Multiple sequence alignment - TraesCS7D01G060400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G060400 chr7D 100.000 7210 0 0 1 7210 32937887 32945096 0.000000e+00 13315.0
1 TraesCS7D01G060400 chr7D 100.000 696 0 0 7515 8210 32945401 32946096 0.000000e+00 1286.0
2 TraesCS7D01G060400 chr7D 79.688 448 56 16 753 1189 632552932 632552509 2.900000e-74 291.0
3 TraesCS7D01G060400 chr7D 83.962 318 21 17 35 331 126659021 126658713 2.260000e-70 278.0
4 TraesCS7D01G060400 chr7D 83.544 316 25 14 35 329 553073185 553073494 3.780000e-68 270.0
5 TraesCS7D01G060400 chr7D 83.706 313 22 15 35 330 80511047 80511347 1.360000e-67 268.0
6 TraesCS7D01G060400 chr7A 94.263 2841 144 12 3946 6780 33188878 33191705 0.000000e+00 4325.0
7 TraesCS7D01G060400 chr7A 90.450 2199 102 40 1795 3927 33186737 33188893 0.000000e+00 2798.0
8 TraesCS7D01G060400 chr7A 88.161 794 53 26 998 1761 33185969 33186751 0.000000e+00 907.0
9 TraesCS7D01G060400 chr7A 83.951 729 49 34 7524 8210 33192251 33192953 3.230000e-178 636.0
10 TraesCS7D01G060400 chr7A 94.236 399 20 1 6815 7210 33191783 33192181 2.530000e-169 606.0
11 TraesCS7D01G060400 chr7A 81.399 586 63 30 396 964 33185416 33185972 3.520000e-118 436.0
12 TraesCS7D01G060400 chr7A 93.333 60 2 2 3 61 439728881 439728939 4.080000e-13 87.9
13 TraesCS7D01G060400 chr4A 94.163 2844 135 16 3946 6780 692956513 692959334 0.000000e+00 4303.0
14 TraesCS7D01G060400 chr4A 91.367 1587 83 27 1796 3353 692954229 692955790 0.000000e+00 2122.0
15 TraesCS7D01G060400 chr4A 93.761 593 25 6 3344 3927 692955939 692956528 0.000000e+00 880.0
16 TraesCS7D01G060400 chr4A 86.245 807 62 21 988 1760 692953446 692954237 0.000000e+00 830.0
17 TraesCS7D01G060400 chr4A 92.099 405 26 6 6806 7210 692959404 692959802 4.300000e-157 566.0
18 TraesCS7D01G060400 chr4A 87.288 472 38 10 7518 7976 692959859 692960321 3.400000e-143 520.0
19 TraesCS7D01G060400 chr4A 78.807 637 45 33 338 922 692952814 692953412 6.100000e-91 346.0
20 TraesCS7D01G060400 chr4A 85.165 182 17 9 8032 8203 692960339 692960520 2.350000e-40 178.0
21 TraesCS7D01G060400 chr5D 88.968 281 16 8 3 277 390366003 390365732 4.750000e-87 333.0
22 TraesCS7D01G060400 chr5D 100.000 29 0 0 6430 6458 191903288 191903316 4.000000e-03 54.7
23 TraesCS7D01G060400 chr3D 85.260 346 23 15 3 329 601085657 601085993 1.710000e-86 331.0
24 TraesCS7D01G060400 chr3D 86.454 251 21 8 35 277 513611380 513611135 6.320000e-66 263.0
25 TraesCS7D01G060400 chr3D 86.047 172 14 7 1048 1216 141392276 141392112 8.470000e-40 176.0
26 TraesCS7D01G060400 chr2D 88.652 282 18 9 3 277 619442359 619442085 1.710000e-86 331.0
27 TraesCS7D01G060400 chr2D 84.726 347 24 18 3 332 36547608 36547942 3.700000e-83 320.0
28 TraesCS7D01G060400 chr2B 93.137 204 14 0 6834 7037 739765340 739765137 4.820000e-77 300.0
29 TraesCS7D01G060400 chr2B 86.628 172 13 6 1048 1216 132287173 132287009 1.820000e-41 182.0
30 TraesCS7D01G060400 chr2B 91.667 60 2 2 3 61 444616814 444616871 6.830000e-11 80.5
31 TraesCS7D01G060400 chr1D 85.209 311 24 12 35 328 355673726 355674031 4.820000e-77 300.0
32 TraesCS7D01G060400 chr4B 93.103 203 14 0 6834 7036 61827449 61827247 1.730000e-76 298.0
33 TraesCS7D01G060400 chr4B 92.818 181 7 3 681 861 657628373 657628199 2.940000e-64 257.0
34 TraesCS7D01G060400 chr6B 93.500 200 12 1 6834 7033 576450420 576450618 6.230000e-76 296.0
35 TraesCS7D01G060400 chr5B 93.878 196 12 0 6834 7029 524561545 524561350 6.230000e-76 296.0
36 TraesCS7D01G060400 chr5B 87.135 171 14 3 1048 1216 255674984 255675148 3.910000e-43 187.0
37 TraesCS7D01G060400 chr5B 94.231 52 3 0 10 61 562216514 562216463 6.830000e-11 80.5
38 TraesCS7D01G060400 chr5B 100.000 29 0 0 6430 6458 196237743 196237771 4.000000e-03 54.7
39 TraesCS7D01G060400 chr3B 90.179 224 20 1 6816 7037 668451275 668451498 2.900000e-74 291.0
40 TraesCS7D01G060400 chr3B 93.299 194 13 0 6834 7027 41752389 41752582 3.750000e-73 287.0
41 TraesCS7D01G060400 chr3B 91.667 204 17 0 6834 7037 575626344 575626547 4.850000e-72 283.0
42 TraesCS7D01G060400 chr6D 77.918 317 68 2 6382 6697 424830184 424830499 6.500000e-46 196.0
43 TraesCS7D01G060400 chr6A 77.603 317 69 2 6382 6697 569692120 569692435 3.020000e-44 191.0
44 TraesCS7D01G060400 chr7B 86.932 176 14 6 1048 1221 408951261 408951429 1.090000e-43 189.0
45 TraesCS7D01G060400 chr1B 86.932 176 14 8 1048 1221 16782416 16782248 1.090000e-43 189.0
46 TraesCS7D01G060400 chr3A 91.011 89 5 3 1139 1225 748274240 748274153 5.210000e-22 117.0
47 TraesCS7D01G060400 chr3A 93.220 59 4 0 3 61 556370129 556370187 4.080000e-13 87.9
48 TraesCS7D01G060400 chr5A 100.000 29 0 0 6430 6458 229926033 229926005 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G060400 chr7D 32937887 32946096 8209 False 7300.500 13315 100.000000 1 8210 2 chr7D.!!$F3 8209
1 TraesCS7D01G060400 chr7A 33185416 33192953 7537 False 1618.000 4325 88.743333 396 8210 6 chr7A.!!$F2 7814
2 TraesCS7D01G060400 chr4A 692952814 692960520 7706 False 1218.125 4303 88.611875 338 8203 8 chr4A.!!$F1 7865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.034337 ACCGAAGAAGCGCTGGTTAA 59.966 50.000 12.58 0.00 0.00 2.01 F
330 331 0.035739 GGTTAACCAGTTGCTCCCGA 59.964 55.000 20.12 0.00 35.64 5.14 F
966 1034 0.043485 GGAGAGAGGGGAAGGAAGGT 59.957 60.000 0.00 0.00 0.00 3.50 F
980 1048 0.108019 GAAGGTCAGTTTGGGGTCGT 59.892 55.000 0.00 0.00 0.00 4.34 F
1918 2042 0.172803 CCTGCTGGATTTGCTCTTGC 59.827 55.000 2.92 0.00 35.98 4.01 F
2446 2612 0.320683 GTCAAAGCATGGTTTGGGGC 60.321 55.000 36.75 26.51 37.89 5.80 F
3714 4071 0.645496 TAGTAGGGCCCATTCCTCCA 59.355 55.000 27.56 0.00 35.92 3.86 F
5273 5639 2.110578 AGTTTTTGTTTGCCAGCTCCT 58.889 42.857 0.00 0.00 0.00 3.69 F
6299 6665 0.038251 TGTCTCACACGCATCTGTCC 60.038 55.000 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1780 0.107945 GGAGTGATGGTGCTCTGGTC 60.108 60.000 0.00 0.0 32.67 4.02 R
1687 1808 0.692419 GAAGATGCAGAGGAGGGGGA 60.692 60.000 0.00 0.0 0.00 4.81 R
2424 2588 0.321346 CCAAACCATGCTTTGACCCC 59.679 55.000 13.91 0.0 33.61 4.95 R
2559 2733 1.562942 TCTTCAGAATCCTGCAGCCAT 59.437 47.619 8.66 0.0 40.20 4.40 R
3714 4071 1.276622 AGGACAGGTTGCCGAGTATT 58.723 50.000 0.00 0.0 0.00 1.89 R
4176 4533 1.068333 CCCTCAAGATTGTTGTTGGCG 60.068 52.381 0.00 0.0 0.00 5.69 R
5677 6043 0.666913 AGATGATGCAAGCAATCGCC 59.333 50.000 0.00 0.0 33.49 5.54 R
6401 6767 0.036732 GAGGGTTGCAGTCATGGTGA 59.963 55.000 0.00 0.0 0.00 4.02 R
7590 8004 0.037160 CGCCATCCATCCATCCATCA 59.963 55.000 0.00 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 2.619557 CGTTGTTTCGCGCAAAATTT 57.380 40.000 8.75 0.00 0.00 1.82
113 114 2.950107 CGTTGTTTCGCGCAAAATTTT 58.050 38.095 8.75 0.00 0.00 1.82
114 115 3.337984 CGTTGTTTCGCGCAAAATTTTT 58.662 36.364 8.75 0.00 0.00 1.94
132 133 2.923605 TTTTGTTTGGTCGAAACGCT 57.076 40.000 6.05 0.00 46.15 5.07
133 134 4.352600 TTTTTGTTTGGTCGAAACGCTA 57.647 36.364 6.05 0.00 46.15 4.26
134 135 4.352600 TTTTGTTTGGTCGAAACGCTAA 57.647 36.364 6.05 0.00 46.15 3.09
135 136 3.595709 TTGTTTGGTCGAAACGCTAAG 57.404 42.857 6.05 0.00 46.15 2.18
136 137 1.868498 TGTTTGGTCGAAACGCTAAGG 59.132 47.619 6.05 0.00 46.15 2.69
137 138 2.137523 GTTTGGTCGAAACGCTAAGGA 58.862 47.619 0.00 0.00 34.87 3.36
138 139 2.529780 TTGGTCGAAACGCTAAGGAA 57.470 45.000 0.00 0.00 0.00 3.36
139 140 2.074547 TGGTCGAAACGCTAAGGAAG 57.925 50.000 0.00 0.00 0.00 3.46
140 141 1.614903 TGGTCGAAACGCTAAGGAAGA 59.385 47.619 0.00 0.00 0.00 2.87
141 142 1.991264 GGTCGAAACGCTAAGGAAGAC 59.009 52.381 0.00 0.00 0.00 3.01
142 143 1.991264 GTCGAAACGCTAAGGAAGACC 59.009 52.381 0.00 0.00 0.00 3.85
143 144 0.989890 CGAAACGCTAAGGAAGACCG 59.010 55.000 0.00 0.00 41.83 4.79
144 145 1.356938 GAAACGCTAAGGAAGACCGG 58.643 55.000 0.00 0.00 41.83 5.28
145 146 0.036671 AAACGCTAAGGAAGACCGGG 60.037 55.000 6.32 0.00 41.83 5.73
146 147 0.901580 AACGCTAAGGAAGACCGGGA 60.902 55.000 6.32 0.00 41.83 5.14
147 148 0.901580 ACGCTAAGGAAGACCGGGAA 60.902 55.000 6.32 0.00 41.83 3.97
148 149 0.248289 CGCTAAGGAAGACCGGGAAA 59.752 55.000 6.32 0.00 41.83 3.13
149 150 1.338389 CGCTAAGGAAGACCGGGAAAA 60.338 52.381 6.32 0.00 41.83 2.29
150 151 2.786777 GCTAAGGAAGACCGGGAAAAA 58.213 47.619 6.32 0.00 41.83 1.94
201 202 6.477669 AAAAACCGTTTAAAAAGCCGAAAA 57.522 29.167 0.00 0.00 0.00 2.29
202 203 5.453281 AAACCGTTTAAAAAGCCGAAAAC 57.547 34.783 0.00 0.00 0.00 2.43
204 205 3.130797 CGTTTAAAAAGCCGAAAACGC 57.869 42.857 6.30 0.00 44.94 4.84
205 206 2.406245 CGTTTAAAAAGCCGAAAACGCG 60.406 45.455 3.53 3.53 44.94 6.01
206 207 2.471862 TTAAAAAGCCGAAAACGCGT 57.528 40.000 5.58 5.58 0.00 6.01
207 208 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
208 209 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
209 210 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
212 213 4.003011 CCGAAAACGCGTGCGGAA 62.003 61.111 31.93 0.00 46.29 4.30
213 214 2.052941 CGAAAACGCGTGCGGAAA 60.053 55.556 14.98 0.00 44.69 3.13
214 215 1.651730 CGAAAACGCGTGCGGAAAA 60.652 52.632 14.98 0.00 44.69 2.29
215 216 1.194896 CGAAAACGCGTGCGGAAAAA 61.195 50.000 14.98 0.00 44.69 1.94
216 217 1.125270 GAAAACGCGTGCGGAAAAAT 58.875 45.000 14.98 0.00 44.69 1.82
217 218 2.308811 GAAAACGCGTGCGGAAAAATA 58.691 42.857 14.98 0.00 44.69 1.40
218 219 2.402640 AAACGCGTGCGGAAAAATAA 57.597 40.000 14.98 0.00 44.69 1.40
219 220 2.622546 AACGCGTGCGGAAAAATAAT 57.377 40.000 14.98 0.00 44.69 1.28
220 221 2.622546 ACGCGTGCGGAAAAATAATT 57.377 40.000 12.93 0.00 44.69 1.40
221 222 3.743567 ACGCGTGCGGAAAAATAATTA 57.256 38.095 12.93 0.00 44.69 1.40
222 223 4.080969 ACGCGTGCGGAAAAATAATTAA 57.919 36.364 12.93 0.00 44.69 1.40
223 224 4.474113 ACGCGTGCGGAAAAATAATTAAA 58.526 34.783 12.93 0.00 44.69 1.52
224 225 4.916249 ACGCGTGCGGAAAAATAATTAAAA 59.084 33.333 12.93 0.00 44.69 1.52
225 226 5.401674 ACGCGTGCGGAAAAATAATTAAAAA 59.598 32.000 12.93 0.00 44.69 1.94
254 255 3.550656 GGAAACGTCCAGAGCACG 58.449 61.111 0.00 0.00 44.26 5.34
255 256 1.006571 GGAAACGTCCAGAGCACGA 60.007 57.895 0.07 0.00 44.26 4.35
256 257 1.282930 GGAAACGTCCAGAGCACGAC 61.283 60.000 0.07 0.00 44.26 4.34
257 258 0.596600 GAAACGTCCAGAGCACGACA 60.597 55.000 0.07 0.00 39.75 4.35
258 259 0.874607 AAACGTCCAGAGCACGACAC 60.875 55.000 0.07 0.00 39.75 3.67
259 260 2.801162 CGTCCAGAGCACGACACG 60.801 66.667 0.00 0.00 39.75 4.49
260 261 2.335369 GTCCAGAGCACGACACGT 59.665 61.111 0.00 0.00 42.36 4.49
271 272 2.742372 GACACGTGGCGAATGGCT 60.742 61.111 21.57 0.00 42.94 4.75
272 273 3.027170 GACACGTGGCGAATGGCTG 62.027 63.158 21.57 0.00 42.94 4.85
273 274 2.741985 CACGTGGCGAATGGCTGA 60.742 61.111 7.95 0.00 42.94 4.26
274 275 2.434884 ACGTGGCGAATGGCTGAG 60.435 61.111 0.00 0.00 42.94 3.35
275 276 2.125552 CGTGGCGAATGGCTGAGA 60.126 61.111 0.00 0.00 42.94 3.27
276 277 2.169789 CGTGGCGAATGGCTGAGAG 61.170 63.158 0.00 0.00 42.94 3.20
277 278 1.078848 GTGGCGAATGGCTGAGAGT 60.079 57.895 0.00 0.00 42.94 3.24
278 279 1.086634 GTGGCGAATGGCTGAGAGTC 61.087 60.000 0.00 0.00 42.94 3.36
279 280 1.219124 GGCGAATGGCTGAGAGTCA 59.781 57.895 0.00 0.00 42.94 3.41
280 281 1.086634 GGCGAATGGCTGAGAGTCAC 61.087 60.000 0.00 0.00 42.94 3.67
281 282 1.416813 GCGAATGGCTGAGAGTCACG 61.417 60.000 0.00 0.00 39.11 4.35
282 283 0.803768 CGAATGGCTGAGAGTCACGG 60.804 60.000 0.00 0.00 29.65 4.94
283 284 0.247736 GAATGGCTGAGAGTCACGGT 59.752 55.000 0.00 0.00 29.65 4.83
284 285 0.687354 AATGGCTGAGAGTCACGGTT 59.313 50.000 0.00 0.00 29.65 4.44
285 286 0.687354 ATGGCTGAGAGTCACGGTTT 59.313 50.000 0.00 0.00 29.65 3.27
286 287 0.468226 TGGCTGAGAGTCACGGTTTT 59.532 50.000 0.00 0.00 0.00 2.43
287 288 1.134220 TGGCTGAGAGTCACGGTTTTT 60.134 47.619 0.00 0.00 0.00 1.94
302 303 3.309052 TTTTTGCGAGGCTACCGAA 57.691 47.368 0.00 0.00 0.00 4.30
303 304 1.153353 TTTTTGCGAGGCTACCGAAG 58.847 50.000 0.00 0.00 0.00 3.79
304 305 0.319083 TTTTGCGAGGCTACCGAAGA 59.681 50.000 0.00 0.00 0.00 2.87
305 306 0.319083 TTTGCGAGGCTACCGAAGAA 59.681 50.000 0.00 0.00 0.00 2.52
306 307 0.108804 TTGCGAGGCTACCGAAGAAG 60.109 55.000 0.00 0.00 0.00 2.85
307 308 1.878975 GCGAGGCTACCGAAGAAGC 60.879 63.158 0.00 0.00 35.96 3.86
308 309 1.586564 CGAGGCTACCGAAGAAGCG 60.587 63.158 0.00 0.00 37.23 4.68
309 310 1.878975 GAGGCTACCGAAGAAGCGC 60.879 63.158 0.00 0.00 37.23 5.92
310 311 2.184579 GGCTACCGAAGAAGCGCT 59.815 61.111 2.64 2.64 37.23 5.92
311 312 2.167861 GGCTACCGAAGAAGCGCTG 61.168 63.158 12.58 0.00 37.23 5.18
312 313 2.167861 GCTACCGAAGAAGCGCTGG 61.168 63.158 12.58 10.45 0.00 4.85
313 314 1.215647 CTACCGAAGAAGCGCTGGT 59.784 57.895 19.01 19.01 36.72 4.00
314 315 0.389948 CTACCGAAGAAGCGCTGGTT 60.390 55.000 20.05 12.55 34.18 3.67
315 316 0.889994 TACCGAAGAAGCGCTGGTTA 59.110 50.000 20.05 5.55 34.18 2.85
316 317 0.034337 ACCGAAGAAGCGCTGGTTAA 59.966 50.000 12.58 0.00 0.00 2.01
317 318 0.442699 CCGAAGAAGCGCTGGTTAAC 59.557 55.000 12.58 0.00 0.00 2.01
318 319 0.442699 CGAAGAAGCGCTGGTTAACC 59.557 55.000 18.27 18.27 0.00 2.85
319 320 1.519408 GAAGAAGCGCTGGTTAACCA 58.481 50.000 25.58 25.58 45.30 3.67
328 329 3.737702 TGGTTAACCAGTTGCTCCC 57.262 52.632 23.69 0.00 42.01 4.30
329 330 0.250553 TGGTTAACCAGTTGCTCCCG 60.251 55.000 23.69 0.00 42.01 5.14
330 331 0.035739 GGTTAACCAGTTGCTCCCGA 59.964 55.000 20.12 0.00 35.64 5.14
331 332 1.543871 GGTTAACCAGTTGCTCCCGAA 60.544 52.381 20.12 0.00 35.64 4.30
332 333 1.534163 GTTAACCAGTTGCTCCCGAAC 59.466 52.381 0.00 0.00 0.00 3.95
333 334 0.035739 TAACCAGTTGCTCCCGAACC 59.964 55.000 0.00 0.00 0.00 3.62
334 335 1.990160 AACCAGTTGCTCCCGAACCA 61.990 55.000 0.00 0.00 0.00 3.67
335 336 1.228124 CCAGTTGCTCCCGAACCAA 60.228 57.895 0.00 0.00 0.00 3.67
336 337 0.609131 CCAGTTGCTCCCGAACCAAT 60.609 55.000 0.00 0.00 0.00 3.16
344 345 0.995803 TCCCGAACCAATCCAATCCA 59.004 50.000 0.00 0.00 0.00 3.41
371 372 2.868196 GCGAACGAGGCCTTTTCC 59.132 61.111 6.77 3.98 0.00 3.13
373 374 1.512156 GCGAACGAGGCCTTTTCCAA 61.512 55.000 6.77 0.00 0.00 3.53
375 376 0.596577 GAACGAGGCCTTTTCCAACC 59.403 55.000 6.77 0.00 0.00 3.77
376 377 0.185175 AACGAGGCCTTTTCCAACCT 59.815 50.000 6.77 0.00 34.43 3.50
377 378 0.185175 ACGAGGCCTTTTCCAACCTT 59.815 50.000 6.77 0.00 30.95 3.50
380 381 3.089284 CGAGGCCTTTTCCAACCTTATT 58.911 45.455 6.77 0.00 30.95 1.40
382 383 4.703093 CGAGGCCTTTTCCAACCTTATTAA 59.297 41.667 6.77 0.00 30.95 1.40
387 388 4.468510 CCTTTTCCAACCTTATTAACCCCC 59.531 45.833 0.00 0.00 0.00 5.40
388 389 5.338632 CTTTTCCAACCTTATTAACCCCCT 58.661 41.667 0.00 0.00 0.00 4.79
389 390 4.325084 TTCCAACCTTATTAACCCCCTG 57.675 45.455 0.00 0.00 0.00 4.45
403 404 4.815108 CCTGCCCCTAAACCCCGC 62.815 72.222 0.00 0.00 0.00 6.13
404 405 4.041762 CTGCCCCTAAACCCCGCA 62.042 66.667 0.00 0.00 0.00 5.69
405 406 3.577334 CTGCCCCTAAACCCCGCAA 62.577 63.158 0.00 0.00 0.00 4.85
406 407 2.043349 GCCCCTAAACCCCGCAAT 60.043 61.111 0.00 0.00 0.00 3.56
407 408 2.125326 GCCCCTAAACCCCGCAATC 61.125 63.158 0.00 0.00 0.00 2.67
408 409 1.822186 CCCCTAAACCCCGCAATCG 60.822 63.158 0.00 0.00 0.00 3.34
409 410 2.478033 CCCTAAACCCCGCAATCGC 61.478 63.158 0.00 0.00 0.00 4.58
411 412 0.179067 CCTAAACCCCGCAATCGCTA 60.179 55.000 0.00 0.00 35.30 4.26
414 415 0.606944 AAACCCCGCAATCGCTAACA 60.607 50.000 0.00 0.00 35.30 2.41
415 416 0.606944 AACCCCGCAATCGCTAACAA 60.607 50.000 0.00 0.00 35.30 2.83
416 417 1.024579 ACCCCGCAATCGCTAACAAG 61.025 55.000 0.00 0.00 35.30 3.16
417 418 1.024579 CCCCGCAATCGCTAACAAGT 61.025 55.000 0.00 0.00 35.30 3.16
442 450 3.775654 GCCCGCCTAGTCACAGCT 61.776 66.667 0.00 0.00 0.00 4.24
444 452 2.103143 CCGCCTAGTCACAGCTCG 59.897 66.667 0.00 0.00 0.00 5.03
448 456 1.140589 CCTAGTCACAGCTCGCCAG 59.859 63.158 0.00 0.00 0.00 4.85
452 460 1.735920 GTCACAGCTCGCCAGTCTG 60.736 63.158 0.00 0.00 32.83 3.51
462 479 4.031129 CCAGTCTGCAGCCTGGCT 62.031 66.667 29.33 17.22 41.65 4.75
465 482 2.222727 AGTCTGCAGCCTGGCTTCT 61.223 57.895 20.79 9.58 36.40 2.85
513 534 4.763646 CGGTAAAAGCCGCGGGGA 62.764 66.667 29.38 0.00 45.47 4.81
514 535 2.360225 GGTAAAAGCCGCGGGGAA 60.360 61.111 29.38 0.00 34.06 3.97
515 536 1.972752 GGTAAAAGCCGCGGGGAAA 60.973 57.895 29.38 0.00 34.06 3.13
520 541 4.699522 AGCCGCGGGGAAAGACAC 62.700 66.667 29.38 6.37 34.06 3.67
525 546 2.939261 GCGGGGAAAGACACGAGGA 61.939 63.158 0.00 0.00 0.00 3.71
543 564 0.110956 GACGTTCGAAAGGAAACGGC 60.111 55.000 15.51 5.58 36.14 5.68
544 565 1.154727 CGTTCGAAAGGAAACGGCG 60.155 57.895 4.80 4.80 36.14 6.46
545 566 1.824272 CGTTCGAAAGGAAACGGCGT 61.824 55.000 6.77 6.77 36.14 5.68
604 649 4.426313 GCGCCAGCCTTAACCCCT 62.426 66.667 0.00 0.00 37.42 4.79
605 650 2.438434 CGCCAGCCTTAACCCCTG 60.438 66.667 0.00 0.00 0.00 4.45
608 653 2.043953 CAGCCTTAACCCCTGCCC 60.044 66.667 0.00 0.00 0.00 5.36
609 654 3.728373 AGCCTTAACCCCTGCCCG 61.728 66.667 0.00 0.00 0.00 6.13
651 696 1.752310 CTTGGCACCACACACACCA 60.752 57.895 0.00 0.00 0.00 4.17
655 700 2.124901 CACCACACACACCACGGT 60.125 61.111 0.00 0.00 0.00 4.83
763 816 1.735018 TCGCCACGACAAATACATTGG 59.265 47.619 0.00 0.00 43.66 3.16
817 879 2.579400 TCCATCCATCCATCCATCCATC 59.421 50.000 0.00 0.00 0.00 3.51
933 1001 6.176896 AGGAGGTTTCTTGATTTCTTAGAGC 58.823 40.000 0.00 0.00 0.00 4.09
935 1003 4.393371 AGGTTTCTTGATTTCTTAGAGCGC 59.607 41.667 0.00 0.00 0.00 5.92
960 1028 3.532155 CGGCGGAGAGAGGGGAAG 61.532 72.222 0.00 0.00 0.00 3.46
961 1029 3.157949 GGCGGAGAGAGGGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
962 1030 2.042843 GCGGAGAGAGGGGAAGGA 60.043 66.667 0.00 0.00 0.00 3.36
963 1031 1.686110 GCGGAGAGAGGGGAAGGAA 60.686 63.158 0.00 0.00 0.00 3.36
964 1032 1.681486 GCGGAGAGAGGGGAAGGAAG 61.681 65.000 0.00 0.00 0.00 3.46
965 1033 1.045911 CGGAGAGAGGGGAAGGAAGG 61.046 65.000 0.00 0.00 0.00 3.46
966 1034 0.043485 GGAGAGAGGGGAAGGAAGGT 59.957 60.000 0.00 0.00 0.00 3.50
967 1035 1.491668 GAGAGAGGGGAAGGAAGGTC 58.508 60.000 0.00 0.00 0.00 3.85
968 1036 0.793617 AGAGAGGGGAAGGAAGGTCA 59.206 55.000 0.00 0.00 0.00 4.02
969 1037 1.199615 GAGAGGGGAAGGAAGGTCAG 58.800 60.000 0.00 0.00 0.00 3.51
970 1038 0.494095 AGAGGGGAAGGAAGGTCAGT 59.506 55.000 0.00 0.00 0.00 3.41
971 1039 1.132365 AGAGGGGAAGGAAGGTCAGTT 60.132 52.381 0.00 0.00 0.00 3.16
972 1040 1.705745 GAGGGGAAGGAAGGTCAGTTT 59.294 52.381 0.00 0.00 0.00 2.66
973 1041 1.425448 AGGGGAAGGAAGGTCAGTTTG 59.575 52.381 0.00 0.00 0.00 2.93
974 1042 1.547901 GGGGAAGGAAGGTCAGTTTGG 60.548 57.143 0.00 0.00 0.00 3.28
975 1043 1.547901 GGGAAGGAAGGTCAGTTTGGG 60.548 57.143 0.00 0.00 0.00 4.12
976 1044 1.547901 GGAAGGAAGGTCAGTTTGGGG 60.548 57.143 0.00 0.00 0.00 4.96
977 1045 1.145119 GAAGGAAGGTCAGTTTGGGGT 59.855 52.381 0.00 0.00 0.00 4.95
978 1046 0.771755 AGGAAGGTCAGTTTGGGGTC 59.228 55.000 0.00 0.00 0.00 4.46
979 1047 0.605589 GGAAGGTCAGTTTGGGGTCG 60.606 60.000 0.00 0.00 0.00 4.79
980 1048 0.108019 GAAGGTCAGTTTGGGGTCGT 59.892 55.000 0.00 0.00 0.00 4.34
981 1049 0.179029 AAGGTCAGTTTGGGGTCGTG 60.179 55.000 0.00 0.00 0.00 4.35
982 1050 2.258726 GGTCAGTTTGGGGTCGTGC 61.259 63.158 0.00 0.00 0.00 5.34
983 1051 2.280524 TCAGTTTGGGGTCGTGCG 60.281 61.111 0.00 0.00 0.00 5.34
984 1052 4.025401 CAGTTTGGGGTCGTGCGC 62.025 66.667 0.00 0.00 0.00 6.09
1065 1136 2.200337 GGCGGTTCTTGGGCTGTTT 61.200 57.895 0.00 0.00 0.00 2.83
1257 1363 0.692756 CTTCCTCCCTCCCCTCTTCC 60.693 65.000 0.00 0.00 0.00 3.46
1259 1365 1.383803 CCTCCCTCCCCTCTTCCTG 60.384 68.421 0.00 0.00 0.00 3.86
1261 1367 0.980231 CTCCCTCCCCTCTTCCTGTG 60.980 65.000 0.00 0.00 0.00 3.66
1262 1368 2.674220 CCCTCCCCTCTTCCTGTGC 61.674 68.421 0.00 0.00 0.00 4.57
1264 1370 1.621672 CCTCCCCTCTTCCTGTGCTC 61.622 65.000 0.00 0.00 0.00 4.26
1271 1377 0.411452 TCTTCCTGTGCTCCTCCTCT 59.589 55.000 0.00 0.00 0.00 3.69
1298 1404 2.257286 ATTGCGACGCCATGACAAGC 62.257 55.000 18.69 0.00 0.00 4.01
1408 1520 2.035155 TGCTTGCTCCTGCTGCAT 59.965 55.556 1.31 0.00 41.40 3.96
1448 1562 2.376518 TGTGCTTTTTCTCTCAGGGGAT 59.623 45.455 0.00 0.00 0.00 3.85
1449 1563 3.181429 TGTGCTTTTTCTCTCAGGGGATT 60.181 43.478 0.00 0.00 0.00 3.01
1467 1581 3.328050 GGATTGATTATCCCCTCGGTTCT 59.672 47.826 0.00 0.00 46.20 3.01
1472 1586 4.473559 TGATTATCCCCTCGGTTCTTTCTT 59.526 41.667 0.00 0.00 0.00 2.52
1492 1606 4.456911 TCTTGCACAACAAATGATCCTCTC 59.543 41.667 0.00 0.00 37.96 3.20
1504 1618 3.329386 TGATCCTCTCTTTGTTTCGCTG 58.671 45.455 0.00 0.00 0.00 5.18
1513 1627 5.238432 TCTCTTTGTTTCGCTGCTTAAATGA 59.762 36.000 0.00 0.00 0.00 2.57
1517 1631 5.933187 TGTTTCGCTGCTTAAATGAACTA 57.067 34.783 0.00 0.00 0.00 2.24
1518 1632 5.685841 TGTTTCGCTGCTTAAATGAACTAC 58.314 37.500 0.00 0.00 0.00 2.73
1519 1633 5.468746 TGTTTCGCTGCTTAAATGAACTACT 59.531 36.000 0.00 0.00 0.00 2.57
1520 1634 5.779806 TTCGCTGCTTAAATGAACTACTC 57.220 39.130 0.00 0.00 0.00 2.59
1556 1672 6.030548 TCTGACGACTGATTGATTTTCTCT 57.969 37.500 0.00 0.00 0.00 3.10
1601 1722 2.040278 CCTGTCAAATCTGAACCTGGGA 59.960 50.000 0.00 0.00 31.88 4.37
1656 1777 2.334838 CCCTACAGTTCGTGTAAGCAC 58.665 52.381 0.00 0.00 41.28 4.40
1659 1780 1.865865 ACAGTTCGTGTAAGCACCAG 58.134 50.000 0.00 0.00 42.39 4.00
1660 1781 1.411246 ACAGTTCGTGTAAGCACCAGA 59.589 47.619 0.00 0.00 42.39 3.86
1661 1782 1.792949 CAGTTCGTGTAAGCACCAGAC 59.207 52.381 0.00 0.00 42.39 3.51
1681 1802 1.229625 AGAGCACCATCACTCCCCA 60.230 57.895 0.00 0.00 33.18 4.96
1682 1803 0.622738 AGAGCACCATCACTCCCCAT 60.623 55.000 0.00 0.00 33.18 4.00
1683 1804 0.179034 GAGCACCATCACTCCCCATC 60.179 60.000 0.00 0.00 0.00 3.51
1687 1808 1.386485 CCATCACTCCCCATCCCCT 60.386 63.158 0.00 0.00 0.00 4.79
1689 1810 1.073397 ATCACTCCCCATCCCCTCC 60.073 63.158 0.00 0.00 0.00 4.30
1690 1811 2.644628 ATCACTCCCCATCCCCTCCC 62.645 65.000 0.00 0.00 0.00 4.30
1691 1812 4.124126 ACTCCCCATCCCCTCCCC 62.124 72.222 0.00 0.00 0.00 4.81
1692 1813 4.928520 CTCCCCATCCCCTCCCCC 62.929 77.778 0.00 0.00 0.00 5.40
1694 1815 4.928520 CCCCATCCCCTCCCCCTC 62.929 77.778 0.00 0.00 0.00 4.30
1695 1816 4.928520 CCCATCCCCTCCCCCTCC 62.929 77.778 0.00 0.00 0.00 4.30
1696 1817 3.795924 CCATCCCCTCCCCCTCCT 61.796 72.222 0.00 0.00 0.00 3.69
1697 1818 2.122189 CATCCCCTCCCCCTCCTC 60.122 72.222 0.00 0.00 0.00 3.71
1761 1882 0.178935 CCCATCCCCCTCTCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
1762 1883 0.859760 CCATCCCCCTCTCTCTCTCT 59.140 60.000 0.00 0.00 0.00 3.10
1763 1884 1.203050 CCATCCCCCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
1764 1885 1.782752 CATCCCCCTCTCTCTCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
1765 1886 1.518367 TCCCCCTCTCTCTCTCTCTC 58.482 60.000 0.00 0.00 0.00 3.20
1766 1887 1.010793 TCCCCCTCTCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
1767 1888 1.421646 CCCCCTCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1768 1889 2.412591 CCCCTCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
1769 1890 2.370189 CCCCTCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
1770 1891 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
1771 1892 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
1772 1893 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
1773 1894 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
1774 1895 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1775 1896 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1776 1897 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1777 1898 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1778 1899 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1779 1900 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1780 1901 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1781 1902 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1782 1903 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1783 1904 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1784 1905 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1785 1906 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1786 1907 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1787 1908 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1788 1909 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1789 1910 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1790 1911 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1791 1912 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1792 1913 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1793 1914 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1794 1915 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1795 1916 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1796 1917 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1797 1918 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1798 1919 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1799 1920 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1800 1921 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1801 1922 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1802 1923 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1803 1924 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1804 1925 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1902 2026 0.907704 TACCAGGCTACCACACCCTG 60.908 60.000 0.00 0.00 44.49 4.45
1905 2029 2.045926 GGCTACCACACCCTGCTG 60.046 66.667 0.00 0.00 0.00 4.41
1912 2036 1.588082 CACACCCTGCTGGATTTGC 59.412 57.895 11.88 0.00 38.00 3.68
1913 2037 0.896940 CACACCCTGCTGGATTTGCT 60.897 55.000 11.88 0.00 38.00 3.91
1914 2038 0.610232 ACACCCTGCTGGATTTGCTC 60.610 55.000 11.88 0.00 38.00 4.26
1915 2039 0.323178 CACCCTGCTGGATTTGCTCT 60.323 55.000 11.88 0.00 38.00 4.09
1916 2040 0.407139 ACCCTGCTGGATTTGCTCTT 59.593 50.000 11.88 0.00 38.00 2.85
1917 2041 0.815734 CCCTGCTGGATTTGCTCTTG 59.184 55.000 11.88 0.00 35.39 3.02
1918 2042 0.172803 CCTGCTGGATTTGCTCTTGC 59.827 55.000 2.92 0.00 35.98 4.01
1938 2062 8.298729 TCTTGCTGATTAGTTTATCTCTCTCA 57.701 34.615 0.00 0.00 0.00 3.27
1990 2131 1.073897 GGGAACAAGCTCACAGGCT 59.926 57.895 0.00 0.00 45.30 4.58
2044 2185 4.939439 CCTTAAAATACTTGTACGCCACCT 59.061 41.667 0.00 0.00 0.00 4.00
2073 2214 6.127253 CCGGGTCTTCTTTTATTGTCCTACTA 60.127 42.308 0.00 0.00 0.00 1.82
2074 2215 6.755607 CGGGTCTTCTTTTATTGTCCTACTAC 59.244 42.308 0.00 0.00 0.00 2.73
2075 2216 7.363617 CGGGTCTTCTTTTATTGTCCTACTACT 60.364 40.741 0.00 0.00 0.00 2.57
2360 2521 4.541705 TCACTTTTTCACCCATCTTTGGA 58.458 39.130 0.00 0.00 46.92 3.53
2375 2536 6.818142 CCATCTTTGGATTGTTTTGGGTTATC 59.182 38.462 0.00 0.00 46.92 1.75
2446 2612 0.320683 GTCAAAGCATGGTTTGGGGC 60.321 55.000 36.75 26.51 37.89 5.80
2464 2636 3.545703 GGGCTATAACAGTGCTGTGAAT 58.454 45.455 5.53 5.79 44.13 2.57
2465 2637 3.947834 GGGCTATAACAGTGCTGTGAATT 59.052 43.478 5.53 0.00 44.13 2.17
2478 2652 7.915397 CAGTGCTGTGAATTTAGTTTAAGTTGT 59.085 33.333 0.00 0.00 0.00 3.32
2493 2667 8.456471 AGTTTAAGTTGTTTCTCTGTGGTTTAC 58.544 33.333 0.00 0.00 0.00 2.01
2513 2687 2.549754 ACGGATTGCTGTCAAGTTTCTG 59.450 45.455 0.00 0.00 35.37 3.02
2529 2703 6.076981 AGTTTCTGTGGTTTAGAATGCTTG 57.923 37.500 0.00 0.00 34.42 4.01
2535 2709 7.168219 TCTGTGGTTTAGAATGCTTGAGTTAT 58.832 34.615 0.00 0.00 0.00 1.89
2544 2718 7.934855 AGAATGCTTGAGTTATGATGTTTCT 57.065 32.000 0.00 0.00 0.00 2.52
2675 2850 2.332117 ACCTTTCTTTCCCCGTGACTA 58.668 47.619 0.00 0.00 0.00 2.59
2679 2854 4.439968 CTTTCTTTCCCCGTGACTATACC 58.560 47.826 0.00 0.00 0.00 2.73
2688 2863 4.100498 CCCCGTGACTATACCTATTGTTGT 59.900 45.833 0.00 0.00 0.00 3.32
2734 2909 6.540083 TCTTCCTTTTCTTACCTACCCTTTG 58.460 40.000 0.00 0.00 0.00 2.77
2800 2975 5.397142 ACATTTTCCTTTTCTGCCTCATC 57.603 39.130 0.00 0.00 0.00 2.92
2809 2984 2.775911 TCTGCCTCATCTGGTTCTTG 57.224 50.000 0.00 0.00 0.00 3.02
3098 3278 4.096682 TGTGGTACTTGTAAGTTTTGTGCC 59.903 41.667 2.20 0.00 40.37 5.01
3250 3430 4.397417 AGCTTTGAGATTCTGTATGTTGCC 59.603 41.667 0.00 0.00 0.00 4.52
3265 3445 8.972458 TGTATGTTGCCTGCTAAGATTTTATA 57.028 30.769 0.00 0.00 0.00 0.98
3266 3446 9.056005 TGTATGTTGCCTGCTAAGATTTTATAG 57.944 33.333 0.00 0.00 0.00 1.31
3458 3800 7.038659 ACTTTAGCTTATCTGCACTCTTGTAG 58.961 38.462 0.00 0.00 36.82 2.74
3508 3858 7.528481 TGCTAAATGCTTGCATTTATCTTTG 57.472 32.000 29.25 21.49 43.37 2.77
3596 3952 2.135139 TGCTGTTCTGTGAGTAAAGCG 58.865 47.619 0.00 0.00 31.86 4.68
3614 3970 1.127582 GCGCAACTCTTTAGTCTGCAG 59.872 52.381 7.63 7.63 38.53 4.41
3714 4071 0.645496 TAGTAGGGCCCATTCCTCCA 59.355 55.000 27.56 0.00 35.92 3.86
3918 4275 5.746990 AGCTACCTGTAAGTGATTGTTCT 57.253 39.130 0.00 0.00 0.00 3.01
3919 4276 5.725362 AGCTACCTGTAAGTGATTGTTCTC 58.275 41.667 0.00 0.00 0.00 2.87
3920 4277 5.482175 AGCTACCTGTAAGTGATTGTTCTCT 59.518 40.000 0.00 0.00 0.00 3.10
3921 4278 5.578727 GCTACCTGTAAGTGATTGTTCTCTG 59.421 44.000 0.00 0.00 0.00 3.35
3922 4279 5.808366 ACCTGTAAGTGATTGTTCTCTGA 57.192 39.130 0.00 0.00 0.00 3.27
3923 4280 6.365970 ACCTGTAAGTGATTGTTCTCTGAT 57.634 37.500 0.00 0.00 0.00 2.90
3924 4281 6.169094 ACCTGTAAGTGATTGTTCTCTGATG 58.831 40.000 0.00 0.00 0.00 3.07
3925 4282 6.169094 CCTGTAAGTGATTGTTCTCTGATGT 58.831 40.000 0.00 0.00 0.00 3.06
3926 4283 6.652481 CCTGTAAGTGATTGTTCTCTGATGTT 59.348 38.462 0.00 0.00 0.00 2.71
3927 4284 7.148507 CCTGTAAGTGATTGTTCTCTGATGTTC 60.149 40.741 0.00 0.00 0.00 3.18
3928 4285 7.445121 TGTAAGTGATTGTTCTCTGATGTTCT 58.555 34.615 0.00 0.00 0.00 3.01
3929 4286 7.933577 TGTAAGTGATTGTTCTCTGATGTTCTT 59.066 33.333 0.00 0.00 0.00 2.52
3930 4287 7.814264 AAGTGATTGTTCTCTGATGTTCTTT 57.186 32.000 0.00 0.00 0.00 2.52
3931 4288 7.814264 AGTGATTGTTCTCTGATGTTCTTTT 57.186 32.000 0.00 0.00 0.00 2.27
3932 4289 8.230472 AGTGATTGTTCTCTGATGTTCTTTTT 57.770 30.769 0.00 0.00 0.00 1.94
4000 4357 8.408043 TCAATTGGTTTGAAACACTATCTGAT 57.592 30.769 10.53 0.00 41.38 2.90
4102 4459 7.327975 TGAAGAGCTATTCGAATTGTAAGGAA 58.672 34.615 17.19 0.00 31.52 3.36
4111 4468 6.294361 TCGAATTGTAAGGAAGGATCTTCA 57.706 37.500 9.48 0.00 0.00 3.02
4153 4510 4.619973 TCATTTGTGCAATTCTTGACCAC 58.380 39.130 0.00 0.00 0.00 4.16
4230 4587 2.267174 ACATCAGTTCTTGCACTGCT 57.733 45.000 1.98 0.00 43.51 4.24
4329 4690 8.814038 AACTTATCCTCTTCAGCAATGTTTAT 57.186 30.769 0.00 0.00 0.00 1.40
4400 4761 7.349412 AGAGTTTGACTAACTTGTGAGTACT 57.651 36.000 0.00 0.00 47.00 2.73
4430 4791 8.764287 GTTTGTAGAATTTTGCTTGCATTACTT 58.236 29.630 0.00 0.00 0.00 2.24
4486 4847 5.177326 AGCAGAGTCTCATGAATTGTTCTC 58.823 41.667 1.94 0.00 0.00 2.87
4623 4984 9.693739 TCTATATTTGGTTACATGTTTGGATGT 57.306 29.630 2.30 0.00 39.87 3.06
4626 4987 5.461032 TTGGTTACATGTTTGGATGTTCC 57.539 39.130 2.30 0.00 37.70 3.62
4627 4988 4.735369 TGGTTACATGTTTGGATGTTCCT 58.265 39.130 2.30 0.00 37.70 3.36
4628 4989 5.882040 TGGTTACATGTTTGGATGTTCCTA 58.118 37.500 2.30 0.00 37.70 2.94
4629 4990 5.708230 TGGTTACATGTTTGGATGTTCCTAC 59.292 40.000 2.30 0.00 37.70 3.18
4630 4991 5.944007 GGTTACATGTTTGGATGTTCCTACT 59.056 40.000 2.30 0.00 37.70 2.57
4631 4992 6.128007 GGTTACATGTTTGGATGTTCCTACTG 60.128 42.308 2.30 0.00 37.70 2.74
4632 4993 3.758554 ACATGTTTGGATGTTCCTACTGC 59.241 43.478 0.00 0.00 37.46 4.40
4633 4994 3.500448 TGTTTGGATGTTCCTACTGCA 57.500 42.857 0.00 0.00 37.46 4.41
4666 5027 7.283127 TCATTCTCTAATATTGTTCACCCTTGC 59.717 37.037 0.00 0.00 0.00 4.01
4705 5066 6.261158 GCTTAGGGATCTTTCCTACAATGAAC 59.739 42.308 0.00 0.00 42.20 3.18
4773 5134 6.220930 TCTTCAACTGTATGTTCAGTACCAC 58.779 40.000 0.00 0.00 46.25 4.16
4864 5225 7.386025 AGAAATTTGAGCAAAAACCATCTTAGC 59.614 33.333 0.00 0.00 33.56 3.09
4964 5325 4.170468 AGTTCTGTTGGTGGTCATCTTT 57.830 40.909 0.00 0.00 0.00 2.52
4965 5326 4.137543 AGTTCTGTTGGTGGTCATCTTTC 58.862 43.478 0.00 0.00 0.00 2.62
5260 5626 9.515020 TCAGCTTAAACATCTTGTAAGTTTTTG 57.485 29.630 0.00 0.00 36.85 2.44
5273 5639 2.110578 AGTTTTTGTTTGCCAGCTCCT 58.889 42.857 0.00 0.00 0.00 3.69
5302 5668 5.296780 GCAGCATTGGCAATTACTTAGTCTA 59.703 40.000 10.65 0.00 44.61 2.59
5434 5800 2.375845 TCCCCGTGGAAAGGTATCAAAA 59.624 45.455 0.00 0.00 37.86 2.44
5479 5845 3.102204 TGCCCCTCTGTTACTACCTTAC 58.898 50.000 0.00 0.00 0.00 2.34
5521 5887 2.980233 GCACGCAGCTTCTTGGGT 60.980 61.111 0.00 0.00 43.98 4.51
5677 6043 3.517602 TGTTCCAGTGAATATTCGGACG 58.482 45.455 10.80 0.00 31.98 4.79
5711 6077 1.337071 TCATCTCGGGCTTCGTCATAC 59.663 52.381 0.60 0.00 40.32 2.39
5716 6082 0.384309 CGGGCTTCGTCATACTGCTA 59.616 55.000 0.00 0.00 0.00 3.49
5800 6166 1.846007 AACCAGTGCAAGGTTTGTGA 58.154 45.000 16.81 0.00 46.85 3.58
5818 6184 2.415512 GTGAGCATCCTGTCCGTTAAAC 59.584 50.000 0.00 0.00 0.00 2.01
5865 6231 4.758773 TGTCATAATGGCACTCATCTCA 57.241 40.909 0.00 0.00 34.44 3.27
6164 6530 1.829849 CATGGCTTCTCACTCTCTCCA 59.170 52.381 0.00 0.00 0.00 3.86
6200 6566 7.047891 TGCTCTTCTACGATTACATGGAAAAT 58.952 34.615 0.00 0.00 0.00 1.82
6229 6595 1.136500 GTGGGATCTTCTCCACGGTAC 59.864 57.143 3.49 0.00 46.98 3.34
6247 6613 4.563061 GGTACGAACCAGTGACACTTTAT 58.437 43.478 5.04 0.00 45.98 1.40
6250 6616 6.017687 GGTACGAACCAGTGACACTTTATTTT 60.018 38.462 5.04 0.00 45.98 1.82
6255 6621 7.506328 AACCAGTGACACTTTATTTTACCTC 57.494 36.000 5.04 0.00 0.00 3.85
6271 6637 1.002087 ACCTCGTTTTCTTCCGCAGAT 59.998 47.619 0.00 0.00 0.00 2.90
6272 6638 2.232941 ACCTCGTTTTCTTCCGCAGATA 59.767 45.455 0.00 0.00 0.00 1.98
6289 6655 5.226396 GCAGATATATGGTCTGTCTCACAC 58.774 45.833 16.59 1.24 43.86 3.82
6299 6665 0.038251 TGTCTCACACGCATCTGTCC 60.038 55.000 0.00 0.00 0.00 4.02
6371 6737 1.519455 CACCCGACTGAGAATCGCC 60.519 63.158 0.00 0.00 38.61 5.54
6377 6743 2.267681 GACTGAGAATCGCCGTCGGT 62.268 60.000 13.94 0.00 38.61 4.69
6401 6767 2.025863 GCACAAGGGCTGGCATATCTT 61.026 52.381 2.88 0.00 0.00 2.40
6539 6905 4.309950 AAGACCCACGCGTCCACC 62.310 66.667 9.86 0.00 32.91 4.61
6590 6956 4.185059 GAGTACGCCCGGACGTCC 62.185 72.222 22.13 25.28 44.43 4.79
6608 6974 1.902508 TCCAGGCTGAACGAGAAATCT 59.097 47.619 17.94 0.00 0.00 2.40
6632 6998 2.159476 TGTGTACAGCTTCGGTATCGTC 60.159 50.000 0.00 0.00 37.69 4.20
6635 7001 0.739561 ACAGCTTCGGTATCGTCCTC 59.260 55.000 0.00 0.00 37.69 3.71
6653 7019 2.583441 CCTGGAGTTGCTCACCGGA 61.583 63.158 9.46 0.00 35.60 5.14
6739 7106 6.006759 TGAGTCTCAGATCATATTACTGCG 57.993 41.667 0.00 0.00 0.00 5.18
6743 7110 4.827284 TCTCAGATCATATTACTGCGGTCA 59.173 41.667 0.00 0.00 0.00 4.02
6745 7112 5.473039 TCAGATCATATTACTGCGGTCATG 58.527 41.667 0.00 4.96 0.00 3.07
6752 7119 3.326836 TTACTGCGGTCATGTCATTGA 57.673 42.857 0.00 0.00 0.00 2.57
6763 7130 4.624024 GTCATGTCATTGAATTGTGCAAGG 59.376 41.667 0.00 0.00 0.00 3.61
6781 7150 5.338300 TGCAAGGCACTCATAAGAATGAGTA 60.338 40.000 17.98 1.77 40.63 2.59
6801 7170 9.613957 ATGAGTACAACTATCTTTTATCGATCG 57.386 33.333 9.36 9.36 0.00 3.69
6803 7172 5.807730 ACAACTATCTTTTATCGATCGCG 57.192 39.130 11.09 0.00 39.35 5.87
6813 7182 7.524065 TCTTTTATCGATCGCGTTATGATCTA 58.476 34.615 11.09 0.00 40.05 1.98
6814 7183 8.019094 TCTTTTATCGATCGCGTTATGATCTAA 58.981 33.333 11.09 1.56 40.05 2.10
6815 7184 8.683550 TTTTATCGATCGCGTTATGATCTAAT 57.316 30.769 11.09 0.91 40.05 1.73
6816 7185 7.894013 TTATCGATCGCGTTATGATCTAATC 57.106 36.000 11.09 0.00 40.05 1.75
6823 7234 6.317857 TCGCGTTATGATCTAATCATCTGAG 58.682 40.000 5.77 1.07 46.62 3.35
6826 7237 6.534436 GCGTTATGATCTAATCATCTGAGCAT 59.466 38.462 5.73 0.00 46.62 3.79
6858 7269 6.486993 TGTATGTGTAGATAATGTCGAGAGCT 59.513 38.462 0.00 0.00 0.00 4.09
7060 7471 1.664321 GAAGCCCTCCTCTTACGCGA 61.664 60.000 15.93 0.00 0.00 5.87
7588 8002 4.082354 GCGTAGGGTTTCTTTCTGAGTAGA 60.082 45.833 0.00 0.00 0.00 2.59
7589 8003 5.394333 GCGTAGGGTTTCTTTCTGAGTAGAT 60.394 44.000 0.00 0.00 31.81 1.98
7590 8004 6.631962 CGTAGGGTTTCTTTCTGAGTAGATT 58.368 40.000 0.00 0.00 31.81 2.40
7591 8005 6.531948 CGTAGGGTTTCTTTCTGAGTAGATTG 59.468 42.308 0.00 0.00 31.81 2.67
7592 8006 6.688073 AGGGTTTCTTTCTGAGTAGATTGA 57.312 37.500 0.00 0.00 31.81 2.57
7593 8007 7.264294 AGGGTTTCTTTCTGAGTAGATTGAT 57.736 36.000 0.00 0.00 31.81 2.57
7594 8008 7.108847 AGGGTTTCTTTCTGAGTAGATTGATG 58.891 38.462 0.00 0.00 31.81 3.07
7595 8009 6.317391 GGGTTTCTTTCTGAGTAGATTGATGG 59.683 42.308 0.00 0.00 31.81 3.51
7608 8022 2.297698 TTGATGGATGGATGGATGGC 57.702 50.000 0.00 0.00 0.00 4.40
7622 8036 0.810648 GATGGCGCCATTGTTCTTCA 59.189 50.000 40.56 11.18 36.70 3.02
7623 8037 0.813184 ATGGCGCCATTGTTCTTCAG 59.187 50.000 36.10 0.00 31.82 3.02
7625 8039 1.153958 GCGCCATTGTTCTTCAGCC 60.154 57.895 0.00 0.00 0.00 4.85
7627 8041 0.962356 CGCCATTGTTCTTCAGCCCT 60.962 55.000 0.00 0.00 0.00 5.19
7628 8042 1.260544 GCCATTGTTCTTCAGCCCTT 58.739 50.000 0.00 0.00 0.00 3.95
7630 8044 2.517959 CCATTGTTCTTCAGCCCTTCA 58.482 47.619 0.00 0.00 0.00 3.02
7632 8046 4.272489 CCATTGTTCTTCAGCCCTTCATA 58.728 43.478 0.00 0.00 0.00 2.15
7633 8047 4.891756 CCATTGTTCTTCAGCCCTTCATAT 59.108 41.667 0.00 0.00 0.00 1.78
7634 8048 5.361857 CCATTGTTCTTCAGCCCTTCATATT 59.638 40.000 0.00 0.00 0.00 1.28
7637 8063 6.271488 TGTTCTTCAGCCCTTCATATTTTG 57.729 37.500 0.00 0.00 0.00 2.44
7643 8069 6.271488 TCAGCCCTTCATATTTTGTTCTTG 57.729 37.500 0.00 0.00 0.00 3.02
7676 8102 4.567558 GTGTTGATGATCAGAGCTTCAGAG 59.432 45.833 0.09 0.00 0.00 3.35
7734 8174 1.767759 TCAGGATGATCTCGTGAGCA 58.232 50.000 7.98 7.98 42.56 4.26
7779 8219 1.156034 ATGCGCTGTGATGATGACGG 61.156 55.000 9.73 0.00 0.00 4.79
7806 8252 6.392199 ACCAGAGGGAGAGATACTACTACTA 58.608 44.000 0.00 0.00 38.05 1.82
7813 8259 8.012477 AGGGAGAGATACTACTACTACTACTGT 58.988 40.741 0.00 0.00 0.00 3.55
7814 8260 9.308000 GGGAGAGATACTACTACTACTACTGTA 57.692 40.741 0.00 0.00 0.00 2.74
7823 8269 8.034215 ACTACTACTACTACTGTATCATAGCCG 58.966 40.741 0.00 0.00 0.00 5.52
7824 8270 7.002250 ACTACTACTACTGTATCATAGCCGA 57.998 40.000 0.00 0.00 0.00 5.54
7825 8271 7.622713 ACTACTACTACTGTATCATAGCCGAT 58.377 38.462 0.00 0.00 0.00 4.18
7871 8317 3.921630 TGTGAGCGCATTGAATTGAATTG 59.078 39.130 11.47 0.00 0.00 2.32
8004 8454 1.597797 TTTGCTGCTATGCTGTGGCC 61.598 55.000 0.00 0.00 37.74 5.36
8006 8456 2.898840 CTGCTATGCTGTGGCCGG 60.899 66.667 0.00 0.00 37.74 6.13
8060 8513 3.533547 CTTTCTGCCTCTGAATCTCTGG 58.466 50.000 0.00 0.00 0.00 3.86
8098 8560 1.792941 GCTGCTGCTGAACTGTAGC 59.207 57.895 10.92 12.79 45.62 3.58
8116 8584 6.594159 ACTGTAGCAGTGGTGTATCAATTTAC 59.406 38.462 4.76 0.00 43.63 2.01
8117 8585 6.707290 TGTAGCAGTGGTGTATCAATTTACT 58.293 36.000 4.76 0.00 0.00 2.24
8118 8586 7.842982 TGTAGCAGTGGTGTATCAATTTACTA 58.157 34.615 4.76 0.00 0.00 1.82
8119 8587 8.482943 TGTAGCAGTGGTGTATCAATTTACTAT 58.517 33.333 4.76 0.00 0.00 2.12
8120 8588 9.976511 GTAGCAGTGGTGTATCAATTTACTATA 57.023 33.333 4.76 0.00 0.00 1.31
8127 8595 9.489084 TGGTGTATCAATTTACTATATGTCTGC 57.511 33.333 0.00 0.00 0.00 4.26
8133 8601 6.983890 TCAATTTACTATATGTCTGCTTCGCA 59.016 34.615 0.00 0.00 36.92 5.10
8204 8677 1.307097 GCCTCCTTGATGATGAGCAC 58.693 55.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.314647 TTTTTCGCGAGAGGCACGG 61.315 57.895 9.59 0.00 43.84 4.94
45 46 3.240203 TTTTTCGCGAGAGGCACG 58.760 55.556 9.59 0.00 43.84 5.34
93 94 2.619557 AAATTTTGCGCGAAACAACG 57.380 40.000 24.62 0.00 0.00 4.10
112 113 3.219052 AGCGTTTCGACCAAACAAAAA 57.781 38.095 0.00 0.00 44.27 1.94
113 114 2.923605 AGCGTTTCGACCAAACAAAA 57.076 40.000 0.00 0.00 44.27 2.44
114 115 3.242804 CCTTAGCGTTTCGACCAAACAAA 60.243 43.478 0.00 0.00 44.27 2.83
115 116 2.288458 CCTTAGCGTTTCGACCAAACAA 59.712 45.455 0.00 0.00 44.27 2.83
116 117 1.868498 CCTTAGCGTTTCGACCAAACA 59.132 47.619 0.00 0.00 44.27 2.83
117 118 2.137523 TCCTTAGCGTTTCGACCAAAC 58.862 47.619 0.00 0.00 41.08 2.93
118 119 2.529780 TCCTTAGCGTTTCGACCAAA 57.470 45.000 0.00 0.00 0.00 3.28
119 120 2.036217 TCTTCCTTAGCGTTTCGACCAA 59.964 45.455 0.00 0.00 0.00 3.67
120 121 1.614903 TCTTCCTTAGCGTTTCGACCA 59.385 47.619 0.00 0.00 0.00 4.02
121 122 1.991264 GTCTTCCTTAGCGTTTCGACC 59.009 52.381 0.00 0.00 0.00 4.79
122 123 1.991264 GGTCTTCCTTAGCGTTTCGAC 59.009 52.381 0.00 0.00 0.00 4.20
123 124 1.401931 CGGTCTTCCTTAGCGTTTCGA 60.402 52.381 0.00 0.00 33.40 3.71
124 125 0.989890 CGGTCTTCCTTAGCGTTTCG 59.010 55.000 0.00 0.00 33.40 3.46
125 126 1.356938 CCGGTCTTCCTTAGCGTTTC 58.643 55.000 0.00 0.00 36.16 2.78
126 127 0.036671 CCCGGTCTTCCTTAGCGTTT 60.037 55.000 0.00 0.00 36.16 3.60
127 128 0.901580 TCCCGGTCTTCCTTAGCGTT 60.902 55.000 0.00 0.00 36.16 4.84
128 129 0.901580 TTCCCGGTCTTCCTTAGCGT 60.902 55.000 0.00 0.00 36.16 5.07
129 130 0.248289 TTTCCCGGTCTTCCTTAGCG 59.752 55.000 0.00 0.00 37.58 4.26
130 131 2.484742 TTTTCCCGGTCTTCCTTAGC 57.515 50.000 0.00 0.00 0.00 3.09
178 179 6.305639 GTTTTCGGCTTTTTAAACGGTTTTT 58.694 32.000 11.87 0.00 0.00 1.94
179 180 5.444350 CGTTTTCGGCTTTTTAAACGGTTTT 60.444 36.000 11.87 0.00 45.26 2.43
180 181 4.031539 CGTTTTCGGCTTTTTAAACGGTTT 59.968 37.500 11.33 11.33 45.26 3.27
181 182 3.547068 CGTTTTCGGCTTTTTAAACGGTT 59.453 39.130 10.17 0.00 45.26 4.44
182 183 3.107407 CGTTTTCGGCTTTTTAAACGGT 58.893 40.909 10.17 0.00 45.26 4.83
183 184 3.739484 CGTTTTCGGCTTTTTAAACGG 57.261 42.857 10.17 0.00 45.26 4.44
185 186 2.531103 ACGCGTTTTCGGCTTTTTAAAC 59.469 40.909 5.58 0.00 44.29 2.01
186 187 2.530700 CACGCGTTTTCGGCTTTTTAAA 59.469 40.909 10.22 0.00 44.29 1.52
187 188 2.110226 CACGCGTTTTCGGCTTTTTAA 58.890 42.857 10.22 0.00 44.29 1.52
188 189 1.744374 CACGCGTTTTCGGCTTTTTA 58.256 45.000 10.22 0.00 44.29 1.52
189 190 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
190 191 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
191 192 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
192 193 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
195 196 2.968330 TTTTCCGCACGCGTTTTCGG 62.968 55.000 28.08 28.08 44.29 4.30
197 198 1.125270 ATTTTTCCGCACGCGTTTTC 58.875 45.000 10.22 0.04 37.81 2.29
198 199 2.402640 TATTTTTCCGCACGCGTTTT 57.597 40.000 10.22 0.00 37.81 2.43
199 200 2.402640 TTATTTTTCCGCACGCGTTT 57.597 40.000 10.22 0.00 37.81 3.60
200 201 2.622546 ATTATTTTTCCGCACGCGTT 57.377 40.000 10.22 0.00 37.81 4.84
201 202 2.622546 AATTATTTTTCCGCACGCGT 57.377 40.000 5.58 5.58 37.81 6.01
202 203 5.423097 TTTTAATTATTTTTCCGCACGCG 57.577 34.783 3.53 3.53 39.44 6.01
226 227 3.827722 TGGACGTTTCCTCCAGATTTTT 58.172 40.909 0.00 0.00 43.31 1.94
227 228 3.502123 TGGACGTTTCCTCCAGATTTT 57.498 42.857 0.00 0.00 43.31 1.82
233 234 1.118965 TGCTCTGGACGTTTCCTCCA 61.119 55.000 0.00 0.00 43.31 3.86
234 235 0.670854 GTGCTCTGGACGTTTCCTCC 60.671 60.000 0.00 0.00 43.31 4.30
235 236 1.009389 CGTGCTCTGGACGTTTCCTC 61.009 60.000 3.56 0.00 43.31 3.71
236 237 1.006102 CGTGCTCTGGACGTTTCCT 60.006 57.895 3.56 0.00 43.31 3.36
237 238 1.006571 TCGTGCTCTGGACGTTTCC 60.007 57.895 10.95 0.00 43.19 3.13
238 239 0.596600 TGTCGTGCTCTGGACGTTTC 60.597 55.000 10.95 4.93 38.04 2.78
239 240 0.874607 GTGTCGTGCTCTGGACGTTT 60.875 55.000 10.95 0.00 38.04 3.60
240 241 1.299926 GTGTCGTGCTCTGGACGTT 60.300 57.895 10.95 0.00 38.04 3.99
241 242 2.335369 GTGTCGTGCTCTGGACGT 59.665 61.111 10.95 0.00 38.04 4.34
242 243 2.801162 CGTGTCGTGCTCTGGACG 60.801 66.667 5.30 5.30 35.95 4.79
243 244 2.335369 ACGTGTCGTGCTCTGGAC 59.665 61.111 0.00 0.00 39.18 4.02
252 253 2.736995 CCATTCGCCACGTGTCGT 60.737 61.111 19.21 0.00 42.36 4.34
253 254 4.147322 GCCATTCGCCACGTGTCG 62.147 66.667 13.61 13.61 0.00 4.35
254 255 2.742372 AGCCATTCGCCACGTGTC 60.742 61.111 15.65 0.00 38.78 3.67
255 256 3.049674 CAGCCATTCGCCACGTGT 61.050 61.111 15.65 0.00 38.78 4.49
256 257 2.741985 TCAGCCATTCGCCACGTG 60.742 61.111 9.08 9.08 38.78 4.49
257 258 2.434884 CTCAGCCATTCGCCACGT 60.435 61.111 0.00 0.00 38.78 4.49
258 259 2.125552 TCTCAGCCATTCGCCACG 60.126 61.111 0.00 0.00 38.78 4.94
259 260 1.078848 ACTCTCAGCCATTCGCCAC 60.079 57.895 0.00 0.00 38.78 5.01
260 261 1.219124 GACTCTCAGCCATTCGCCA 59.781 57.895 0.00 0.00 38.78 5.69
261 262 1.086634 GTGACTCTCAGCCATTCGCC 61.087 60.000 0.00 0.00 38.78 5.54
262 263 1.416813 CGTGACTCTCAGCCATTCGC 61.417 60.000 0.00 0.00 37.98 4.70
263 264 0.803768 CCGTGACTCTCAGCCATTCG 60.804 60.000 0.00 0.00 0.00 3.34
264 265 0.247736 ACCGTGACTCTCAGCCATTC 59.752 55.000 0.00 0.00 0.00 2.67
265 266 0.687354 AACCGTGACTCTCAGCCATT 59.313 50.000 0.00 0.00 0.00 3.16
266 267 0.687354 AAACCGTGACTCTCAGCCAT 59.313 50.000 0.00 0.00 0.00 4.40
267 268 0.468226 AAAACCGTGACTCTCAGCCA 59.532 50.000 0.00 0.00 0.00 4.75
268 269 1.594331 AAAAACCGTGACTCTCAGCC 58.406 50.000 0.00 0.00 0.00 4.85
284 285 1.153353 CTTCGGTAGCCTCGCAAAAA 58.847 50.000 0.00 0.00 0.00 1.94
285 286 0.319083 TCTTCGGTAGCCTCGCAAAA 59.681 50.000 0.00 0.00 0.00 2.44
286 287 0.319083 TTCTTCGGTAGCCTCGCAAA 59.681 50.000 0.00 0.00 0.00 3.68
287 288 0.108804 CTTCTTCGGTAGCCTCGCAA 60.109 55.000 0.00 0.00 0.00 4.85
288 289 1.511305 CTTCTTCGGTAGCCTCGCA 59.489 57.895 0.00 0.00 0.00 5.10
289 290 1.878975 GCTTCTTCGGTAGCCTCGC 60.879 63.158 0.00 0.00 33.15 5.03
290 291 1.586564 CGCTTCTTCGGTAGCCTCG 60.587 63.158 0.00 0.00 35.37 4.63
291 292 1.878975 GCGCTTCTTCGGTAGCCTC 60.879 63.158 0.00 0.00 35.37 4.70
292 293 2.184579 GCGCTTCTTCGGTAGCCT 59.815 61.111 0.00 0.00 35.37 4.58
293 294 2.167861 CAGCGCTTCTTCGGTAGCC 61.168 63.158 7.50 0.00 38.18 3.93
294 295 2.167861 CCAGCGCTTCTTCGGTAGC 61.168 63.158 7.50 0.00 38.18 3.58
295 296 0.389948 AACCAGCGCTTCTTCGGTAG 60.390 55.000 15.93 0.00 38.18 3.18
296 297 0.889994 TAACCAGCGCTTCTTCGGTA 59.110 50.000 15.93 3.52 38.18 4.02
297 298 0.034337 TTAACCAGCGCTTCTTCGGT 59.966 50.000 7.50 9.29 41.17 4.69
298 299 0.442699 GTTAACCAGCGCTTCTTCGG 59.557 55.000 7.50 8.47 0.00 4.30
299 300 0.442699 GGTTAACCAGCGCTTCTTCG 59.557 55.000 20.12 0.00 35.64 3.79
300 301 1.519408 TGGTTAACCAGCGCTTCTTC 58.481 50.000 23.69 0.00 42.01 2.87
301 302 3.717842 TGGTTAACCAGCGCTTCTT 57.282 47.368 23.69 4.06 42.01 2.52
310 311 0.250553 CGGGAGCAACTGGTTAACCA 60.251 55.000 25.58 25.58 45.30 3.67
311 312 0.035739 TCGGGAGCAACTGGTTAACC 59.964 55.000 18.27 18.27 0.00 2.85
312 313 1.534163 GTTCGGGAGCAACTGGTTAAC 59.466 52.381 0.00 0.00 0.00 2.01
313 314 1.543871 GGTTCGGGAGCAACTGGTTAA 60.544 52.381 0.00 0.00 0.00 2.01
314 315 0.035739 GGTTCGGGAGCAACTGGTTA 59.964 55.000 0.00 0.00 0.00 2.85
315 316 1.228154 GGTTCGGGAGCAACTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
316 317 1.990160 TTGGTTCGGGAGCAACTGGT 61.990 55.000 0.00 0.00 40.60 4.00
317 318 1.228124 TTGGTTCGGGAGCAACTGG 60.228 57.895 0.00 0.00 40.60 4.00
318 319 4.473643 TTGGTTCGGGAGCAACTG 57.526 55.556 0.00 0.00 40.60 3.16
322 323 0.331278 ATTGGATTGGTTCGGGAGCA 59.669 50.000 0.00 0.00 0.00 4.26
323 324 1.025041 GATTGGATTGGTTCGGGAGC 58.975 55.000 0.00 0.00 0.00 4.70
324 325 1.064758 TGGATTGGATTGGTTCGGGAG 60.065 52.381 0.00 0.00 0.00 4.30
325 326 0.995803 TGGATTGGATTGGTTCGGGA 59.004 50.000 0.00 0.00 0.00 5.14
326 327 1.340991 ACTGGATTGGATTGGTTCGGG 60.341 52.381 0.00 0.00 0.00 5.14
327 328 2.128771 ACTGGATTGGATTGGTTCGG 57.871 50.000 0.00 0.00 0.00 4.30
328 329 3.426159 CGAAACTGGATTGGATTGGTTCG 60.426 47.826 0.00 0.00 0.00 3.95
329 330 3.673323 GCGAAACTGGATTGGATTGGTTC 60.673 47.826 0.00 0.00 0.00 3.62
330 331 2.231235 GCGAAACTGGATTGGATTGGTT 59.769 45.455 0.00 0.00 0.00 3.67
331 332 1.818674 GCGAAACTGGATTGGATTGGT 59.181 47.619 0.00 0.00 0.00 3.67
332 333 1.202177 CGCGAAACTGGATTGGATTGG 60.202 52.381 0.00 0.00 0.00 3.16
333 334 1.795162 GCGCGAAACTGGATTGGATTG 60.795 52.381 12.10 0.00 0.00 2.67
334 335 0.451783 GCGCGAAACTGGATTGGATT 59.548 50.000 12.10 0.00 0.00 3.01
335 336 1.705337 CGCGCGAAACTGGATTGGAT 61.705 55.000 28.94 0.00 0.00 3.41
336 337 2.387445 CGCGCGAAACTGGATTGGA 61.387 57.895 28.94 0.00 0.00 3.53
360 361 5.105473 GGTTAATAAGGTTGGAAAAGGCCTC 60.105 44.000 5.23 0.00 0.00 4.70
368 369 3.564790 GCAGGGGGTTAATAAGGTTGGAA 60.565 47.826 0.00 0.00 0.00 3.53
371 372 2.384828 GGCAGGGGGTTAATAAGGTTG 58.615 52.381 0.00 0.00 0.00 3.77
373 374 0.931468 GGGCAGGGGGTTAATAAGGT 59.069 55.000 0.00 0.00 0.00 3.50
375 376 1.231963 AGGGGCAGGGGGTTAATAAG 58.768 55.000 0.00 0.00 0.00 1.73
376 377 2.609609 TAGGGGCAGGGGGTTAATAA 57.390 50.000 0.00 0.00 0.00 1.40
377 378 2.515005 GTTTAGGGGCAGGGGGTTAATA 59.485 50.000 0.00 0.00 0.00 0.98
380 381 1.216368 GGTTTAGGGGCAGGGGGTTA 61.216 60.000 0.00 0.00 0.00 2.85
382 383 2.944954 GGTTTAGGGGCAGGGGGT 60.945 66.667 0.00 0.00 0.00 4.95
387 388 2.854300 ATTGCGGGGTTTAGGGGCAG 62.854 60.000 0.00 0.00 34.76 4.85
388 389 2.847366 GATTGCGGGGTTTAGGGGCA 62.847 60.000 0.00 0.00 0.00 5.36
389 390 2.043349 ATTGCGGGGTTTAGGGGC 60.043 61.111 0.00 0.00 0.00 5.80
403 404 0.451783 GGCCCACTTGTTAGCGATTG 59.548 55.000 0.00 0.00 0.00 2.67
404 405 0.679960 GGGCCCACTTGTTAGCGATT 60.680 55.000 19.95 0.00 0.00 3.34
405 406 1.077716 GGGCCCACTTGTTAGCGAT 60.078 57.895 19.95 0.00 0.00 4.58
406 407 2.349755 GGGCCCACTTGTTAGCGA 59.650 61.111 19.95 0.00 0.00 4.93
407 408 3.124921 CGGGCCCACTTGTTAGCG 61.125 66.667 24.92 0.00 0.00 4.26
408 409 2.750237 CCGGGCCCACTTGTTAGC 60.750 66.667 24.92 0.00 0.00 3.09
409 410 2.750237 GCCGGGCCCACTTGTTAG 60.750 66.667 24.92 1.64 0.00 2.34
434 442 1.735920 CAGACTGGCGAGCTGTGAC 60.736 63.158 0.00 0.00 0.00 3.67
448 456 2.039405 CAGAAGCCAGGCTGCAGAC 61.039 63.158 22.82 17.00 39.62 3.51
520 541 1.454653 GTTTCCTTTCGAACGTCCTCG 59.545 52.381 0.00 3.24 43.34 4.63
525 546 1.824272 CGCCGTTTCCTTTCGAACGT 61.824 55.000 0.00 0.00 45.12 3.99
543 564 1.540267 AGATGGCCAGCTATACGTACG 59.460 52.381 25.01 15.01 0.00 3.67
544 565 3.576648 GAAGATGGCCAGCTATACGTAC 58.423 50.000 26.58 6.33 0.00 3.67
545 566 2.228103 CGAAGATGGCCAGCTATACGTA 59.772 50.000 26.58 0.00 0.00 3.57
610 655 4.214327 GAAGCGAGGAGGCGGAGG 62.214 72.222 0.00 0.00 38.18 4.30
615 660 0.751643 AGAGAGAGAAGCGAGGAGGC 60.752 60.000 0.00 0.00 0.00 4.70
617 662 1.405105 CCAAGAGAGAGAAGCGAGGAG 59.595 57.143 0.00 0.00 0.00 3.69
618 663 1.468985 CCAAGAGAGAGAAGCGAGGA 58.531 55.000 0.00 0.00 0.00 3.71
619 664 0.179113 GCCAAGAGAGAGAAGCGAGG 60.179 60.000 0.00 0.00 0.00 4.63
623 668 0.322975 TGGTGCCAAGAGAGAGAAGC 59.677 55.000 0.00 0.00 0.00 3.86
624 669 1.345741 TGTGGTGCCAAGAGAGAGAAG 59.654 52.381 0.00 0.00 0.00 2.85
625 670 1.070758 GTGTGGTGCCAAGAGAGAGAA 59.929 52.381 0.00 0.00 0.00 2.87
871 933 0.526524 GCTACTACCAGCACTGCTCG 60.527 60.000 0.00 0.00 41.40 5.03
880 942 1.134560 GACCGTGGAAGCTACTACCAG 59.865 57.143 0.00 0.00 34.21 4.00
951 1019 0.494095 ACTGACCTTCCTTCCCCTCT 59.506 55.000 0.00 0.00 0.00 3.69
954 1022 1.547901 CCAAACTGACCTTCCTTCCCC 60.548 57.143 0.00 0.00 0.00 4.81
955 1023 1.547901 CCCAAACTGACCTTCCTTCCC 60.548 57.143 0.00 0.00 0.00 3.97
956 1024 1.547901 CCCCAAACTGACCTTCCTTCC 60.548 57.143 0.00 0.00 0.00 3.46
957 1025 1.145119 ACCCCAAACTGACCTTCCTTC 59.855 52.381 0.00 0.00 0.00 3.46
958 1026 1.145119 GACCCCAAACTGACCTTCCTT 59.855 52.381 0.00 0.00 0.00 3.36
959 1027 0.771755 GACCCCAAACTGACCTTCCT 59.228 55.000 0.00 0.00 0.00 3.36
960 1028 0.605589 CGACCCCAAACTGACCTTCC 60.606 60.000 0.00 0.00 0.00 3.46
961 1029 0.108019 ACGACCCCAAACTGACCTTC 59.892 55.000 0.00 0.00 0.00 3.46
962 1030 0.179029 CACGACCCCAAACTGACCTT 60.179 55.000 0.00 0.00 0.00 3.50
963 1031 1.450211 CACGACCCCAAACTGACCT 59.550 57.895 0.00 0.00 0.00 3.85
964 1032 2.258726 GCACGACCCCAAACTGACC 61.259 63.158 0.00 0.00 0.00 4.02
965 1033 2.604174 CGCACGACCCCAAACTGAC 61.604 63.158 0.00 0.00 0.00 3.51
966 1034 2.280524 CGCACGACCCCAAACTGA 60.281 61.111 0.00 0.00 0.00 3.41
967 1035 4.025401 GCGCACGACCCCAAACTG 62.025 66.667 0.30 0.00 0.00 3.16
985 1053 3.830192 CATTCCGCCAAGCAGCCC 61.830 66.667 0.00 0.00 0.00 5.19
986 1054 3.830192 CCATTCCGCCAAGCAGCC 61.830 66.667 0.00 0.00 0.00 4.85
1008 1076 4.368808 CACCGCCGCAACGACTTG 62.369 66.667 0.00 0.00 34.06 3.16
1049 1120 1.537990 CCAAAAACAGCCCAAGAACCG 60.538 52.381 0.00 0.00 0.00 4.44
1257 1363 1.988956 AGCCAGAGGAGGAGCACAG 60.989 63.158 0.00 0.00 0.00 3.66
1259 1365 2.583520 CAGCCAGAGGAGGAGCAC 59.416 66.667 0.00 0.00 0.00 4.40
1261 1367 4.173924 GCCAGCCAGAGGAGGAGC 62.174 72.222 0.00 0.00 0.00 4.70
1262 1368 1.633915 AATGCCAGCCAGAGGAGGAG 61.634 60.000 0.00 0.00 0.00 3.69
1264 1370 1.453379 CAATGCCAGCCAGAGGAGG 60.453 63.158 0.00 0.00 0.00 4.30
1298 1404 1.895798 GGGAAAAGGCAAAGGGAGAAG 59.104 52.381 0.00 0.00 0.00 2.85
1408 1520 9.482627 AAAGCACATTTATTTTGTTTTCGGATA 57.517 25.926 0.00 0.00 0.00 2.59
1448 1562 4.473559 AGAAAGAACCGAGGGGATAATCAA 59.526 41.667 0.00 0.00 36.97 2.57
1449 1563 4.037927 AGAAAGAACCGAGGGGATAATCA 58.962 43.478 0.00 0.00 36.97 2.57
1467 1581 5.302568 AGAGGATCATTTGTTGTGCAAGAAA 59.697 36.000 9.17 9.17 37.84 2.52
1472 1586 4.025040 AGAGAGGATCATTTGTTGTGCA 57.975 40.909 0.00 0.00 37.82 4.57
1492 1606 5.687285 AGTTCATTTAAGCAGCGAAACAAAG 59.313 36.000 0.00 0.00 0.00 2.77
1656 1777 0.392193 GTGATGGTGCTCTGGTCTGG 60.392 60.000 0.00 0.00 0.00 3.86
1659 1780 0.107945 GGAGTGATGGTGCTCTGGTC 60.108 60.000 0.00 0.00 32.67 4.02
1660 1781 1.557269 GGGAGTGATGGTGCTCTGGT 61.557 60.000 0.00 0.00 32.67 4.00
1661 1782 1.222936 GGGAGTGATGGTGCTCTGG 59.777 63.158 0.00 0.00 32.67 3.86
1681 1802 2.289979 AGAGGAGGGGGAGGGGAT 60.290 66.667 0.00 0.00 0.00 3.85
1682 1803 3.368501 CAGAGGAGGGGGAGGGGA 61.369 72.222 0.00 0.00 0.00 4.81
1687 1808 0.692419 GAAGATGCAGAGGAGGGGGA 60.692 60.000 0.00 0.00 0.00 4.81
1689 1810 1.211456 AAGAAGATGCAGAGGAGGGG 58.789 55.000 0.00 0.00 0.00 4.79
1690 1811 3.708631 TCTTAAGAAGATGCAGAGGAGGG 59.291 47.826 1.68 0.00 31.20 4.30
1691 1812 5.549742 ATCTTAAGAAGATGCAGAGGAGG 57.450 43.478 9.71 0.00 46.16 4.30
1696 1817 7.094075 ATGCACAAAATCTTAAGAAGATGCAGA 60.094 33.333 24.64 12.34 45.89 4.26
1697 1818 7.033791 ATGCACAAAATCTTAAGAAGATGCAG 58.966 34.615 24.64 15.10 45.89 4.41
1761 1882 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1762 1883 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1763 1884 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1764 1885 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1765 1886 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1766 1887 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1767 1888 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1768 1889 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1769 1890 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1770 1891 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1771 1892 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1772 1893 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1773 1894 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1774 1895 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1775 1896 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1776 1897 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1777 1898 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1778 1899 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1779 1900 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1780 1901 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1781 1902 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1782 1903 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1783 1904 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
1784 1905 5.960811 AGAAAGAGAGAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
1785 1906 6.232581 AGAAAGAGAGAGAGAGAGAGAGAG 57.767 45.833 0.00 0.00 0.00 3.20
1786 1907 6.627087 AAGAAAGAGAGAGAGAGAGAGAGA 57.373 41.667 0.00 0.00 0.00 3.10
1787 1908 8.792830 TTAAAGAAAGAGAGAGAGAGAGAGAG 57.207 38.462 0.00 0.00 0.00 3.20
1788 1909 9.581289 TTTTAAAGAAAGAGAGAGAGAGAGAGA 57.419 33.333 0.00 0.00 0.00 3.10
1798 1919 9.547753 CGGATGGATATTTTAAAGAAAGAGAGA 57.452 33.333 0.00 0.00 0.00 3.10
1799 1920 9.547753 TCGGATGGATATTTTAAAGAAAGAGAG 57.452 33.333 0.00 0.00 0.00 3.20
1889 2013 1.915078 ATCCAGCAGGGTGTGGTAGC 61.915 60.000 0.00 0.00 34.15 3.58
1902 2026 1.171308 TCAGCAAGAGCAAATCCAGC 58.829 50.000 0.00 0.00 45.49 4.85
1905 2029 5.573337 AACTAATCAGCAAGAGCAAATCC 57.427 39.130 0.00 0.00 45.49 3.01
1912 2036 8.412456 TGAGAGAGATAAACTAATCAGCAAGAG 58.588 37.037 0.00 0.00 0.00 2.85
1913 2037 8.298729 TGAGAGAGATAAACTAATCAGCAAGA 57.701 34.615 0.00 0.00 0.00 3.02
1914 2038 7.169645 GCTGAGAGAGATAAACTAATCAGCAAG 59.830 40.741 16.53 0.00 46.29 4.01
1915 2039 6.983307 GCTGAGAGAGATAAACTAATCAGCAA 59.017 38.462 16.53 0.00 46.29 3.91
1916 2040 6.511416 GCTGAGAGAGATAAACTAATCAGCA 58.489 40.000 16.53 0.00 46.29 4.41
1917 2041 5.925969 GGCTGAGAGAGATAAACTAATCAGC 59.074 44.000 13.86 13.86 46.30 4.26
1918 2042 6.267471 AGGGCTGAGAGAGATAAACTAATCAG 59.733 42.308 0.00 0.00 36.48 2.90
1938 2062 2.167075 GCACAAGCAAATCATTAGGGCT 59.833 45.455 0.00 0.00 41.58 5.19
2044 2185 6.069847 AGGACAATAAAAGAAGACCCGGATTA 60.070 38.462 0.73 0.00 0.00 1.75
2074 2215 7.657023 AAAGGTGGGAGTATAGTACTGTAAG 57.343 40.000 5.39 0.00 39.59 2.34
2075 2216 8.316214 CAAAAAGGTGGGAGTATAGTACTGTAA 58.684 37.037 5.39 0.00 39.59 2.41
2080 2221 5.585047 CAGCAAAAAGGTGGGAGTATAGTAC 59.415 44.000 0.00 0.00 41.98 2.73
2375 2536 2.122768 AGTAGCCTCTCATTCCTTGGG 58.877 52.381 0.00 0.00 0.00 4.12
2424 2588 0.321346 CCAAACCATGCTTTGACCCC 59.679 55.000 13.91 0.00 33.61 4.95
2464 2636 8.570068 ACCACAGAGAAACAACTTAAACTAAA 57.430 30.769 0.00 0.00 0.00 1.85
2465 2637 8.570068 AACCACAGAGAAACAACTTAAACTAA 57.430 30.769 0.00 0.00 0.00 2.24
2478 2652 3.500680 GCAATCCGTAAACCACAGAGAAA 59.499 43.478 0.00 0.00 0.00 2.52
2493 2667 2.549754 ACAGAAACTTGACAGCAATCCG 59.450 45.455 0.00 0.00 32.68 4.18
2513 2687 7.377766 TCATAACTCAAGCATTCTAAACCAC 57.622 36.000 0.00 0.00 0.00 4.16
2543 2717 7.325660 TGCAGCCATAATAAGAGAGAAAAAG 57.674 36.000 0.00 0.00 0.00 2.27
2544 2718 6.319658 CCTGCAGCCATAATAAGAGAGAAAAA 59.680 38.462 8.66 0.00 0.00 1.94
2553 2727 5.311265 TCAGAATCCTGCAGCCATAATAAG 58.689 41.667 8.66 0.00 40.20 1.73
2559 2733 1.562942 TCTTCAGAATCCTGCAGCCAT 59.437 47.619 8.66 0.00 40.20 4.40
2675 2850 6.668645 TGCCCAAGAATACAACAATAGGTAT 58.331 36.000 0.00 0.00 0.00 2.73
2679 2854 6.924111 AGTTTGCCCAAGAATACAACAATAG 58.076 36.000 0.00 0.00 0.00 1.73
2688 2863 6.189859 AGATCATCAAGTTTGCCCAAGAATA 58.810 36.000 0.00 0.00 0.00 1.75
2758 2933 4.798882 TGTCCCCAAGATAAACACTGTTT 58.201 39.130 11.82 11.82 0.00 2.83
2761 2936 5.982890 AAATGTCCCCAAGATAAACACTG 57.017 39.130 0.00 0.00 0.00 3.66
2800 2975 8.335532 TGATAATTTTCAGTACCAAGAACCAG 57.664 34.615 0.00 0.00 0.00 4.00
3074 3254 5.393243 GGCACAAAACTTACAAGTACCACAA 60.393 40.000 0.00 0.00 38.57 3.33
3098 3278 7.157347 TGATATAAAGCAGCATCTCCAAGTAG 58.843 38.462 0.00 0.00 0.00 2.57
3265 3445 3.827008 ATGAGCACCAATACATCGACT 57.173 42.857 0.00 0.00 0.00 4.18
3266 3446 4.094887 ACAAATGAGCACCAATACATCGAC 59.905 41.667 0.00 0.00 0.00 4.20
3508 3858 6.070710 AGTCTATTTCCTTGAAGTGACCTACC 60.071 42.308 0.00 0.00 0.00 3.18
3596 3952 3.919216 TCTCTGCAGACTAAAGAGTTGC 58.081 45.455 13.74 0.00 38.84 4.17
3614 3970 7.488187 TGAATATTTCAGCAGCTAACATCTC 57.512 36.000 0.00 0.00 34.08 2.75
3714 4071 1.276622 AGGACAGGTTGCCGAGTATT 58.723 50.000 0.00 0.00 0.00 1.89
3815 4172 9.803507 ATGCAAATATCTGAAGATAAATGGAGA 57.196 29.630 4.20 0.00 40.09 3.71
3933 4290 8.912988 ACATCAGAGAACAATTTCCAGTAAAAA 58.087 29.630 0.00 0.00 31.28 1.94
3934 4291 8.463930 ACATCAGAGAACAATTTCCAGTAAAA 57.536 30.769 0.00 0.00 31.28 1.52
3935 4292 8.352201 CAACATCAGAGAACAATTTCCAGTAAA 58.648 33.333 0.00 0.00 31.28 2.01
3936 4293 7.719193 TCAACATCAGAGAACAATTTCCAGTAA 59.281 33.333 0.00 0.00 31.28 2.24
3937 4294 7.223584 TCAACATCAGAGAACAATTTCCAGTA 58.776 34.615 0.00 0.00 31.28 2.74
3938 4295 6.064060 TCAACATCAGAGAACAATTTCCAGT 58.936 36.000 0.00 0.00 31.28 4.00
3939 4296 6.564709 TCAACATCAGAGAACAATTTCCAG 57.435 37.500 0.00 0.00 31.28 3.86
3940 4297 8.634335 TTATCAACATCAGAGAACAATTTCCA 57.366 30.769 0.00 0.00 31.28 3.53
3947 4304 9.049523 GCAGAATATTATCAACATCAGAGAACA 57.950 33.333 0.00 0.00 0.00 3.18
3948 4305 9.270640 AGCAGAATATTATCAACATCAGAGAAC 57.729 33.333 0.00 0.00 0.00 3.01
3949 4306 9.842775 AAGCAGAATATTATCAACATCAGAGAA 57.157 29.630 0.00 0.00 0.00 2.87
3950 4307 9.486497 GAAGCAGAATATTATCAACATCAGAGA 57.514 33.333 0.00 0.00 0.00 3.10
3951 4308 9.269453 TGAAGCAGAATATTATCAACATCAGAG 57.731 33.333 0.00 0.00 0.00 3.35
4012 4369 4.009675 TCATTCAGTTGCCTGTATGGAAC 58.990 43.478 8.84 0.00 43.13 3.62
4035 4392 5.954752 TGGAATTGTGCCCACTAATTCATTA 59.045 36.000 22.54 13.69 38.74 1.90
4153 4510 7.905493 GGCGAGATTTCTAGACAAAAATACAAG 59.095 37.037 0.00 0.00 0.00 3.16
4176 4533 1.068333 CCCTCAAGATTGTTGTTGGCG 60.068 52.381 0.00 0.00 0.00 5.69
4269 4626 4.970860 AGATGATACTCATGTTCAGGGG 57.029 45.455 0.00 0.00 37.20 4.79
4270 4627 5.061853 CCAAGATGATACTCATGTTCAGGG 58.938 45.833 0.00 0.00 38.15 4.45
4278 4635 6.653020 TGTTAAGCACCAAGATGATACTCAT 58.347 36.000 0.00 0.00 40.34 2.90
4279 4636 6.048732 TGTTAAGCACCAAGATGATACTCA 57.951 37.500 0.00 0.00 0.00 3.41
4280 4637 6.341316 TCTGTTAAGCACCAAGATGATACTC 58.659 40.000 0.00 0.00 0.00 2.59
4281 4638 6.299805 TCTGTTAAGCACCAAGATGATACT 57.700 37.500 0.00 0.00 0.00 2.12
4282 4639 6.595716 AGTTCTGTTAAGCACCAAGATGATAC 59.404 38.462 0.00 0.00 0.00 2.24
4283 4640 6.711277 AGTTCTGTTAAGCACCAAGATGATA 58.289 36.000 0.00 0.00 0.00 2.15
4284 4641 5.564550 AGTTCTGTTAAGCACCAAGATGAT 58.435 37.500 0.00 0.00 0.00 2.45
4285 4642 4.973168 AGTTCTGTTAAGCACCAAGATGA 58.027 39.130 0.00 0.00 0.00 2.92
4286 4643 5.695851 AAGTTCTGTTAAGCACCAAGATG 57.304 39.130 0.00 0.00 0.00 2.90
4329 4690 3.950397 AGAACCGTTCAATCTATTGCCA 58.050 40.909 13.69 0.00 37.68 4.92
4400 4761 4.026145 GCAAGCAAAATTCTACAAACGCAA 60.026 37.500 0.00 0.00 0.00 4.85
4459 4820 4.936411 ACAATTCATGAGACTCTGCTCAAG 59.064 41.667 3.68 0.00 46.94 3.02
4520 4881 7.264294 TGGGATATGGCCTTTAAAATTGTTT 57.736 32.000 3.32 0.00 0.00 2.83
4617 4978 4.290093 AGTAGATGCAGTAGGAACATCCA 58.710 43.478 0.00 0.00 40.87 3.41
4618 4979 4.946478 AGTAGATGCAGTAGGAACATCC 57.054 45.455 0.00 0.00 40.87 3.51
4619 4980 5.907207 TGAAGTAGATGCAGTAGGAACATC 58.093 41.667 0.00 0.00 40.40 3.06
4621 4982 5.939764 ATGAAGTAGATGCAGTAGGAACA 57.060 39.130 0.00 0.00 0.00 3.18
4622 4983 6.578023 AGAATGAAGTAGATGCAGTAGGAAC 58.422 40.000 0.00 0.00 0.00 3.62
4623 4984 6.609212 AGAGAATGAAGTAGATGCAGTAGGAA 59.391 38.462 0.00 0.00 0.00 3.36
4624 4985 6.132658 AGAGAATGAAGTAGATGCAGTAGGA 58.867 40.000 0.00 0.00 0.00 2.94
4625 4986 6.403866 AGAGAATGAAGTAGATGCAGTAGG 57.596 41.667 0.00 0.00 0.00 3.18
4666 5027 4.703897 TCCCTAAGCCAAAACGATAGATG 58.296 43.478 0.00 0.00 41.38 2.90
4964 5325 1.550072 TCATCAGCCATCACAACTCGA 59.450 47.619 0.00 0.00 0.00 4.04
4965 5326 2.014335 TCATCAGCCATCACAACTCG 57.986 50.000 0.00 0.00 0.00 4.18
5260 5626 1.676967 CAGGGAGGAGCTGGCAAAC 60.677 63.158 0.00 0.00 0.00 2.93
5273 5639 0.905809 AATTGCCAATGCTGCAGGGA 60.906 50.000 22.75 11.98 40.35 4.20
5302 5668 7.219484 AGCAAACAAGTCAATAAGCTAATGT 57.781 32.000 0.00 0.00 0.00 2.71
5434 5800 1.876849 ACAGAGCAGATGGGAGTCAT 58.123 50.000 0.00 0.00 39.13 3.06
5479 5845 7.679638 GCAGGTATTGGTTAGTATCAGCAAAAG 60.680 40.741 0.00 0.00 35.38 2.27
5521 5887 1.136110 TGAACGCTCAGCATCGGATTA 59.864 47.619 0.00 0.00 0.00 1.75
5677 6043 0.666913 AGATGATGCAAGCAATCGCC 59.333 50.000 0.00 0.00 33.49 5.54
5711 6077 3.003068 GCCAATAGCAGAACACATAGCAG 59.997 47.826 0.00 0.00 42.97 4.24
5800 6166 2.038557 ACAGTTTAACGGACAGGATGCT 59.961 45.455 1.74 0.00 42.53 3.79
5818 6184 8.218338 AGACAATTTTCTGGCATAGATTACAG 57.782 34.615 0.00 0.00 34.80 2.74
5839 6205 4.284829 TGAGTGCCATTATGACAAGACA 57.715 40.909 0.00 0.00 0.00 3.41
5840 6206 5.121811 AGATGAGTGCCATTATGACAAGAC 58.878 41.667 0.00 0.00 35.17 3.01
5865 6231 7.671398 AGGTCCTGAACATGATTAAGAAACATT 59.329 33.333 0.00 0.00 0.00 2.71
6164 6530 4.003648 CGTAGAAGAGCAGGTTTCCATTT 58.996 43.478 0.00 0.00 0.00 2.32
6229 6595 6.204108 AGGTAAAATAAAGTGTCACTGGTTCG 59.796 38.462 6.18 0.00 0.00 3.95
6231 6597 6.204108 CGAGGTAAAATAAAGTGTCACTGGTT 59.796 38.462 6.18 0.46 0.00 3.67
6242 6608 6.522165 GCGGAAGAAAACGAGGTAAAATAAAG 59.478 38.462 0.00 0.00 0.00 1.85
6247 6613 3.204526 TGCGGAAGAAAACGAGGTAAAA 58.795 40.909 0.00 0.00 0.00 1.52
6250 6616 1.614903 TCTGCGGAAGAAAACGAGGTA 59.385 47.619 0.00 0.00 29.54 3.08
6255 6621 4.750098 ACCATATATCTGCGGAAGAAAACG 59.250 41.667 0.00 0.00 38.79 3.60
6271 6637 3.020984 TGCGTGTGAGACAGACCATATA 58.979 45.455 0.00 0.00 0.00 0.86
6272 6638 1.824852 TGCGTGTGAGACAGACCATAT 59.175 47.619 0.00 0.00 0.00 1.78
6299 6665 5.768662 ACCTGAAATTGAGCATAGATCATGG 59.231 40.000 0.00 0.00 34.97 3.66
6395 6761 4.202441 GGTTGCAGTCATGGTGAAGATAT 58.798 43.478 0.00 0.00 0.00 1.63
6401 6767 0.036732 GAGGGTTGCAGTCATGGTGA 59.963 55.000 0.00 0.00 0.00 4.02
6539 6905 2.868044 GCCGATGGTTCCTAGCACATAG 60.868 54.545 0.00 0.00 34.03 2.23
6590 6956 2.964740 TCAGATTTCTCGTTCAGCCTG 58.035 47.619 0.00 0.00 0.00 4.85
6608 6974 3.488553 CGATACCGAAGCTGTACACATCA 60.489 47.826 0.00 0.00 38.22 3.07
6632 6998 1.298014 GGTGAGCAACTCCAGGAGG 59.702 63.158 21.31 4.87 33.35 4.30
6635 7001 2.046892 CCGGTGAGCAACTCCAGG 60.047 66.667 0.00 0.00 32.94 4.45
6653 7019 1.148310 CGTTGTCGACAGCCTTCATT 58.852 50.000 24.21 0.00 39.71 2.57
6703 7069 2.625314 TGAGACTCAGGAGTTCAGTGTG 59.375 50.000 0.00 0.00 42.66 3.82
6739 7106 4.177165 TGCACAATTCAATGACATGACC 57.823 40.909 0.00 0.00 0.00 4.02
6743 7110 3.007074 TGCCTTGCACAATTCAATGACAT 59.993 39.130 0.00 0.00 31.71 3.06
6745 7112 3.029320 TGCCTTGCACAATTCAATGAC 57.971 42.857 0.00 0.00 31.71 3.06
6781 7150 5.279384 ACGCGATCGATAAAAGATAGTTGT 58.721 37.500 21.57 0.00 39.41 3.32
6784 7153 7.303261 TCATAACGCGATCGATAAAAGATAGT 58.697 34.615 21.57 0.00 39.41 2.12
6785 7154 7.721167 TCATAACGCGATCGATAAAAGATAG 57.279 36.000 21.57 0.00 39.41 2.08
6813 7182 3.054582 ACACACAGGATGCTCAGATGATT 60.055 43.478 0.00 0.00 42.53 2.57
6814 7183 2.504585 ACACACAGGATGCTCAGATGAT 59.495 45.455 0.00 0.00 42.53 2.45
6815 7184 1.904537 ACACACAGGATGCTCAGATGA 59.095 47.619 0.00 0.00 42.53 2.92
6816 7185 2.398252 ACACACAGGATGCTCAGATG 57.602 50.000 0.00 0.00 42.53 2.90
6823 7234 4.123497 TCTACACATACACACAGGATGC 57.877 45.455 0.00 0.00 42.53 3.91
6826 7237 7.418337 ACATTATCTACACATACACACAGGA 57.582 36.000 0.00 0.00 0.00 3.86
6858 7269 0.598942 CCATCACCGTGTTGTCGTCA 60.599 55.000 8.44 0.00 0.00 4.35
7555 7969 3.522343 AGAAACCCTACGCCTATTTTCCT 59.478 43.478 0.00 0.00 0.00 3.36
7588 8002 2.816411 GCCATCCATCCATCCATCAAT 58.184 47.619 0.00 0.00 0.00 2.57
7589 8003 1.546099 CGCCATCCATCCATCCATCAA 60.546 52.381 0.00 0.00 0.00 2.57
7590 8004 0.037160 CGCCATCCATCCATCCATCA 59.963 55.000 0.00 0.00 0.00 3.07
7591 8005 1.310933 GCGCCATCCATCCATCCATC 61.311 60.000 0.00 0.00 0.00 3.51
7592 8006 1.303888 GCGCCATCCATCCATCCAT 60.304 57.895 0.00 0.00 0.00 3.41
7593 8007 2.113774 GCGCCATCCATCCATCCA 59.886 61.111 0.00 0.00 0.00 3.41
7594 8008 2.674380 GGCGCCATCCATCCATCC 60.674 66.667 24.80 0.00 0.00 3.51
7595 8009 0.896940 AATGGCGCCATCCATCCATC 60.897 55.000 40.38 3.35 45.64 3.51
7608 8022 0.962356 AGGGCTGAAGAACAATGGCG 60.962 55.000 0.00 0.00 0.00 5.69
7616 8030 6.721208 AGAACAAAATATGAAGGGCTGAAGAA 59.279 34.615 0.00 0.00 0.00 2.52
7622 8036 6.494835 AGAACAAGAACAAAATATGAAGGGCT 59.505 34.615 0.00 0.00 0.00 5.19
7623 8037 6.691508 AGAACAAGAACAAAATATGAAGGGC 58.308 36.000 0.00 0.00 0.00 5.19
7625 8039 8.143835 ACCAAGAACAAGAACAAAATATGAAGG 58.856 33.333 0.00 0.00 0.00 3.46
7627 8041 7.925483 CCACCAAGAACAAGAACAAAATATGAA 59.075 33.333 0.00 0.00 0.00 2.57
7628 8042 7.069331 ACCACCAAGAACAAGAACAAAATATGA 59.931 33.333 0.00 0.00 0.00 2.15
7630 8044 7.147742 ACACCACCAAGAACAAGAACAAAATAT 60.148 33.333 0.00 0.00 0.00 1.28
7632 8046 5.046663 ACACCACCAAGAACAAGAACAAAAT 60.047 36.000 0.00 0.00 0.00 1.82
7633 8047 4.282195 ACACCACCAAGAACAAGAACAAAA 59.718 37.500 0.00 0.00 0.00 2.44
7634 8048 3.829601 ACACCACCAAGAACAAGAACAAA 59.170 39.130 0.00 0.00 0.00 2.83
7637 8063 3.442273 TCAACACCACCAAGAACAAGAAC 59.558 43.478 0.00 0.00 0.00 3.01
7643 8069 3.820467 TGATCATCAACACCACCAAGAAC 59.180 43.478 0.00 0.00 0.00 3.01
7676 8102 1.452833 GAACTCTGCCCTCCATGCC 60.453 63.158 0.00 0.00 0.00 4.40
7734 8174 0.704076 TTGCTAGGGGCTTTCATGGT 59.296 50.000 0.00 0.00 42.39 3.55
7779 8219 3.306472 AGTATCTCTCCCTCTGGTCAC 57.694 52.381 0.00 0.00 0.00 3.67
7817 8263 2.842496 ACCCATCATCATCATCGGCTAT 59.158 45.455 0.00 0.00 0.00 2.97
7818 8264 2.259917 ACCCATCATCATCATCGGCTA 58.740 47.619 0.00 0.00 0.00 3.93
7819 8265 1.062364 ACCCATCATCATCATCGGCT 58.938 50.000 0.00 0.00 0.00 5.52
7821 8267 3.413846 AGAACCCATCATCATCATCGG 57.586 47.619 0.00 0.00 0.00 4.18
7823 8269 4.722220 TCCAAGAACCCATCATCATCATC 58.278 43.478 0.00 0.00 0.00 2.92
7824 8270 4.801521 TCCAAGAACCCATCATCATCAT 57.198 40.909 0.00 0.00 0.00 2.45
7825 8271 4.446745 GGATCCAAGAACCCATCATCATCA 60.447 45.833 6.95 0.00 0.00 3.07
7871 8317 2.203351 GGGCATGGGGTTCGATCC 60.203 66.667 3.76 3.76 0.00 3.36
7976 8426 2.749466 GCATAGCAGCAAACTCCCCATA 60.749 50.000 0.00 0.00 0.00 2.74
7977 8427 2.025863 GCATAGCAGCAAACTCCCCAT 61.026 52.381 0.00 0.00 0.00 4.00
7978 8428 0.680921 GCATAGCAGCAAACTCCCCA 60.681 55.000 0.00 0.00 0.00 4.96
7979 8429 0.394899 AGCATAGCAGCAAACTCCCC 60.395 55.000 0.00 0.00 36.85 4.81
7980 8430 0.737219 CAGCATAGCAGCAAACTCCC 59.263 55.000 0.00 0.00 36.85 4.30
7981 8431 1.131883 CACAGCATAGCAGCAAACTCC 59.868 52.381 0.00 0.00 36.85 3.85
8004 8454 0.589229 CTACAAGCTACGTCGCTCCG 60.589 60.000 15.59 11.86 39.86 4.63
8006 8456 0.248539 CCCTACAAGCTACGTCGCTC 60.249 60.000 15.59 0.00 39.86 5.03
8011 8461 0.606604 CACCACCCTACAAGCTACGT 59.393 55.000 0.00 0.00 0.00 3.57
8060 8513 2.482142 GCAGCTACCCTACACTGATGTC 60.482 54.545 0.00 0.00 40.48 3.06
8102 8568 9.712305 AGCAGACATATAGTAAATTGATACACC 57.288 33.333 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.