Multiple sequence alignment - TraesCS7D01G061800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G061800 chr7D 100.000 4197 0 0 1 4197 33466912 33462716 0.000000e+00 7751.0
1 TraesCS7D01G061800 chr7D 90.476 63 6 0 845 907 587855199 587855261 2.690000e-12 84.2
2 TraesCS7D01G061800 chr7A 96.598 3439 63 16 1 3430 33987045 33983652 0.000000e+00 5653.0
3 TraesCS7D01G061800 chr7A 96.420 2514 61 13 1 2496 33973638 33971136 0.000000e+00 4117.0
4 TraesCS7D01G061800 chr7A 91.134 1331 94 11 1772 3089 33736957 33735638 0.000000e+00 1783.0
5 TraesCS7D01G061800 chr7A 94.326 705 36 2 2383 3087 33664160 33663460 0.000000e+00 1077.0
6 TraesCS7D01G061800 chr7A 97.522 565 12 2 3520 4083 33983360 33982797 0.000000e+00 965.0
7 TraesCS7D01G061800 chr7A 94.599 611 29 4 1779 2388 33666623 33666016 0.000000e+00 942.0
8 TraesCS7D01G061800 chr7A 84.575 765 62 23 929 1673 33679291 33678563 0.000000e+00 708.0
9 TraesCS7D01G061800 chr7A 86.307 482 32 12 1313 1769 33738574 33738102 1.050000e-135 494.0
10 TraesCS7D01G061800 chr7A 90.429 303 24 4 1 299 33759205 33758904 1.090000e-105 394.0
11 TraesCS7D01G061800 chr7A 83.103 290 24 7 1049 1318 33740954 33740670 1.510000e-59 241.0
12 TraesCS7D01G061800 chr7A 86.631 187 22 3 3898 4083 732178520 732178704 1.980000e-48 204.0
13 TraesCS7D01G061800 chr7A 97.391 115 3 0 4083 4197 33981015 33980901 3.310000e-46 196.0
14 TraesCS7D01G061800 chr7A 98.276 58 1 0 666 723 33720047 33719990 7.420000e-18 102.0
15 TraesCS7D01G061800 chr4A 89.267 1677 127 28 1772 3416 692165446 692167101 0.000000e+00 2050.0
16 TraesCS7D01G061800 chr4A 89.088 1677 130 30 1772 3416 692088286 692089941 0.000000e+00 2034.0
17 TraesCS7D01G061800 chr4A 91.736 1331 82 15 1772 3089 692261100 692262415 0.000000e+00 1823.0
18 TraesCS7D01G061800 chr4A 87.944 788 58 13 1 763 692163432 692164207 0.000000e+00 894.0
19 TraesCS7D01G061800 chr4A 87.817 788 59 13 1 763 692259088 692259863 0.000000e+00 889.0
20 TraesCS7D01G061800 chr4A 90.303 660 57 6 2 659 692082807 692083461 0.000000e+00 857.0
21 TraesCS7D01G061800 chr4A 86.802 788 73 17 1 764 692085449 692086229 0.000000e+00 850.0
22 TraesCS7D01G061800 chr4A 86.047 688 46 20 1119 1769 692260115 692260789 0.000000e+00 693.0
23 TraesCS7D01G061800 chr4A 85.901 688 47 19 1119 1769 692164461 692165135 0.000000e+00 688.0
24 TraesCS7D01G061800 chr4A 85.591 694 47 21 1113 1769 692087298 692087975 0.000000e+00 678.0
25 TraesCS7D01G061800 chr4A 93.243 148 6 2 929 1075 692164317 692164461 9.140000e-52 215.0
26 TraesCS7D01G061800 chr4A 92.568 148 6 3 929 1075 692259972 692260115 1.530000e-49 207.0
27 TraesCS7D01G061800 chr4A 78.409 176 36 2 47 221 692264453 692264627 3.430000e-21 113.0
28 TraesCS7D01G061800 chr4B 86.969 353 44 2 3731 4083 533720527 533720877 3.040000e-106 396.0
29 TraesCS7D01G061800 chr6D 88.294 299 34 1 3771 4069 80777277 80777574 1.430000e-94 357.0
30 TraesCS7D01G061800 chr3A 88.841 233 24 2 3851 4083 59465780 59466010 6.870000e-73 285.0
31 TraesCS7D01G061800 chr3A 87.500 128 15 1 3731 3858 59465485 59465611 3.380000e-31 147.0
32 TraesCS7D01G061800 chr3B 81.340 209 28 4 3772 3975 232176093 232176295 4.340000e-35 159.0
33 TraesCS7D01G061800 chr3B 91.667 60 4 1 856 915 41313786 41313728 9.670000e-12 82.4
34 TraesCS7D01G061800 chr3B 92.857 56 2 2 856 911 580114692 580114639 3.480000e-11 80.5
35 TraesCS7D01G061800 chr2D 72.074 376 87 17 308 677 454844753 454845116 3.450000e-16 97.1
36 TraesCS7D01G061800 chr2D 94.444 54 3 0 856 909 633777826 633777879 2.690000e-12 84.2
37 TraesCS7D01G061800 chr6B 96.078 51 2 0 856 906 9150749 9150799 2.690000e-12 84.2
38 TraesCS7D01G061800 chr2A 94.340 53 3 0 856 908 776499489 776499437 9.670000e-12 82.4
39 TraesCS7D01G061800 chr4D 94.231 52 3 0 856 907 505305706 505305655 3.480000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G061800 chr7D 33462716 33466912 4196 True 7751.000000 7751 100.000000 1 4197 1 chr7D.!!$R1 4196
1 TraesCS7D01G061800 chr7A 33971136 33973638 2502 True 4117.000000 4117 96.420000 1 2496 1 chr7A.!!$R4 2495
2 TraesCS7D01G061800 chr7A 33980901 33987045 6144 True 2271.333333 5653 97.170333 1 4197 3 chr7A.!!$R7 4196
3 TraesCS7D01G061800 chr7A 33663460 33666623 3163 True 1009.500000 1077 94.462500 1779 3087 2 chr7A.!!$R5 1308
4 TraesCS7D01G061800 chr7A 33735638 33740954 5316 True 839.333333 1783 86.848000 1049 3089 3 chr7A.!!$R6 2040
5 TraesCS7D01G061800 chr7A 33678563 33679291 728 True 708.000000 708 84.575000 929 1673 1 chr7A.!!$R1 744
6 TraesCS7D01G061800 chr4A 692082807 692089941 7134 False 1104.750000 2034 87.946000 1 3416 4 chr4A.!!$F1 3415
7 TraesCS7D01G061800 chr4A 692163432 692167101 3669 False 961.750000 2050 89.088750 1 3416 4 chr4A.!!$F2 3415
8 TraesCS7D01G061800 chr4A 692259088 692264627 5539 False 745.000000 1823 87.315400 1 3089 5 chr4A.!!$F3 3088
9 TraesCS7D01G061800 chr3A 59465485 59466010 525 False 216.000000 285 88.170500 3731 4083 2 chr3A.!!$F1 352

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 4401 0.926220 AGAAAGCCCATTAGCCCCCT 60.926 55.000 0.00 0.00 0.00 4.79 F
1321 6938 1.227205 GAGGATGAGGTGCTCTGCG 60.227 63.158 0.00 0.00 41.66 5.18 F
2111 8907 3.235157 TGTTTTCATATTGCCTGCAGC 57.765 42.857 8.66 4.57 44.14 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 8907 1.731433 CCATCTTGGCAATGGAGGCG 61.731 60.000 13.48 0.0 45.51 5.52 R
2260 9056 3.275999 AGTTGCGTAGTTGGTTGTTTCT 58.724 40.909 0.00 0.0 0.00 2.52 R
3480 12193 0.036732 TGGTGGCAATGGTGAGAGAC 59.963 55.000 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
428 430 8.397906 CAAGACGAAATTTAGCAATCTAATGGA 58.602 33.333 0.00 0.00 34.96 3.41
603 3261 2.895372 GACGGGCTTATGCGGTGG 60.895 66.667 1.47 0.00 40.82 4.61
788 3459 6.417191 TTTTTAGAGTATCCGCACATTGAC 57.583 37.500 0.00 0.00 33.66 3.18
992 4401 0.926220 AGAAAGCCCATTAGCCCCCT 60.926 55.000 0.00 0.00 0.00 4.79
1028 4437 1.815840 GAAAGCCCAGTAGCCGCTC 60.816 63.158 0.00 0.00 30.92 5.03
1076 4485 2.202756 GCGAGGAAGTAGCACCCG 60.203 66.667 0.00 0.00 0.00 5.28
1321 6938 1.227205 GAGGATGAGGTGCTCTGCG 60.227 63.158 0.00 0.00 41.66 5.18
1461 7105 3.899980 GTTCTTGGGGATACGGGTATACT 59.100 47.826 2.25 0.00 37.60 2.12
1546 7190 3.810896 GGTTTCCGCCGACCATGC 61.811 66.667 0.00 0.00 35.95 4.06
1762 7413 7.060421 AGTTTTGAACCCACAGATTCTAGAAA 58.940 34.615 9.71 0.00 0.00 2.52
2111 8907 3.235157 TGTTTTCATATTGCCTGCAGC 57.765 42.857 8.66 4.57 44.14 5.25
2260 9056 5.233957 CATGTTTGCATTCCGAGATGTAA 57.766 39.130 0.00 0.00 31.99 2.41
2916 11585 7.167468 GTGATTCGAAAATTCCCGGATATTTTG 59.833 37.037 22.88 16.81 34.91 2.44
3231 11929 2.470999 GCAAACATGTGCCACGTTTTAG 59.529 45.455 0.00 0.00 38.66 1.85
3366 12074 4.631773 CCACTGGCATGACCTCTG 57.368 61.111 0.00 0.00 40.22 3.35
3417 12130 3.402681 ATCACCGCCCCTCCACAG 61.403 66.667 0.00 0.00 0.00 3.66
3422 12135 4.436998 CGCCCCTCCACAGTCGAC 62.437 72.222 7.70 7.70 0.00 4.20
3423 12136 4.083862 GCCCCTCCACAGTCGACC 62.084 72.222 13.01 0.00 0.00 4.79
3430 12143 1.666872 CCACAGTCGACCGTTTCCC 60.667 63.158 13.01 0.00 0.00 3.97
3431 12144 1.666872 CACAGTCGACCGTTTCCCC 60.667 63.158 13.01 0.00 0.00 4.81
3432 12145 1.835712 ACAGTCGACCGTTTCCCCT 60.836 57.895 13.01 0.00 0.00 4.79
3433 12146 1.370064 CAGTCGACCGTTTCCCCTT 59.630 57.895 13.01 0.00 0.00 3.95
3434 12147 0.669625 CAGTCGACCGTTTCCCCTTC 60.670 60.000 13.01 0.00 0.00 3.46
3435 12148 1.375140 GTCGACCGTTTCCCCTTCC 60.375 63.158 3.51 0.00 0.00 3.46
3436 12149 1.837947 TCGACCGTTTCCCCTTCCA 60.838 57.895 0.00 0.00 0.00 3.53
3437 12150 1.196104 TCGACCGTTTCCCCTTCCAT 61.196 55.000 0.00 0.00 0.00 3.41
3438 12151 0.743345 CGACCGTTTCCCCTTCCATC 60.743 60.000 0.00 0.00 0.00 3.51
3439 12152 0.393944 GACCGTTTCCCCTTCCATCC 60.394 60.000 0.00 0.00 0.00 3.51
3440 12153 1.137594 ACCGTTTCCCCTTCCATCCA 61.138 55.000 0.00 0.00 0.00 3.41
3441 12154 0.679960 CCGTTTCCCCTTCCATCCAC 60.680 60.000 0.00 0.00 0.00 4.02
3442 12155 0.679960 CGTTTCCCCTTCCATCCACC 60.680 60.000 0.00 0.00 0.00 4.61
3443 12156 0.407918 GTTTCCCCTTCCATCCACCA 59.592 55.000 0.00 0.00 0.00 4.17
3444 12157 1.007118 GTTTCCCCTTCCATCCACCAT 59.993 52.381 0.00 0.00 0.00 3.55
3445 12158 0.926293 TTCCCCTTCCATCCACCATC 59.074 55.000 0.00 0.00 0.00 3.51
3446 12159 0.253583 TCCCCTTCCATCCACCATCA 60.254 55.000 0.00 0.00 0.00 3.07
3447 12160 0.106519 CCCCTTCCATCCACCATCAC 60.107 60.000 0.00 0.00 0.00 3.06
3448 12161 0.106519 CCCTTCCATCCACCATCACC 60.107 60.000 0.00 0.00 0.00 4.02
3449 12162 0.625316 CCTTCCATCCACCATCACCA 59.375 55.000 0.00 0.00 0.00 4.17
3450 12163 1.409241 CCTTCCATCCACCATCACCAG 60.409 57.143 0.00 0.00 0.00 4.00
3451 12164 1.283029 CTTCCATCCACCATCACCAGT 59.717 52.381 0.00 0.00 0.00 4.00
3452 12165 0.911769 TCCATCCACCATCACCAGTC 59.088 55.000 0.00 0.00 0.00 3.51
3453 12166 0.914644 CCATCCACCATCACCAGTCT 59.085 55.000 0.00 0.00 0.00 3.24
3454 12167 1.283029 CCATCCACCATCACCAGTCTT 59.717 52.381 0.00 0.00 0.00 3.01
3455 12168 2.291153 CCATCCACCATCACCAGTCTTT 60.291 50.000 0.00 0.00 0.00 2.52
3456 12169 3.054434 CCATCCACCATCACCAGTCTTTA 60.054 47.826 0.00 0.00 0.00 1.85
3457 12170 3.695830 TCCACCATCACCAGTCTTTAC 57.304 47.619 0.00 0.00 0.00 2.01
3458 12171 2.304761 TCCACCATCACCAGTCTTTACC 59.695 50.000 0.00 0.00 0.00 2.85
3459 12172 2.618045 CCACCATCACCAGTCTTTACCC 60.618 54.545 0.00 0.00 0.00 3.69
3460 12173 1.633945 ACCATCACCAGTCTTTACCCC 59.366 52.381 0.00 0.00 0.00 4.95
3461 12174 1.064685 CCATCACCAGTCTTTACCCCC 60.065 57.143 0.00 0.00 0.00 5.40
3487 12200 3.592070 CGGAGGAAGCGTCTCTCA 58.408 61.111 15.81 0.00 0.00 3.27
3488 12201 1.137825 CGGAGGAAGCGTCTCTCAC 59.862 63.158 15.81 7.81 0.00 3.51
3489 12202 1.513622 GGAGGAAGCGTCTCTCACC 59.486 63.158 15.81 0.00 0.00 4.02
3490 12203 1.251527 GGAGGAAGCGTCTCTCACCA 61.252 60.000 15.81 0.00 0.00 4.17
3491 12204 0.820871 GAGGAAGCGTCTCTCACCAT 59.179 55.000 11.31 0.00 0.00 3.55
3492 12205 1.205893 GAGGAAGCGTCTCTCACCATT 59.794 52.381 11.31 0.00 0.00 3.16
3493 12206 1.066573 AGGAAGCGTCTCTCACCATTG 60.067 52.381 0.00 0.00 0.00 2.82
3494 12207 0.723981 GAAGCGTCTCTCACCATTGC 59.276 55.000 0.00 0.00 0.00 3.56
3495 12208 0.674895 AAGCGTCTCTCACCATTGCC 60.675 55.000 0.00 0.00 0.00 4.52
3496 12209 1.375908 GCGTCTCTCACCATTGCCA 60.376 57.895 0.00 0.00 0.00 4.92
3497 12210 1.639298 GCGTCTCTCACCATTGCCAC 61.639 60.000 0.00 0.00 0.00 5.01
3498 12211 1.021390 CGTCTCTCACCATTGCCACC 61.021 60.000 0.00 0.00 0.00 4.61
3499 12212 0.036732 GTCTCTCACCATTGCCACCA 59.963 55.000 0.00 0.00 0.00 4.17
3500 12213 0.036732 TCTCTCACCATTGCCACCAC 59.963 55.000 0.00 0.00 0.00 4.16
3501 12214 0.962356 CTCTCACCATTGCCACCACC 60.962 60.000 0.00 0.00 0.00 4.61
3502 12215 1.228521 CTCACCATTGCCACCACCA 60.229 57.895 0.00 0.00 0.00 4.17
3503 12216 1.526575 CTCACCATTGCCACCACCAC 61.527 60.000 0.00 0.00 0.00 4.16
3504 12217 1.831726 CACCATTGCCACCACCACA 60.832 57.895 0.00 0.00 0.00 4.17
3505 12218 1.531365 ACCATTGCCACCACCACAG 60.531 57.895 0.00 0.00 0.00 3.66
3506 12219 2.277591 CCATTGCCACCACCACAGG 61.278 63.158 0.00 0.00 0.00 4.00
3593 12508 0.039437 GTGGAGCTCTGTTTCGACGA 60.039 55.000 14.64 0.00 0.00 4.20
3602 12517 2.056577 CTGTTTCGACGACACCCTTAC 58.943 52.381 11.37 0.00 0.00 2.34
3609 12524 0.807496 ACGACACCCTTACTCGTAGC 59.193 55.000 0.00 0.00 38.83 3.58
4081 16008 2.932614 AGAAGATGCAGATTCGTTTCGG 59.067 45.455 7.75 0.00 0.00 4.30
4089 16016 0.377203 GATTCGTTTCGGGCCATGTC 59.623 55.000 4.39 0.00 0.00 3.06
4130 16057 0.465705 TCTCTTGGAGCATAAGGCCG 59.534 55.000 0.00 0.00 46.50 6.13
4186 16113 1.517257 CTCGCACCGCTCGATTCTT 60.517 57.895 0.00 0.00 35.25 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
336 338 5.045215 TGCGAAACGGATTCTATAACGAAT 58.955 37.500 0.00 0.00 35.79 3.34
428 430 3.458487 ACTAGGGACAAGAACAAAGTGGT 59.542 43.478 0.00 0.00 0.00 4.16
603 3261 7.801716 TTAGTGGGATTGTATATTGCAGTTC 57.198 36.000 0.00 0.00 0.00 3.01
772 3443 2.760650 TCTCAGTCAATGTGCGGATACT 59.239 45.455 0.00 0.00 0.00 2.12
776 3447 2.143122 GTTTCTCAGTCAATGTGCGGA 58.857 47.619 0.00 0.00 0.00 5.54
992 4401 0.766131 TCTACTTTTGAACCCGGGCA 59.234 50.000 24.08 8.96 0.00 5.36
1028 4437 0.110328 CGCTGCTGACTCTTTGCAAG 60.110 55.000 0.00 0.00 36.22 4.01
1096 4505 0.385751 GCGATCTCCCTCGATGAACA 59.614 55.000 0.00 0.00 41.12 3.18
1321 6938 4.729918 CCTGTCCCACAGCCAGGC 62.730 72.222 1.84 1.84 44.63 4.85
1461 7105 2.749621 GTTCCCGTCCTCGTAGTAGAAA 59.250 50.000 0.00 0.00 35.01 2.52
1546 7190 1.078214 TTGATCTCTTGGCGCAGGG 60.078 57.895 10.83 0.00 0.00 4.45
1777 8571 0.955178 TTGCCACCGGTACAAACATG 59.045 50.000 17.39 0.00 0.00 3.21
2111 8907 1.731433 CCATCTTGGCAATGGAGGCG 61.731 60.000 13.48 0.00 45.51 5.52
2260 9056 3.275999 AGTTGCGTAGTTGGTTGTTTCT 58.724 40.909 0.00 0.00 0.00 2.52
3231 11929 4.286707 ACTGGGGAAAATACTAAATGGCC 58.713 43.478 0.00 0.00 0.00 5.36
3366 12074 1.145598 GGGCTTAACGAGGGGTAGC 59.854 63.158 0.00 0.00 0.00 3.58
3417 12130 1.375140 GGAAGGGGAAACGGTCGAC 60.375 63.158 7.13 7.13 0.00 4.20
3422 12135 0.679960 GTGGATGGAAGGGGAAACGG 60.680 60.000 0.00 0.00 0.00 4.44
3423 12136 0.679960 GGTGGATGGAAGGGGAAACG 60.680 60.000 0.00 0.00 0.00 3.60
3430 12143 0.625316 TGGTGATGGTGGATGGAAGG 59.375 55.000 0.00 0.00 0.00 3.46
3431 12144 1.283029 ACTGGTGATGGTGGATGGAAG 59.717 52.381 0.00 0.00 0.00 3.46
3432 12145 1.281867 GACTGGTGATGGTGGATGGAA 59.718 52.381 0.00 0.00 0.00 3.53
3433 12146 0.911769 GACTGGTGATGGTGGATGGA 59.088 55.000 0.00 0.00 0.00 3.41
3434 12147 0.914644 AGACTGGTGATGGTGGATGG 59.085 55.000 0.00 0.00 0.00 3.51
3435 12148 2.795231 AAGACTGGTGATGGTGGATG 57.205 50.000 0.00 0.00 0.00 3.51
3436 12149 3.054361 GGTAAAGACTGGTGATGGTGGAT 60.054 47.826 0.00 0.00 0.00 3.41
3437 12150 2.304761 GGTAAAGACTGGTGATGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
3438 12151 2.618045 GGGTAAAGACTGGTGATGGTGG 60.618 54.545 0.00 0.00 0.00 4.61
3439 12152 2.618045 GGGGTAAAGACTGGTGATGGTG 60.618 54.545 0.00 0.00 0.00 4.17
3440 12153 1.633945 GGGGTAAAGACTGGTGATGGT 59.366 52.381 0.00 0.00 0.00 3.55
3441 12154 1.064685 GGGGGTAAAGACTGGTGATGG 60.065 57.143 0.00 0.00 0.00 3.51
3442 12155 2.420058 GGGGGTAAAGACTGGTGATG 57.580 55.000 0.00 0.00 0.00 3.07
3467 12180 3.839432 GAGACGCTTCCTCCGGGG 61.839 72.222 0.00 0.00 0.00 5.73
3468 12181 2.756283 AGAGACGCTTCCTCCGGG 60.756 66.667 0.00 0.00 0.00 5.73
3469 12182 2.046864 TGAGAGACGCTTCCTCCGG 61.047 63.158 0.00 0.00 0.00 5.14
3470 12183 1.137825 GTGAGAGACGCTTCCTCCG 59.862 63.158 6.34 0.00 0.00 4.63
3471 12184 1.251527 TGGTGAGAGACGCTTCCTCC 61.252 60.000 6.34 0.00 0.00 4.30
3472 12185 0.820871 ATGGTGAGAGACGCTTCCTC 59.179 55.000 2.90 2.90 0.00 3.71
3473 12186 1.066573 CAATGGTGAGAGACGCTTCCT 60.067 52.381 0.00 0.00 0.00 3.36
3474 12187 1.363744 CAATGGTGAGAGACGCTTCC 58.636 55.000 0.00 0.00 0.00 3.46
3475 12188 0.723981 GCAATGGTGAGAGACGCTTC 59.276 55.000 0.00 0.00 0.00 3.86
3476 12189 0.674895 GGCAATGGTGAGAGACGCTT 60.675 55.000 0.00 0.00 0.00 4.68
3477 12190 1.078848 GGCAATGGTGAGAGACGCT 60.079 57.895 0.00 0.00 0.00 5.07
3478 12191 1.375908 TGGCAATGGTGAGAGACGC 60.376 57.895 0.00 0.00 0.00 5.19
3479 12192 1.021390 GGTGGCAATGGTGAGAGACG 61.021 60.000 0.00 0.00 0.00 4.18
3480 12193 0.036732 TGGTGGCAATGGTGAGAGAC 59.963 55.000 0.00 0.00 0.00 3.36
3481 12194 0.036732 GTGGTGGCAATGGTGAGAGA 59.963 55.000 0.00 0.00 0.00 3.10
3482 12195 0.962356 GGTGGTGGCAATGGTGAGAG 60.962 60.000 0.00 0.00 0.00 3.20
3483 12196 1.074775 GGTGGTGGCAATGGTGAGA 59.925 57.895 0.00 0.00 0.00 3.27
3484 12197 1.228521 TGGTGGTGGCAATGGTGAG 60.229 57.895 0.00 0.00 0.00 3.51
3485 12198 1.530419 GTGGTGGTGGCAATGGTGA 60.530 57.895 0.00 0.00 0.00 4.02
3486 12199 1.808531 CTGTGGTGGTGGCAATGGTG 61.809 60.000 0.00 0.00 0.00 4.17
3487 12200 1.531365 CTGTGGTGGTGGCAATGGT 60.531 57.895 0.00 0.00 0.00 3.55
3488 12201 2.277591 CCTGTGGTGGTGGCAATGG 61.278 63.158 0.00 0.00 0.00 3.16
3489 12202 2.934570 GCCTGTGGTGGTGGCAATG 61.935 63.158 0.00 0.00 45.46 2.82
3490 12203 2.601367 GCCTGTGGTGGTGGCAAT 60.601 61.111 0.00 0.00 45.46 3.56
3508 12221 2.670401 GCAAAGCTATGCGTATCCAC 57.330 50.000 0.00 0.00 36.45 4.02
3516 12229 1.348594 GACGACCGCAAAGCTATGC 59.651 57.895 0.00 0.00 42.94 3.14
3517 12230 1.631072 CGACGACCGCAAAGCTATG 59.369 57.895 0.00 0.00 0.00 2.23
3518 12231 1.518572 CCGACGACCGCAAAGCTAT 60.519 57.895 0.00 0.00 36.84 2.97
3540 12455 2.264794 CACCCTACCCTGACGCAC 59.735 66.667 0.00 0.00 0.00 5.34
3543 12458 1.827399 AAGCACACCCTACCCTGACG 61.827 60.000 0.00 0.00 0.00 4.35
3593 12508 0.531200 GCAGCTACGAGTAAGGGTGT 59.469 55.000 0.00 0.00 0.00 4.16
3609 12524 2.401766 GGATGTGGCCTCGTTGCAG 61.402 63.158 3.32 0.00 0.00 4.41
3632 12547 3.515286 CCTTGGCCTGCGAGCATG 61.515 66.667 3.32 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.