Multiple sequence alignment - TraesCS7D01G061300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G061300 chr7D 100.000 3643 0 0 1 3643 33151171 33147529 0.000000e+00 6728.0
1 TraesCS7D01G061300 chr4A 93.847 2259 112 15 807 3053 693495899 693493656 0.000000e+00 3376.0
2 TraesCS7D01G061300 chr4A 81.494 308 39 11 478 768 693496208 693495902 1.690000e-58 237.0
3 TraesCS7D01G061300 chr4A 90.625 96 9 0 254 349 693496366 693496271 1.060000e-25 128.0
4 TraesCS7D01G061300 chr4A 94.000 50 3 0 3078 3127 693492479 693492430 3.900000e-10 76.8
5 TraesCS7D01G061300 chr7A 94.079 2111 90 18 1155 3238 33483194 33481092 0.000000e+00 3173.0
6 TraesCS7D01G061300 chr7A 90.000 350 34 1 807 1156 33483624 33483276 5.550000e-123 451.0
7 TraesCS7D01G061300 chr7A 86.553 409 19 17 3234 3623 33481037 33480646 5.630000e-113 418.0
8 TraesCS7D01G061300 chr7A 86.339 366 45 5 874 1237 540056446 540056808 9.480000e-106 394.0
9 TraesCS7D01G061300 chr7A 86.027 365 48 3 874 1237 540103444 540103806 4.410000e-104 388.0
10 TraesCS7D01G061300 chr7A 84.564 149 12 7 724 865 540049033 540049177 1.760000e-28 137.0
11 TraesCS7D01G061300 chr7A 89.796 49 4 1 385 432 33484003 33483955 1.090000e-05 62.1
12 TraesCS7D01G061300 chr2B 82.396 409 56 10 638 1043 373498317 373498712 3.480000e-90 342.0
13 TraesCS7D01G061300 chr2B 79.147 211 27 9 2914 3114 538234597 538234800 2.950000e-26 130.0
14 TraesCS7D01G061300 chr5A 88.306 248 26 3 997 1242 631087981 631087735 9.890000e-76 294.0
15 TraesCS7D01G061300 chr5A 84.000 250 37 3 1088 1335 607962506 607962754 1.690000e-58 237.0
16 TraesCS7D01G061300 chrUn 84.400 250 37 2 1088 1335 26776548 26776797 1.010000e-60 244.0
17 TraesCS7D01G061300 chrUn 80.120 166 20 6 3270 3426 28336829 28336990 1.070000e-20 111.0
18 TraesCS7D01G061300 chr5B 81.349 252 42 4 1088 1335 100048591 100048841 2.220000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G061300 chr7D 33147529 33151171 3642 True 6728.000 6728 100.0000 1 3643 1 chr7D.!!$R1 3642
1 TraesCS7D01G061300 chr4A 693492430 693496366 3936 True 954.450 3376 89.9915 254 3127 4 chr4A.!!$R1 2873
2 TraesCS7D01G061300 chr7A 33480646 33484003 3357 True 1026.025 3173 90.1070 385 3623 4 chr7A.!!$R1 3238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 239 0.032416 ATGGGTACTAGTGAGCGGGT 60.032 55.0 5.39 0.00 0.00 5.28 F
361 362 0.108585 ATGCTCACCGGTCTGTTTGT 59.891 50.0 2.59 0.00 0.00 2.83 F
461 469 0.110104 AATAGCTGATCTGCTGCCCC 59.890 55.0 30.80 1.44 43.87 5.80 F
478 486 0.399233 CCCCTCCTACTTGCCTAGCT 60.399 60.0 0.00 0.00 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1853 0.250901 GGTTCATGCTGTGGTGGTCT 60.251 55.000 0.0 0.0 0.0 3.85 R
1972 2083 0.839946 AGATCCTGGGTTGAATCCGG 59.160 55.000 0.0 0.0 0.0 5.14 R
2246 2357 2.047274 ACACCAGACATTCCGGCG 60.047 61.111 0.0 0.0 0.0 6.46 R
3044 3182 9.944663 ACAACTGCAACGTAATAATAATAATGG 57.055 29.630 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.436998 GGCGGTCCTCGGTGAGTG 62.437 72.222 0.00 0.00 39.69 3.51
49 50 3.371063 GCGGTCCTCGGTGAGTGA 61.371 66.667 0.00 0.00 39.69 3.41
50 51 2.711922 GCGGTCCTCGGTGAGTGAT 61.712 63.158 0.00 0.00 39.69 3.06
51 52 1.433879 CGGTCCTCGGTGAGTGATC 59.566 63.158 0.00 0.00 34.75 2.92
52 53 1.032657 CGGTCCTCGGTGAGTGATCT 61.033 60.000 0.00 0.00 34.75 2.75
53 54 1.746171 CGGTCCTCGGTGAGTGATCTA 60.746 57.143 0.00 0.00 34.75 1.98
54 55 1.950909 GGTCCTCGGTGAGTGATCTAG 59.049 57.143 0.00 0.00 0.00 2.43
55 56 1.950909 GTCCTCGGTGAGTGATCTAGG 59.049 57.143 0.00 0.00 0.00 3.02
56 57 1.133761 TCCTCGGTGAGTGATCTAGGG 60.134 57.143 0.00 0.00 0.00 3.53
57 58 1.410365 CCTCGGTGAGTGATCTAGGGT 60.410 57.143 0.00 0.00 0.00 4.34
58 59 2.379972 CTCGGTGAGTGATCTAGGGTT 58.620 52.381 0.00 0.00 0.00 4.11
59 60 2.761208 CTCGGTGAGTGATCTAGGGTTT 59.239 50.000 0.00 0.00 0.00 3.27
60 61 3.952323 CTCGGTGAGTGATCTAGGGTTTA 59.048 47.826 0.00 0.00 0.00 2.01
61 62 3.952323 TCGGTGAGTGATCTAGGGTTTAG 59.048 47.826 0.00 0.00 0.00 1.85
62 63 3.491104 CGGTGAGTGATCTAGGGTTTAGC 60.491 52.174 0.00 0.00 0.00 3.09
63 64 3.491104 GGTGAGTGATCTAGGGTTTAGCG 60.491 52.174 0.00 0.00 0.00 4.26
64 65 2.100916 TGAGTGATCTAGGGTTTAGCGC 59.899 50.000 0.00 0.00 0.00 5.92
65 66 2.362717 GAGTGATCTAGGGTTTAGCGCT 59.637 50.000 17.26 17.26 43.25 5.92
66 67 2.766828 AGTGATCTAGGGTTTAGCGCTT 59.233 45.455 18.68 0.00 40.99 4.68
67 68 3.124560 GTGATCTAGGGTTTAGCGCTTC 58.875 50.000 18.68 6.83 40.99 3.86
68 69 2.102588 TGATCTAGGGTTTAGCGCTTCC 59.897 50.000 18.68 16.10 40.99 3.46
69 70 0.828677 TCTAGGGTTTAGCGCTTCCC 59.171 55.000 26.80 26.80 40.99 3.97
70 71 0.179054 CTAGGGTTTAGCGCTTCCCC 60.179 60.000 28.87 26.53 40.70 4.81
71 72 1.923909 AGGGTTTAGCGCTTCCCCT 60.924 57.895 28.87 27.86 40.94 4.79
72 73 0.619543 AGGGTTTAGCGCTTCCCCTA 60.620 55.000 29.48 5.37 43.94 3.53
73 74 0.253894 GGGTTTAGCGCTTCCCCTAA 59.746 55.000 24.97 8.56 34.32 2.69
74 75 1.376543 GGTTTAGCGCTTCCCCTAAC 58.623 55.000 18.68 10.53 0.00 2.34
75 76 1.065636 GGTTTAGCGCTTCCCCTAACT 60.066 52.381 18.68 0.00 0.00 2.24
76 77 2.007608 GTTTAGCGCTTCCCCTAACTG 58.992 52.381 18.68 0.00 0.00 3.16
77 78 0.539986 TTAGCGCTTCCCCTAACTGG 59.460 55.000 18.68 0.00 0.00 4.00
87 88 3.154589 CCTAACTGGGCTCGTTTCC 57.845 57.895 0.00 0.00 0.00 3.13
88 89 0.613777 CCTAACTGGGCTCGTTTCCT 59.386 55.000 0.00 0.00 0.00 3.36
89 90 1.405661 CCTAACTGGGCTCGTTTCCTC 60.406 57.143 0.00 0.00 0.00 3.71
90 91 1.550976 CTAACTGGGCTCGTTTCCTCT 59.449 52.381 0.00 0.00 0.00 3.69
91 92 0.035458 AACTGGGCTCGTTTCCTCTG 59.965 55.000 0.00 0.00 0.00 3.35
92 93 1.122019 ACTGGGCTCGTTTCCTCTGT 61.122 55.000 0.00 0.00 0.00 3.41
93 94 0.035458 CTGGGCTCGTTTCCTCTGTT 59.965 55.000 0.00 0.00 0.00 3.16
94 95 0.250295 TGGGCTCGTTTCCTCTGTTG 60.250 55.000 0.00 0.00 0.00 3.33
95 96 1.578206 GGGCTCGTTTCCTCTGTTGC 61.578 60.000 0.00 0.00 0.00 4.17
96 97 0.603975 GGCTCGTTTCCTCTGTTGCT 60.604 55.000 0.00 0.00 0.00 3.91
97 98 1.337823 GGCTCGTTTCCTCTGTTGCTA 60.338 52.381 0.00 0.00 0.00 3.49
98 99 2.413837 GCTCGTTTCCTCTGTTGCTAA 58.586 47.619 0.00 0.00 0.00 3.09
99 100 3.003480 GCTCGTTTCCTCTGTTGCTAAT 58.997 45.455 0.00 0.00 0.00 1.73
100 101 3.437049 GCTCGTTTCCTCTGTTGCTAATT 59.563 43.478 0.00 0.00 0.00 1.40
101 102 4.083271 GCTCGTTTCCTCTGTTGCTAATTT 60.083 41.667 0.00 0.00 0.00 1.82
102 103 5.121768 GCTCGTTTCCTCTGTTGCTAATTTA 59.878 40.000 0.00 0.00 0.00 1.40
103 104 6.673316 GCTCGTTTCCTCTGTTGCTAATTTAG 60.673 42.308 0.00 0.00 0.00 1.85
115 116 4.179499 GCTAATTTAGCGTCCTCGTTTC 57.821 45.455 12.39 0.00 42.62 2.78
116 117 3.001026 GCTAATTTAGCGTCCTCGTTTCC 59.999 47.826 12.39 0.00 42.62 3.13
117 118 2.754946 ATTTAGCGTCCTCGTTTCCA 57.245 45.000 0.00 0.00 39.49 3.53
118 119 2.529780 TTTAGCGTCCTCGTTTCCAA 57.470 45.000 0.00 0.00 39.49 3.53
119 120 2.074547 TTAGCGTCCTCGTTTCCAAG 57.925 50.000 0.00 0.00 39.49 3.61
120 121 0.963962 TAGCGTCCTCGTTTCCAAGT 59.036 50.000 0.00 0.00 39.49 3.16
121 122 0.319641 AGCGTCCTCGTTTCCAAGTC 60.320 55.000 0.00 0.00 39.49 3.01
122 123 0.599204 GCGTCCTCGTTTCCAAGTCA 60.599 55.000 0.00 0.00 39.49 3.41
123 124 1.137513 CGTCCTCGTTTCCAAGTCAC 58.862 55.000 0.00 0.00 0.00 3.67
124 125 1.137513 GTCCTCGTTTCCAAGTCACG 58.862 55.000 0.00 0.00 35.18 4.35
125 126 0.032952 TCCTCGTTTCCAAGTCACGG 59.967 55.000 0.00 0.00 34.61 4.94
126 127 1.566018 CCTCGTTTCCAAGTCACGGC 61.566 60.000 0.00 0.00 34.61 5.68
127 128 0.600255 CTCGTTTCCAAGTCACGGCT 60.600 55.000 0.00 0.00 34.61 5.52
128 129 0.878523 TCGTTTCCAAGTCACGGCTG 60.879 55.000 0.00 0.00 34.61 4.85
129 130 1.157870 CGTTTCCAAGTCACGGCTGT 61.158 55.000 0.00 0.00 0.00 4.40
139 140 2.031919 ACGGCTGTGAATTCCGCA 59.968 55.556 0.00 1.43 46.49 5.69
164 165 3.615709 GCGGCTGGCCCTGTTTTT 61.616 61.111 0.00 0.00 34.80 1.94
165 166 2.339712 CGGCTGGCCCTGTTTTTG 59.660 61.111 0.00 0.00 0.00 2.44
166 167 2.031012 GGCTGGCCCTGTTTTTGC 59.969 61.111 0.00 0.00 0.00 3.68
167 168 2.031012 GCTGGCCCTGTTTTTGCC 59.969 61.111 0.00 0.00 45.56 4.52
168 169 2.743060 CTGGCCCTGTTTTTGCCC 59.257 61.111 0.00 0.00 44.72 5.36
169 170 2.846754 TGGCCCTGTTTTTGCCCC 60.847 61.111 0.00 0.00 44.72 5.80
170 171 3.636231 GGCCCTGTTTTTGCCCCC 61.636 66.667 0.00 0.00 39.30 5.40
186 187 1.839424 CCCCCTTTTGCAGTTAGAGG 58.161 55.000 0.00 0.00 0.00 3.69
187 188 1.616994 CCCCCTTTTGCAGTTAGAGGG 60.617 57.143 5.65 5.65 45.42 4.30
188 189 1.177401 CCCTTTTGCAGTTAGAGGGC 58.823 55.000 0.00 0.00 40.53 5.19
189 190 0.804989 CCTTTTGCAGTTAGAGGGCG 59.195 55.000 0.00 0.00 0.00 6.13
190 191 0.169009 CTTTTGCAGTTAGAGGGCGC 59.831 55.000 0.00 0.00 0.00 6.53
191 192 0.536233 TTTTGCAGTTAGAGGGCGCA 60.536 50.000 10.83 0.00 0.00 6.09
192 193 1.234615 TTTGCAGTTAGAGGGCGCAC 61.235 55.000 10.83 5.15 31.10 5.34
193 194 2.047274 GCAGTTAGAGGGCGCACA 60.047 61.111 14.57 0.00 0.00 4.57
194 195 2.103042 GCAGTTAGAGGGCGCACAG 61.103 63.158 14.57 0.00 0.00 3.66
195 196 1.591703 CAGTTAGAGGGCGCACAGA 59.408 57.895 14.57 0.00 0.00 3.41
196 197 0.459237 CAGTTAGAGGGCGCACAGAG 60.459 60.000 14.57 0.00 0.00 3.35
197 198 0.900647 AGTTAGAGGGCGCACAGAGT 60.901 55.000 14.57 0.00 0.00 3.24
198 199 0.737715 GTTAGAGGGCGCACAGAGTG 60.738 60.000 14.57 0.00 36.51 3.51
199 200 1.888436 TTAGAGGGCGCACAGAGTGG 61.888 60.000 14.57 0.00 33.64 4.00
200 201 2.781431 TAGAGGGCGCACAGAGTGGA 62.781 60.000 14.57 0.00 33.64 4.02
201 202 3.240134 GAGGGCGCACAGAGTGGAA 62.240 63.158 14.57 0.00 33.64 3.53
202 203 2.743928 GGGCGCACAGAGTGGAAG 60.744 66.667 10.83 0.00 33.64 3.46
203 204 2.031163 GGCGCACAGAGTGGAAGT 59.969 61.111 10.83 0.00 33.64 3.01
204 205 2.320587 GGCGCACAGAGTGGAAGTG 61.321 63.158 10.83 0.00 33.64 3.16
208 209 2.242113 CACAGAGTGGAAGTGCTGC 58.758 57.895 0.00 0.00 31.74 5.25
209 210 0.250209 CACAGAGTGGAAGTGCTGCT 60.250 55.000 0.00 0.00 31.74 4.24
210 211 0.471617 ACAGAGTGGAAGTGCTGCTT 59.528 50.000 0.00 0.00 40.76 3.91
211 212 1.694150 ACAGAGTGGAAGTGCTGCTTA 59.306 47.619 0.00 0.00 37.59 3.09
212 213 2.072298 CAGAGTGGAAGTGCTGCTTAC 58.928 52.381 0.00 0.00 37.59 2.34
213 214 1.974236 AGAGTGGAAGTGCTGCTTACT 59.026 47.619 0.00 0.00 38.85 2.24
214 215 2.072298 GAGTGGAAGTGCTGCTTACTG 58.928 52.381 0.00 0.00 38.85 2.74
215 216 1.417890 AGTGGAAGTGCTGCTTACTGT 59.582 47.619 0.00 0.00 38.85 3.55
216 217 1.532868 GTGGAAGTGCTGCTTACTGTG 59.467 52.381 0.00 0.00 38.85 3.66
217 218 1.160137 GGAAGTGCTGCTTACTGTGG 58.840 55.000 0.00 0.00 37.59 4.17
218 219 1.160137 GAAGTGCTGCTTACTGTGGG 58.840 55.000 0.00 0.00 37.59 4.61
219 220 0.764890 AAGTGCTGCTTACTGTGGGA 59.235 50.000 0.00 0.00 35.27 4.37
220 221 0.987294 AGTGCTGCTTACTGTGGGAT 59.013 50.000 0.00 0.00 0.00 3.85
221 222 1.089920 GTGCTGCTTACTGTGGGATG 58.910 55.000 0.00 0.00 0.00 3.51
222 223 0.035152 TGCTGCTTACTGTGGGATGG 60.035 55.000 0.00 0.00 0.00 3.51
223 224 0.749454 GCTGCTTACTGTGGGATGGG 60.749 60.000 0.00 0.00 0.00 4.00
224 225 0.620556 CTGCTTACTGTGGGATGGGT 59.379 55.000 0.00 0.00 0.00 4.51
225 226 1.837439 CTGCTTACTGTGGGATGGGTA 59.163 52.381 0.00 0.00 0.00 3.69
226 227 1.557832 TGCTTACTGTGGGATGGGTAC 59.442 52.381 0.00 0.00 0.00 3.34
227 228 1.838077 GCTTACTGTGGGATGGGTACT 59.162 52.381 0.00 0.00 0.00 2.73
228 229 3.036091 GCTTACTGTGGGATGGGTACTA 58.964 50.000 0.00 0.00 0.00 1.82
229 230 3.069729 GCTTACTGTGGGATGGGTACTAG 59.930 52.174 0.00 0.00 0.00 2.57
230 231 2.942604 ACTGTGGGATGGGTACTAGT 57.057 50.000 0.00 0.00 0.00 2.57
231 232 2.467880 ACTGTGGGATGGGTACTAGTG 58.532 52.381 5.39 0.00 0.00 2.74
232 233 2.043939 ACTGTGGGATGGGTACTAGTGA 59.956 50.000 5.39 0.00 0.00 3.41
233 234 2.695666 CTGTGGGATGGGTACTAGTGAG 59.304 54.545 5.39 0.00 0.00 3.51
234 235 1.413077 GTGGGATGGGTACTAGTGAGC 59.587 57.143 5.39 0.00 0.00 4.26
235 236 0.674534 GGGATGGGTACTAGTGAGCG 59.325 60.000 5.39 0.00 0.00 5.03
236 237 0.674534 GGATGGGTACTAGTGAGCGG 59.325 60.000 5.39 0.00 0.00 5.52
237 238 0.674534 GATGGGTACTAGTGAGCGGG 59.325 60.000 5.39 0.00 0.00 6.13
238 239 0.032416 ATGGGTACTAGTGAGCGGGT 60.032 55.000 5.39 0.00 0.00 5.28
239 240 0.968901 TGGGTACTAGTGAGCGGGTG 60.969 60.000 5.39 0.00 0.00 4.61
240 241 1.141234 GGTACTAGTGAGCGGGTGC 59.859 63.158 5.39 0.00 43.24 5.01
241 242 1.601419 GGTACTAGTGAGCGGGTGCA 61.601 60.000 5.39 0.00 46.23 4.57
242 243 0.460311 GTACTAGTGAGCGGGTGCAT 59.540 55.000 5.39 0.00 46.23 3.96
243 244 0.459899 TACTAGTGAGCGGGTGCATG 59.540 55.000 5.39 0.00 46.23 4.06
244 245 1.219124 CTAGTGAGCGGGTGCATGT 59.781 57.895 0.00 0.00 46.23 3.21
245 246 1.079197 TAGTGAGCGGGTGCATGTG 60.079 57.895 0.00 0.00 46.23 3.21
246 247 2.520465 TAGTGAGCGGGTGCATGTGG 62.520 60.000 0.00 0.00 46.23 4.17
247 248 3.952508 TGAGCGGGTGCATGTGGT 61.953 61.111 0.00 0.00 46.23 4.16
248 249 3.434319 GAGCGGGTGCATGTGGTG 61.434 66.667 0.00 0.00 46.23 4.17
249 250 4.269523 AGCGGGTGCATGTGGTGT 62.270 61.111 0.00 0.00 46.23 4.16
250 251 2.359354 GCGGGTGCATGTGGTGTA 60.359 61.111 0.00 0.00 42.15 2.90
251 252 1.969064 GCGGGTGCATGTGGTGTAA 60.969 57.895 0.00 0.00 42.15 2.41
252 253 1.873165 CGGGTGCATGTGGTGTAAC 59.127 57.895 0.00 0.00 0.00 2.50
267 268 2.300437 GTGTAACTCTCCACAGCTTCCT 59.700 50.000 0.00 0.00 0.00 3.36
274 275 0.898320 TCCACAGCTTCCTAGTGAGC 59.102 55.000 2.84 6.50 35.33 4.26
278 279 1.305381 AGCTTCCTAGTGAGCGGGT 60.305 57.895 8.43 0.00 0.00 5.28
281 282 1.888436 CTTCCTAGTGAGCGGGTGCA 61.888 60.000 0.00 0.00 46.23 4.57
288 289 3.127533 GAGCGGGTGCATGTGGAC 61.128 66.667 0.00 0.00 46.23 4.02
311 312 6.785488 CAGTGTACTGCTAGTTTCAATTGA 57.215 37.500 3.38 3.38 37.15 2.57
316 317 4.144297 ACTGCTAGTTTCAATTGAAGGCA 58.856 39.130 24.39 24.39 35.21 4.75
349 350 4.024218 GCAGTTGGATTCTATGATGCTCAC 60.024 45.833 0.00 0.00 0.00 3.51
350 351 4.514441 CAGTTGGATTCTATGATGCTCACC 59.486 45.833 0.00 0.00 0.00 4.02
351 352 3.391506 TGGATTCTATGATGCTCACCG 57.608 47.619 0.00 0.00 0.00 4.94
352 353 2.037641 TGGATTCTATGATGCTCACCGG 59.962 50.000 0.00 0.00 0.00 5.28
353 354 2.037772 GGATTCTATGATGCTCACCGGT 59.962 50.000 0.00 0.00 0.00 5.28
354 355 2.890808 TTCTATGATGCTCACCGGTC 57.109 50.000 2.59 0.00 0.00 4.79
355 356 2.073252 TCTATGATGCTCACCGGTCT 57.927 50.000 2.59 0.00 0.00 3.85
356 357 1.683385 TCTATGATGCTCACCGGTCTG 59.317 52.381 2.59 0.52 0.00 3.51
357 358 1.410517 CTATGATGCTCACCGGTCTGT 59.589 52.381 2.59 0.00 0.00 3.41
358 359 0.615331 ATGATGCTCACCGGTCTGTT 59.385 50.000 2.59 0.00 0.00 3.16
359 360 0.396435 TGATGCTCACCGGTCTGTTT 59.604 50.000 2.59 0.00 0.00 2.83
360 361 0.798776 GATGCTCACCGGTCTGTTTG 59.201 55.000 2.59 0.00 0.00 2.93
361 362 0.108585 ATGCTCACCGGTCTGTTTGT 59.891 50.000 2.59 0.00 0.00 2.83
362 363 0.813610 TGCTCACCGGTCTGTTTGTG 60.814 55.000 2.59 0.00 0.00 3.33
363 364 0.531974 GCTCACCGGTCTGTTTGTGA 60.532 55.000 2.59 0.00 36.40 3.58
364 365 1.948104 CTCACCGGTCTGTTTGTGAA 58.052 50.000 2.59 0.00 37.29 3.18
365 366 1.867233 CTCACCGGTCTGTTTGTGAAG 59.133 52.381 2.59 0.00 37.29 3.02
366 367 0.307760 CACCGGTCTGTTTGTGAAGC 59.692 55.000 2.59 0.00 0.00 3.86
367 368 0.180406 ACCGGTCTGTTTGTGAAGCT 59.820 50.000 0.00 0.00 0.00 3.74
368 369 1.308998 CCGGTCTGTTTGTGAAGCTT 58.691 50.000 0.00 0.00 0.00 3.74
369 370 1.676006 CCGGTCTGTTTGTGAAGCTTT 59.324 47.619 0.00 0.00 0.00 3.51
370 371 2.541588 CCGGTCTGTTTGTGAAGCTTTG 60.542 50.000 0.00 0.00 0.00 2.77
371 372 2.541588 CGGTCTGTTTGTGAAGCTTTGG 60.542 50.000 0.00 0.00 0.00 3.28
372 373 2.427095 GGTCTGTTTGTGAAGCTTTGGT 59.573 45.455 0.00 0.00 0.00 3.67
373 374 3.119137 GGTCTGTTTGTGAAGCTTTGGTT 60.119 43.478 0.00 0.00 0.00 3.67
374 375 4.494484 GTCTGTTTGTGAAGCTTTGGTTT 58.506 39.130 0.00 0.00 0.00 3.27
375 376 4.327087 GTCTGTTTGTGAAGCTTTGGTTTG 59.673 41.667 0.00 0.00 0.00 2.93
376 377 3.594134 TGTTTGTGAAGCTTTGGTTTGG 58.406 40.909 0.00 0.00 0.00 3.28
377 378 2.307934 TTGTGAAGCTTTGGTTTGGC 57.692 45.000 0.00 0.00 0.00 4.52
378 379 1.484038 TGTGAAGCTTTGGTTTGGCT 58.516 45.000 0.00 0.00 37.99 4.75
379 380 2.660572 TGTGAAGCTTTGGTTTGGCTA 58.339 42.857 0.00 0.00 35.06 3.93
380 381 3.230134 TGTGAAGCTTTGGTTTGGCTAT 58.770 40.909 0.00 0.00 35.06 2.97
381 382 3.640967 TGTGAAGCTTTGGTTTGGCTATT 59.359 39.130 0.00 0.00 35.06 1.73
382 383 4.100808 TGTGAAGCTTTGGTTTGGCTATTT 59.899 37.500 0.00 0.00 35.06 1.40
383 384 4.448732 GTGAAGCTTTGGTTTGGCTATTTG 59.551 41.667 0.00 0.00 35.06 2.32
419 420 7.851228 TCAGAGTCATGTCCATAACTGTTTAT 58.149 34.615 0.00 0.00 0.00 1.40
420 421 7.765819 TCAGAGTCATGTCCATAACTGTTTATG 59.234 37.037 0.00 1.24 43.03 1.90
423 424 6.830324 AGTCATGTCCATAACTGTTTATGCAT 59.170 34.615 3.79 3.79 42.33 3.96
426 427 5.504853 TGTCCATAACTGTTTATGCATCCA 58.495 37.500 0.19 0.00 42.33 3.41
428 429 6.606796 TGTCCATAACTGTTTATGCATCCAAT 59.393 34.615 0.19 0.00 42.33 3.16
429 430 6.919662 GTCCATAACTGTTTATGCATCCAATG 59.080 38.462 0.19 0.41 42.33 2.82
430 431 6.606796 TCCATAACTGTTTATGCATCCAATGT 59.393 34.615 0.19 0.00 42.33 2.71
433 441 9.153721 CATAACTGTTTATGCATCCAATGTTTT 57.846 29.630 0.19 0.00 38.55 2.43
441 449 4.630111 TGCATCCAATGTTTTGAAAGGAC 58.370 39.130 0.00 0.00 34.60 3.85
446 454 7.063780 GCATCCAATGTTTTGAAAGGACAATAG 59.936 37.037 0.00 0.00 34.60 1.73
449 457 6.366877 CCAATGTTTTGAAAGGACAATAGCTG 59.633 38.462 0.00 0.00 34.60 4.24
450 458 6.899393 ATGTTTTGAAAGGACAATAGCTGA 57.101 33.333 0.00 0.00 0.00 4.26
451 459 6.899393 TGTTTTGAAAGGACAATAGCTGAT 57.101 33.333 0.00 0.00 0.00 2.90
452 460 6.913170 TGTTTTGAAAGGACAATAGCTGATC 58.087 36.000 0.00 0.00 0.00 2.92
453 461 6.716628 TGTTTTGAAAGGACAATAGCTGATCT 59.283 34.615 0.00 0.00 0.00 2.75
454 462 6.748333 TTTGAAAGGACAATAGCTGATCTG 57.252 37.500 0.00 0.00 0.00 2.90
456 464 4.080695 TGAAAGGACAATAGCTGATCTGCT 60.081 41.667 27.34 27.34 46.11 4.24
457 465 3.472283 AGGACAATAGCTGATCTGCTG 57.528 47.619 30.80 20.07 43.87 4.41
458 466 1.872313 GGACAATAGCTGATCTGCTGC 59.128 52.381 30.80 16.78 43.87 5.25
459 467 1.872313 GACAATAGCTGATCTGCTGCC 59.128 52.381 30.80 14.54 43.87 4.85
460 468 1.236628 CAATAGCTGATCTGCTGCCC 58.763 55.000 30.80 2.12 43.87 5.36
461 469 0.110104 AATAGCTGATCTGCTGCCCC 59.890 55.000 30.80 1.44 43.87 5.80
462 470 1.776975 ATAGCTGATCTGCTGCCCCC 61.777 60.000 30.80 0.76 43.87 5.40
463 471 2.903871 TAGCTGATCTGCTGCCCCCT 62.904 60.000 30.80 10.66 43.87 4.79
464 472 2.509916 CTGATCTGCTGCCCCCTC 59.490 66.667 0.00 0.00 0.00 4.30
465 473 3.092511 TGATCTGCTGCCCCCTCC 61.093 66.667 0.00 0.00 0.00 4.30
466 474 2.771762 GATCTGCTGCCCCCTCCT 60.772 66.667 0.00 0.00 0.00 3.69
467 475 1.460305 GATCTGCTGCCCCCTCCTA 60.460 63.158 0.00 0.00 0.00 2.94
468 476 1.763546 GATCTGCTGCCCCCTCCTAC 61.764 65.000 0.00 0.00 0.00 3.18
469 477 2.263099 ATCTGCTGCCCCCTCCTACT 62.263 60.000 0.00 0.00 0.00 2.57
470 478 1.997874 CTGCTGCCCCCTCCTACTT 60.998 63.158 0.00 0.00 0.00 2.24
471 479 2.262774 CTGCTGCCCCCTCCTACTTG 62.263 65.000 0.00 0.00 0.00 3.16
472 480 2.592308 CTGCCCCCTCCTACTTGC 59.408 66.667 0.00 0.00 0.00 4.01
473 481 3.015145 TGCCCCCTCCTACTTGCC 61.015 66.667 0.00 0.00 0.00 4.52
474 482 2.692741 GCCCCCTCCTACTTGCCT 60.693 66.667 0.00 0.00 0.00 4.75
475 483 1.384082 GCCCCCTCCTACTTGCCTA 60.384 63.158 0.00 0.00 0.00 3.93
476 484 1.411651 GCCCCCTCCTACTTGCCTAG 61.412 65.000 0.00 0.00 0.00 3.02
477 485 1.411651 CCCCCTCCTACTTGCCTAGC 61.412 65.000 0.00 0.00 0.00 3.42
478 486 0.399233 CCCCTCCTACTTGCCTAGCT 60.399 60.000 0.00 0.00 0.00 3.32
479 487 1.133136 CCCCTCCTACTTGCCTAGCTA 60.133 57.143 0.00 0.00 0.00 3.32
480 488 2.243810 CCCTCCTACTTGCCTAGCTAG 58.756 57.143 14.20 14.20 37.42 3.42
481 489 2.158445 CCCTCCTACTTGCCTAGCTAGA 60.158 54.545 22.70 0.00 35.20 2.43
482 490 3.153919 CCTCCTACTTGCCTAGCTAGAG 58.846 54.545 22.70 13.74 35.20 2.43
483 491 3.181438 CCTCCTACTTGCCTAGCTAGAGA 60.181 52.174 22.70 4.95 35.20 3.10
484 492 4.508405 CCTCCTACTTGCCTAGCTAGAGAT 60.508 50.000 22.70 5.40 35.20 2.75
485 493 4.402829 TCCTACTTGCCTAGCTAGAGATG 58.597 47.826 22.70 11.72 35.20 2.90
486 494 4.104897 TCCTACTTGCCTAGCTAGAGATGA 59.895 45.833 22.70 8.11 35.20 2.92
487 495 4.458989 CCTACTTGCCTAGCTAGAGATGAG 59.541 50.000 22.70 13.48 35.20 2.90
493 501 6.381498 TGCCTAGCTAGAGATGAGTACTAT 57.619 41.667 22.70 0.00 0.00 2.12
497 505 9.403583 GCCTAGCTAGAGATGAGTACTATTATT 57.596 37.037 22.70 0.00 0.00 1.40
514 522 8.693542 ACTATTATTTGAAATTGTTCAGCTGC 57.306 30.769 9.47 0.00 44.49 5.25
529 537 0.521291 GCTGCGAAACTATGTGGCAA 59.479 50.000 0.00 0.00 32.59 4.52
533 541 2.621055 TGCGAAACTATGTGGCAAGTTT 59.379 40.909 13.97 13.97 45.99 2.66
534 542 2.979813 GCGAAACTATGTGGCAAGTTTG 59.020 45.455 17.85 11.98 43.97 2.93
538 546 3.508845 ACTATGTGGCAAGTTTGGTCT 57.491 42.857 0.00 0.00 0.00 3.85
542 550 1.228124 TGGCAAGTTTGGTCTCCGG 60.228 57.895 0.00 0.00 0.00 5.14
545 553 1.758592 CAAGTTTGGTCTCCGGGGA 59.241 57.895 0.00 0.00 0.00 4.81
560 569 1.203050 CGGGGATTTGGAGGCCATATT 60.203 52.381 5.01 0.00 31.53 1.28
582 591 1.353694 AGGCTCTGGTTCTGCATTTCT 59.646 47.619 0.00 0.00 0.00 2.52
616 625 6.647067 AGAAACTGAATCTGGAGTTAAAGTCG 59.353 38.462 0.00 0.00 32.03 4.18
628 637 7.162761 TGGAGTTAAAGTCGGTGAATGAATAA 58.837 34.615 0.00 0.00 0.00 1.40
672 697 5.620206 TGATTGACTTGTTGCCTTCTCTTA 58.380 37.500 0.00 0.00 0.00 2.10
688 713 7.201767 GCCTTCTCTTATGCATTGAGTAAACAT 60.202 37.037 21.14 0.00 0.00 2.71
693 718 3.913548 TGCATTGAGTAAACATGCGTT 57.086 38.095 0.00 0.00 40.79 4.84
701 726 4.513692 TGAGTAAACATGCGTTGCTACTTT 59.486 37.500 0.00 0.00 31.68 2.66
713 738 4.216687 CGTTGCTACTTTGTTCCCCAATTA 59.783 41.667 0.00 0.00 31.81 1.40
717 742 6.727394 TGCTACTTTGTTCCCCAATTATACT 58.273 36.000 0.00 0.00 31.81 2.12
720 745 7.201705 GCTACTTTGTTCCCCAATTATACTGAC 60.202 40.741 0.00 0.00 31.81 3.51
721 746 6.548321 ACTTTGTTCCCCAATTATACTGACA 58.452 36.000 0.00 0.00 31.81 3.58
728 753 8.962679 GTTCCCCAATTATACTGACACATTTTA 58.037 33.333 0.00 0.00 0.00 1.52
770 795 1.680735 TGAACTGGTTCATGTGTTGGC 59.319 47.619 11.53 0.00 43.90 4.52
771 796 1.956477 GAACTGGTTCATGTGTTGGCT 59.044 47.619 8.40 0.00 39.31 4.75
772 797 2.071778 ACTGGTTCATGTGTTGGCTT 57.928 45.000 0.00 0.00 0.00 4.35
773 798 3.222173 ACTGGTTCATGTGTTGGCTTA 57.778 42.857 0.00 0.00 0.00 3.09
774 799 3.149196 ACTGGTTCATGTGTTGGCTTAG 58.851 45.455 0.00 0.00 0.00 2.18
775 800 3.181445 ACTGGTTCATGTGTTGGCTTAGA 60.181 43.478 0.00 0.00 0.00 2.10
776 801 3.820467 CTGGTTCATGTGTTGGCTTAGAA 59.180 43.478 0.00 0.00 0.00 2.10
777 802 4.211125 TGGTTCATGTGTTGGCTTAGAAA 58.789 39.130 0.00 0.00 0.00 2.52
778 803 4.278170 TGGTTCATGTGTTGGCTTAGAAAG 59.722 41.667 0.00 0.00 0.00 2.62
797 822 9.905713 TTAGAAAGCATTCTACATTGATTACCT 57.094 29.630 10.81 0.00 45.52 3.08
798 823 8.814038 AGAAAGCATTCTACATTGATTACCTT 57.186 30.769 1.55 0.00 44.11 3.50
799 824 9.247861 AGAAAGCATTCTACATTGATTACCTTT 57.752 29.630 1.55 0.00 44.11 3.11
800 825 9.860898 GAAAGCATTCTACATTGATTACCTTTT 57.139 29.630 0.00 0.00 32.57 2.27
801 826 9.643693 AAAGCATTCTACATTGATTACCTTTTG 57.356 29.630 0.00 0.00 0.00 2.44
802 827 7.260603 AGCATTCTACATTGATTACCTTTTGC 58.739 34.615 0.00 0.00 0.00 3.68
803 828 6.476706 GCATTCTACATTGATTACCTTTTGCC 59.523 38.462 0.00 0.00 0.00 4.52
804 829 7.631377 GCATTCTACATTGATTACCTTTTGCCT 60.631 37.037 0.00 0.00 0.00 4.75
805 830 7.775053 TTCTACATTGATTACCTTTTGCCTT 57.225 32.000 0.00 0.00 0.00 4.35
815 840 3.317406 ACCTTTTGCCTTTCCATTCCTT 58.683 40.909 0.00 0.00 0.00 3.36
817 842 5.093677 ACCTTTTGCCTTTCCATTCCTTAT 58.906 37.500 0.00 0.00 0.00 1.73
827 852 7.251281 CCTTTCCATTCCTTATTCTCGTTTTC 58.749 38.462 0.00 0.00 0.00 2.29
830 855 4.338400 CCATTCCTTATTCTCGTTTTCCCC 59.662 45.833 0.00 0.00 0.00 4.81
838 863 0.459759 CTCGTTTTCCCCGGTAGCTC 60.460 60.000 0.00 0.00 0.00 4.09
872 897 7.038048 TCTGACATAGCAACAAGACAATCTAG 58.962 38.462 0.00 0.00 0.00 2.43
908 933 4.164843 GGCAATACCTTCCCTGTGATAA 57.835 45.455 0.00 0.00 34.51 1.75
923 948 4.939509 GTGATAACACATTTGCCGTACT 57.060 40.909 0.00 0.00 45.32 2.73
927 952 6.311935 GTGATAACACATTTGCCGTACTCTTA 59.688 38.462 0.00 0.00 45.32 2.10
964 989 8.824756 TCTTATCTTGAAGGTAGTCACATAGT 57.175 34.615 0.00 0.00 0.00 2.12
968 993 4.202245 TGAAGGTAGTCACATAGTTGCC 57.798 45.455 0.00 0.00 0.00 4.52
980 1005 5.059833 CACATAGTTGCCCTATTTCTCCTC 58.940 45.833 0.00 0.00 33.96 3.71
1076 1101 3.365364 GCACTTCATACTCAGGTTTGTGC 60.365 47.826 0.00 0.00 0.00 4.57
1082 1107 5.069318 TCATACTCAGGTTTGTGCAATTCA 58.931 37.500 0.00 0.00 0.00 2.57
1086 1111 4.232221 CTCAGGTTTGTGCAATTCATCAC 58.768 43.478 0.00 0.00 0.00 3.06
1095 1120 7.739022 TTGTGCAATTCATCACGAATAATTC 57.261 32.000 0.00 0.00 43.83 2.17
1251 1359 1.331756 GGCATAACCAGATCACAAGCG 59.668 52.381 0.00 0.00 38.86 4.68
1275 1383 4.111375 AGATGAGTGGCTAAAGTGTACG 57.889 45.455 0.00 0.00 0.00 3.67
1297 1405 4.270084 CGTGTGCTTGTTTTAGACTGAAGA 59.730 41.667 0.00 0.00 0.00 2.87
1360 1468 0.607489 ATGCTGGTCAGTGCTTGTCC 60.607 55.000 0.00 0.00 35.78 4.02
1468 1576 8.718656 AGATAGTAACAAATTTCATAGCCCTCT 58.281 33.333 0.00 0.00 0.00 3.69
1550 1659 2.299867 ACAACCATGCCCAAGAAATGAC 59.700 45.455 0.00 0.00 0.00 3.06
1556 1665 2.083774 TGCCCAAGAAATGACGATCAC 58.916 47.619 0.00 0.00 0.00 3.06
1557 1666 1.062587 GCCCAAGAAATGACGATCACG 59.937 52.381 0.00 0.00 45.75 4.35
1560 1669 2.348666 CCAAGAAATGACGATCACGACC 59.651 50.000 0.00 0.00 42.66 4.79
1563 1672 4.713824 AGAAATGACGATCACGACCTAA 57.286 40.909 0.00 0.00 42.66 2.69
1565 1674 4.863131 AGAAATGACGATCACGACCTAAAC 59.137 41.667 0.00 0.00 42.66 2.01
1567 1676 5.571784 AATGACGATCACGACCTAAACTA 57.428 39.130 0.00 0.00 42.66 2.24
1579 1688 6.090898 CACGACCTAAACTAGTCTTGGAAATG 59.909 42.308 3.53 0.00 30.81 2.32
1580 1689 6.164176 CGACCTAAACTAGTCTTGGAAATGT 58.836 40.000 3.53 0.00 0.00 2.71
1581 1690 6.090898 CGACCTAAACTAGTCTTGGAAATGTG 59.909 42.308 3.53 0.00 0.00 3.21
1582 1691 6.838382 ACCTAAACTAGTCTTGGAAATGTGT 58.162 36.000 3.53 0.00 0.00 3.72
1583 1692 6.710744 ACCTAAACTAGTCTTGGAAATGTGTG 59.289 38.462 3.53 0.00 0.00 3.82
1584 1693 6.934645 CCTAAACTAGTCTTGGAAATGTGTGA 59.065 38.462 0.00 0.00 0.00 3.58
1585 1694 6.619801 AAACTAGTCTTGGAAATGTGTGAC 57.380 37.500 0.00 0.00 0.00 3.67
1586 1695 4.307432 ACTAGTCTTGGAAATGTGTGACG 58.693 43.478 0.00 0.00 0.00 4.35
1589 1698 3.312421 AGTCTTGGAAATGTGTGACGTTG 59.688 43.478 0.00 0.00 0.00 4.10
1597 1706 4.370364 AATGTGTGACGTTGAGCTTTTT 57.630 36.364 0.00 0.00 0.00 1.94
1630 1739 7.117236 GCATTCAGAATTGTCACAAACATCATT 59.883 33.333 0.00 0.00 37.82 2.57
1682 1793 5.348418 CAAAGATTTGCTCTCTGAACGAA 57.652 39.130 0.00 0.00 31.03 3.85
1685 1796 3.373439 AGATTTGCTCTCTGAACGAATGC 59.627 43.478 0.00 0.00 0.00 3.56
1688 1799 0.458543 GCTCTCTGAACGAATGCGGA 60.459 55.000 0.00 0.00 43.17 5.54
1689 1800 1.272781 CTCTCTGAACGAATGCGGAC 58.727 55.000 0.00 0.00 43.17 4.79
1699 1810 4.330944 ACGAATGCGGACCTTATGATAA 57.669 40.909 0.00 0.00 43.17 1.75
1835 1946 0.607489 TGGCTGAGAAGAAAGCTGCC 60.607 55.000 0.00 0.00 44.09 4.85
2021 2132 1.338020 GCAAAGAACTTCCACCACCAG 59.662 52.381 0.00 0.00 0.00 4.00
2084 2195 3.683340 CAGATTCTCCATATGACCATGCG 59.317 47.826 3.65 0.00 0.00 4.73
2246 2357 2.574399 GGCGGTGACTGGAGAGAC 59.426 66.667 0.00 0.00 0.00 3.36
2852 2979 2.223409 CCAGGTATTCGTCGTCGATTCA 60.223 50.000 5.44 0.00 45.65 2.57
2986 3116 5.120830 GCAGACGAATTAGAAAGAAGCAAGA 59.879 40.000 0.00 0.00 0.00 3.02
3044 3182 4.381292 CCTCAGCAGTGAAATCCCATTTTC 60.381 45.833 0.00 0.00 36.38 2.29
3122 4420 5.705441 TGGATGCCAAAAGTAAAGTACAGAG 59.295 40.000 0.00 0.00 0.00 3.35
3167 4466 4.090210 GCACGAAAGTAGCTTTCTACACTC 59.910 45.833 16.42 1.15 45.19 3.51
3174 4473 1.203523 AGCTTTCTACACTCTGGCTCG 59.796 52.381 0.00 0.00 0.00 5.03
3184 4483 0.813210 CTCTGGCTCGAAATGCTCCC 60.813 60.000 0.00 0.00 0.00 4.30
3203 4502 2.094734 CCCGGCGTGAACAGTAAAATAC 59.905 50.000 6.01 0.00 0.00 1.89
3257 4615 9.364110 GTAAAATGCGTTTTAAACATTTTCAGG 57.636 29.630 22.22 1.71 45.92 3.86
3262 4620 7.426410 TGCGTTTTAAACATTTTCAGGACATA 58.574 30.769 8.61 0.00 0.00 2.29
3301 4660 3.190535 ACGCCTTACACCAATGTGATTTC 59.809 43.478 0.00 0.00 45.76 2.17
3303 4662 3.758300 CCTTACACCAATGTGATTTCGC 58.242 45.455 0.00 0.00 45.76 4.70
3309 4677 1.135717 CCAATGTGATTTCGCGAGCAA 60.136 47.619 9.59 1.39 0.00 3.91
3325 4693 3.489059 CGAGCAAACACACCAAACATTCT 60.489 43.478 0.00 0.00 0.00 2.40
3412 4781 2.830370 CCGGGAGCATTTGAGCCC 60.830 66.667 0.00 0.00 37.21 5.19
3415 4784 2.272146 GGAGCATTTGAGCCCGGA 59.728 61.111 0.73 0.00 34.23 5.14
3429 4798 2.505819 AGCCCGGATGTAGAAACTTCAT 59.494 45.455 0.73 0.00 32.70 2.57
3433 4802 5.511545 GCCCGGATGTAGAAACTTCATATCT 60.512 44.000 0.73 0.00 32.70 1.98
3435 4804 6.239317 CCCGGATGTAGAAACTTCATATCTGA 60.239 42.308 0.73 0.00 32.70 3.27
3437 4806 7.203218 CGGATGTAGAAACTTCATATCTGACA 58.797 38.462 0.00 0.00 32.70 3.58
3438 4807 7.380870 CGGATGTAGAAACTTCATATCTGACAG 59.619 40.741 0.00 0.00 32.70 3.51
3439 4808 8.417106 GGATGTAGAAACTTCATATCTGACAGA 58.583 37.037 7.80 7.80 32.70 3.41
3440 4809 9.243637 GATGTAGAAACTTCATATCTGACAGAC 57.756 37.037 7.47 0.00 31.67 3.51
3445 4821 5.850557 ACTTCATATCTGACAGACCAGAG 57.149 43.478 7.47 5.37 45.27 3.35
3448 4824 3.205282 TCATATCTGACAGACCAGAGGGA 59.795 47.826 7.47 0.00 45.27 4.20
3472 4848 8.257306 GGAAAAAGTGGAGATGGCAAAATAATA 58.743 33.333 0.00 0.00 0.00 0.98
3473 4849 9.651913 GAAAAAGTGGAGATGGCAAAATAATAA 57.348 29.630 0.00 0.00 0.00 1.40
3533 4909 3.765511 ACAAGTGCCAAATGACATAGCAT 59.234 39.130 9.99 0.00 35.62 3.79
3595 4971 7.885009 AAACTAACCAAACTGGCTAACTTAA 57.115 32.000 0.00 0.00 42.67 1.85
3623 4999 8.956426 ACATGGAGGTAACAACAACATAAATAG 58.044 33.333 0.00 0.00 41.41 1.73
3624 5000 7.385778 TGGAGGTAACAACAACATAAATAGC 57.614 36.000 0.00 0.00 41.41 2.97
3625 5001 6.943146 TGGAGGTAACAACAACATAAATAGCA 59.057 34.615 0.00 0.00 41.41 3.49
3626 5002 7.448777 TGGAGGTAACAACAACATAAATAGCAA 59.551 33.333 0.00 0.00 41.41 3.91
3627 5003 8.301002 GGAGGTAACAACAACATAAATAGCAAA 58.699 33.333 0.00 0.00 41.41 3.68
3628 5004 9.341899 GAGGTAACAACAACATAAATAGCAAAG 57.658 33.333 0.00 0.00 41.41 2.77
3629 5005 9.073475 AGGTAACAACAACATAAATAGCAAAGA 57.927 29.630 0.00 0.00 41.41 2.52
3630 5006 9.685828 GGTAACAACAACATAAATAGCAAAGAA 57.314 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.436998 CACTCACCGAGGACCGCC 62.437 72.222 0.00 0.00 36.84 6.13
32 33 2.615262 GATCACTCACCGAGGACCGC 62.615 65.000 0.00 0.00 36.84 5.68
33 34 1.032657 AGATCACTCACCGAGGACCG 61.033 60.000 0.00 0.00 33.35 4.79
34 35 1.950909 CTAGATCACTCACCGAGGACC 59.049 57.143 0.00 0.00 33.35 4.46
35 36 1.950909 CCTAGATCACTCACCGAGGAC 59.049 57.143 0.00 0.00 33.35 3.85
36 37 1.133761 CCCTAGATCACTCACCGAGGA 60.134 57.143 0.00 0.00 33.35 3.71
37 38 1.323412 CCCTAGATCACTCACCGAGG 58.677 60.000 0.00 0.00 33.35 4.63
38 39 2.060050 ACCCTAGATCACTCACCGAG 57.940 55.000 0.00 0.00 35.52 4.63
39 40 2.526888 AACCCTAGATCACTCACCGA 57.473 50.000 0.00 0.00 0.00 4.69
40 41 3.491104 GCTAAACCCTAGATCACTCACCG 60.491 52.174 0.00 0.00 0.00 4.94
41 42 3.491104 CGCTAAACCCTAGATCACTCACC 60.491 52.174 0.00 0.00 0.00 4.02
42 43 3.707793 CGCTAAACCCTAGATCACTCAC 58.292 50.000 0.00 0.00 0.00 3.51
43 44 2.100916 GCGCTAAACCCTAGATCACTCA 59.899 50.000 0.00 0.00 0.00 3.41
44 45 2.362717 AGCGCTAAACCCTAGATCACTC 59.637 50.000 8.99 0.00 0.00 3.51
45 46 2.389715 AGCGCTAAACCCTAGATCACT 58.610 47.619 8.99 0.00 0.00 3.41
46 47 2.892784 AGCGCTAAACCCTAGATCAC 57.107 50.000 8.99 0.00 0.00 3.06
47 48 2.102588 GGAAGCGCTAAACCCTAGATCA 59.897 50.000 12.05 0.00 0.00 2.92
48 49 2.548280 GGGAAGCGCTAAACCCTAGATC 60.548 54.545 28.41 13.23 39.28 2.75
49 50 1.416772 GGGAAGCGCTAAACCCTAGAT 59.583 52.381 28.41 5.42 39.28 1.98
50 51 0.828677 GGGAAGCGCTAAACCCTAGA 59.171 55.000 28.41 0.00 39.28 2.43
51 52 0.179054 GGGGAAGCGCTAAACCCTAG 60.179 60.000 31.61 0.00 41.79 3.02
52 53 1.909975 GGGGAAGCGCTAAACCCTA 59.090 57.895 31.61 0.00 41.79 3.53
53 54 1.923909 AGGGGAAGCGCTAAACCCT 60.924 57.895 30.30 30.30 46.67 4.34
54 55 0.253894 TTAGGGGAAGCGCTAAACCC 59.746 55.000 27.55 27.55 41.80 4.11
55 56 1.065636 AGTTAGGGGAAGCGCTAAACC 60.066 52.381 12.05 14.97 0.00 3.27
56 57 2.007608 CAGTTAGGGGAAGCGCTAAAC 58.992 52.381 12.05 8.81 0.00 2.01
57 58 1.065709 CCAGTTAGGGGAAGCGCTAAA 60.066 52.381 12.05 0.00 0.00 1.85
58 59 0.539986 CCAGTTAGGGGAAGCGCTAA 59.460 55.000 12.05 0.00 0.00 3.09
59 60 2.208527 CCAGTTAGGGGAAGCGCTA 58.791 57.895 12.05 0.00 0.00 4.26
60 61 2.990479 CCAGTTAGGGGAAGCGCT 59.010 61.111 2.64 2.64 0.00 5.92
69 70 0.613777 AGGAAACGAGCCCAGTTAGG 59.386 55.000 0.00 0.00 37.03 2.69
70 71 1.550976 AGAGGAAACGAGCCCAGTTAG 59.449 52.381 0.00 0.00 0.00 2.34
71 72 1.275291 CAGAGGAAACGAGCCCAGTTA 59.725 52.381 0.00 0.00 0.00 2.24
72 73 0.035458 CAGAGGAAACGAGCCCAGTT 59.965 55.000 0.00 0.00 0.00 3.16
73 74 1.122019 ACAGAGGAAACGAGCCCAGT 61.122 55.000 0.00 0.00 0.00 4.00
74 75 0.035458 AACAGAGGAAACGAGCCCAG 59.965 55.000 0.00 0.00 0.00 4.45
75 76 0.250295 CAACAGAGGAAACGAGCCCA 60.250 55.000 0.00 0.00 0.00 5.36
76 77 1.578206 GCAACAGAGGAAACGAGCCC 61.578 60.000 0.00 0.00 0.00 5.19
77 78 0.603975 AGCAACAGAGGAAACGAGCC 60.604 55.000 0.00 0.00 0.00 4.70
78 79 2.080286 TAGCAACAGAGGAAACGAGC 57.920 50.000 0.00 0.00 0.00 5.03
79 80 5.613358 AAATTAGCAACAGAGGAAACGAG 57.387 39.130 0.00 0.00 0.00 4.18
80 81 6.721571 CTAAATTAGCAACAGAGGAAACGA 57.278 37.500 0.00 0.00 0.00 3.85
94 95 8.565472 CTTGGAAACGAGGACGCTAAATTAGC 62.565 46.154 14.59 14.59 42.14 3.09
95 96 4.178540 TGGAAACGAGGACGCTAAATTAG 58.821 43.478 0.00 0.00 43.96 1.73
96 97 4.191033 TGGAAACGAGGACGCTAAATTA 57.809 40.909 0.00 0.00 43.96 1.40
97 98 3.048337 TGGAAACGAGGACGCTAAATT 57.952 42.857 0.00 0.00 43.96 1.82
98 99 2.754946 TGGAAACGAGGACGCTAAAT 57.245 45.000 0.00 0.00 43.96 1.40
99 100 2.224113 ACTTGGAAACGAGGACGCTAAA 60.224 45.455 0.00 0.00 46.96 1.85
100 101 1.342174 ACTTGGAAACGAGGACGCTAA 59.658 47.619 0.00 0.00 46.96 3.09
101 102 0.963962 ACTTGGAAACGAGGACGCTA 59.036 50.000 0.00 0.00 46.96 4.26
102 103 0.319641 GACTTGGAAACGAGGACGCT 60.320 55.000 0.00 0.00 46.96 5.07
103 104 0.599204 TGACTTGGAAACGAGGACGC 60.599 55.000 0.00 0.00 46.96 5.19
104 105 1.137513 GTGACTTGGAAACGAGGACG 58.862 55.000 0.00 0.00 46.96 4.79
105 106 1.137513 CGTGACTTGGAAACGAGGAC 58.862 55.000 0.00 0.00 46.96 3.85
106 107 0.032952 CCGTGACTTGGAAACGAGGA 59.967 55.000 0.00 0.00 46.96 3.71
107 108 1.566018 GCCGTGACTTGGAAACGAGG 61.566 60.000 0.00 0.00 46.96 4.63
109 110 0.878523 CAGCCGTGACTTGGAAACGA 60.879 55.000 0.00 0.00 39.64 3.85
110 111 1.157870 ACAGCCGTGACTTGGAAACG 61.158 55.000 0.00 0.00 37.07 3.60
111 112 0.307760 CACAGCCGTGACTTGGAAAC 59.692 55.000 0.00 0.00 46.80 2.78
112 113 2.701587 CACAGCCGTGACTTGGAAA 58.298 52.632 0.00 0.00 46.80 3.13
113 114 4.454948 CACAGCCGTGACTTGGAA 57.545 55.556 0.00 0.00 46.80 3.53
121 122 2.244436 CTGCGGAATTCACAGCCGTG 62.244 60.000 13.00 0.00 46.38 4.94
122 123 2.031919 TGCGGAATTCACAGCCGT 59.968 55.556 7.93 0.00 46.38 5.68
124 125 1.372087 CTCCTGCGGAATTCACAGCC 61.372 60.000 17.86 0.00 0.00 4.85
125 126 1.372087 CCTCCTGCGGAATTCACAGC 61.372 60.000 17.86 14.69 0.00 4.40
126 127 0.036010 ACCTCCTGCGGAATTCACAG 60.036 55.000 16.81 16.81 0.00 3.66
127 128 0.321564 CACCTCCTGCGGAATTCACA 60.322 55.000 7.93 4.05 0.00 3.58
128 129 1.026718 CCACCTCCTGCGGAATTCAC 61.027 60.000 7.93 0.00 0.00 3.18
129 130 1.299648 CCACCTCCTGCGGAATTCA 59.700 57.895 7.93 0.00 0.00 2.57
130 131 2.115291 GCCACCTCCTGCGGAATTC 61.115 63.158 0.00 0.00 0.00 2.17
131 132 2.044946 GCCACCTCCTGCGGAATT 60.045 61.111 0.00 0.00 0.00 2.17
132 133 4.473520 CGCCACCTCCTGCGGAAT 62.474 66.667 0.00 0.00 46.65 3.01
147 148 3.615709 AAAAACAGGGCCAGCCGC 61.616 61.111 6.18 0.00 36.85 6.53
148 149 2.339712 CAAAAACAGGGCCAGCCG 59.660 61.111 6.18 0.00 36.85 5.52
149 150 2.031012 GCAAAAACAGGGCCAGCC 59.969 61.111 6.18 0.00 0.00 4.85
150 151 2.031012 GGCAAAAACAGGGCCAGC 59.969 61.111 6.18 0.00 46.92 4.85
167 168 1.616994 CCCTCTAACTGCAAAAGGGGG 60.617 57.143 12.03 12.03 42.57 5.40
168 169 1.839424 CCCTCTAACTGCAAAAGGGG 58.161 55.000 9.58 6.20 42.57 4.79
170 171 0.804989 CGCCCTCTAACTGCAAAAGG 59.195 55.000 0.00 0.00 0.00 3.11
171 172 0.169009 GCGCCCTCTAACTGCAAAAG 59.831 55.000 0.00 0.00 0.00 2.27
172 173 0.536233 TGCGCCCTCTAACTGCAAAA 60.536 50.000 4.18 0.00 31.69 2.44
173 174 1.072332 TGCGCCCTCTAACTGCAAA 59.928 52.632 4.18 0.00 31.69 3.68
174 175 1.671054 GTGCGCCCTCTAACTGCAA 60.671 57.895 4.18 0.00 37.30 4.08
175 176 2.047274 GTGCGCCCTCTAACTGCA 60.047 61.111 4.18 0.00 0.00 4.41
176 177 2.047274 TGTGCGCCCTCTAACTGC 60.047 61.111 4.18 0.00 0.00 4.40
177 178 0.459237 CTCTGTGCGCCCTCTAACTG 60.459 60.000 4.18 0.00 0.00 3.16
178 179 0.900647 ACTCTGTGCGCCCTCTAACT 60.901 55.000 4.18 0.00 0.00 2.24
179 180 0.737715 CACTCTGTGCGCCCTCTAAC 60.738 60.000 4.18 0.00 0.00 2.34
180 181 1.591703 CACTCTGTGCGCCCTCTAA 59.408 57.895 4.18 0.00 0.00 2.10
181 182 2.351244 CCACTCTGTGCGCCCTCTA 61.351 63.158 4.18 0.00 31.34 2.43
182 183 3.699894 CCACTCTGTGCGCCCTCT 61.700 66.667 4.18 0.00 31.34 3.69
183 184 3.240134 TTCCACTCTGTGCGCCCTC 62.240 63.158 4.18 0.00 31.34 4.30
184 185 3.241530 TTCCACTCTGTGCGCCCT 61.242 61.111 4.18 0.00 31.34 5.19
185 186 2.743928 CTTCCACTCTGTGCGCCC 60.744 66.667 4.18 0.00 31.34 6.13
186 187 2.031163 ACTTCCACTCTGTGCGCC 59.969 61.111 4.18 0.00 31.34 6.53
187 188 2.959357 GCACTTCCACTCTGTGCGC 61.959 63.158 0.00 0.00 45.62 6.09
188 189 3.248029 GCACTTCCACTCTGTGCG 58.752 61.111 0.00 0.00 45.62 5.34
190 191 0.250209 AGCAGCACTTCCACTCTGTG 60.250 55.000 0.00 0.00 35.08 3.66
191 192 0.471617 AAGCAGCACTTCCACTCTGT 59.528 50.000 0.00 0.00 30.77 3.41
192 193 2.072298 GTAAGCAGCACTTCCACTCTG 58.928 52.381 0.00 0.00 39.97 3.35
193 194 1.974236 AGTAAGCAGCACTTCCACTCT 59.026 47.619 0.00 0.00 39.97 3.24
194 195 2.072298 CAGTAAGCAGCACTTCCACTC 58.928 52.381 0.00 0.00 39.97 3.51
195 196 1.417890 ACAGTAAGCAGCACTTCCACT 59.582 47.619 0.00 0.00 39.97 4.00
196 197 1.532868 CACAGTAAGCAGCACTTCCAC 59.467 52.381 0.00 0.00 39.97 4.02
197 198 1.543208 CCACAGTAAGCAGCACTTCCA 60.543 52.381 0.00 0.00 39.97 3.53
198 199 1.160137 CCACAGTAAGCAGCACTTCC 58.840 55.000 0.00 0.00 39.97 3.46
199 200 1.160137 CCCACAGTAAGCAGCACTTC 58.840 55.000 0.00 0.00 39.97 3.01
200 201 0.764890 TCCCACAGTAAGCAGCACTT 59.235 50.000 0.00 0.00 42.76 3.16
201 202 0.987294 ATCCCACAGTAAGCAGCACT 59.013 50.000 0.00 0.00 0.00 4.40
202 203 1.089920 CATCCCACAGTAAGCAGCAC 58.910 55.000 0.00 0.00 0.00 4.40
203 204 0.035152 CCATCCCACAGTAAGCAGCA 60.035 55.000 0.00 0.00 0.00 4.41
204 205 0.749454 CCCATCCCACAGTAAGCAGC 60.749 60.000 0.00 0.00 0.00 5.25
205 206 0.620556 ACCCATCCCACAGTAAGCAG 59.379 55.000 0.00 0.00 0.00 4.24
206 207 1.557832 GTACCCATCCCACAGTAAGCA 59.442 52.381 0.00 0.00 0.00 3.91
207 208 1.838077 AGTACCCATCCCACAGTAAGC 59.162 52.381 0.00 0.00 0.00 3.09
208 209 4.099573 CACTAGTACCCATCCCACAGTAAG 59.900 50.000 0.00 0.00 0.00 2.34
209 210 4.028131 CACTAGTACCCATCCCACAGTAA 58.972 47.826 0.00 0.00 0.00 2.24
210 211 3.270169 TCACTAGTACCCATCCCACAGTA 59.730 47.826 0.00 0.00 0.00 2.74
211 212 2.043939 TCACTAGTACCCATCCCACAGT 59.956 50.000 0.00 0.00 0.00 3.55
212 213 2.695666 CTCACTAGTACCCATCCCACAG 59.304 54.545 0.00 0.00 0.00 3.66
213 214 2.747177 CTCACTAGTACCCATCCCACA 58.253 52.381 0.00 0.00 0.00 4.17
214 215 1.413077 GCTCACTAGTACCCATCCCAC 59.587 57.143 0.00 0.00 0.00 4.61
215 216 1.789523 GCTCACTAGTACCCATCCCA 58.210 55.000 0.00 0.00 0.00 4.37
216 217 0.674534 CGCTCACTAGTACCCATCCC 59.325 60.000 0.00 0.00 0.00 3.85
217 218 0.674534 CCGCTCACTAGTACCCATCC 59.325 60.000 0.00 0.00 0.00 3.51
218 219 0.674534 CCCGCTCACTAGTACCCATC 59.325 60.000 0.00 0.00 0.00 3.51
219 220 0.032416 ACCCGCTCACTAGTACCCAT 60.032 55.000 0.00 0.00 0.00 4.00
220 221 0.968901 CACCCGCTCACTAGTACCCA 60.969 60.000 0.00 0.00 0.00 4.51
221 222 1.814527 CACCCGCTCACTAGTACCC 59.185 63.158 0.00 0.00 0.00 3.69
222 223 1.141234 GCACCCGCTCACTAGTACC 59.859 63.158 0.00 0.00 34.30 3.34
223 224 0.460311 ATGCACCCGCTCACTAGTAC 59.540 55.000 0.00 0.00 39.64 2.73
224 225 0.459899 CATGCACCCGCTCACTAGTA 59.540 55.000 0.00 0.00 39.64 1.82
225 226 1.219124 CATGCACCCGCTCACTAGT 59.781 57.895 0.00 0.00 39.64 2.57
226 227 1.086067 CACATGCACCCGCTCACTAG 61.086 60.000 0.00 0.00 39.64 2.57
227 228 1.079197 CACATGCACCCGCTCACTA 60.079 57.895 0.00 0.00 39.64 2.74
228 229 2.359107 CACATGCACCCGCTCACT 60.359 61.111 0.00 0.00 39.64 3.41
229 230 3.434319 CCACATGCACCCGCTCAC 61.434 66.667 0.00 0.00 39.64 3.51
230 231 3.952508 ACCACATGCACCCGCTCA 61.953 61.111 0.00 0.00 39.64 4.26
231 232 2.796483 TACACCACATGCACCCGCTC 62.796 60.000 0.00 0.00 39.64 5.03
232 233 2.404566 TTACACCACATGCACCCGCT 62.405 55.000 0.00 0.00 39.64 5.52
233 234 1.969064 TTACACCACATGCACCCGC 60.969 57.895 0.00 0.00 39.24 6.13
234 235 0.605319 AGTTACACCACATGCACCCG 60.605 55.000 0.00 0.00 0.00 5.28
235 236 1.165270 GAGTTACACCACATGCACCC 58.835 55.000 0.00 0.00 0.00 4.61
236 237 2.076863 GAGAGTTACACCACATGCACC 58.923 52.381 0.00 0.00 0.00 5.01
237 238 2.076863 GGAGAGTTACACCACATGCAC 58.923 52.381 0.00 0.00 0.00 4.57
238 239 1.696884 TGGAGAGTTACACCACATGCA 59.303 47.619 0.00 0.00 34.50 3.96
239 240 2.472695 TGGAGAGTTACACCACATGC 57.527 50.000 0.00 0.00 34.50 4.06
244 245 1.717032 AGCTGTGGAGAGTTACACCA 58.283 50.000 0.00 0.00 36.80 4.17
245 246 2.613223 GGAAGCTGTGGAGAGTTACACC 60.613 54.545 0.00 0.00 36.80 4.16
246 247 2.300437 AGGAAGCTGTGGAGAGTTACAC 59.700 50.000 0.00 0.00 38.08 2.90
247 248 2.609747 AGGAAGCTGTGGAGAGTTACA 58.390 47.619 0.00 0.00 0.00 2.41
248 249 3.764972 ACTAGGAAGCTGTGGAGAGTTAC 59.235 47.826 0.00 0.00 0.00 2.50
249 250 3.764434 CACTAGGAAGCTGTGGAGAGTTA 59.236 47.826 0.00 0.00 0.00 2.24
250 251 2.564947 CACTAGGAAGCTGTGGAGAGTT 59.435 50.000 0.00 0.00 0.00 3.01
251 252 2.175202 CACTAGGAAGCTGTGGAGAGT 58.825 52.381 0.00 0.00 0.00 3.24
252 253 2.426738 CTCACTAGGAAGCTGTGGAGAG 59.573 54.545 0.00 0.00 33.04 3.20
267 268 1.079197 CACATGCACCCGCTCACTA 60.079 57.895 0.00 0.00 39.64 2.74
274 275 2.032528 ACTGTCCACATGCACCCG 59.967 61.111 0.00 0.00 0.00 5.28
278 279 1.877680 GCAGTACACTGTCCACATGCA 60.878 52.381 10.87 0.00 45.45 3.96
281 282 3.165875 ACTAGCAGTACACTGTCCACAT 58.834 45.455 10.87 0.00 45.45 3.21
288 289 6.785488 TCAATTGAAACTAGCAGTACACTG 57.215 37.500 5.45 4.96 46.40 3.66
304 305 2.629137 ACACAATGCTGCCTTCAATTGA 59.371 40.909 14.26 3.38 0.00 2.57
349 350 1.308998 AAGCTTCACAAACAGACCGG 58.691 50.000 0.00 0.00 0.00 5.28
350 351 2.541588 CCAAAGCTTCACAAACAGACCG 60.542 50.000 0.00 0.00 0.00 4.79
351 352 2.427095 ACCAAAGCTTCACAAACAGACC 59.573 45.455 0.00 0.00 0.00 3.85
352 353 3.782889 ACCAAAGCTTCACAAACAGAC 57.217 42.857 0.00 0.00 0.00 3.51
353 354 4.493547 CAAACCAAAGCTTCACAAACAGA 58.506 39.130 0.00 0.00 0.00 3.41
354 355 3.618150 CCAAACCAAAGCTTCACAAACAG 59.382 43.478 0.00 0.00 0.00 3.16
355 356 3.594134 CCAAACCAAAGCTTCACAAACA 58.406 40.909 0.00 0.00 0.00 2.83
356 357 2.351418 GCCAAACCAAAGCTTCACAAAC 59.649 45.455 0.00 0.00 0.00 2.93
357 358 2.235898 AGCCAAACCAAAGCTTCACAAA 59.764 40.909 0.00 0.00 31.27 2.83
358 359 1.830477 AGCCAAACCAAAGCTTCACAA 59.170 42.857 0.00 0.00 31.27 3.33
359 360 1.484038 AGCCAAACCAAAGCTTCACA 58.516 45.000 0.00 0.00 31.27 3.58
360 361 3.942130 ATAGCCAAACCAAAGCTTCAC 57.058 42.857 0.00 0.00 38.06 3.18
361 362 4.343526 TCAAATAGCCAAACCAAAGCTTCA 59.656 37.500 0.00 0.00 38.06 3.02
362 363 4.881920 TCAAATAGCCAAACCAAAGCTTC 58.118 39.130 0.00 0.00 38.06 3.86
363 364 4.800582 GCTCAAATAGCCAAACCAAAGCTT 60.801 41.667 0.00 0.00 46.25 3.74
364 365 3.306294 GCTCAAATAGCCAAACCAAAGCT 60.306 43.478 0.00 0.00 46.25 3.74
365 366 2.995939 GCTCAAATAGCCAAACCAAAGC 59.004 45.455 0.00 0.00 46.25 3.51
377 378 8.883954 TGACTCTGAATCTAATGCTCAAATAG 57.116 34.615 0.00 0.00 0.00 1.73
378 379 9.269453 CATGACTCTGAATCTAATGCTCAAATA 57.731 33.333 0.00 0.00 0.00 1.40
379 380 7.774157 ACATGACTCTGAATCTAATGCTCAAAT 59.226 33.333 0.00 0.00 0.00 2.32
380 381 7.108194 ACATGACTCTGAATCTAATGCTCAAA 58.892 34.615 0.00 0.00 0.00 2.69
381 382 6.647229 ACATGACTCTGAATCTAATGCTCAA 58.353 36.000 0.00 0.00 0.00 3.02
382 383 6.231258 ACATGACTCTGAATCTAATGCTCA 57.769 37.500 0.00 0.00 0.00 4.26
383 384 5.695816 GGACATGACTCTGAATCTAATGCTC 59.304 44.000 0.00 0.00 0.00 4.26
419 420 4.100653 TGTCCTTTCAAAACATTGGATGCA 59.899 37.500 0.00 0.00 0.00 3.96
420 421 4.630111 TGTCCTTTCAAAACATTGGATGC 58.370 39.130 0.00 0.00 0.00 3.91
423 424 6.267471 AGCTATTGTCCTTTCAAAACATTGGA 59.733 34.615 0.00 0.00 0.00 3.53
426 427 7.288810 TCAGCTATTGTCCTTTCAAAACATT 57.711 32.000 0.00 0.00 0.00 2.71
428 429 6.716628 AGATCAGCTATTGTCCTTTCAAAACA 59.283 34.615 0.00 0.00 0.00 2.83
429 430 7.025963 CAGATCAGCTATTGTCCTTTCAAAAC 58.974 38.462 0.00 0.00 0.00 2.43
430 431 6.349611 GCAGATCAGCTATTGTCCTTTCAAAA 60.350 38.462 2.32 0.00 0.00 2.44
433 441 4.080695 AGCAGATCAGCTATTGTCCTTTCA 60.081 41.667 11.39 0.00 44.50 2.69
441 449 1.236628 GGGCAGCAGATCAGCTATTG 58.763 55.000 12.76 2.92 44.54 1.90
446 454 3.771110 GAGGGGGCAGCAGATCAGC 62.771 68.421 1.07 1.07 0.00 4.26
449 457 1.460305 TAGGAGGGGGCAGCAGATC 60.460 63.158 0.00 0.00 0.00 2.75
450 458 1.768077 GTAGGAGGGGGCAGCAGAT 60.768 63.158 0.00 0.00 0.00 2.90
451 459 2.365635 GTAGGAGGGGGCAGCAGA 60.366 66.667 0.00 0.00 0.00 4.26
452 460 1.997874 AAGTAGGAGGGGGCAGCAG 60.998 63.158 0.00 0.00 0.00 4.24
453 461 2.124996 AAGTAGGAGGGGGCAGCA 59.875 61.111 0.00 0.00 0.00 4.41
454 462 2.592308 CAAGTAGGAGGGGGCAGC 59.408 66.667 0.00 0.00 0.00 5.25
456 464 2.189558 TAGGCAAGTAGGAGGGGGCA 62.190 60.000 0.00 0.00 0.00 5.36
457 465 1.384082 TAGGCAAGTAGGAGGGGGC 60.384 63.158 0.00 0.00 0.00 5.80
458 466 1.411651 GCTAGGCAAGTAGGAGGGGG 61.412 65.000 0.00 0.00 0.00 5.40
459 467 0.399233 AGCTAGGCAAGTAGGAGGGG 60.399 60.000 0.00 0.00 0.00 4.79
460 468 2.158445 TCTAGCTAGGCAAGTAGGAGGG 60.158 54.545 20.58 0.00 0.00 4.30
461 469 3.153919 CTCTAGCTAGGCAAGTAGGAGG 58.846 54.545 20.58 0.00 0.00 4.30
462 470 4.093472 TCTCTAGCTAGGCAAGTAGGAG 57.907 50.000 20.58 7.61 0.00 3.69
463 471 4.104897 TCATCTCTAGCTAGGCAAGTAGGA 59.895 45.833 20.58 7.59 0.00 2.94
464 472 4.402829 TCATCTCTAGCTAGGCAAGTAGG 58.597 47.826 20.58 5.67 0.00 3.18
465 473 5.070001 ACTCATCTCTAGCTAGGCAAGTAG 58.930 45.833 20.58 9.47 0.00 2.57
466 474 5.055265 ACTCATCTCTAGCTAGGCAAGTA 57.945 43.478 20.58 0.00 0.00 2.24
467 475 3.909732 ACTCATCTCTAGCTAGGCAAGT 58.090 45.455 20.58 13.36 0.00 3.16
468 476 5.070001 AGTACTCATCTCTAGCTAGGCAAG 58.930 45.833 20.58 10.90 0.00 4.01
469 477 5.055265 AGTACTCATCTCTAGCTAGGCAA 57.945 43.478 20.58 6.97 0.00 4.52
470 478 4.715534 AGTACTCATCTCTAGCTAGGCA 57.284 45.455 20.58 7.89 0.00 4.75
471 479 8.974060 ATAATAGTACTCATCTCTAGCTAGGC 57.026 38.462 20.58 1.15 0.00 3.93
493 501 5.767269 TCGCAGCTGAACAATTTCAAATAA 58.233 33.333 20.43 0.00 41.34 1.40
497 505 3.706802 TTCGCAGCTGAACAATTTCAA 57.293 38.095 20.43 0.00 41.34 2.69
498 506 3.066621 AGTTTCGCAGCTGAACAATTTCA 59.933 39.130 20.43 0.00 39.55 2.69
502 510 3.753272 ACATAGTTTCGCAGCTGAACAAT 59.247 39.130 20.43 0.94 0.00 2.71
503 511 3.058983 CACATAGTTTCGCAGCTGAACAA 60.059 43.478 20.43 2.82 0.00 2.83
513 521 2.979813 CAAACTTGCCACATAGTTTCGC 59.020 45.455 0.00 0.00 41.34 4.70
514 522 3.004315 ACCAAACTTGCCACATAGTTTCG 59.996 43.478 0.00 0.00 41.34 3.46
529 537 1.073098 AAATCCCCGGAGACCAAACT 58.927 50.000 0.73 0.00 0.00 2.66
533 541 1.229690 TCCAAATCCCCGGAGACCA 60.230 57.895 0.73 0.00 0.00 4.02
534 542 3.735725 TCCAAATCCCCGGAGACC 58.264 61.111 0.73 0.00 0.00 3.85
538 546 3.416880 GGCCTCCAAATCCCCGGA 61.417 66.667 0.73 0.00 0.00 5.14
542 550 3.160269 CTCAATATGGCCTCCAAATCCC 58.840 50.000 3.32 0.00 36.95 3.85
545 553 2.601905 GCCTCAATATGGCCTCCAAAT 58.398 47.619 3.32 0.00 44.32 2.32
560 569 0.694771 AATGCAGAACCAGAGCCTCA 59.305 50.000 0.00 0.00 0.00 3.86
582 591 5.423290 TCCAGATTCAGTTTCTCAGATAGCA 59.577 40.000 0.00 0.00 0.00 3.49
589 598 7.509546 ACTTTAACTCCAGATTCAGTTTCTCA 58.490 34.615 0.00 0.00 34.60 3.27
593 602 5.701290 CCGACTTTAACTCCAGATTCAGTTT 59.299 40.000 0.00 0.00 34.60 2.66
634 643 8.918116 ACAAGTCAATCAGCTAGTATCAAGATA 58.082 33.333 0.00 0.00 0.00 1.98
636 645 7.175347 ACAAGTCAATCAGCTAGTATCAAGA 57.825 36.000 0.00 0.00 0.00 3.02
640 649 5.007136 GGCAACAAGTCAATCAGCTAGTATC 59.993 44.000 0.00 0.00 0.00 2.24
641 650 4.878397 GGCAACAAGTCAATCAGCTAGTAT 59.122 41.667 0.00 0.00 0.00 2.12
642 651 4.020218 AGGCAACAAGTCAATCAGCTAGTA 60.020 41.667 0.00 0.00 41.41 1.82
672 697 4.168014 CAACGCATGTTTACTCAATGCAT 58.832 39.130 0.00 0.00 35.72 3.96
688 713 0.948678 GGGAACAAAGTAGCAACGCA 59.051 50.000 0.00 0.00 0.00 5.24
693 718 6.601613 CAGTATAATTGGGGAACAAAGTAGCA 59.398 38.462 0.00 0.00 43.46 3.49
701 726 5.506730 TGTGTCAGTATAATTGGGGAACA 57.493 39.130 0.00 0.00 0.00 3.18
734 759 8.757982 AACCAGTTCAGAAATGCAATAGATAT 57.242 30.769 5.01 0.00 0.00 1.63
771 796 9.905713 AGGTAATCAATGTAGAATGCTTTCTAA 57.094 29.630 20.23 12.66 44.12 2.10
772 797 9.905713 AAGGTAATCAATGTAGAATGCTTTCTA 57.094 29.630 15.97 15.97 42.29 2.10
773 798 8.814038 AAGGTAATCAATGTAGAATGCTTTCT 57.186 30.769 17.87 17.87 44.44 2.52
774 799 9.860898 AAAAGGTAATCAATGTAGAATGCTTTC 57.139 29.630 4.20 4.20 0.00 2.62
775 800 9.643693 CAAAAGGTAATCAATGTAGAATGCTTT 57.356 29.630 0.00 0.00 0.00 3.51
776 801 7.761249 GCAAAAGGTAATCAATGTAGAATGCTT 59.239 33.333 0.00 0.00 0.00 3.91
777 802 7.260603 GCAAAAGGTAATCAATGTAGAATGCT 58.739 34.615 0.00 0.00 0.00 3.79
778 803 6.476706 GGCAAAAGGTAATCAATGTAGAATGC 59.523 38.462 0.00 0.00 0.00 3.56
779 804 7.775120 AGGCAAAAGGTAATCAATGTAGAATG 58.225 34.615 0.00 0.00 0.00 2.67
780 805 7.961326 AGGCAAAAGGTAATCAATGTAGAAT 57.039 32.000 0.00 0.00 0.00 2.40
781 806 7.775053 AAGGCAAAAGGTAATCAATGTAGAA 57.225 32.000 0.00 0.00 0.00 2.10
782 807 7.093945 GGAAAGGCAAAAGGTAATCAATGTAGA 60.094 37.037 0.00 0.00 0.00 2.59
783 808 7.035612 GGAAAGGCAAAAGGTAATCAATGTAG 58.964 38.462 0.00 0.00 0.00 2.74
784 809 6.495181 TGGAAAGGCAAAAGGTAATCAATGTA 59.505 34.615 0.00 0.00 0.00 2.29
785 810 5.306678 TGGAAAGGCAAAAGGTAATCAATGT 59.693 36.000 0.00 0.00 0.00 2.71
786 811 5.792741 TGGAAAGGCAAAAGGTAATCAATG 58.207 37.500 0.00 0.00 0.00 2.82
787 812 6.625532 ATGGAAAGGCAAAAGGTAATCAAT 57.374 33.333 0.00 0.00 0.00 2.57
788 813 6.432403 AATGGAAAGGCAAAAGGTAATCAA 57.568 33.333 0.00 0.00 0.00 2.57
789 814 5.046663 GGAATGGAAAGGCAAAAGGTAATCA 60.047 40.000 0.00 0.00 0.00 2.57
790 815 5.187772 AGGAATGGAAAGGCAAAAGGTAATC 59.812 40.000 0.00 0.00 0.00 1.75
791 816 5.093677 AGGAATGGAAAGGCAAAAGGTAAT 58.906 37.500 0.00 0.00 0.00 1.89
792 817 4.488770 AGGAATGGAAAGGCAAAAGGTAA 58.511 39.130 0.00 0.00 0.00 2.85
793 818 4.126520 AGGAATGGAAAGGCAAAAGGTA 57.873 40.909 0.00 0.00 0.00 3.08
794 819 2.976440 AGGAATGGAAAGGCAAAAGGT 58.024 42.857 0.00 0.00 0.00 3.50
795 820 5.682234 ATAAGGAATGGAAAGGCAAAAGG 57.318 39.130 0.00 0.00 0.00 3.11
796 821 6.939622 AGAATAAGGAATGGAAAGGCAAAAG 58.060 36.000 0.00 0.00 0.00 2.27
797 822 6.350110 CGAGAATAAGGAATGGAAAGGCAAAA 60.350 38.462 0.00 0.00 0.00 2.44
798 823 5.125417 CGAGAATAAGGAATGGAAAGGCAAA 59.875 40.000 0.00 0.00 0.00 3.68
799 824 4.640201 CGAGAATAAGGAATGGAAAGGCAA 59.360 41.667 0.00 0.00 0.00 4.52
800 825 4.199310 CGAGAATAAGGAATGGAAAGGCA 58.801 43.478 0.00 0.00 0.00 4.75
801 826 4.200092 ACGAGAATAAGGAATGGAAAGGC 58.800 43.478 0.00 0.00 0.00 4.35
802 827 6.759497 AAACGAGAATAAGGAATGGAAAGG 57.241 37.500 0.00 0.00 0.00 3.11
803 828 7.251281 GGAAAACGAGAATAAGGAATGGAAAG 58.749 38.462 0.00 0.00 0.00 2.62
804 829 6.152154 GGGAAAACGAGAATAAGGAATGGAAA 59.848 38.462 0.00 0.00 0.00 3.13
805 830 5.650703 GGGAAAACGAGAATAAGGAATGGAA 59.349 40.000 0.00 0.00 0.00 3.53
815 840 2.159057 GCTACCGGGGAAAACGAGAATA 60.159 50.000 6.32 0.00 0.00 1.75
817 842 0.037046 GCTACCGGGGAAAACGAGAA 60.037 55.000 6.32 0.00 0.00 2.87
827 852 0.744771 GCTCAAAAGAGCTACCGGGG 60.745 60.000 6.32 0.00 44.31 5.73
838 863 4.453478 TGTTGCTATGTCAGAGCTCAAAAG 59.547 41.667 19.60 5.42 40.76 2.27
856 881 4.508662 ACCTAGCTAGATTGTCTTGTTGC 58.491 43.478 22.70 0.00 0.00 4.17
872 897 5.539979 GGTATTGCCTAAGAGTAACCTAGC 58.460 45.833 0.00 0.00 0.00 3.42
908 933 4.638304 AGTTAAGAGTACGGCAAATGTGT 58.362 39.130 0.00 0.00 0.00 3.72
927 952 9.634021 ACCTTCAAGATAAGAAGAAAAAGAGTT 57.366 29.630 4.61 0.00 44.00 3.01
949 974 3.182152 AGGGCAACTATGTGACTACCTT 58.818 45.455 0.00 0.00 0.00 3.50
964 989 2.171448 GCAGAGAGGAGAAATAGGGCAA 59.829 50.000 0.00 0.00 0.00 4.52
968 993 4.836825 TGTTTGCAGAGAGGAGAAATAGG 58.163 43.478 0.00 0.00 0.00 2.57
980 1005 7.012610 TGTCCATTATCACATATGTTTGCAGAG 59.987 37.037 5.37 0.00 0.00 3.35
1076 1101 7.485595 TGCACAAGAATTATTCGTGATGAATTG 59.514 33.333 23.33 12.92 45.06 2.32
1082 1107 6.741992 TCTTGCACAAGAATTATTCGTGAT 57.258 33.333 23.33 8.45 43.79 3.06
1225 1333 5.186256 TGTGATCTGGTTATGCCCTTAAA 57.814 39.130 0.00 0.00 36.04 1.52
1251 1359 4.473477 ACACTTTAGCCACTCATCTACC 57.527 45.455 0.00 0.00 0.00 3.18
1275 1383 5.064707 TGTCTTCAGTCTAAAACAAGCACAC 59.935 40.000 0.00 0.00 0.00 3.82
1360 1468 6.665680 AGGGATACTATGTACATTAGCTGAGG 59.334 42.308 14.77 0.00 0.00 3.86
1395 1503 5.972107 AGTTTGATCATTCCTCAGTTTGG 57.028 39.130 0.00 0.00 0.00 3.28
1550 1659 4.879104 AGACTAGTTTAGGTCGTGATCG 57.121 45.455 0.00 0.00 37.52 3.69
1556 1665 6.090898 CACATTTCCAAGACTAGTTTAGGTCG 59.909 42.308 0.00 0.00 37.52 4.79
1557 1666 6.935208 ACACATTTCCAAGACTAGTTTAGGTC 59.065 38.462 0.00 0.00 0.00 3.85
1560 1669 7.359264 CGTCACACATTTCCAAGACTAGTTTAG 60.359 40.741 0.00 0.00 0.00 1.85
1563 1672 4.750098 CGTCACACATTTCCAAGACTAGTT 59.250 41.667 0.00 0.00 0.00 2.24
1565 1674 4.307432 ACGTCACACATTTCCAAGACTAG 58.693 43.478 0.00 0.00 0.00 2.57
1567 1676 3.194005 ACGTCACACATTTCCAAGACT 57.806 42.857 0.00 0.00 0.00 3.24
1597 1706 5.530543 TGTGACAATTCTGAATGCAGTACAA 59.469 36.000 3.22 0.00 42.84 2.41
1663 1774 3.373439 GCATTCGTTCAGAGAGCAAATCT 59.627 43.478 0.00 0.00 42.61 2.40
1676 1787 2.546778 TCATAAGGTCCGCATTCGTTC 58.453 47.619 0.00 0.00 0.00 3.95
1677 1788 2.684001 TCATAAGGTCCGCATTCGTT 57.316 45.000 0.00 0.00 0.00 3.85
1679 1790 5.621422 CAATTATCATAAGGTCCGCATTCG 58.379 41.667 0.00 0.00 0.00 3.34
1682 1793 4.655963 AGCAATTATCATAAGGTCCGCAT 58.344 39.130 0.00 0.00 0.00 4.73
1685 1796 7.099764 ACATAGAGCAATTATCATAAGGTCCG 58.900 38.462 0.00 0.00 0.00 4.79
1688 1799 9.851686 TGAAACATAGAGCAATTATCATAAGGT 57.148 29.630 0.00 0.00 0.00 3.50
1699 1810 5.748402 TCATCCACTGAAACATAGAGCAAT 58.252 37.500 0.00 0.00 0.00 3.56
1742 1853 0.250901 GGTTCATGCTGTGGTGGTCT 60.251 55.000 0.00 0.00 0.00 3.85
1835 1946 1.810794 GCCATGTCTCTCTCAGCCATG 60.811 57.143 0.00 0.00 0.00 3.66
1967 2078 1.847798 CTGGGTTGAATCCGGTCCCA 61.848 60.000 0.00 10.23 44.76 4.37
1972 2083 0.839946 AGATCCTGGGTTGAATCCGG 59.160 55.000 0.00 0.00 0.00 5.14
2084 2195 3.496130 CGTCTGATATGTGCATTTCCCTC 59.504 47.826 0.00 0.00 0.00 4.30
2246 2357 2.047274 ACACCAGACATTCCGGCG 60.047 61.111 0.00 0.00 0.00 6.46
3044 3182 9.944663 ACAACTGCAACGTAATAATAATAATGG 57.055 29.630 0.00 0.00 0.00 3.16
3068 4366 1.196581 CGATGATGGCAACGTTGAACA 59.803 47.619 31.62 26.43 42.51 3.18
3167 4466 2.176273 CGGGAGCATTTCGAGCCAG 61.176 63.158 0.00 0.00 0.00 4.85
3174 4473 2.038269 TTCACGCCGGGAGCATTTC 61.038 57.895 2.18 0.00 44.04 2.17
3184 4483 4.860907 AGTAGTATTTTACTGTTCACGCCG 59.139 41.667 0.00 0.00 39.81 6.46
3213 4512 8.066595 GCATTTTACATGCACAACAAACATTTA 58.933 29.630 0.00 0.00 44.00 1.40
3301 4660 1.063327 TTTGGTGTGTTTGCTCGCG 59.937 52.632 0.00 0.00 0.00 5.87
3303 4662 2.490328 ATGTTTGGTGTGTTTGCTCG 57.510 45.000 0.00 0.00 0.00 5.03
3375 4744 6.720288 TCCCGGGTTAACAATAGATTCAAAAA 59.280 34.615 22.86 0.00 0.00 1.94
3376 4745 6.246919 TCCCGGGTTAACAATAGATTCAAAA 58.753 36.000 22.86 0.00 0.00 2.44
3377 4746 5.817784 TCCCGGGTTAACAATAGATTCAAA 58.182 37.500 22.86 0.00 0.00 2.69
3378 4747 5.433526 CTCCCGGGTTAACAATAGATTCAA 58.566 41.667 22.86 0.00 0.00 2.69
3379 4748 4.685030 GCTCCCGGGTTAACAATAGATTCA 60.685 45.833 22.86 0.00 0.00 2.57
3380 4749 3.813724 GCTCCCGGGTTAACAATAGATTC 59.186 47.826 22.86 0.00 0.00 2.52
3381 4750 3.201266 TGCTCCCGGGTTAACAATAGATT 59.799 43.478 22.86 0.00 0.00 2.40
3382 4751 2.775384 TGCTCCCGGGTTAACAATAGAT 59.225 45.455 22.86 0.00 0.00 1.98
3383 4752 2.189676 TGCTCCCGGGTTAACAATAGA 58.810 47.619 22.86 0.00 0.00 1.98
3384 4753 2.702592 TGCTCCCGGGTTAACAATAG 57.297 50.000 22.86 8.97 0.00 1.73
3385 4754 3.655615 AATGCTCCCGGGTTAACAATA 57.344 42.857 22.86 0.00 0.00 1.90
3386 4755 2.495669 CAAATGCTCCCGGGTTAACAAT 59.504 45.455 22.86 4.96 0.00 2.71
3387 4756 1.889829 CAAATGCTCCCGGGTTAACAA 59.110 47.619 22.86 0.00 0.00 2.83
3388 4757 1.074084 TCAAATGCTCCCGGGTTAACA 59.926 47.619 22.86 14.85 0.00 2.41
3389 4758 1.743394 CTCAAATGCTCCCGGGTTAAC 59.257 52.381 22.86 9.13 0.00 2.01
3397 4766 2.631012 ATCCGGGCTCAAATGCTCCC 62.631 60.000 0.00 0.00 35.42 4.30
3412 4781 7.203218 TGTCAGATATGAAGTTTCTACATCCG 58.797 38.462 0.00 0.00 0.00 4.18
3415 4784 8.200792 GGTCTGTCAGATATGAAGTTTCTACAT 58.799 37.037 5.68 0.00 0.00 2.29
3429 4798 3.757947 TTCCCTCTGGTCTGTCAGATA 57.242 47.619 5.68 0.00 42.19 1.98
3433 4802 2.777692 ACTTTTTCCCTCTGGTCTGTCA 59.222 45.455 0.00 0.00 0.00 3.58
3435 4804 2.158608 CCACTTTTTCCCTCTGGTCTGT 60.159 50.000 0.00 0.00 0.00 3.41
3437 4806 2.373502 CTCCACTTTTTCCCTCTGGTCT 59.626 50.000 0.00 0.00 0.00 3.85
3438 4807 2.372172 TCTCCACTTTTTCCCTCTGGTC 59.628 50.000 0.00 0.00 0.00 4.02
3439 4808 2.418669 TCTCCACTTTTTCCCTCTGGT 58.581 47.619 0.00 0.00 0.00 4.00
3440 4809 3.350833 CATCTCCACTTTTTCCCTCTGG 58.649 50.000 0.00 0.00 0.00 3.86
3445 4821 1.923356 TGCCATCTCCACTTTTTCCC 58.077 50.000 0.00 0.00 0.00 3.97
3472 4848 2.027192 ACACATTCAGTAGACGGGCATT 60.027 45.455 0.00 0.00 0.00 3.56
3473 4849 1.555075 ACACATTCAGTAGACGGGCAT 59.445 47.619 0.00 0.00 0.00 4.40
3474 4850 0.973632 ACACATTCAGTAGACGGGCA 59.026 50.000 0.00 0.00 0.00 5.36
3533 4909 1.691976 CTACAGGTTCTGTGGTGGTGA 59.308 52.381 10.46 0.00 45.01 4.02
3595 4971 3.892284 TGTTGTTGTTACCTCCATGTGT 58.108 40.909 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.