAGAACGGTGTCACG 59.156 57.895 5.50 0.00 44.66 4.35
637 643 1.563173 GCGACAAGAACGGTGTCAC 59.437 57.895 5.50 0.00 44.66 3.67
638 644 1.593209 GGCGACAAGAACGGTGTCA 60.593 57.895 5.50 0.00 44.66 3.58
640 646 2.430382 ATCGGCGACAAGAACGGTGT 62.430 55.000 13.76 0.00 0.00 4.16
642 648 1.445582 GATCGGCGACAAGAACGGT 60.446 57.895 13.76 0.00 0.00 4.83
643 649 2.505498 CGATCGGCGACAAGAACGG 61.505 63.158 13.76 0.00 44.57 4.44
644 650 1.513373 TCGATCGGCGACAAGAACG 60.513 57.895 13.76 11.47 45.59 3.95
645 651 4.470876 TCGATCGGCGACAAGAAC 57.529 55.556 13.76 0.00 45.59 3.01
654 660 0.594028 TAACAGCGTCATCGATCGGC 60.594 55.000 16.41 10.28 39.71 5.54
655 661 1.268589 ACTAACAGCGTCATCGATCGG 60.269 52.381 16.41 0.00 39.71 4.18
657 663 1.518929 GCACTAACAGCGTCATCGATC 59.481 52.381 0.00 0.00 39.71 3.69
658 664 1.135139 AGCACTAACAGCGTCATCGAT 59.865 47.619 0.00 0.00 39.71 3.59
659 665 0.526211 AGCACTAACAGCGTCATCGA 59.474 50.000 0.00 0.00 39.71 3.59
661 667 1.714794 ACAGCACTAACAGCGTCATC 58.285 50.000 0.00 0.00 37.01 2.92
662 668 1.800586 CAACAGCACTAACAGCGTCAT 59.199 47.619 0.00 0.00 37.01 3.06
664 670 0.110644 GCAACAGCACTAACAGCGTC 60.111 55.000 0.00 0.00 37.01 5.19
665 671 0.813610 TGCAACAGCACTAACAGCGT 60.814 50.000 0.00 0.00 37.01 5.07
666 672 0.110509 CTGCAACAGCACTAACAGCG 60.111 55.000 0.00 0.00 37.01 5.18
667 673 1.196354 CTCTGCAACAGCACTAACAGC 59.804 52.381 0.00 0.00 33.99 4.40
668 674 1.802960 CCTCTGCAACAGCACTAACAG 59.197 52.381 0.00 0.00 33.99 3.16
669 675 1.140852 ACCTCTGCAACAGCACTAACA 59.859 47.619 0.00 0.00 33.99 2.41
670 676 1.532868 CACCTCTGCAACAGCACTAAC 59.467 52.381 0.00 0.00 33.99 2.34
671 677 1.543208 CCACCTCTGCAACAGCACTAA 60.543 52.381 0.00 0.00 33.99 2.24
673 679 1.228063 CCACCTCTGCAACAGCACT 60.228 57.895 0.00 0.00 33.99 4.40
674 680 1.103398 AACCACCTCTGCAACAGCAC 61.103 55.000 0.00 0.00 33.99 4.40
676 682 0.875059 GTAACCACCTCTGCAACAGC 59.125 55.000 0.00 0.00 0.00 4.40
681 687 1.369692 CACCGTAACCACCTCTGCA 59.630 57.895 0.00 0.00 0.00 4.41
682 688 1.375523 CCACCGTAACCACCTCTGC 60.376 63.158 0.00 0.00 0.00 4.26
683 689 1.375523 GCCACCGTAACCACCTCTG 60.376 63.158 0.00 0.00 0.00 3.35
684 690 2.590114 GGCCACCGTAACCACCTCT 61.590 63.158 0.00 0.00 0.00 3.69
685 691 2.046604 GGCCACCGTAACCACCTC 60.047 66.667 0.00 0.00 0.00 3.85
686 692 2.228480 ATGGCCACCGTAACCACCT 61.228 57.895 8.16 0.00 35.99 4.00
687 693 2.043980 CATGGCCACCGTAACCACC 61.044 63.158 8.16 0.00 35.99 4.61
688 694 2.043980 CCATGGCCACCGTAACCAC 61.044 63.158 8.16 0.00 35.99 4.16
689 695 2.353189 CCATGGCCACCGTAACCA 59.647 61.111 8.16 0.00 37.99 3.67
691 697 1.752694 ATGCCATGGCCACCGTAAC 60.753 57.895 33.44 3.62 41.09 2.50
693 699 2.124362 CATGCCATGGCCACCGTA 60.124 61.111 33.44 14.74 41.09 4.02
696 702 3.845259 CAGCATGCCATGGCCACC 61.845 66.667 33.44 20.18 41.09 4.61
697 703 3.072468 ACAGCATGCCATGGCCAC 61.072 61.111 33.44 21.79 42.53 5.01
698 704 3.071837 CACAGCATGCCATGGCCA 61.072 61.111 33.44 21.36 42.53 5.36
699 705 3.845259 CCACAGCATGCCATGGCC 61.845 66.667 33.44 18.48 42.53 5.36
700 706 3.072468 ACCACAGCATGCCATGGC 61.072 61.111 30.54 30.54 42.53 4.40
701 707 2.889617 CACCACAGCATGCCATGG 59.110 61.111 28.09 28.09 42.53 3.66
702 708 2.183300 GCACCACAGCATGCCATG 59.817 61.111 15.66 12.96 42.53 3.66
706 712 2.050350 ATCAGGCACCACAGCATGC 61.050 57.895 10.51 10.51 45.18 4.06
707 713 0.678684 TCATCAGGCACCACAGCATG 60.679 55.000 0.00 0.00 46.77 4.06
708 714 0.257905 ATCATCAGGCACCACAGCAT 59.742 50.000 0.00 0.00 35.83 3.79
738 5110 2.262915 CTCTGCGTCACCTCCACC 59.737 66.667 0.00 0.00 0.00 4.61
759 5140 0.179029 ACACCCCAAACCGAACTGAG 60.179 55.000 0.00 0.00 0.00 3.35
825 5206 0.332972 AAAGGAGAGGGGCCAACATC 59.667 55.000 4.39 0.00 0.00 3.06
826 5207 0.332972 GAAAGGAGAGGGGCCAACAT 59.667 55.000 4.39 0.00 0.00 2.71
828 5209 1.000771 GGAAAGGAGAGGGGCCAAC 60.001 63.158 4.39 0.00 0.00 3.77
829 5210 1.151587 AGGAAAGGAGAGGGGCCAA 60.152 57.895 4.39 0.00 0.00 4.52
830 5211 1.925455 CAGGAAAGGAGAGGGGCCA 60.925 63.158 4.39 0.00 0.00 5.36
831 5212 2.684499 CCAGGAAAGGAGAGGGGCC 61.684 68.421 0.00 0.00 0.00 5.80
832 5213 3.002371 CCAGGAAAGGAGAGGGGC 58.998 66.667 0.00 0.00 0.00 5.80
835 5216 0.182299 GATGGCCAGGAAAGGAGAGG 59.818 60.000 13.05 0.00 0.00 3.69
836 5217 1.211456 AGATGGCCAGGAAAGGAGAG 58.789 55.000 13.05 0.00 0.00 3.20
837 5218 1.561542 GAAGATGGCCAGGAAAGGAGA 59.438 52.381 13.05 0.00 0.00 3.71
838 5219 1.409381 GGAAGATGGCCAGGAAAGGAG 60.409 57.143 13.05 0.00 0.00 3.69
839 5220 0.625849 GGAAGATGGCCAGGAAAGGA 59.374 55.000 13.05 0.00 0.00 3.36
840 5221 0.627986 AGGAAGATGGCCAGGAAAGG 59.372 55.000 13.05 0.00 0.00 3.11
841 5222 1.760192 CAGGAAGATGGCCAGGAAAG 58.240 55.000 13.05 0.00 0.00 2.62
842 5223 0.323725 GCAGGAAGATGGCCAGGAAA 60.324 55.000 13.05 0.00 0.00 3.13
843 5224 1.210204 AGCAGGAAGATGGCCAGGAA 61.210 55.000 13.05 0.00 0.00 3.36
844 5225 1.617536 AGCAGGAAGATGGCCAGGA 60.618 57.895 13.05 0.00 0.00 3.86
845 5226 1.153005 GAGCAGGAAGATGGCCAGG 60.153 63.158 13.05 0.00 0.00 4.45
846 5227 1.153005 GGAGCAGGAAGATGGCCAG 60.153 63.158 13.05 0.00 0.00 4.85
847 5228 1.617536 AGGAGCAGGAAGATGGCCA 60.618 57.895 8.56 8.56 0.00 5.36
848 5229 1.148048 GAGGAGCAGGAAGATGGCC 59.852 63.158 0.00 0.00 0.00 5.36
849 5230 0.106521 GAGAGGAGCAGGAAGATGGC 59.893 60.000 0.00 0.00 0.00 4.40
850 5231 1.688197 GAGAGAGGAGCAGGAAGATGG 59.312 57.143 0.00 0.00 0.00 3.51
851 5232 2.624838 GAGAGAGAGGAGCAGGAAGATG 59.375 54.545 0.00 0.00 0.00 2.90
852 5233 2.515429 AGAGAGAGAGGAGCAGGAAGAT 59.485 50.000 0.00 0.00 0.00 2.40
853 5234 1.922447 AGAGAGAGAGGAGCAGGAAGA 59.078 52.381 0.00 0.00 0.00 2.87
854 5235 2.092212 AGAGAGAGAGAGGAGCAGGAAG 60.092 54.545 0.00 0.00 0.00 3.46
855 5236 1.922447 AGAGAGAGAGAGGAGCAGGAA 59.078 52.381 0.00 0.00 0.00 3.36
856 5237 1.490490 GAGAGAGAGAGAGGAGCAGGA 59.510 57.143 0.00 0.00 0.00 3.86
903 5284 1.396996 CAACCTTGATAGGGAAACGCG 59.603 52.381 3.53 3.53 46.58 6.01
914 5395 1.912043 AGCTCTAGCACCAACCTTGAT 59.088 47.619 4.54 0.00 45.16 2.57
925 5465 2.127869 CCCGGCTACAGCTCTAGCA 61.128 63.158 20.72 0.00 45.16 3.49
1017 5567 0.107410 AGAGTTTGTTGCCGGTGACA 60.107 50.000 1.90 5.53 0.00 3.58
1018 5568 0.586802 GAGAGTTTGTTGCCGGTGAC 59.413 55.000 1.90 2.45 0.00 3.67
1033 5583 1.137872 CGAGTTGAGGGGAATGGAGAG 59.862 57.143 0.00 0.00 0.00 3.20
1034 5584 1.195115 CGAGTTGAGGGGAATGGAGA 58.805 55.000 0.00 0.00 0.00 3.71
1059 5609 0.179108 CGAAATGGAGGGGAGACGAC 60.179 60.000 0.00 0.00 0.00 4.34
1093 5769 4.309950 ACCGACTGCCCGTTCACC 62.310 66.667 0.00 0.00 0.00 4.02
1159 5835 1.823610 ACCTTCTTGGCGAGGTAGTAC 59.176 52.381 0.97 0.00 40.22 2.73
1261 5937 3.107601 TCGATGGATGAAGGAAGGAAGT 58.892 45.455 0.00 0.00 0.00 3.01
1262 5938 3.386078 TCTCGATGGATGAAGGAAGGAAG 59.614 47.826 0.00 0.00 0.00 3.46
1264 5940 3.032265 TCTCGATGGATGAAGGAAGGA 57.968 47.619 0.00 0.00 0.00 3.36
1290 5970 0.678048 GCATTGTGGAGGGAGGTGTC 60.678 60.000 0.00 0.00 0.00 3.67
1293 5973 0.907704 TACGCATTGTGGAGGGAGGT 60.908 55.000 1.77 0.00 0.00 3.85
1294 5974 0.462047 GTACGCATTGTGGAGGGAGG 60.462 60.000 1.77 0.00 0.00 4.30
1318 6059 3.328382 TCCAGGTCCAATTAGTTCACG 57.672 47.619 0.00 0.00 0.00 4.35
1332 6073 0.314935 CTGCATGCGTTTTTCCAGGT 59.685 50.000 14.09 0.00 0.00 4.00
1334 6075 1.973138 CTCTGCATGCGTTTTTCCAG 58.027 50.000 14.09 1.87 0.00 3.86
1617 6363 1.829456 GGCTGGGTTTTTGCCAGTT 59.171 52.632 0.00 0.00 45.46 3.16
1618 6364 3.549730 GGCTGGGTTTTTGCCAGT 58.450 55.556 0.00 0.00 45.46 4.00
1626 6372 2.524148 GCTGGGTTGGCTGGGTTT 60.524 61.111 0.00 0.00 0.00 3.27
1650 6435 1.732417 CGGAGTAGTAGGGGGCGTTC 61.732 65.000 0.00 0.00 0.00 3.95
1673 6458 0.677842 AATACGTACCGGGGATGAGC 59.322 55.000 6.32 0.00 0.00 4.26
1724 6553 1.308069 ATCGTGCATGCAGTCCAACC 61.308 55.000 23.41 6.37 0.00 3.77
1773 6603 3.385755 TGCATCACTAGCAAGCTATCTCA 59.614 43.478 1.74 0.00 39.39 3.27
1809 9251 5.125417 GCCAGCTCAAAAGGTATGTCAATTA 59.875 40.000 0.00 0.00 0.00 1.40
1813 9255 2.040278 AGCCAGCTCAAAAGGTATGTCA 59.960 45.455 0.00 0.00 0.00 3.58
1875 9451 6.748333 TTAGATTAGGCTAATCATGCATGC 57.252 37.500 36.06 11.82 45.41 4.06
1934 10002 6.434340 TCTGCTCATATCATACGGATAACACT 59.566 38.462 0.00 0.00 41.66 3.55
2215 10371 0.233332 GAGAATATGGTCAAGCGCGC 59.767 55.000 26.66 26.66 0.00 6.86
2343 10505 0.750850 TTCTCGTATAGGGTGCTGCC 59.249 55.000 0.00 0.00 0.00 4.85
2775 10945 6.015180 ACTGTGCACATCTTGTTATTCCAAAT 60.015 34.615 22.00 0.00 0.00 2.32
2831 11006 4.488126 TTCACATCTGTAAAACAGCTGC 57.512 40.909 15.27 0.00 43.87 5.25
2885 11069 3.128242 CGGTGTAGTCTTTGGATACGACT 59.872 47.826 0.00 0.00 40.74 4.18
2889 11073 4.445452 TGACGGTGTAGTCTTTGGATAC 57.555 45.455 0.00 0.00 41.47 2.24
2949 11133 3.963687 TAGCCGCGAGACCGAGACA 62.964 63.158 8.23 0.00 37.82 3.41
2950 11134 3.170810 CTAGCCGCGAGACCGAGAC 62.171 68.421 8.23 0.00 37.82 3.36
2954 11138 3.456431 CTGACTAGCCGCGAGACCG 62.456 68.421 8.23 0.00 39.16 4.79
3025 11209 6.109359 ACATCAGAAGGTTTTTATCTCGAGG 58.891 40.000 13.56 0.00 0.00 4.63
3065 11249 3.658705 TCCTTTACCTTGTACACCCCATT 59.341 43.478 0.00 0.00 0.00 3.16
3092 11277 2.193127 CACCCCCTTGATACACCTACA 58.807 52.381 0.00 0.00 0.00 2.74
3171 11356 1.843851 CCATTGTAACCCTAGGCCTCA 59.156 52.381 9.68 0.00 0.00 3.86
3189 11374 1.291033 ACCATAGCTGACTAGGACCCA 59.709 52.381 0.00 0.00 31.72 4.51
3261 11446 0.750911 CTGCCAAGATGGAAGGAGGC 60.751 60.000 0.00 0.00 39.67 4.70
3262 11447 3.491208 CTGCCAAGATGGAAGGAGG 57.509 57.895 0.00 0.00 39.67 4.30
3278 11463 1.452651 CTACCCTGCATGTGGCCTG 60.453 63.158 3.32 0.00 43.89 4.85
3279 11464 3.001514 CTACCCTGCATGTGGCCT 58.998 61.111 3.32 0.00 43.89 5.19
3280 11465 2.830370 GCTACCCTGCATGTGGCC 60.830 66.667 12.14 0.00 43.89 5.36
3281 11466 3.204827 CGCTACCCTGCATGTGGC 61.205 66.667 12.90 12.90 45.13 5.01
3282 11467 2.514592 CCGCTACCCTGCATGTGG 60.515 66.667 0.00 0.00 0.00 4.17
3283 11468 3.204827 GCCGCTACCCTGCATGTG 61.205 66.667 0.00 0.00 0.00 3.21
3284 11469 4.489771 GGCCGCTACCCTGCATGT 62.490 66.667 0.00 0.00 0.00 3.21
3285 11470 3.704231 AAGGCCGCTACCCTGCATG 62.704 63.158 0.00 0.00 31.73 4.06
3286 11471 3.411517 AAGGCCGCTACCCTGCAT 61.412 61.111 0.00 0.00 31.73 3.96
3287 11472 4.408821 CAAGGCCGCTACCCTGCA 62.409 66.667 0.00 0.00 31.73 4.41
3288 11473 3.406595 ATCAAGGCCGCTACCCTGC 62.407 63.158 0.00 0.00 31.73 4.85
3289 11474 1.227674 GATCAAGGCCGCTACCCTG 60.228 63.158 0.00 0.00 31.73 4.45
3290 11475 2.444256 GGATCAAGGCCGCTACCCT 61.444 63.158 0.00 0.00 0.00 4.34
3291 11476 1.984288 AAGGATCAAGGCCGCTACCC 61.984 60.000 0.00 0.00 0.00 3.69
3292 11477 0.756903 TAAGGATCAAGGCCGCTACC 59.243 55.000 0.00 0.00 0.00 3.18
3293 11478 1.874320 GCTAAGGATCAAGGCCGCTAC 60.874 57.143 0.00 0.00 0.00 3.58
3294 11479 0.393077 GCTAAGGATCAAGGCCGCTA 59.607 55.000 0.00 0.00 0.00 4.26
3295 11480 1.147153 GCTAAGGATCAAGGCCGCT 59.853 57.895 0.00 0.00 0.00 5.52
3296 11481 2.247437 CGCTAAGGATCAAGGCCGC 61.247 63.158 0.00 0.00 0.00 6.53
3297 11482 2.247437 GCGCTAAGGATCAAGGCCG 61.247 63.158 0.00 0.00 0.00 6.13
3298 11483 2.247437 CGCGCTAAGGATCAAGGCC 61.247 63.158 5.56 0.00 0.00 5.19
3299 11484 2.247437 CCGCGCTAAGGATCAAGGC 61.247 63.158 5.56 0.00 0.00 4.35
3300 11485 2.247437 GCCGCGCTAAGGATCAAGG 61.247 63.158 5.56 0.00 0.00 3.61
3301 11486 1.227380 AGCCGCGCTAAGGATCAAG 60.227 57.895 5.56 0.00 36.99 3.02
3302 11487 1.521457 CAGCCGCGCTAAGGATCAA 60.521 57.895 5.56 0.00 36.40 2.57
3303 11488 1.748329 ATCAGCCGCGCTAAGGATCA 61.748 55.000 5.56 0.00 36.40 2.92
3353 11553 3.801594 CGTGTTGTGGCTTATTTTGCTTT 59.198 39.130 0.00 0.00 0.00 3.51
3374 11574 7.640852 TCTCTAGATCGGACTAATTCTTTTCG 58.359 38.462 0.00 0.00 0.00 3.46
3422 11622 4.827692 ACTACATTTCGTTACCATGAGCA 58.172 39.130 0.00 0.00 0.00 4.26
3504 11704 9.273016 CATATATCAATAGGAGTCAAAACGGTT 57.727 33.333 0.00 0.00 0.00 4.44
3506 11706 8.833231 ACATATATCAATAGGAGTCAAAACGG 57.167 34.615 0.00 0.00 0.00 4.44
3527 11727 5.514500 AAAGGAGGAAGCCACTAAACATA 57.486 39.130 0.00 0.00 0.00 2.29
3705 11923 8.205131 TCCGGTTTAAAAAGCTTAGACATATC 57.795 34.615 0.00 0.00 34.41 1.63
3726 11944 0.682209 TACGAGTCCCTCCTTTCCGG 60.682 60.000 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.