Multiple sequence alignment - TraesCS7D01G059000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G059000 | chr7D | 100.000 | 6183 | 0 | 0 | 1 | 6183 | 31954321 | 31948139 | 0.000000e+00 | 11418.0 |
1 | TraesCS7D01G059000 | chr7D | 85.522 | 297 | 37 | 4 | 1904 | 2195 | 31960774 | 31960479 | 7.790000e-79 | 305.0 |
2 | TraesCS7D01G059000 | chr7D | 90.708 | 226 | 19 | 2 | 4098 | 4323 | 31959357 | 31959134 | 3.620000e-77 | 300.0 |
3 | TraesCS7D01G059000 | chr7D | 83.849 | 291 | 43 | 3 | 1909 | 2195 | 32004475 | 32004185 | 2.200000e-69 | 274.0 |
4 | TraesCS7D01G059000 | chr7D | 81.921 | 177 | 22 | 6 | 247 | 418 | 571880227 | 571880398 | 2.320000e-29 | 141.0 |
5 | TraesCS7D01G059000 | chr4A | 93.299 | 1940 | 78 | 12 | 369 | 2302 | 696000341 | 696002234 | 0.000000e+00 | 2815.0 |
6 | TraesCS7D01G059000 | chr4A | 97.271 | 1319 | 35 | 1 | 2386 | 3704 | 696002248 | 696003565 | 0.000000e+00 | 2235.0 |
7 | TraesCS7D01G059000 | chr4A | 91.171 | 1563 | 112 | 15 | 4644 | 6183 | 696004423 | 696005982 | 0.000000e+00 | 2098.0 |
8 | TraesCS7D01G059000 | chr4A | 94.055 | 841 | 37 | 10 | 3700 | 4531 | 696003590 | 696004426 | 0.000000e+00 | 1264.0 |
9 | TraesCS7D01G059000 | chr4A | 91.124 | 338 | 19 | 6 | 1 | 335 | 696000033 | 696000362 | 1.220000e-121 | 448.0 |
10 | TraesCS7D01G059000 | chr4A | 86.782 | 174 | 17 | 4 | 242 | 411 | 80843708 | 80843879 | 8.180000e-44 | 189.0 |
11 | TraesCS7D01G059000 | chr4A | 90.196 | 102 | 6 | 3 | 2287 | 2386 | 456485724 | 456485625 | 5.030000e-26 | 130.0 |
12 | TraesCS7D01G059000 | chr4A | 90.196 | 102 | 6 | 3 | 2287 | 2386 | 456486231 | 456486132 | 5.030000e-26 | 130.0 |
13 | TraesCS7D01G059000 | chr4A | 90.196 | 102 | 6 | 3 | 2287 | 2386 | 456486529 | 456486430 | 5.030000e-26 | 130.0 |
14 | TraesCS7D01G059000 | chr4A | 90.196 | 102 | 6 | 3 | 2287 | 2386 | 456487026 | 456486927 | 5.030000e-26 | 130.0 |
15 | TraesCS7D01G059000 | chr4A | 90.196 | 102 | 6 | 3 | 2287 | 2386 | 456487324 | 456487225 | 5.030000e-26 | 130.0 |
16 | TraesCS7D01G059000 | chr7A | 98.154 | 1354 | 22 | 1 | 3181 | 4531 | 32028060 | 32026707 | 0.000000e+00 | 2359.0 |
17 | TraesCS7D01G059000 | chr7A | 91.205 | 1569 | 106 | 13 | 4644 | 6183 | 32026710 | 32025145 | 0.000000e+00 | 2104.0 |
18 | TraesCS7D01G059000 | chr7A | 95.177 | 933 | 38 | 4 | 1377 | 2302 | 32029738 | 32028806 | 0.000000e+00 | 1467.0 |
19 | TraesCS7D01G059000 | chr7A | 97.271 | 733 | 18 | 2 | 2386 | 3117 | 32028792 | 32028061 | 0.000000e+00 | 1242.0 |
20 | TraesCS7D01G059000 | chr7A | 91.626 | 609 | 39 | 7 | 851 | 1453 | 32030318 | 32029716 | 0.000000e+00 | 832.0 |
21 | TraesCS7D01G059000 | chr7A | 93.058 | 533 | 23 | 6 | 3926 | 4454 | 32303224 | 32302702 | 0.000000e+00 | 767.0 |
22 | TraesCS7D01G059000 | chr7A | 82.952 | 393 | 50 | 11 | 413 | 801 | 32030713 | 32030334 | 7.680000e-89 | 339.0 |
23 | TraesCS7D01G059000 | chr7A | 85.811 | 296 | 37 | 2 | 1904 | 2195 | 32037196 | 32036902 | 6.020000e-80 | 309.0 |
24 | TraesCS7D01G059000 | chr7A | 85.135 | 296 | 38 | 3 | 1904 | 2195 | 32295512 | 32295219 | 1.300000e-76 | 298.0 |
25 | TraesCS7D01G059000 | chr7A | 90.265 | 226 | 20 | 2 | 4098 | 4323 | 32294094 | 32293871 | 1.690000e-75 | 294.0 |
26 | TraesCS7D01G059000 | chr7A | 90.741 | 216 | 19 | 1 | 4096 | 4311 | 32035778 | 32035564 | 2.820000e-73 | 287.0 |
27 | TraesCS7D01G059000 | chr7A | 86.316 | 95 | 11 | 2 | 2104 | 2197 | 32129255 | 32129162 | 1.100000e-17 | 102.0 |
28 | TraesCS7D01G059000 | chr3B | 85.042 | 361 | 51 | 2 | 3272 | 3629 | 713873021 | 713872661 | 1.270000e-96 | 364.0 |
29 | TraesCS7D01G059000 | chrUn | 84.488 | 361 | 53 | 2 | 3272 | 3629 | 176720599 | 176720959 | 2.740000e-93 | 353.0 |
30 | TraesCS7D01G059000 | chrUn | 84.488 | 361 | 53 | 2 | 3272 | 3629 | 176754928 | 176755288 | 2.740000e-93 | 353.0 |
31 | TraesCS7D01G059000 | chrUn | 84.488 | 361 | 53 | 2 | 3272 | 3629 | 238522529 | 238522169 | 2.740000e-93 | 353.0 |
32 | TraesCS7D01G059000 | chrUn | 84.488 | 361 | 53 | 2 | 3272 | 3629 | 238536638 | 238536278 | 2.740000e-93 | 353.0 |
33 | TraesCS7D01G059000 | chrUn | 84.488 | 361 | 53 | 2 | 3272 | 3629 | 271021410 | 271021050 | 2.740000e-93 | 353.0 |
34 | TraesCS7D01G059000 | chrUn | 84.488 | 361 | 53 | 2 | 3272 | 3629 | 278813470 | 278813830 | 2.740000e-93 | 353.0 |
35 | TraesCS7D01G059000 | chrUn | 84.828 | 290 | 42 | 2 | 1909 | 2197 | 298011876 | 298011588 | 2.180000e-74 | 291.0 |
36 | TraesCS7D01G059000 | chrUn | 90.000 | 220 | 21 | 1 | 4097 | 4316 | 298010447 | 298010229 | 3.650000e-72 | 283.0 |
37 | TraesCS7D01G059000 | chrUn | 88.158 | 228 | 24 | 1 | 5565 | 5789 | 235799321 | 235799094 | 1.020000e-67 | 268.0 |
38 | TraesCS7D01G059000 | chrUn | 85.892 | 241 | 34 | 0 | 1904 | 2144 | 238523476 | 238523236 | 2.210000e-64 | 257.0 |
39 | TraesCS7D01G059000 | chrUn | 85.892 | 241 | 34 | 0 | 1904 | 2144 | 238537585 | 238537345 | 2.210000e-64 | 257.0 |
40 | TraesCS7D01G059000 | chr6A | 85.532 | 235 | 30 | 3 | 5565 | 5795 | 48550179 | 48549945 | 6.190000e-60 | 243.0 |
41 | TraesCS7D01G059000 | chr6A | 97.458 | 118 | 3 | 0 | 4530 | 4647 | 277889801 | 277889684 | 1.050000e-47 | 202.0 |
42 | TraesCS7D01G059000 | chr6D | 85.784 | 204 | 21 | 4 | 5589 | 5792 | 298139321 | 298139516 | 6.280000e-50 | 209.0 |
43 | TraesCS7D01G059000 | chr6D | 81.006 | 179 | 30 | 2 | 5864 | 6042 | 298139551 | 298139725 | 8.360000e-29 | 139.0 |
44 | TraesCS7D01G059000 | chr4D | 98.305 | 118 | 2 | 0 | 4530 | 4647 | 494875912 | 494876029 | 2.260000e-49 | 207.0 |
45 | TraesCS7D01G059000 | chr4D | 96.667 | 120 | 4 | 0 | 4529 | 4648 | 55352440 | 55352559 | 3.780000e-47 | 200.0 |
46 | TraesCS7D01G059000 | chr3D | 94.656 | 131 | 7 | 0 | 4517 | 4647 | 107670950 | 107671080 | 2.920000e-48 | 204.0 |
47 | TraesCS7D01G059000 | chr3D | 81.421 | 183 | 20 | 2 | 244 | 412 | 247891103 | 247891285 | 3.010000e-28 | 137.0 |
48 | TraesCS7D01G059000 | chr2A | 97.458 | 118 | 3 | 0 | 4530 | 4647 | 606523687 | 606523804 | 1.050000e-47 | 202.0 |
49 | TraesCS7D01G059000 | chr2A | 91.753 | 97 | 7 | 1 | 2291 | 2386 | 223717152 | 223717248 | 3.890000e-27 | 134.0 |
50 | TraesCS7D01G059000 | chr2A | 93.023 | 86 | 6 | 0 | 2301 | 2386 | 334889671 | 334889586 | 6.510000e-25 | 126.0 |
51 | TraesCS7D01G059000 | chr1D | 95.312 | 128 | 5 | 1 | 4520 | 4647 | 28576525 | 28576651 | 1.050000e-47 | 202.0 |
52 | TraesCS7D01G059000 | chr1A | 95.902 | 122 | 5 | 0 | 4528 | 4649 | 208212531 | 208212652 | 1.360000e-46 | 198.0 |
53 | TraesCS7D01G059000 | chr1A | 96.610 | 118 | 4 | 0 | 4530 | 4647 | 498452668 | 498452785 | 4.890000e-46 | 196.0 |
54 | TraesCS7D01G059000 | chr1B | 94.531 | 128 | 5 | 2 | 4523 | 4648 | 8855858 | 8855985 | 4.890000e-46 | 196.0 |
55 | TraesCS7D01G059000 | chr1B | 87.407 | 135 | 11 | 4 | 247 | 377 | 462515418 | 462515550 | 3.860000e-32 | 150.0 |
56 | TraesCS7D01G059000 | chr1B | 81.006 | 179 | 30 | 2 | 5864 | 6042 | 253825118 | 253825292 | 8.360000e-29 | 139.0 |
57 | TraesCS7D01G059000 | chr1B | 78.283 | 198 | 15 | 11 | 238 | 409 | 470001617 | 470001812 | 1.100000e-17 | 102.0 |
58 | TraesCS7D01G059000 | chr1B | 91.304 | 46 | 2 | 2 | 372 | 415 | 297098077 | 297098122 | 1.860000e-05 | 62.1 |
59 | TraesCS7D01G059000 | chr2B | 87.356 | 174 | 15 | 5 | 244 | 412 | 602995418 | 602995247 | 6.330000e-45 | 193.0 |
60 | TraesCS7D01G059000 | chr2B | 90.756 | 119 | 7 | 3 | 253 | 367 | 389460772 | 389460890 | 8.300000e-34 | 156.0 |
61 | TraesCS7D01G059000 | chr2B | 81.564 | 179 | 25 | 3 | 5864 | 6042 | 13184341 | 13184171 | 2.320000e-29 | 141.0 |
62 | TraesCS7D01G059000 | chr2B | 90.196 | 102 | 6 | 3 | 2285 | 2386 | 675339753 | 675339850 | 5.030000e-26 | 130.0 |
63 | TraesCS7D01G059000 | chr2B | 85.714 | 119 | 14 | 2 | 5680 | 5795 | 745508432 | 745508314 | 8.420000e-24 | 122.0 |
64 | TraesCS7D01G059000 | chr2B | 86.076 | 79 | 11 | 0 | 5566 | 5644 | 745508512 | 745508434 | 1.100000e-12 | 86.1 |
65 | TraesCS7D01G059000 | chr5B | 87.943 | 141 | 10 | 5 | 242 | 377 | 433527161 | 433527299 | 6.420000e-35 | 159.0 |
66 | TraesCS7D01G059000 | chr5A | 87.770 | 139 | 11 | 4 | 247 | 381 | 363848613 | 363848749 | 2.310000e-34 | 158.0 |
67 | TraesCS7D01G059000 | chr3A | 88.636 | 132 | 9 | 4 | 250 | 377 | 494032690 | 494032561 | 8.300000e-34 | 156.0 |
68 | TraesCS7D01G059000 | chr3A | 80.328 | 183 | 21 | 3 | 244 | 412 | 256240019 | 256240200 | 2.340000e-24 | 124.0 |
69 | TraesCS7D01G059000 | chr5D | 87.500 | 136 | 11 | 5 | 246 | 377 | 187954496 | 187954363 | 1.070000e-32 | 152.0 |
70 | TraesCS7D01G059000 | chr7B | 93.548 | 93 | 5 | 1 | 2294 | 2386 | 690699598 | 690699507 | 3.010000e-28 | 137.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G059000 | chr7D | 31948139 | 31954321 | 6182 | True | 11418.0 | 11418 | 100.000000 | 1 | 6183 | 1 | chr7D.!!$R1 | 6182 |
1 | TraesCS7D01G059000 | chr7D | 31959134 | 31960774 | 1640 | True | 302.5 | 305 | 88.115000 | 1904 | 4323 | 2 | chr7D.!!$R3 | 2419 |
2 | TraesCS7D01G059000 | chr4A | 696000033 | 696005982 | 5949 | False | 1772.0 | 2815 | 93.384000 | 1 | 6183 | 5 | chr4A.!!$F2 | 6182 |
3 | TraesCS7D01G059000 | chr7A | 32025145 | 32030713 | 5568 | True | 1390.5 | 2359 | 92.730833 | 413 | 6183 | 6 | chr7A.!!$R3 | 5770 |
4 | TraesCS7D01G059000 | chr7A | 32302702 | 32303224 | 522 | True | 767.0 | 767 | 93.058000 | 3926 | 4454 | 1 | chr7A.!!$R2 | 528 |
5 | TraesCS7D01G059000 | chr7A | 32035564 | 32037196 | 1632 | True | 298.0 | 309 | 88.276000 | 1904 | 4311 | 2 | chr7A.!!$R4 | 2407 |
6 | TraesCS7D01G059000 | chr7A | 32293871 | 32295512 | 1641 | True | 296.0 | 298 | 87.700000 | 1904 | 4323 | 2 | chr7A.!!$R5 | 2419 |
7 | TraesCS7D01G059000 | chrUn | 238522169 | 238523476 | 1307 | True | 305.0 | 353 | 85.190000 | 1904 | 3629 | 2 | chrUn.!!$R3 | 1725 |
8 | TraesCS7D01G059000 | chrUn | 238536278 | 238537585 | 1307 | True | 305.0 | 353 | 85.190000 | 1904 | 3629 | 2 | chrUn.!!$R4 | 1725 |
9 | TraesCS7D01G059000 | chrUn | 298010229 | 298011876 | 1647 | True | 287.0 | 291 | 87.414000 | 1909 | 4316 | 2 | chrUn.!!$R5 | 2407 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
70 | 71 | 0.179129 | GACTGCCAATCCAATTGCGG | 60.179 | 55.000 | 0.00 | 0.00 | 38.92 | 5.69 | F |
1049 | 1064 | 0.321021 | CAGCTCTCCTCTGTTGCTGT | 59.679 | 55.000 | 0.00 | 0.00 | 44.04 | 4.40 | F |
1795 | 1895 | 0.036765 | TACAGGCTAGTTGGGTTGCG | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 | F |
2368 | 2493 | 0.039180 | GGGAAGGGTCCGACCATTTT | 59.961 | 55.000 | 18.14 | 9.49 | 43.04 | 1.82 | F |
2371 | 2496 | 0.251608 | AAGGGTCCGACCATTTTGGG | 60.252 | 55.000 | 19.43 | 0.00 | 39.55 | 4.12 | F |
2372 | 2497 | 1.076014 | GGGTCCGACCATTTTGGGT | 59.924 | 57.895 | 19.43 | 0.00 | 43.37 | 4.51 | F |
2503 | 2640 | 1.939934 | TGCAAAGTTCAGAGACCAACG | 59.060 | 47.619 | 0.00 | 0.00 | 0.00 | 4.10 | F |
3254 | 3410 | 3.567164 | ACAAAGCTGCATATACCATGCTC | 59.433 | 43.478 | 10.30 | 3.16 | 44.79 | 4.26 | F |
3893 | 4085 | 3.574826 | GGGAGTAGGATTGTAGCTGTAGG | 59.425 | 52.174 | 0.00 | 0.00 | 0.00 | 3.18 | F |
4561 | 4763 | 0.039165 | CGGAAAAGCTTGTCCCAAGC | 60.039 | 55.000 | 26.94 | 18.69 | 43.31 | 4.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1191 | 1206 | 0.531974 | GTTGACGAAGCACAGTCCCA | 60.532 | 55.000 | 0.00 | 0.00 | 36.61 | 4.37 | R |
2379 | 2504 | 0.034756 | TGAAAGCCTTGCTCTGCGTA | 59.965 | 50.000 | 0.00 | 0.00 | 38.25 | 4.42 | R |
3439 | 3595 | 0.991146 | TGGGGTTCTTGCAGAGCATA | 59.009 | 50.000 | 0.00 | 0.00 | 38.76 | 3.14 | R |
3816 | 4007 | 3.749088 | TGGGAAAGTGCATAAACTACGTG | 59.251 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 | R |
4184 | 4383 | 4.474303 | TTTCATTCTCCCCATGGCATAT | 57.526 | 40.909 | 6.09 | 0.00 | 0.00 | 1.78 | R |
4386 | 4585 | 3.371487 | CCTGTGCCTGACATAACCCAATA | 60.371 | 47.826 | 0.00 | 0.00 | 32.74 | 1.90 | R |
4514 | 4715 | 8.931568 | ACGGAGGGAGTACTTTATTTGTAATAT | 58.068 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 | R |
4539 | 4741 | 0.536460 | TGGGACAAGCTTTTCCGGAC | 60.536 | 55.000 | 22.30 | 11.43 | 31.92 | 4.79 | R |
4695 | 4898 | 0.587768 | TGCGCTTGATGTCAGTTGTG | 59.412 | 50.000 | 9.73 | 0.00 | 0.00 | 3.33 | R |
6111 | 6341 | 0.321653 | GTAACAGAGGGTGCACCAGG | 60.322 | 60.000 | 35.78 | 22.87 | 43.89 | 4.45 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
68 | 69 | 2.613691 | CTTGACTGCCAATCCAATTGC | 58.386 | 47.619 | 0.00 | 0.00 | 38.92 | 3.56 |
70 | 71 | 0.179129 | GACTGCCAATCCAATTGCGG | 60.179 | 55.000 | 0.00 | 0.00 | 38.92 | 5.69 |
113 | 114 | 1.884579 | CCAGTTTGCTGAACTCATGCT | 59.115 | 47.619 | 3.50 | 0.00 | 45.40 | 3.79 |
169 | 170 | 4.617253 | TCTTCAGCTTGCTGGTACTTAA | 57.383 | 40.909 | 20.62 | 7.25 | 0.00 | 1.85 |
210 | 211 | 3.306703 | CCAAAGACACAACACAACAATGC | 59.693 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
213 | 214 | 1.854126 | GACACAACACAACAATGCTGC | 59.146 | 47.619 | 0.00 | 0.00 | 0.00 | 5.25 |
242 | 244 | 1.284785 | CCCCCTCAAACATAGCAAGGA | 59.715 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
243 | 245 | 2.091665 | CCCCCTCAAACATAGCAAGGAT | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
244 | 246 | 2.954318 | CCCCTCAAACATAGCAAGGATG | 59.046 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
246 | 248 | 3.379372 | CCCTCAAACATAGCAAGGATGTG | 59.621 | 47.826 | 0.00 | 0.00 | 37.59 | 3.21 |
247 | 249 | 4.264253 | CCTCAAACATAGCAAGGATGTGA | 58.736 | 43.478 | 0.00 | 0.00 | 37.59 | 3.58 |
248 | 250 | 4.885907 | CCTCAAACATAGCAAGGATGTGAT | 59.114 | 41.667 | 0.00 | 0.00 | 37.59 | 3.06 |
249 | 251 | 5.220989 | CCTCAAACATAGCAAGGATGTGATG | 60.221 | 44.000 | 0.00 | 0.00 | 37.59 | 3.07 |
263 | 266 | 2.440980 | GATGGGGAGCCTTGGCAC | 60.441 | 66.667 | 14.54 | 7.49 | 0.00 | 5.01 |
273 | 276 | 1.801309 | GCCTTGGCACAGCGGTAAAA | 61.801 | 55.000 | 6.79 | 0.00 | 42.39 | 1.52 |
293 | 296 | 1.133823 | ACTGTTGCCTTGTGACCATGA | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
294 | 297 | 1.538512 | CTGTTGCCTTGTGACCATGAG | 59.461 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
295 | 298 | 0.883833 | GTTGCCTTGTGACCATGAGG | 59.116 | 55.000 | 0.00 | 0.00 | 42.21 | 3.86 |
307 | 310 | 2.566833 | CCATGAGGTCACAGGTTCAA | 57.433 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
313 | 316 | 2.897969 | GAGGTCACAGGTTCAAGTCCTA | 59.102 | 50.000 | 0.00 | 0.00 | 33.54 | 2.94 |
316 | 319 | 3.181458 | GGTCACAGGTTCAAGTCCTACAA | 60.181 | 47.826 | 0.00 | 0.00 | 33.54 | 2.41 |
317 | 320 | 3.808174 | GTCACAGGTTCAAGTCCTACAAC | 59.192 | 47.826 | 0.00 | 0.00 | 33.54 | 3.32 |
334 | 337 | 5.352569 | CCTACAACCTCTTGCAGAAATGTAG | 59.647 | 44.000 | 14.43 | 14.43 | 36.05 | 2.74 |
335 | 338 | 4.718961 | ACAACCTCTTGCAGAAATGTAGT | 58.281 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
336 | 339 | 4.516698 | ACAACCTCTTGCAGAAATGTAGTG | 59.483 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
337 | 340 | 4.623932 | ACCTCTTGCAGAAATGTAGTGA | 57.376 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
338 | 341 | 4.973168 | ACCTCTTGCAGAAATGTAGTGAA | 58.027 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
339 | 342 | 5.376625 | ACCTCTTGCAGAAATGTAGTGAAA | 58.623 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
340 | 343 | 5.471456 | ACCTCTTGCAGAAATGTAGTGAAAG | 59.529 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
341 | 344 | 5.106396 | CCTCTTGCAGAAATGTAGTGAAAGG | 60.106 | 44.000 | 0.00 | 0.00 | 28.98 | 3.11 |
342 | 345 | 4.216257 | TCTTGCAGAAATGTAGTGAAAGGC | 59.784 | 41.667 | 0.00 | 0.00 | 28.98 | 4.35 |
343 | 346 | 3.754965 | TGCAGAAATGTAGTGAAAGGCT | 58.245 | 40.909 | 0.00 | 0.00 | 0.00 | 4.58 |
344 | 347 | 3.503363 | TGCAGAAATGTAGTGAAAGGCTG | 59.497 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
345 | 348 | 3.671702 | GCAGAAATGTAGTGAAAGGCTGC | 60.672 | 47.826 | 0.00 | 0.00 | 39.28 | 5.25 |
346 | 349 | 3.503363 | CAGAAATGTAGTGAAAGGCTGCA | 59.497 | 43.478 | 0.50 | 0.00 | 33.44 | 4.41 |
347 | 350 | 3.503748 | AGAAATGTAGTGAAAGGCTGCAC | 59.496 | 43.478 | 11.56 | 11.56 | 31.82 | 4.57 |
348 | 351 | 2.566833 | ATGTAGTGAAAGGCTGCACA | 57.433 | 45.000 | 19.05 | 4.39 | 37.48 | 4.57 |
349 | 352 | 1.593196 | TGTAGTGAAAGGCTGCACAC | 58.407 | 50.000 | 19.05 | 14.46 | 37.48 | 3.82 |
350 | 353 | 1.134250 | TGTAGTGAAAGGCTGCACACA | 60.134 | 47.619 | 19.05 | 16.89 | 37.48 | 3.72 |
351 | 354 | 1.946768 | GTAGTGAAAGGCTGCACACAA | 59.053 | 47.619 | 19.05 | 5.39 | 37.48 | 3.33 |
352 | 355 | 1.473258 | AGTGAAAGGCTGCACACAAA | 58.527 | 45.000 | 19.05 | 0.00 | 37.48 | 2.83 |
353 | 356 | 1.824230 | AGTGAAAGGCTGCACACAAAA | 59.176 | 42.857 | 19.05 | 0.00 | 37.48 | 2.44 |
354 | 357 | 2.159198 | AGTGAAAGGCTGCACACAAAAG | 60.159 | 45.455 | 19.05 | 0.00 | 37.48 | 2.27 |
355 | 358 | 2.098614 | TGAAAGGCTGCACACAAAAGA | 58.901 | 42.857 | 0.50 | 0.00 | 0.00 | 2.52 |
356 | 359 | 2.159254 | TGAAAGGCTGCACACAAAAGAC | 60.159 | 45.455 | 0.50 | 0.00 | 0.00 | 3.01 |
357 | 360 | 0.746659 | AAGGCTGCACACAAAAGACC | 59.253 | 50.000 | 0.50 | 0.00 | 0.00 | 3.85 |
358 | 361 | 1.109323 | AGGCTGCACACAAAAGACCC | 61.109 | 55.000 | 0.50 | 0.00 | 0.00 | 4.46 |
359 | 362 | 1.391157 | GGCTGCACACAAAAGACCCA | 61.391 | 55.000 | 0.50 | 0.00 | 0.00 | 4.51 |
360 | 363 | 0.459489 | GCTGCACACAAAAGACCCAA | 59.541 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
361 | 364 | 1.134848 | GCTGCACACAAAAGACCCAAA | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
362 | 365 | 2.813061 | CTGCACACAAAAGACCCAAAG | 58.187 | 47.619 | 0.00 | 0.00 | 0.00 | 2.77 |
363 | 366 | 2.166254 | CTGCACACAAAAGACCCAAAGT | 59.834 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
364 | 367 | 2.094286 | TGCACACAAAAGACCCAAAGTG | 60.094 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
365 | 368 | 2.738321 | GCACACAAAAGACCCAAAGTGG | 60.738 | 50.000 | 0.00 | 0.00 | 37.25 | 4.00 |
366 | 369 | 2.495669 | CACACAAAAGACCCAAAGTGGT | 59.504 | 45.455 | 0.00 | 0.00 | 42.79 | 4.16 |
371 | 374 | 3.655481 | GACCCAAAGTGGTCGCAG | 58.345 | 61.111 | 0.00 | 0.00 | 44.98 | 5.18 |
372 | 375 | 1.070786 | GACCCAAAGTGGTCGCAGA | 59.929 | 57.895 | 0.00 | 0.00 | 44.98 | 4.26 |
393 | 396 | 2.047274 | TGCGCAAGTGGGAGCTAC | 60.047 | 61.111 | 8.16 | 0.00 | 41.68 | 3.58 |
409 | 412 | 3.177194 | TACGTGCACCAAGCTGCCT | 62.177 | 57.895 | 12.15 | 0.00 | 45.94 | 4.75 |
481 | 486 | 2.789409 | AAGTCCTAAGACCACATGCC | 57.211 | 50.000 | 0.00 | 0.00 | 44.72 | 4.40 |
482 | 487 | 1.656587 | AGTCCTAAGACCACATGCCA | 58.343 | 50.000 | 0.00 | 0.00 | 44.72 | 4.92 |
483 | 488 | 1.556911 | AGTCCTAAGACCACATGCCAG | 59.443 | 52.381 | 0.00 | 0.00 | 44.72 | 4.85 |
484 | 489 | 1.279271 | GTCCTAAGACCACATGCCAGT | 59.721 | 52.381 | 0.00 | 0.00 | 37.00 | 4.00 |
485 | 490 | 1.278985 | TCCTAAGACCACATGCCAGTG | 59.721 | 52.381 | 0.00 | 0.00 | 39.21 | 3.66 |
486 | 491 | 1.278985 | CCTAAGACCACATGCCAGTGA | 59.721 | 52.381 | 7.16 | 0.00 | 42.05 | 3.41 |
487 | 492 | 2.625737 | CTAAGACCACATGCCAGTGAG | 58.374 | 52.381 | 7.16 | 1.11 | 42.05 | 3.51 |
488 | 493 | 0.767375 | AAGACCACATGCCAGTGAGT | 59.233 | 50.000 | 7.16 | 3.93 | 42.05 | 3.41 |
561 | 567 | 3.698539 | TGAATCTTCAACACAGTTGCCAA | 59.301 | 39.130 | 5.06 | 0.00 | 33.55 | 4.52 |
563 | 569 | 3.713858 | TCTTCAACACAGTTGCCAATG | 57.286 | 42.857 | 5.06 | 0.00 | 0.00 | 2.82 |
566 | 572 | 3.921119 | TCAACACAGTTGCCAATGATC | 57.079 | 42.857 | 5.06 | 0.00 | 0.00 | 2.92 |
625 | 631 | 7.176865 | CACTATCTTGGTCTTCCCGATTAGATA | 59.823 | 40.741 | 0.00 | 0.00 | 35.15 | 1.98 |
819 | 828 | 4.082787 | AGCCATTTGAATAGTTTGACCACG | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
846 | 855 | 3.646162 | TGCCCACTTACTATCATACAGGG | 59.354 | 47.826 | 0.00 | 0.00 | 36.85 | 4.45 |
849 | 858 | 4.503296 | CCCACTTACTATCATACAGGGCAC | 60.503 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1041 | 1056 | 1.688884 | GGCTTCCCAGCTCTCCTCT | 60.689 | 63.158 | 0.00 | 0.00 | 46.44 | 3.69 |
1049 | 1064 | 0.321021 | CAGCTCTCCTCTGTTGCTGT | 59.679 | 55.000 | 0.00 | 0.00 | 44.04 | 4.40 |
1177 | 1192 | 2.596851 | GCCCAGAGAGCCCAAGACA | 61.597 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
1191 | 1206 | 2.045926 | GACAGGCCACCGCTCATT | 60.046 | 61.111 | 5.01 | 0.00 | 34.44 | 2.57 |
1236 | 1251 | 6.319658 | TGAAGAACTTTGACAAGCTCTTTGAT | 59.680 | 34.615 | 8.86 | 0.00 | 42.89 | 2.57 |
1375 | 1390 | 8.188799 | TCAGTAAATACAGTAAGGTGATTCTCG | 58.811 | 37.037 | 0.00 | 0.00 | 0.00 | 4.04 |
1539 | 1610 | 9.511272 | TCCTGAAGATTTATACAATGGATGATG | 57.489 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
1662 | 1762 | 6.423905 | TCAGCTGACAGTTATTAAGTTCACAC | 59.576 | 38.462 | 13.74 | 0.00 | 0.00 | 3.82 |
1663 | 1763 | 6.202762 | CAGCTGACAGTTATTAAGTTCACACA | 59.797 | 38.462 | 8.42 | 0.00 | 0.00 | 3.72 |
1664 | 1764 | 6.202954 | AGCTGACAGTTATTAAGTTCACACAC | 59.797 | 38.462 | 3.99 | 0.00 | 0.00 | 3.82 |
1665 | 1765 | 6.018262 | GCTGACAGTTATTAAGTTCACACACA | 60.018 | 38.462 | 3.99 | 0.00 | 0.00 | 3.72 |
1666 | 1766 | 7.241663 | TGACAGTTATTAAGTTCACACACAC | 57.758 | 36.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1667 | 1767 | 6.819146 | TGACAGTTATTAAGTTCACACACACA | 59.181 | 34.615 | 0.00 | 0.00 | 0.00 | 3.72 |
1668 | 1768 | 7.334671 | TGACAGTTATTAAGTTCACACACACAA | 59.665 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
1669 | 1769 | 8.220755 | ACAGTTATTAAGTTCACACACACAAT | 57.779 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
1670 | 1770 | 8.342634 | ACAGTTATTAAGTTCACACACACAATC | 58.657 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
1671 | 1771 | 8.559536 | CAGTTATTAAGTTCACACACACAATCT | 58.440 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
1672 | 1772 | 9.772973 | AGTTATTAAGTTCACACACACAATCTA | 57.227 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
1673 | 1773 | 9.807386 | GTTATTAAGTTCACACACACAATCTAC | 57.193 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
1674 | 1774 | 9.772973 | TTATTAAGTTCACACACACAATCTACT | 57.227 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
1675 | 1775 | 7.709269 | TTAAGTTCACACACACAATCTACTC | 57.291 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1676 | 1776 | 5.276461 | AGTTCACACACACAATCTACTCA | 57.724 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1677 | 1777 | 5.858381 | AGTTCACACACACAATCTACTCAT | 58.142 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
1678 | 1778 | 6.993079 | AGTTCACACACACAATCTACTCATA | 58.007 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
1679 | 1779 | 7.093354 | AGTTCACACACACAATCTACTCATAG | 58.907 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
1680 | 1780 | 6.590234 | TCACACACACAATCTACTCATAGT | 57.410 | 37.500 | 0.00 | 0.00 | 0.00 | 2.12 |
1681 | 1781 | 6.389906 | TCACACACACAATCTACTCATAGTG | 58.610 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1682 | 1782 | 5.062683 | CACACACACAATCTACTCATAGTGC | 59.937 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1683 | 1783 | 5.170748 | CACACACAATCTACTCATAGTGCA | 58.829 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
1684 | 1784 | 5.639082 | CACACACAATCTACTCATAGTGCAA | 59.361 | 40.000 | 0.00 | 0.00 | 0.00 | 4.08 |
1685 | 1785 | 6.314648 | CACACACAATCTACTCATAGTGCAAT | 59.685 | 38.462 | 0.00 | 0.00 | 0.00 | 3.56 |
1686 | 1786 | 7.492344 | CACACACAATCTACTCATAGTGCAATA | 59.508 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
1687 | 1787 | 7.492669 | ACACACAATCTACTCATAGTGCAATAC | 59.507 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
1688 | 1788 | 7.492344 | CACACAATCTACTCATAGTGCAATACA | 59.508 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
1774 | 1874 | 6.965607 | AGGCAGCTATTAACCTTAAACCTAA | 58.034 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1795 | 1895 | 0.036765 | TACAGGCTAGTTGGGTTGCG | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1823 | 1923 | 7.947282 | TGTTTTACCCCTACAAGAAAAAGATG | 58.053 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
2326 | 2451 | 2.360600 | GGCAACCCGGTGCATGTA | 60.361 | 61.111 | 17.82 | 0.00 | 46.81 | 2.29 |
2327 | 2452 | 2.406616 | GGCAACCCGGTGCATGTAG | 61.407 | 63.158 | 17.82 | 0.00 | 46.81 | 2.74 |
2328 | 2453 | 3.051392 | GCAACCCGGTGCATGTAGC | 62.051 | 63.158 | 11.92 | 2.56 | 44.29 | 3.58 |
2329 | 2454 | 1.377202 | CAACCCGGTGCATGTAGCT | 60.377 | 57.895 | 11.25 | 0.00 | 45.94 | 3.32 |
2330 | 2455 | 1.078426 | AACCCGGTGCATGTAGCTC | 60.078 | 57.895 | 11.25 | 0.00 | 45.94 | 4.09 |
2336 | 2461 | 1.450312 | GTGCATGTAGCTCCCGCTT | 60.450 | 57.895 | 0.00 | 0.00 | 46.47 | 4.68 |
2337 | 2462 | 1.450134 | TGCATGTAGCTCCCGCTTG | 60.450 | 57.895 | 0.00 | 0.00 | 46.47 | 4.01 |
2338 | 2463 | 2.828128 | GCATGTAGCTCCCGCTTGC | 61.828 | 63.158 | 0.00 | 0.00 | 46.47 | 4.01 |
2339 | 2464 | 2.202932 | ATGTAGCTCCCGCTTGCG | 60.203 | 61.111 | 8.14 | 8.14 | 46.47 | 4.85 |
2342 | 2467 | 4.819761 | TAGCTCCCGCTTGCGCAG | 62.820 | 66.667 | 11.31 | 6.32 | 46.47 | 5.18 |
2358 | 2483 | 4.735599 | AGGGTCCGGGGAAGGGTC | 62.736 | 72.222 | 0.00 | 0.00 | 0.00 | 4.46 |
2365 | 2490 | 2.691252 | GGGGAAGGGTCCGACCAT | 60.691 | 66.667 | 19.43 | 9.67 | 46.04 | 3.55 |
2366 | 2491 | 2.306384 | GGGGAAGGGTCCGACCATT | 61.306 | 63.158 | 17.19 | 17.19 | 46.04 | 3.16 |
2367 | 2492 | 1.689412 | GGGAAGGGTCCGACCATTT | 59.311 | 57.895 | 18.14 | 11.86 | 43.04 | 2.32 |
2368 | 2493 | 0.039180 | GGGAAGGGTCCGACCATTTT | 59.961 | 55.000 | 18.14 | 9.49 | 43.04 | 1.82 |
2369 | 2494 | 1.173913 | GGAAGGGTCCGACCATTTTG | 58.826 | 55.000 | 18.14 | 0.00 | 43.04 | 2.44 |
2370 | 2495 | 1.173913 | GAAGGGTCCGACCATTTTGG | 58.826 | 55.000 | 18.14 | 0.00 | 43.04 | 3.28 |
2371 | 2496 | 0.251608 | AAGGGTCCGACCATTTTGGG | 60.252 | 55.000 | 19.43 | 0.00 | 39.55 | 4.12 |
2372 | 2497 | 1.076014 | GGGTCCGACCATTTTGGGT | 59.924 | 57.895 | 19.43 | 0.00 | 43.37 | 4.51 |
2383 | 2508 | 3.754850 | ACCATTTTGGGTCTTTAGTACGC | 59.245 | 43.478 | 0.00 | 0.00 | 43.37 | 4.42 |
2384 | 2509 | 3.754323 | CCATTTTGGGTCTTTAGTACGCA | 59.246 | 43.478 | 0.00 | 0.00 | 37.94 | 5.24 |
2503 | 2640 | 1.939934 | TGCAAAGTTCAGAGACCAACG | 59.060 | 47.619 | 0.00 | 0.00 | 0.00 | 4.10 |
2981 | 3137 | 6.429692 | TGGCATTGAAATAGATATTGGTACCG | 59.570 | 38.462 | 7.57 | 0.00 | 0.00 | 4.02 |
3117 | 3273 | 4.640771 | AGTACAATGTTGGTCATCTGGT | 57.359 | 40.909 | 0.00 | 0.00 | 35.48 | 4.00 |
3170 | 3326 | 7.756395 | ATGATGTGCTTTATAAATCTGGAGG | 57.244 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3192 | 3348 | 4.574013 | GGAAGTTCAGAATATGGTCAGCTG | 59.426 | 45.833 | 7.63 | 7.63 | 0.00 | 4.24 |
3254 | 3410 | 3.567164 | ACAAAGCTGCATATACCATGCTC | 59.433 | 43.478 | 10.30 | 3.16 | 44.79 | 4.26 |
3267 | 3423 | 9.822185 | CATATACCATGCTCTATTAACTATGCA | 57.178 | 33.333 | 0.00 | 0.00 | 34.88 | 3.96 |
3439 | 3595 | 8.806146 | GCAAATACCCTATCATGGTTCATTTAT | 58.194 | 33.333 | 0.00 | 0.00 | 37.31 | 1.40 |
3893 | 4085 | 3.574826 | GGGAGTAGGATTGTAGCTGTAGG | 59.425 | 52.174 | 0.00 | 0.00 | 0.00 | 3.18 |
4514 | 4715 | 9.677567 | GTTGTTAAGACAGAAAATCAAGCATTA | 57.322 | 29.630 | 0.00 | 0.00 | 37.04 | 1.90 |
4540 | 4742 | 6.610075 | TTACAAATAAAGTACTCCCTCCGT | 57.390 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
4541 | 4743 | 5.082251 | ACAAATAAAGTACTCCCTCCGTC | 57.918 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
4542 | 4744 | 4.081254 | ACAAATAAAGTACTCCCTCCGTCC | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
4543 | 4745 | 1.755179 | TAAAGTACTCCCTCCGTCCG | 58.245 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4544 | 4746 | 0.969409 | AAAGTACTCCCTCCGTCCGG | 60.969 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4545 | 4747 | 1.856539 | AAGTACTCCCTCCGTCCGGA | 61.857 | 60.000 | 0.00 | 0.00 | 42.90 | 5.14 |
4546 | 4748 | 1.379044 | GTACTCCCTCCGTCCGGAA | 60.379 | 63.158 | 5.23 | 0.00 | 44.66 | 4.30 |
4547 | 4749 | 0.967380 | GTACTCCCTCCGTCCGGAAA | 60.967 | 60.000 | 5.23 | 0.00 | 44.66 | 3.13 |
4548 | 4750 | 0.251742 | TACTCCCTCCGTCCGGAAAA | 60.252 | 55.000 | 5.23 | 0.00 | 44.66 | 2.29 |
4549 | 4751 | 1.218316 | CTCCCTCCGTCCGGAAAAG | 59.782 | 63.158 | 5.23 | 3.59 | 44.66 | 2.27 |
4550 | 4752 | 2.436115 | CCCTCCGTCCGGAAAAGC | 60.436 | 66.667 | 5.23 | 0.00 | 44.66 | 3.51 |
4551 | 4753 | 2.663196 | CCTCCGTCCGGAAAAGCT | 59.337 | 61.111 | 5.23 | 0.00 | 44.66 | 3.74 |
4552 | 4754 | 1.003718 | CCTCCGTCCGGAAAAGCTT | 60.004 | 57.895 | 5.23 | 0.00 | 44.66 | 3.74 |
4553 | 4755 | 1.298859 | CCTCCGTCCGGAAAAGCTTG | 61.299 | 60.000 | 5.23 | 0.00 | 44.66 | 4.01 |
4554 | 4756 | 0.602905 | CTCCGTCCGGAAAAGCTTGT | 60.603 | 55.000 | 5.23 | 0.00 | 44.66 | 3.16 |
4555 | 4757 | 0.601841 | TCCGTCCGGAAAAGCTTGTC | 60.602 | 55.000 | 5.23 | 8.23 | 42.05 | 3.18 |
4556 | 4758 | 1.574702 | CCGTCCGGAAAAGCTTGTCC | 61.575 | 60.000 | 24.00 | 24.00 | 37.50 | 4.02 |
4557 | 4759 | 1.574702 | CGTCCGGAAAAGCTTGTCCC | 61.575 | 60.000 | 26.94 | 13.97 | 0.00 | 4.46 |
4558 | 4760 | 0.536460 | GTCCGGAAAAGCTTGTCCCA | 60.536 | 55.000 | 26.94 | 13.18 | 0.00 | 4.37 |
4559 | 4761 | 0.183971 | TCCGGAAAAGCTTGTCCCAA | 59.816 | 50.000 | 26.94 | 14.20 | 0.00 | 4.12 |
4560 | 4762 | 0.598065 | CCGGAAAAGCTTGTCCCAAG | 59.402 | 55.000 | 26.94 | 14.69 | 0.00 | 3.61 |
4561 | 4763 | 0.039165 | CGGAAAAGCTTGTCCCAAGC | 60.039 | 55.000 | 26.94 | 18.69 | 43.31 | 4.01 |
4567 | 4769 | 3.873805 | GCTTGTCCCAAGCTTGTTC | 57.126 | 52.632 | 24.35 | 14.17 | 40.01 | 3.18 |
4568 | 4770 | 0.315251 | GCTTGTCCCAAGCTTGTTCC | 59.685 | 55.000 | 24.35 | 11.81 | 40.01 | 3.62 |
4569 | 4771 | 1.986882 | CTTGTCCCAAGCTTGTTCCT | 58.013 | 50.000 | 24.35 | 0.00 | 0.00 | 3.36 |
4570 | 4772 | 1.882623 | CTTGTCCCAAGCTTGTTCCTC | 59.117 | 52.381 | 24.35 | 10.65 | 0.00 | 3.71 |
4571 | 4773 | 0.843309 | TGTCCCAAGCTTGTTCCTCA | 59.157 | 50.000 | 24.35 | 12.85 | 0.00 | 3.86 |
4572 | 4774 | 1.214175 | TGTCCCAAGCTTGTTCCTCAA | 59.786 | 47.619 | 24.35 | 1.41 | 34.61 | 3.02 |
4573 | 4775 | 2.306847 | GTCCCAAGCTTGTTCCTCAAA | 58.693 | 47.619 | 24.35 | 0.00 | 35.48 | 2.69 |
4574 | 4776 | 2.893489 | GTCCCAAGCTTGTTCCTCAAAT | 59.107 | 45.455 | 24.35 | 0.00 | 35.48 | 2.32 |
4575 | 4777 | 2.892852 | TCCCAAGCTTGTTCCTCAAATG | 59.107 | 45.455 | 24.35 | 5.47 | 35.48 | 2.32 |
4576 | 4778 | 2.028748 | CCCAAGCTTGTTCCTCAAATGG | 60.029 | 50.000 | 24.35 | 10.71 | 35.48 | 3.16 |
4577 | 4779 | 2.892852 | CCAAGCTTGTTCCTCAAATGGA | 59.107 | 45.455 | 24.35 | 0.00 | 36.92 | 3.41 |
4578 | 4780 | 3.512724 | CCAAGCTTGTTCCTCAAATGGAT | 59.487 | 43.478 | 24.35 | 0.00 | 36.92 | 3.41 |
4579 | 4781 | 4.491676 | CAAGCTTGTTCCTCAAATGGATG | 58.508 | 43.478 | 18.65 | 0.00 | 35.83 | 3.51 |
4580 | 4782 | 3.771216 | AGCTTGTTCCTCAAATGGATGT | 58.229 | 40.909 | 0.00 | 0.00 | 35.83 | 3.06 |
4581 | 4783 | 4.922206 | AGCTTGTTCCTCAAATGGATGTA | 58.078 | 39.130 | 0.00 | 0.00 | 35.83 | 2.29 |
4582 | 4784 | 5.513233 | AGCTTGTTCCTCAAATGGATGTAT | 58.487 | 37.500 | 0.00 | 0.00 | 35.83 | 2.29 |
4583 | 4785 | 5.591877 | AGCTTGTTCCTCAAATGGATGTATC | 59.408 | 40.000 | 0.00 | 0.00 | 35.83 | 2.24 |
4584 | 4786 | 5.591877 | GCTTGTTCCTCAAATGGATGTATCT | 59.408 | 40.000 | 0.00 | 0.00 | 35.83 | 1.98 |
4585 | 4787 | 6.767902 | GCTTGTTCCTCAAATGGATGTATCTA | 59.232 | 38.462 | 0.00 | 0.00 | 35.83 | 1.98 |
4586 | 4788 | 7.041508 | GCTTGTTCCTCAAATGGATGTATCTAG | 60.042 | 40.741 | 0.00 | 0.00 | 35.83 | 2.43 |
4587 | 4789 | 6.291377 | TGTTCCTCAAATGGATGTATCTAGC | 58.709 | 40.000 | 0.00 | 0.00 | 35.83 | 3.42 |
4588 | 4790 | 6.126796 | TGTTCCTCAAATGGATGTATCTAGCA | 60.127 | 38.462 | 0.00 | 0.00 | 35.83 | 3.49 |
4589 | 4791 | 5.858381 | TCCTCAAATGGATGTATCTAGCAC | 58.142 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
4590 | 4792 | 5.604231 | TCCTCAAATGGATGTATCTAGCACT | 59.396 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4591 | 4793 | 6.782494 | TCCTCAAATGGATGTATCTAGCACTA | 59.218 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
4592 | 4794 | 7.290014 | TCCTCAAATGGATGTATCTAGCACTAA | 59.710 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
4593 | 4795 | 7.386299 | CCTCAAATGGATGTATCTAGCACTAAC | 59.614 | 40.741 | 0.00 | 0.00 | 0.00 | 2.34 |
4594 | 4796 | 8.023021 | TCAAATGGATGTATCTAGCACTAACT | 57.977 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4595 | 4797 | 8.486210 | TCAAATGGATGTATCTAGCACTAACTT | 58.514 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
4596 | 4798 | 8.554528 | CAAATGGATGTATCTAGCACTAACTTG | 58.445 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
4597 | 4799 | 6.161855 | TGGATGTATCTAGCACTAACTTGG | 57.838 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
4598 | 4800 | 5.661312 | TGGATGTATCTAGCACTAACTTGGT | 59.339 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4599 | 4801 | 5.986135 | GGATGTATCTAGCACTAACTTGGTG | 59.014 | 44.000 | 0.97 | 0.97 | 37.70 | 4.17 |
4611 | 4813 | 5.986135 | CACTAACTTGGTGCTAGATACATCC | 59.014 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4612 | 4814 | 5.661312 | ACTAACTTGGTGCTAGATACATCCA | 59.339 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4613 | 4815 | 5.636903 | AACTTGGTGCTAGATACATCCAT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
4614 | 4816 | 5.636903 | ACTTGGTGCTAGATACATCCATT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
4615 | 4817 | 6.006275 | ACTTGGTGCTAGATACATCCATTT | 57.994 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
4616 | 4818 | 5.824624 | ACTTGGTGCTAGATACATCCATTTG | 59.175 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4617 | 4819 | 5.628797 | TGGTGCTAGATACATCCATTTGA | 57.371 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
4618 | 4820 | 5.614308 | TGGTGCTAGATACATCCATTTGAG | 58.386 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
4619 | 4821 | 4.999950 | GGTGCTAGATACATCCATTTGAGG | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
4620 | 4822 | 4.999950 | GTGCTAGATACATCCATTTGAGGG | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
4621 | 4823 | 4.907269 | TGCTAGATACATCCATTTGAGGGA | 59.093 | 41.667 | 0.00 | 0.00 | 39.14 | 4.20 |
4622 | 4824 | 5.012458 | TGCTAGATACATCCATTTGAGGGAG | 59.988 | 44.000 | 0.00 | 0.00 | 37.96 | 4.30 |
4623 | 4825 | 5.247110 | GCTAGATACATCCATTTGAGGGAGA | 59.753 | 44.000 | 0.00 | 0.00 | 37.96 | 3.71 |
4624 | 4826 | 6.239714 | GCTAGATACATCCATTTGAGGGAGAA | 60.240 | 42.308 | 0.00 | 0.00 | 37.96 | 2.87 |
4625 | 4827 | 6.185114 | AGATACATCCATTTGAGGGAGAAG | 57.815 | 41.667 | 0.00 | 0.00 | 37.96 | 2.85 |
4626 | 4828 | 5.669447 | AGATACATCCATTTGAGGGAGAAGT | 59.331 | 40.000 | 0.00 | 0.00 | 37.96 | 3.01 |
4627 | 4829 | 4.664688 | ACATCCATTTGAGGGAGAAGTT | 57.335 | 40.909 | 0.00 | 0.00 | 37.96 | 2.66 |
4628 | 4830 | 5.003096 | ACATCCATTTGAGGGAGAAGTTT | 57.997 | 39.130 | 0.00 | 0.00 | 37.96 | 2.66 |
4629 | 4831 | 5.397360 | ACATCCATTTGAGGGAGAAGTTTT | 58.603 | 37.500 | 0.00 | 0.00 | 37.96 | 2.43 |
4630 | 4832 | 5.840693 | ACATCCATTTGAGGGAGAAGTTTTT | 59.159 | 36.000 | 0.00 | 0.00 | 37.96 | 1.94 |
4645 | 4847 | 2.444281 | TTTTTCGGACGGAGGGAGT | 58.556 | 52.632 | 0.00 | 0.00 | 0.00 | 3.85 |
4646 | 4848 | 1.631405 | TTTTTCGGACGGAGGGAGTA | 58.369 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4660 | 4862 | 2.092323 | GGGAGTAGGAAACAACATGGC | 58.908 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
4682 | 4885 | 5.503662 | CACTAATTGCTAATGGATGTGCA | 57.496 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
4695 | 4898 | 4.009675 | TGGATGTGCATTCAGAAAGTACC | 58.990 | 43.478 | 4.44 | 0.00 | 0.00 | 3.34 |
4696 | 4899 | 4.009675 | GGATGTGCATTCAGAAAGTACCA | 58.990 | 43.478 | 4.44 | 0.00 | 0.00 | 3.25 |
4714 | 4917 | 0.587768 | CACAACTGACATCAAGCGCA | 59.412 | 50.000 | 11.47 | 0.00 | 0.00 | 6.09 |
4755 | 4958 | 5.914898 | AAAAGTCTGCCTGTGTTAAAGTT | 57.085 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
4859 | 5063 | 1.987807 | CTTCCCATGATCAGGCGGGT | 61.988 | 60.000 | 21.23 | 0.00 | 39.87 | 5.28 |
4922 | 5126 | 2.355010 | AAATCATGGCTGCTACCCTC | 57.645 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5006 | 5210 | 6.615316 | TGTTTACTCTCCATATGGATCAAGGA | 59.385 | 38.462 | 24.73 | 16.21 | 44.46 | 3.36 |
5111 | 5315 | 9.143155 | TCATATGTAAATCTCCAACAGCTACTA | 57.857 | 33.333 | 1.90 | 0.00 | 0.00 | 1.82 |
5141 | 5345 | 9.508642 | TGACAAGTTGTAATAATAATGTGGACA | 57.491 | 29.630 | 8.88 | 0.00 | 0.00 | 4.02 |
5321 | 5547 | 6.071784 | TCACAATTGCTTACAAGAGATTGCAT | 60.072 | 34.615 | 5.05 | 0.00 | 39.69 | 3.96 |
5324 | 5550 | 8.472413 | ACAATTGCTTACAAGAGATTGCATAAT | 58.528 | 29.630 | 5.05 | 0.00 | 39.69 | 1.28 |
5330 | 5556 | 8.589629 | GCTTACAAGAGATTGCATAATTTGTTG | 58.410 | 33.333 | 8.67 | 4.12 | 37.55 | 3.33 |
5380 | 5606 | 9.853177 | ATAAGAAGGTCCAAGATAAATGGTTAG | 57.147 | 33.333 | 0.00 | 0.00 | 39.09 | 2.34 |
5512 | 5738 | 3.973206 | TCCAAATGACTCTTCCGCTAA | 57.027 | 42.857 | 0.00 | 0.00 | 0.00 | 3.09 |
5554 | 5780 | 9.405587 | ACATTTAATCCACGAAATAACAAAGTG | 57.594 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
5577 | 5803 | 6.401394 | TGAATGAGTTCACATAGAAGGACAG | 58.599 | 40.000 | 0.00 | 0.00 | 39.36 | 3.51 |
5617 | 5843 | 2.310538 | GGGAATGATAGCTTTGGTGGG | 58.689 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
5623 | 5849 | 2.270874 | ATAGCTTTGGTGGGGCCTCG | 62.271 | 60.000 | 0.84 | 0.00 | 38.35 | 4.63 |
5679 | 5905 | 2.478831 | GAATTCCAGATGAGTCTCGGC | 58.521 | 52.381 | 0.00 | 0.00 | 30.42 | 5.54 |
5726 | 5952 | 3.986996 | TCTCATCCAGATGTCTGCAAA | 57.013 | 42.857 | 7.48 | 0.00 | 42.47 | 3.68 |
5730 | 5956 | 3.503363 | TCATCCAGATGTCTGCAAACAAC | 59.497 | 43.478 | 0.00 | 0.00 | 42.47 | 3.32 |
5742 | 5968 | 4.025229 | TCTGCAAACAACGACACAAGATAC | 60.025 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
5743 | 5969 | 3.623510 | TGCAAACAACGACACAAGATACA | 59.376 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
5748 | 5974 | 7.537306 | GCAAACAACGACACAAGATACATTATT | 59.463 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
5789 | 6015 | 2.069273 | CACGAGTGAATGTGGAGGTTC | 58.931 | 52.381 | 0.00 | 0.00 | 32.47 | 3.62 |
5815 | 6041 | 2.100989 | AGCAGGTGCCTACTACACTAC | 58.899 | 52.381 | 0.00 | 0.00 | 43.38 | 2.73 |
5832 | 6058 | 6.354794 | ACACTACAGCATTTGTCCTAGTTA | 57.645 | 37.500 | 0.00 | 0.00 | 41.29 | 2.24 |
5918 | 6148 | 5.990996 | CACCAGGCAACATAGAAACAAAATT | 59.009 | 36.000 | 0.00 | 0.00 | 41.41 | 1.82 |
5920 | 6150 | 5.409214 | CCAGGCAACATAGAAACAAAATTGG | 59.591 | 40.000 | 0.00 | 0.00 | 41.41 | 3.16 |
5922 | 6152 | 7.151308 | CAGGCAACATAGAAACAAAATTGGTA | 58.849 | 34.615 | 0.00 | 0.00 | 41.41 | 3.25 |
5949 | 6179 | 0.530744 | AAAGCTACACGATCCGAGCA | 59.469 | 50.000 | 0.00 | 0.00 | 37.40 | 4.26 |
5963 | 6193 | 0.239347 | CGAGCAAAGCAAACCAGGAG | 59.761 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
5964 | 6194 | 1.322442 | GAGCAAAGCAAACCAGGAGT | 58.678 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
6008 | 6238 | 5.529060 | TCACTTCTTCCTTTTCTGCTTCTTC | 59.471 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
6059 | 6289 | 1.558233 | AACGGAGATCCTCGACCTTT | 58.442 | 50.000 | 11.50 | 0.00 | 0.00 | 3.11 |
6064 | 6294 | 0.340208 | AGATCCTCGACCTTTCCCCT | 59.660 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
6074 | 6304 | 2.645297 | GACCTTTCCCCTCTTCCTCTTT | 59.355 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
6080 | 6310 | 6.467339 | CCTTTCCCCTCTTCCTCTTTTTCTTA | 60.467 | 42.308 | 0.00 | 0.00 | 0.00 | 2.10 |
6092 | 6322 | 2.570415 | TTTTCTTACCACCATCGGCA | 57.430 | 45.000 | 0.00 | 0.00 | 0.00 | 5.69 |
6093 | 6323 | 1.816074 | TTTCTTACCACCATCGGCAC | 58.184 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
6098 | 6328 | 4.758251 | CCACCATCGGCACTCGCA | 62.758 | 66.667 | 0.00 | 0.00 | 41.24 | 5.10 |
6099 | 6329 | 3.490759 | CACCATCGGCACTCGCAC | 61.491 | 66.667 | 0.00 | 0.00 | 41.24 | 5.34 |
6107 | 6337 | 2.505118 | GCACTCGCACTCTCGTCC | 60.505 | 66.667 | 0.00 | 0.00 | 38.36 | 4.79 |
6109 | 6339 | 3.432588 | ACTCGCACTCTCGTCCGG | 61.433 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
6127 | 6357 | 3.252284 | CCCTGGTGCACCCTCTGT | 61.252 | 66.667 | 32.62 | 0.00 | 34.29 | 3.41 |
6129 | 6359 | 1.488705 | CCCTGGTGCACCCTCTGTTA | 61.489 | 60.000 | 32.62 | 11.58 | 34.29 | 2.41 |
6159 | 6389 | 2.348998 | CGGCAGCCTCCAAGTTCT | 59.651 | 61.111 | 10.54 | 0.00 | 0.00 | 3.01 |
6167 | 6397 | 2.639839 | AGCCTCCAAGTTCTGCTTCTTA | 59.360 | 45.455 | 0.00 | 0.00 | 34.69 | 2.10 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
68 | 69 | 6.533819 | TGATGGCGAAACTAAATTATACCG | 57.466 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
70 | 71 | 8.094798 | TGGATGATGGCGAAACTAAATTATAC | 57.905 | 34.615 | 0.00 | 0.00 | 0.00 | 1.47 |
161 | 162 | 6.458210 | TGTACTTACTTGGCTGTTAAGTACC | 58.542 | 40.000 | 24.24 | 15.00 | 45.93 | 3.34 |
169 | 170 | 4.634012 | TGGAATGTACTTACTTGGCTGT | 57.366 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
180 | 181 | 5.189928 | TGTGTTGTGTCTTTGGAATGTACT | 58.810 | 37.500 | 0.00 | 0.00 | 0.00 | 2.73 |
226 | 227 | 5.220989 | CCATCACATCCTTGCTATGTTTGAG | 60.221 | 44.000 | 0.00 | 0.00 | 35.39 | 3.02 |
227 | 228 | 4.641541 | CCATCACATCCTTGCTATGTTTGA | 59.358 | 41.667 | 0.00 | 0.00 | 35.39 | 2.69 |
228 | 229 | 4.202080 | CCCATCACATCCTTGCTATGTTTG | 60.202 | 45.833 | 0.00 | 0.00 | 35.39 | 2.93 |
240 | 242 | 0.466922 | CAAGGCTCCCCATCACATCC | 60.467 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
242 | 244 | 1.616921 | CCAAGGCTCCCCATCACAT | 59.383 | 57.895 | 0.00 | 0.00 | 0.00 | 3.21 |
243 | 245 | 3.089838 | CCAAGGCTCCCCATCACA | 58.910 | 61.111 | 0.00 | 0.00 | 0.00 | 3.58 |
244 | 246 | 2.440980 | GCCAAGGCTCCCCATCAC | 60.441 | 66.667 | 3.29 | 0.00 | 38.26 | 3.06 |
246 | 248 | 2.440980 | GTGCCAAGGCTCCCCATC | 60.441 | 66.667 | 12.96 | 0.00 | 42.51 | 3.51 |
247 | 249 | 3.267233 | TGTGCCAAGGCTCCCCAT | 61.267 | 61.111 | 12.96 | 0.00 | 42.51 | 4.00 |
248 | 250 | 3.970410 | CTGTGCCAAGGCTCCCCA | 61.970 | 66.667 | 12.96 | 3.32 | 42.51 | 4.96 |
263 | 266 | 0.951558 | AGGCAACAGTTTTACCGCTG | 59.048 | 50.000 | 0.00 | 0.00 | 41.41 | 5.18 |
269 | 272 | 3.357203 | TGGTCACAAGGCAACAGTTTTA | 58.643 | 40.909 | 0.00 | 0.00 | 41.41 | 1.52 |
273 | 276 | 1.133823 | TCATGGTCACAAGGCAACAGT | 60.134 | 47.619 | 0.00 | 0.00 | 41.41 | 3.55 |
293 | 296 | 1.807814 | AGGACTTGAACCTGTGACCT | 58.192 | 50.000 | 0.00 | 0.00 | 36.30 | 3.85 |
294 | 297 | 2.367567 | TGTAGGACTTGAACCTGTGACC | 59.632 | 50.000 | 0.00 | 0.00 | 38.31 | 4.02 |
295 | 298 | 3.746045 | TGTAGGACTTGAACCTGTGAC | 57.254 | 47.619 | 0.00 | 0.00 | 38.31 | 3.67 |
296 | 299 | 3.181458 | GGTTGTAGGACTTGAACCTGTGA | 60.181 | 47.826 | 0.00 | 0.00 | 38.31 | 3.58 |
297 | 300 | 3.139077 | GGTTGTAGGACTTGAACCTGTG | 58.861 | 50.000 | 0.00 | 0.00 | 38.31 | 3.66 |
298 | 301 | 3.046374 | AGGTTGTAGGACTTGAACCTGT | 58.954 | 45.455 | 11.70 | 0.00 | 45.23 | 4.00 |
299 | 302 | 3.325135 | AGAGGTTGTAGGACTTGAACCTG | 59.675 | 47.826 | 15.48 | 0.00 | 46.59 | 4.00 |
306 | 309 | 2.972713 | TCTGCAAGAGGTTGTAGGACTT | 59.027 | 45.455 | 3.81 | 0.00 | 44.26 | 3.01 |
307 | 310 | 2.609747 | TCTGCAAGAGGTTGTAGGACT | 58.390 | 47.619 | 3.81 | 0.00 | 44.26 | 3.85 |
334 | 337 | 2.159254 | TCTTTTGTGTGCAGCCTTTCAC | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
335 | 338 | 2.098614 | TCTTTTGTGTGCAGCCTTTCA | 58.901 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
336 | 339 | 2.463876 | GTCTTTTGTGTGCAGCCTTTC | 58.536 | 47.619 | 0.00 | 0.00 | 0.00 | 2.62 |
337 | 340 | 1.136891 | GGTCTTTTGTGTGCAGCCTTT | 59.863 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
338 | 341 | 0.746659 | GGTCTTTTGTGTGCAGCCTT | 59.253 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
339 | 342 | 1.109323 | GGGTCTTTTGTGTGCAGCCT | 61.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
340 | 343 | 1.363807 | GGGTCTTTTGTGTGCAGCC | 59.636 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
341 | 344 | 0.459489 | TTGGGTCTTTTGTGTGCAGC | 59.541 | 50.000 | 0.00 | 0.00 | 0.00 | 5.25 |
342 | 345 | 2.166254 | ACTTTGGGTCTTTTGTGTGCAG | 59.834 | 45.455 | 0.00 | 0.00 | 0.00 | 4.41 |
343 | 346 | 2.094286 | CACTTTGGGTCTTTTGTGTGCA | 60.094 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
344 | 347 | 2.539476 | CACTTTGGGTCTTTTGTGTGC | 58.461 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
345 | 348 | 2.495669 | ACCACTTTGGGTCTTTTGTGTG | 59.504 | 45.455 | 0.00 | 0.00 | 43.37 | 3.82 |
346 | 349 | 2.815158 | ACCACTTTGGGTCTTTTGTGT | 58.185 | 42.857 | 0.00 | 0.00 | 43.37 | 3.72 |
355 | 358 | 1.227853 | GTCTGCGACCACTTTGGGT | 60.228 | 57.895 | 0.00 | 0.00 | 43.37 | 4.51 |
356 | 359 | 3.655481 | GTCTGCGACCACTTTGGG | 58.345 | 61.111 | 0.00 | 0.00 | 43.37 | 4.12 |
369 | 372 | 3.052082 | CCACTTGCGCAGGGTCTG | 61.052 | 66.667 | 24.27 | 12.69 | 34.12 | 3.51 |
370 | 373 | 4.335647 | CCCACTTGCGCAGGGTCT | 62.336 | 66.667 | 24.27 | 0.00 | 37.81 | 3.85 |
371 | 374 | 4.329545 | TCCCACTTGCGCAGGGTC | 62.330 | 66.667 | 27.15 | 0.00 | 43.31 | 4.46 |
372 | 375 | 4.335647 | CTCCCACTTGCGCAGGGT | 62.336 | 66.667 | 27.15 | 19.65 | 43.31 | 4.34 |
374 | 377 | 3.315142 | TAGCTCCCACTTGCGCAGG | 62.315 | 63.158 | 19.01 | 19.01 | 0.00 | 4.85 |
375 | 378 | 2.103042 | GTAGCTCCCACTTGCGCAG | 61.103 | 63.158 | 11.31 | 7.81 | 0.00 | 5.18 |
376 | 379 | 2.047274 | GTAGCTCCCACTTGCGCA | 60.047 | 61.111 | 5.66 | 5.66 | 0.00 | 6.09 |
377 | 380 | 3.188786 | CGTAGCTCCCACTTGCGC | 61.189 | 66.667 | 0.00 | 0.00 | 0.00 | 6.09 |
378 | 381 | 2.094659 | CACGTAGCTCCCACTTGCG | 61.095 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
379 | 382 | 2.391389 | GCACGTAGCTCCCACTTGC | 61.391 | 63.158 | 1.36 | 1.36 | 41.15 | 4.01 |
380 | 383 | 1.005037 | TGCACGTAGCTCCCACTTG | 60.005 | 57.895 | 10.54 | 0.00 | 45.94 | 3.16 |
381 | 384 | 1.004918 | GTGCACGTAGCTCCCACTT | 60.005 | 57.895 | 0.00 | 0.00 | 45.94 | 3.16 |
382 | 385 | 2.657237 | GTGCACGTAGCTCCCACT | 59.343 | 61.111 | 0.00 | 0.00 | 45.94 | 4.00 |
393 | 396 | 1.514678 | TAAAGGCAGCTTGGTGCACG | 61.515 | 55.000 | 23.23 | 0.00 | 45.93 | 5.34 |
402 | 405 | 3.955471 | TGCTATGTTTCTAAAGGCAGCT | 58.045 | 40.909 | 0.00 | 0.00 | 0.00 | 4.24 |
452 | 457 | 4.586001 | TGGTCTTAGGACTTAAACTCACGT | 59.414 | 41.667 | 4.85 | 0.00 | 41.82 | 4.49 |
455 | 460 | 6.464222 | CATGTGGTCTTAGGACTTAAACTCA | 58.536 | 40.000 | 4.85 | 0.00 | 41.82 | 3.41 |
457 | 462 | 5.246307 | GCATGTGGTCTTAGGACTTAAACT | 58.754 | 41.667 | 4.85 | 0.00 | 41.82 | 2.66 |
458 | 463 | 4.395231 | GGCATGTGGTCTTAGGACTTAAAC | 59.605 | 45.833 | 4.85 | 0.36 | 41.82 | 2.01 |
461 | 466 | 3.178046 | TGGCATGTGGTCTTAGGACTTA | 58.822 | 45.455 | 4.85 | 0.00 | 41.82 | 2.24 |
462 | 467 | 1.985159 | TGGCATGTGGTCTTAGGACTT | 59.015 | 47.619 | 4.85 | 0.00 | 41.82 | 3.01 |
463 | 468 | 1.556911 | CTGGCATGTGGTCTTAGGACT | 59.443 | 52.381 | 4.85 | 0.00 | 41.82 | 3.85 |
472 | 477 | 0.035881 | CTGACTCACTGGCATGTGGT | 59.964 | 55.000 | 14.28 | 11.56 | 38.40 | 4.16 |
481 | 486 | 4.861462 | GTGATATGTGTCACTGACTCACTG | 59.139 | 45.833 | 14.59 | 0.00 | 43.96 | 3.66 |
482 | 487 | 5.065704 | GTGATATGTGTCACTGACTCACT | 57.934 | 43.478 | 14.59 | 6.89 | 43.96 | 3.41 |
520 | 525 | 5.854431 | TTCAGCTTTTGGTTCAACAAAAC | 57.146 | 34.783 | 0.00 | 0.00 | 43.26 | 2.43 |
561 | 567 | 4.194640 | CACCCTTGAGAACGAATGATCAT | 58.805 | 43.478 | 1.18 | 1.18 | 0.00 | 2.45 |
563 | 569 | 2.939103 | CCACCCTTGAGAACGAATGATC | 59.061 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
566 | 572 | 2.076863 | GTCCACCCTTGAGAACGAATG | 58.923 | 52.381 | 0.00 | 0.00 | 0.00 | 2.67 |
652 | 658 | 8.938801 | TCCATATGCATATTTCACTTACCATT | 57.061 | 30.769 | 16.71 | 0.00 | 0.00 | 3.16 |
761 | 770 | 7.912250 | CGCTTATGCTTTGATTAGATTTCAAGT | 59.088 | 33.333 | 0.00 | 0.00 | 34.76 | 3.16 |
801 | 810 | 5.007234 | CAGTCACGTGGTCAAACTATTCAAA | 59.993 | 40.000 | 17.00 | 0.00 | 0.00 | 2.69 |
819 | 828 | 3.887621 | TGATAGTAAGTGGGCAGTCAC | 57.112 | 47.619 | 0.00 | 0.00 | 37.89 | 3.67 |
846 | 855 | 0.383949 | TTCTTGGCGTTTTGGAGTGC | 59.616 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
849 | 858 | 6.677781 | TTCTATATTCTTGGCGTTTTGGAG | 57.322 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
992 | 1001 | 0.456824 | CTGCTGCTGCTTGCTGAATG | 60.457 | 55.000 | 17.00 | 2.49 | 42.27 | 2.67 |
1041 | 1056 | 1.228521 | CCCCATGGACACAGCAACA | 60.229 | 57.895 | 15.22 | 0.00 | 0.00 | 3.33 |
1049 | 1064 | 1.770658 | CTAAGCAGATCCCCATGGACA | 59.229 | 52.381 | 15.22 | 0.00 | 45.58 | 4.02 |
1177 | 1192 | 4.431131 | CCCAATGAGCGGTGGCCT | 62.431 | 66.667 | 3.32 | 0.00 | 41.24 | 5.19 |
1191 | 1206 | 0.531974 | GTTGACGAAGCACAGTCCCA | 60.532 | 55.000 | 0.00 | 0.00 | 36.61 | 4.37 |
1236 | 1251 | 2.698803 | AGCGCATATGACACTTGTTCA | 58.301 | 42.857 | 11.47 | 0.00 | 0.00 | 3.18 |
1375 | 1390 | 2.100584 | AGGAACAGAGACGATCAGCATC | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1539 | 1610 | 8.665685 | TGAAGAAACTACTCAAAGTTTGACTTC | 58.334 | 33.333 | 23.12 | 23.12 | 46.92 | 3.01 |
1662 | 1762 | 6.915544 | ATTGCACTATGAGTAGATTGTGTG | 57.084 | 37.500 | 0.00 | 0.00 | 33.29 | 3.82 |
1663 | 1763 | 7.492669 | GTGTATTGCACTATGAGTAGATTGTGT | 59.507 | 37.037 | 0.00 | 0.00 | 44.41 | 3.72 |
1664 | 1764 | 7.845483 | GTGTATTGCACTATGAGTAGATTGTG | 58.155 | 38.462 | 0.00 | 0.00 | 44.41 | 3.33 |
1680 | 1780 | 3.070476 | TGGAGATTGCTGTGTATTGCA | 57.930 | 42.857 | 0.00 | 0.00 | 37.42 | 4.08 |
1681 | 1781 | 4.096833 | TGAATGGAGATTGCTGTGTATTGC | 59.903 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
1682 | 1782 | 5.587443 | TCTGAATGGAGATTGCTGTGTATTG | 59.413 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1683 | 1783 | 5.748402 | TCTGAATGGAGATTGCTGTGTATT | 58.252 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
1684 | 1784 | 5.363562 | TCTGAATGGAGATTGCTGTGTAT | 57.636 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
1685 | 1785 | 4.824479 | TCTGAATGGAGATTGCTGTGTA | 57.176 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
1686 | 1786 | 3.708403 | TCTGAATGGAGATTGCTGTGT | 57.292 | 42.857 | 0.00 | 0.00 | 0.00 | 3.72 |
1687 | 1787 | 5.238868 | CCTATTCTGAATGGAGATTGCTGTG | 59.761 | 44.000 | 14.47 | 0.00 | 0.00 | 3.66 |
1688 | 1788 | 5.131642 | TCCTATTCTGAATGGAGATTGCTGT | 59.868 | 40.000 | 14.47 | 0.00 | 0.00 | 4.40 |
1689 | 1789 | 5.618236 | TCCTATTCTGAATGGAGATTGCTG | 58.382 | 41.667 | 14.47 | 0.00 | 0.00 | 4.41 |
1774 | 1874 | 2.723273 | GCAACCCAACTAGCCTGTATT | 58.277 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
1795 | 1895 | 5.715434 | TTTCTTGTAGGGGTAAAACATGC | 57.285 | 39.130 | 0.00 | 0.00 | 0.00 | 4.06 |
1864 | 1964 | 6.892658 | TGTGCTCATAGGCTCTTTTAAAAA | 57.107 | 33.333 | 1.66 | 0.00 | 0.00 | 1.94 |
1865 | 1965 | 6.892658 | TTGTGCTCATAGGCTCTTTTAAAA | 57.107 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
1866 | 1966 | 7.466746 | AATTGTGCTCATAGGCTCTTTTAAA | 57.533 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1867 | 1967 | 7.466746 | AAATTGTGCTCATAGGCTCTTTTAA | 57.533 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1868 | 1968 | 7.466746 | AAAATTGTGCTCATAGGCTCTTTTA | 57.533 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2309 | 2434 | 2.360600 | TACATGCACCGGGTTGCC | 60.361 | 61.111 | 13.95 | 1.69 | 42.25 | 4.52 |
2310 | 2435 | 3.051392 | GCTACATGCACCGGGTTGC | 62.051 | 63.158 | 6.32 | 8.50 | 43.31 | 4.17 |
2311 | 2436 | 1.369091 | GAGCTACATGCACCGGGTTG | 61.369 | 60.000 | 6.32 | 0.00 | 45.94 | 3.77 |
2312 | 2437 | 1.078426 | GAGCTACATGCACCGGGTT | 60.078 | 57.895 | 6.32 | 0.00 | 45.94 | 4.11 |
2314 | 2439 | 2.203070 | GGAGCTACATGCACCGGG | 60.203 | 66.667 | 6.32 | 0.00 | 42.21 | 5.73 |
2341 | 2466 | 4.735599 | GACCCTTCCCCGGACCCT | 62.736 | 72.222 | 0.73 | 0.00 | 0.00 | 4.34 |
2348 | 2473 | 1.859841 | AAATGGTCGGACCCTTCCCC | 61.860 | 60.000 | 23.81 | 0.00 | 38.99 | 4.81 |
2349 | 2474 | 0.039180 | AAAATGGTCGGACCCTTCCC | 59.961 | 55.000 | 23.81 | 0.00 | 38.99 | 3.97 |
2350 | 2475 | 1.173913 | CAAAATGGTCGGACCCTTCC | 58.826 | 55.000 | 23.81 | 0.00 | 37.50 | 3.46 |
2351 | 2476 | 1.173913 | CCAAAATGGTCGGACCCTTC | 58.826 | 55.000 | 23.81 | 0.00 | 37.50 | 3.46 |
2352 | 2477 | 0.251608 | CCCAAAATGGTCGGACCCTT | 60.252 | 55.000 | 23.81 | 17.44 | 37.50 | 3.95 |
2353 | 2478 | 1.382629 | CCCAAAATGGTCGGACCCT | 59.617 | 57.895 | 23.81 | 12.03 | 37.50 | 4.34 |
2354 | 2479 | 0.963856 | GACCCAAAATGGTCGGACCC | 60.964 | 60.000 | 23.81 | 7.15 | 44.98 | 4.46 |
2355 | 2480 | 2.563297 | GACCCAAAATGGTCGGACC | 58.437 | 57.895 | 20.36 | 20.36 | 44.98 | 4.46 |
2361 | 2486 | 3.754850 | GCGTACTAAAGACCCAAAATGGT | 59.245 | 43.478 | 0.00 | 0.00 | 42.79 | 3.55 |
2362 | 2487 | 3.754323 | TGCGTACTAAAGACCCAAAATGG | 59.246 | 43.478 | 0.00 | 0.00 | 37.25 | 3.16 |
2363 | 2488 | 4.693566 | TCTGCGTACTAAAGACCCAAAATG | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
2364 | 2489 | 4.901868 | TCTGCGTACTAAAGACCCAAAAT | 58.098 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
2365 | 2490 | 4.312443 | CTCTGCGTACTAAAGACCCAAAA | 58.688 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
2366 | 2491 | 3.863400 | GCTCTGCGTACTAAAGACCCAAA | 60.863 | 47.826 | 0.00 | 0.00 | 0.00 | 3.28 |
2367 | 2492 | 2.353406 | GCTCTGCGTACTAAAGACCCAA | 60.353 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2368 | 2493 | 1.203994 | GCTCTGCGTACTAAAGACCCA | 59.796 | 52.381 | 0.00 | 0.00 | 0.00 | 4.51 |
2369 | 2494 | 1.203994 | TGCTCTGCGTACTAAAGACCC | 59.796 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
2370 | 2495 | 2.649331 | TGCTCTGCGTACTAAAGACC | 57.351 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2371 | 2496 | 2.924290 | CCTTGCTCTGCGTACTAAAGAC | 59.076 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2372 | 2497 | 2.674177 | GCCTTGCTCTGCGTACTAAAGA | 60.674 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2373 | 2498 | 1.661112 | GCCTTGCTCTGCGTACTAAAG | 59.339 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
2374 | 2499 | 1.275291 | AGCCTTGCTCTGCGTACTAAA | 59.725 | 47.619 | 0.00 | 0.00 | 30.62 | 1.85 |
2375 | 2500 | 0.895530 | AGCCTTGCTCTGCGTACTAA | 59.104 | 50.000 | 0.00 | 0.00 | 30.62 | 2.24 |
2376 | 2501 | 0.895530 | AAGCCTTGCTCTGCGTACTA | 59.104 | 50.000 | 0.00 | 0.00 | 38.25 | 1.82 |
2377 | 2502 | 0.035458 | AAAGCCTTGCTCTGCGTACT | 59.965 | 50.000 | 0.00 | 0.00 | 38.25 | 2.73 |
2378 | 2503 | 0.444260 | GAAAGCCTTGCTCTGCGTAC | 59.556 | 55.000 | 0.00 | 0.00 | 38.25 | 3.67 |
2379 | 2504 | 0.034756 | TGAAAGCCTTGCTCTGCGTA | 59.965 | 50.000 | 0.00 | 0.00 | 38.25 | 4.42 |
2380 | 2505 | 1.227943 | TGAAAGCCTTGCTCTGCGT | 60.228 | 52.632 | 0.00 | 0.00 | 38.25 | 5.24 |
2381 | 2506 | 1.208614 | GTGAAAGCCTTGCTCTGCG | 59.791 | 57.895 | 0.00 | 0.00 | 38.25 | 5.18 |
2382 | 2507 | 1.813513 | TAGTGAAAGCCTTGCTCTGC | 58.186 | 50.000 | 0.00 | 0.00 | 38.25 | 4.26 |
2383 | 2508 | 4.836125 | TTTTAGTGAAAGCCTTGCTCTG | 57.164 | 40.909 | 0.00 | 0.00 | 38.25 | 3.35 |
2384 | 2509 | 4.889995 | AGTTTTTAGTGAAAGCCTTGCTCT | 59.110 | 37.500 | 0.00 | 0.00 | 38.25 | 4.09 |
2503 | 2640 | 8.341892 | AGAAATAGGAAGAATGAAAGAACCAC | 57.658 | 34.615 | 0.00 | 0.00 | 0.00 | 4.16 |
2913 | 3069 | 7.526142 | AAGTTATCTGTGTACTTGAGACTCA | 57.474 | 36.000 | 0.00 | 0.00 | 31.31 | 3.41 |
2955 | 3111 | 7.121168 | CGGTACCAATATCTATTTCAATGCCAT | 59.879 | 37.037 | 13.54 | 0.00 | 0.00 | 4.40 |
3170 | 3326 | 5.423015 | TCAGCTGACCATATTCTGAACTTC | 58.577 | 41.667 | 13.74 | 0.00 | 31.62 | 3.01 |
3267 | 3423 | 6.954487 | TCTGCATGCATCATAAAAGAGAAT | 57.046 | 33.333 | 22.97 | 0.00 | 0.00 | 2.40 |
3439 | 3595 | 0.991146 | TGGGGTTCTTGCAGAGCATA | 59.009 | 50.000 | 0.00 | 0.00 | 38.76 | 3.14 |
3747 | 3934 | 5.918608 | ACAATACAGGGTATGCTTCTACAG | 58.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3816 | 4007 | 3.749088 | TGGGAAAGTGCATAAACTACGTG | 59.251 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
4041 | 4237 | 6.648725 | GCCATTCTGGAGACTATATTTCTGTC | 59.351 | 42.308 | 0.00 | 0.00 | 40.96 | 3.51 |
4184 | 4383 | 4.474303 | TTTCATTCTCCCCATGGCATAT | 57.526 | 40.909 | 6.09 | 0.00 | 0.00 | 1.78 |
4386 | 4585 | 3.371487 | CCTGTGCCTGACATAACCCAATA | 60.371 | 47.826 | 0.00 | 0.00 | 32.74 | 1.90 |
4514 | 4715 | 8.931568 | ACGGAGGGAGTACTTTATTTGTAATAT | 58.068 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
4531 | 4733 | 1.218316 | CTTTTCCGGACGGAGGGAG | 59.782 | 63.158 | 13.64 | 9.15 | 46.06 | 4.30 |
4532 | 4734 | 2.951101 | GCTTTTCCGGACGGAGGGA | 61.951 | 63.158 | 13.64 | 1.83 | 46.06 | 4.20 |
4533 | 4735 | 2.436115 | GCTTTTCCGGACGGAGGG | 60.436 | 66.667 | 13.64 | 8.97 | 46.06 | 4.30 |
4534 | 4736 | 1.003718 | AAGCTTTTCCGGACGGAGG | 60.004 | 57.895 | 13.64 | 9.30 | 46.06 | 4.30 |
4535 | 4737 | 0.602905 | ACAAGCTTTTCCGGACGGAG | 60.603 | 55.000 | 13.64 | 3.27 | 46.06 | 4.63 |
4536 | 4738 | 0.601841 | GACAAGCTTTTCCGGACGGA | 60.602 | 55.000 | 1.83 | 9.76 | 43.52 | 4.69 |
4537 | 4739 | 1.574702 | GGACAAGCTTTTCCGGACGG | 61.575 | 60.000 | 15.65 | 3.96 | 0.00 | 4.79 |
4538 | 4740 | 1.574702 | GGGACAAGCTTTTCCGGACG | 61.575 | 60.000 | 22.30 | 0.00 | 32.00 | 4.79 |
4539 | 4741 | 0.536460 | TGGGACAAGCTTTTCCGGAC | 60.536 | 55.000 | 22.30 | 11.43 | 31.92 | 4.79 |
4540 | 4742 | 1.840598 | TGGGACAAGCTTTTCCGGA | 59.159 | 52.632 | 22.30 | 10.91 | 31.92 | 5.14 |
4541 | 4743 | 4.492604 | TGGGACAAGCTTTTCCGG | 57.507 | 55.556 | 22.30 | 0.00 | 31.92 | 5.14 |
4550 | 4752 | 4.249028 | TTGAGGAACAAGCTTGGGACAAG | 61.249 | 47.826 | 29.18 | 3.71 | 37.48 | 3.16 |
4551 | 4753 | 2.357673 | TTGAGGAACAAGCTTGGGACAA | 60.358 | 45.455 | 29.18 | 21.59 | 37.48 | 3.18 |
4552 | 4754 | 0.843309 | TGAGGAACAAGCTTGGGACA | 59.157 | 50.000 | 29.18 | 17.71 | 0.00 | 4.02 |
4553 | 4755 | 1.981256 | TTGAGGAACAAGCTTGGGAC | 58.019 | 50.000 | 29.18 | 17.88 | 34.20 | 4.46 |
4554 | 4756 | 2.746279 | TTTGAGGAACAAGCTTGGGA | 57.254 | 45.000 | 29.18 | 4.51 | 39.77 | 4.37 |
4555 | 4757 | 2.028748 | CCATTTGAGGAACAAGCTTGGG | 60.029 | 50.000 | 29.18 | 13.19 | 39.77 | 4.12 |
4556 | 4758 | 2.892852 | TCCATTTGAGGAACAAGCTTGG | 59.107 | 45.455 | 29.18 | 12.28 | 39.77 | 3.61 |
4557 | 4759 | 4.021719 | ACATCCATTTGAGGAACAAGCTTG | 60.022 | 41.667 | 24.84 | 24.84 | 41.92 | 4.01 |
4558 | 4760 | 4.154942 | ACATCCATTTGAGGAACAAGCTT | 58.845 | 39.130 | 0.00 | 0.00 | 41.92 | 3.74 |
4559 | 4761 | 3.771216 | ACATCCATTTGAGGAACAAGCT | 58.229 | 40.909 | 0.00 | 0.00 | 41.92 | 3.74 |
4560 | 4762 | 5.591877 | AGATACATCCATTTGAGGAACAAGC | 59.408 | 40.000 | 0.00 | 0.00 | 41.92 | 4.01 |
4561 | 4763 | 7.041508 | GCTAGATACATCCATTTGAGGAACAAG | 60.042 | 40.741 | 0.00 | 0.00 | 41.92 | 3.16 |
4562 | 4764 | 6.767902 | GCTAGATACATCCATTTGAGGAACAA | 59.232 | 38.462 | 0.00 | 0.00 | 41.92 | 2.83 |
4563 | 4765 | 6.126796 | TGCTAGATACATCCATTTGAGGAACA | 60.127 | 38.462 | 0.00 | 0.00 | 41.92 | 3.18 |
4564 | 4766 | 6.203723 | GTGCTAGATACATCCATTTGAGGAAC | 59.796 | 42.308 | 0.00 | 0.00 | 41.92 | 3.62 |
4565 | 4767 | 6.100279 | AGTGCTAGATACATCCATTTGAGGAA | 59.900 | 38.462 | 0.00 | 0.00 | 41.92 | 3.36 |
4566 | 4768 | 5.604231 | AGTGCTAGATACATCCATTTGAGGA | 59.396 | 40.000 | 0.00 | 0.00 | 43.01 | 3.71 |
4567 | 4769 | 5.862845 | AGTGCTAGATACATCCATTTGAGG | 58.137 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
4568 | 4770 | 8.147058 | AGTTAGTGCTAGATACATCCATTTGAG | 58.853 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
4569 | 4771 | 8.023021 | AGTTAGTGCTAGATACATCCATTTGA | 57.977 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
4570 | 4772 | 8.554528 | CAAGTTAGTGCTAGATACATCCATTTG | 58.445 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
4571 | 4773 | 7.716998 | CCAAGTTAGTGCTAGATACATCCATTT | 59.283 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
4572 | 4774 | 7.147479 | ACCAAGTTAGTGCTAGATACATCCATT | 60.147 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
4573 | 4775 | 6.327626 | ACCAAGTTAGTGCTAGATACATCCAT | 59.672 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
4574 | 4776 | 5.661312 | ACCAAGTTAGTGCTAGATACATCCA | 59.339 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4575 | 4777 | 5.986135 | CACCAAGTTAGTGCTAGATACATCC | 59.014 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4587 | 4789 | 5.986135 | GGATGTATCTAGCACCAAGTTAGTG | 59.014 | 44.000 | 0.00 | 0.00 | 38.30 | 2.74 |
4588 | 4790 | 5.661312 | TGGATGTATCTAGCACCAAGTTAGT | 59.339 | 40.000 | 0.00 | 0.00 | 33.25 | 2.24 |
4589 | 4791 | 6.161855 | TGGATGTATCTAGCACCAAGTTAG | 57.838 | 41.667 | 0.00 | 0.00 | 32.79 | 2.34 |
4590 | 4792 | 6.747414 | ATGGATGTATCTAGCACCAAGTTA | 57.253 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
4591 | 4793 | 5.636903 | ATGGATGTATCTAGCACCAAGTT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
4592 | 4794 | 5.636903 | AATGGATGTATCTAGCACCAAGT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
4593 | 4795 | 6.057533 | TCAAATGGATGTATCTAGCACCAAG | 58.942 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4594 | 4796 | 6.000246 | TCAAATGGATGTATCTAGCACCAA | 58.000 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
4595 | 4797 | 5.455183 | CCTCAAATGGATGTATCTAGCACCA | 60.455 | 44.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4596 | 4798 | 4.999950 | CCTCAAATGGATGTATCTAGCACC | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 5.01 |
4597 | 4799 | 4.999950 | CCCTCAAATGGATGTATCTAGCAC | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
4598 | 4800 | 4.907269 | TCCCTCAAATGGATGTATCTAGCA | 59.093 | 41.667 | 0.00 | 0.00 | 0.00 | 3.49 |
4599 | 4801 | 5.247110 | TCTCCCTCAAATGGATGTATCTAGC | 59.753 | 44.000 | 0.00 | 0.00 | 0.00 | 3.42 |
4600 | 4802 | 6.924913 | TCTCCCTCAAATGGATGTATCTAG | 57.075 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
4601 | 4803 | 6.846505 | ACTTCTCCCTCAAATGGATGTATCTA | 59.153 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
4602 | 4804 | 5.669447 | ACTTCTCCCTCAAATGGATGTATCT | 59.331 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
4603 | 4805 | 5.934781 | ACTTCTCCCTCAAATGGATGTATC | 58.065 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
4604 | 4806 | 5.983333 | ACTTCTCCCTCAAATGGATGTAT | 57.017 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
4605 | 4807 | 5.779241 | AACTTCTCCCTCAAATGGATGTA | 57.221 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
4606 | 4808 | 4.664688 | AACTTCTCCCTCAAATGGATGT | 57.335 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
4607 | 4809 | 5.990120 | AAAACTTCTCCCTCAAATGGATG | 57.010 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
4627 | 4829 | 1.547372 | CTACTCCCTCCGTCCGAAAAA | 59.453 | 52.381 | 0.00 | 0.00 | 0.00 | 1.94 |
4628 | 4830 | 1.180029 | CTACTCCCTCCGTCCGAAAA | 58.820 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4629 | 4831 | 0.682209 | CCTACTCCCTCCGTCCGAAA | 60.682 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4630 | 4832 | 1.077212 | CCTACTCCCTCCGTCCGAA | 60.077 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
4631 | 4833 | 1.565390 | TTCCTACTCCCTCCGTCCGA | 61.565 | 60.000 | 0.00 | 0.00 | 0.00 | 4.55 |
4632 | 4834 | 0.682209 | TTTCCTACTCCCTCCGTCCG | 60.682 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4633 | 4835 | 0.822811 | GTTTCCTACTCCCTCCGTCC | 59.177 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4634 | 4836 | 1.553706 | TGTTTCCTACTCCCTCCGTC | 58.446 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4635 | 4837 | 1.622312 | GTTGTTTCCTACTCCCTCCGT | 59.378 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
4636 | 4838 | 1.621814 | TGTTGTTTCCTACTCCCTCCG | 59.378 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
4637 | 4839 | 3.610911 | CATGTTGTTTCCTACTCCCTCC | 58.389 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4638 | 4840 | 3.610911 | CCATGTTGTTTCCTACTCCCTC | 58.389 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4639 | 4841 | 2.290960 | GCCATGTTGTTTCCTACTCCCT | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4640 | 4842 | 2.092323 | GCCATGTTGTTTCCTACTCCC | 58.908 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
4641 | 4843 | 2.488153 | GTGCCATGTTGTTTCCTACTCC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4642 | 4844 | 3.412386 | AGTGCCATGTTGTTTCCTACTC | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
4643 | 4845 | 3.508845 | AGTGCCATGTTGTTTCCTACT | 57.491 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
4644 | 4846 | 5.897377 | ATTAGTGCCATGTTGTTTCCTAC | 57.103 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
4645 | 4847 | 6.266168 | CAATTAGTGCCATGTTGTTTCCTA | 57.734 | 37.500 | 0.00 | 0.00 | 0.00 | 2.94 |
4646 | 4848 | 5.138125 | CAATTAGTGCCATGTTGTTTCCT | 57.862 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
4660 | 4862 | 5.503662 | TGCACATCCATTAGCAATTAGTG | 57.496 | 39.130 | 0.00 | 0.00 | 33.48 | 2.74 |
4682 | 4885 | 5.680619 | TGTCAGTTGTGGTACTTTCTGAAT | 58.319 | 37.500 | 0.00 | 0.00 | 34.49 | 2.57 |
4695 | 4898 | 0.587768 | TGCGCTTGATGTCAGTTGTG | 59.412 | 50.000 | 9.73 | 0.00 | 0.00 | 3.33 |
4696 | 4899 | 1.527034 | ATGCGCTTGATGTCAGTTGT | 58.473 | 45.000 | 9.73 | 0.00 | 0.00 | 3.32 |
4736 | 4939 | 5.291905 | ACTAACTTTAACACAGGCAGACT | 57.708 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
4752 | 4955 | 8.182227 | GCTTGTGTTTTTACTTGAGAACTAACT | 58.818 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4753 | 4956 | 7.966204 | TGCTTGTGTTTTTACTTGAGAACTAAC | 59.034 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
4755 | 4958 | 7.618502 | TGCTTGTGTTTTTACTTGAGAACTA | 57.381 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4797 | 5001 | 7.448161 | TGAAAATTGCCATCTGAACTCTAAAGA | 59.552 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
4839 | 5043 | 1.528824 | CCGCCTGATCATGGGAAGT | 59.471 | 57.895 | 15.21 | 0.00 | 0.00 | 3.01 |
4859 | 5063 | 1.796017 | TCCCCAAGCATATACGTGGA | 58.204 | 50.000 | 9.30 | 0.00 | 41.18 | 4.02 |
4922 | 5126 | 7.040478 | TCCAGTTTGAACCTGAAGAAATGTATG | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 2.39 |
5006 | 5210 | 4.149598 | GGGGGTACACAAAAAGATGAAGT | 58.850 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
5324 | 5550 | 9.890629 | AGATCAGAGTTGCTTATATACAACAAA | 57.109 | 29.630 | 16.41 | 4.11 | 46.79 | 2.83 |
5380 | 5606 | 6.478344 | CCACTCTAGCTGAATAAACATCTGTC | 59.522 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
5516 | 5742 | 7.120579 | TCGTGGATTAAATGTGTTATTCTTGCT | 59.879 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
5517 | 5743 | 7.247728 | TCGTGGATTAAATGTGTTATTCTTGC | 58.752 | 34.615 | 0.00 | 0.00 | 0.00 | 4.01 |
5554 | 5780 | 5.814705 | CCTGTCCTTCTATGTGAACTCATTC | 59.185 | 44.000 | 0.00 | 0.00 | 35.18 | 2.67 |
5577 | 5803 | 0.988063 | AAAGGTGCCCTCTCTTCTCC | 59.012 | 55.000 | 0.00 | 0.00 | 30.89 | 3.71 |
5617 | 5843 | 2.325583 | TTGGTGATATTGTCGAGGCC | 57.674 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
5623 | 5849 | 7.830739 | AGAAGGTCAAATTTGGTGATATTGTC | 58.169 | 34.615 | 17.90 | 4.41 | 0.00 | 3.18 |
5726 | 5952 | 9.042008 | GGATAATAATGTATCTTGTGTCGTTGT | 57.958 | 33.333 | 0.00 | 0.00 | 32.09 | 3.32 |
5748 | 5974 | 7.354025 | CGTGGCAACGTATAATAAATGGATA | 57.646 | 36.000 | 5.16 | 0.00 | 44.93 | 2.59 |
5769 | 5995 | 2.069273 | GAACCTCCACATTCACTCGTG | 58.931 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
5789 | 6015 | 1.490574 | AGTAGGCACCTGCTTAGGAG | 58.509 | 55.000 | 0.88 | 0.00 | 41.70 | 3.69 |
5792 | 6018 | 2.761208 | AGTGTAGTAGGCACCTGCTTAG | 59.239 | 50.000 | 12.75 | 0.00 | 39.61 | 2.18 |
5852 | 6078 | 6.047870 | AGTATCTTGCTTCAAGTGATGCTAG | 58.952 | 40.000 | 18.17 | 18.17 | 43.69 | 3.42 |
5918 | 6148 | 3.435327 | CGTGTAGCTTTTTGCATCTACCA | 59.565 | 43.478 | 0.00 | 0.00 | 45.94 | 3.25 |
5920 | 6150 | 4.921470 | TCGTGTAGCTTTTTGCATCTAC | 57.079 | 40.909 | 0.00 | 0.00 | 45.94 | 2.59 |
5922 | 6152 | 3.375299 | GGATCGTGTAGCTTTTTGCATCT | 59.625 | 43.478 | 0.00 | 0.00 | 45.94 | 2.90 |
5949 | 6179 | 1.115326 | GGCCACTCCTGGTTTGCTTT | 61.115 | 55.000 | 0.00 | 0.00 | 40.17 | 3.51 |
5963 | 6193 | 2.890945 | AGTTGTCTAACCATTTGGCCAC | 59.109 | 45.455 | 3.88 | 0.00 | 37.52 | 5.01 |
5964 | 6194 | 3.153919 | GAGTTGTCTAACCATTTGGCCA | 58.846 | 45.455 | 0.00 | 0.00 | 37.52 | 5.36 |
5966 | 6196 | 3.821033 | AGTGAGTTGTCTAACCATTTGGC | 59.179 | 43.478 | 0.00 | 0.00 | 37.52 | 4.52 |
5967 | 6197 | 5.765182 | AGAAGTGAGTTGTCTAACCATTTGG | 59.235 | 40.000 | 0.00 | 0.00 | 37.52 | 3.28 |
6059 | 6289 | 4.288887 | GGTAAGAAAAAGAGGAAGAGGGGA | 59.711 | 45.833 | 0.00 | 0.00 | 0.00 | 4.81 |
6064 | 6294 | 5.640158 | TGGTGGTAAGAAAAAGAGGAAGA | 57.360 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
6074 | 6304 | 1.349688 | AGTGCCGATGGTGGTAAGAAA | 59.650 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
6080 | 6310 | 4.760047 | GCGAGTGCCGATGGTGGT | 62.760 | 66.667 | 0.00 | 0.00 | 41.76 | 4.16 |
6109 | 6339 | 4.729918 | CAGAGGGTGCACCAGGGC | 62.730 | 72.222 | 35.78 | 19.27 | 43.89 | 5.19 |
6111 | 6341 | 0.321653 | GTAACAGAGGGTGCACCAGG | 60.322 | 60.000 | 35.78 | 22.87 | 43.89 | 4.45 |
6113 | 6343 | 0.766674 | AGGTAACAGAGGGTGCACCA | 60.767 | 55.000 | 35.78 | 12.18 | 40.53 | 4.17 |
6127 | 6357 | 2.124901 | CCGCGGATGCCAAGGTAA | 60.125 | 61.111 | 24.07 | 0.00 | 38.08 | 2.85 |
6156 | 6386 | 4.881273 | TGTGCAGAAAACTAAGAAGCAGAA | 59.119 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
6159 | 6389 | 5.762045 | GATTGTGCAGAAAACTAAGAAGCA | 58.238 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |

Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.