Multiple sequence alignment - TraesCS7D01G059000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G059000 chr7D 100.000 6183 0 0 1 6183 31954321 31948139 0.000000e+00 11418.0
1 TraesCS7D01G059000 chr7D 85.522 297 37 4 1904 2195 31960774 31960479 7.790000e-79 305.0
2 TraesCS7D01G059000 chr7D 90.708 226 19 2 4098 4323 31959357 31959134 3.620000e-77 300.0
3 TraesCS7D01G059000 chr7D 83.849 291 43 3 1909 2195 32004475 32004185 2.200000e-69 274.0
4 TraesCS7D01G059000 chr7D 81.921 177 22 6 247 418 571880227 571880398 2.320000e-29 141.0
5 TraesCS7D01G059000 chr4A 93.299 1940 78 12 369 2302 696000341 696002234 0.000000e+00 2815.0
6 TraesCS7D01G059000 chr4A 97.271 1319 35 1 2386 3704 696002248 696003565 0.000000e+00 2235.0
7 TraesCS7D01G059000 chr4A 91.171 1563 112 15 4644 6183 696004423 696005982 0.000000e+00 2098.0
8 TraesCS7D01G059000 chr4A 94.055 841 37 10 3700 4531 696003590 696004426 0.000000e+00 1264.0
9 TraesCS7D01G059000 chr4A 91.124 338 19 6 1 335 696000033 696000362 1.220000e-121 448.0
10 TraesCS7D01G059000 chr4A 86.782 174 17 4 242 411 80843708 80843879 8.180000e-44 189.0
11 TraesCS7D01G059000 chr4A 90.196 102 6 3 2287 2386 456485724 456485625 5.030000e-26 130.0
12 TraesCS7D01G059000 chr4A 90.196 102 6 3 2287 2386 456486231 456486132 5.030000e-26 130.0
13 TraesCS7D01G059000 chr4A 90.196 102 6 3 2287 2386 456486529 456486430 5.030000e-26 130.0
14 TraesCS7D01G059000 chr4A 90.196 102 6 3 2287 2386 456487026 456486927 5.030000e-26 130.0
15 TraesCS7D01G059000 chr4A 90.196 102 6 3 2287 2386 456487324 456487225 5.030000e-26 130.0
16 TraesCS7D01G059000 chr7A 98.154 1354 22 1 3181 4531 32028060 32026707 0.000000e+00 2359.0
17 TraesCS7D01G059000 chr7A 91.205 1569 106 13 4644 6183 32026710 32025145 0.000000e+00 2104.0
18 TraesCS7D01G059000 chr7A 95.177 933 38 4 1377 2302 32029738 32028806 0.000000e+00 1467.0
19 TraesCS7D01G059000 chr7A 97.271 733 18 2 2386 3117 32028792 32028061 0.000000e+00 1242.0
20 TraesCS7D01G059000 chr7A 91.626 609 39 7 851 1453 32030318 32029716 0.000000e+00 832.0
21 TraesCS7D01G059000 chr7A 93.058 533 23 6 3926 4454 32303224 32302702 0.000000e+00 767.0
22 TraesCS7D01G059000 chr7A 82.952 393 50 11 413 801 32030713 32030334 7.680000e-89 339.0
23 TraesCS7D01G059000 chr7A 85.811 296 37 2 1904 2195 32037196 32036902 6.020000e-80 309.0
24 TraesCS7D01G059000 chr7A 85.135 296 38 3 1904 2195 32295512 32295219 1.300000e-76 298.0
25 TraesCS7D01G059000 chr7A 90.265 226 20 2 4098 4323 32294094 32293871 1.690000e-75 294.0
26 TraesCS7D01G059000 chr7A 90.741 216 19 1 4096 4311 32035778 32035564 2.820000e-73 287.0
27 TraesCS7D01G059000 chr7A 86.316 95 11 2 2104 2197 32129255 32129162 1.100000e-17 102.0
28 TraesCS7D01G059000 chr3B 85.042 361 51 2 3272 3629 713873021 713872661 1.270000e-96 364.0
29 TraesCS7D01G059000 chrUn 84.488 361 53 2 3272 3629 176720599 176720959 2.740000e-93 353.0
30 TraesCS7D01G059000 chrUn 84.488 361 53 2 3272 3629 176754928 176755288 2.740000e-93 353.0
31 TraesCS7D01G059000 chrUn 84.488 361 53 2 3272 3629 238522529 238522169 2.740000e-93 353.0
32 TraesCS7D01G059000 chrUn 84.488 361 53 2 3272 3629 238536638 238536278 2.740000e-93 353.0
33 TraesCS7D01G059000 chrUn 84.488 361 53 2 3272 3629 271021410 271021050 2.740000e-93 353.0
34 TraesCS7D01G059000 chrUn 84.488 361 53 2 3272 3629 278813470 278813830 2.740000e-93 353.0
35 TraesCS7D01G059000 chrUn 84.828 290 42 2 1909 2197 298011876 298011588 2.180000e-74 291.0
36 TraesCS7D01G059000 chrUn 90.000 220 21 1 4097 4316 298010447 298010229 3.650000e-72 283.0
37 TraesCS7D01G059000 chrUn 88.158 228 24 1 5565 5789 235799321 235799094 1.020000e-67 268.0
38 TraesCS7D01G059000 chrUn 85.892 241 34 0 1904 2144 238523476 238523236 2.210000e-64 257.0
39 TraesCS7D01G059000 chrUn 85.892 241 34 0 1904 2144 238537585 238537345 2.210000e-64 257.0
40 TraesCS7D01G059000 chr6A 85.532 235 30 3 5565 5795 48550179 48549945 6.190000e-60 243.0
41 TraesCS7D01G059000 chr6A 97.458 118 3 0 4530 4647 277889801 277889684 1.050000e-47 202.0
42 TraesCS7D01G059000 chr6D 85.784 204 21 4 5589 5792 298139321 298139516 6.280000e-50 209.0
43 TraesCS7D01G059000 chr6D 81.006 179 30 2 5864 6042 298139551 298139725 8.360000e-29 139.0
44 TraesCS7D01G059000 chr4D 98.305 118 2 0 4530 4647 494875912 494876029 2.260000e-49 207.0
45 TraesCS7D01G059000 chr4D 96.667 120 4 0 4529 4648 55352440 55352559 3.780000e-47 200.0
46 TraesCS7D01G059000 chr3D 94.656 131 7 0 4517 4647 107670950 107671080 2.920000e-48 204.0
47 TraesCS7D01G059000 chr3D 81.421 183 20 2 244 412 247891103 247891285 3.010000e-28 137.0
48 TraesCS7D01G059000 chr2A 97.458 118 3 0 4530 4647 606523687 606523804 1.050000e-47 202.0
49 TraesCS7D01G059000 chr2A 91.753 97 7 1 2291 2386 223717152 223717248 3.890000e-27 134.0
50 TraesCS7D01G059000 chr2A 93.023 86 6 0 2301 2386 334889671 334889586 6.510000e-25 126.0
51 TraesCS7D01G059000 chr1D 95.312 128 5 1 4520 4647 28576525 28576651 1.050000e-47 202.0
52 TraesCS7D01G059000 chr1A 95.902 122 5 0 4528 4649 208212531 208212652 1.360000e-46 198.0
53 TraesCS7D01G059000 chr1A 96.610 118 4 0 4530 4647 498452668 498452785 4.890000e-46 196.0
54 TraesCS7D01G059000 chr1B 94.531 128 5 2 4523 4648 8855858 8855985 4.890000e-46 196.0
55 TraesCS7D01G059000 chr1B 87.407 135 11 4 247 377 462515418 462515550 3.860000e-32 150.0
56 TraesCS7D01G059000 chr1B 81.006 179 30 2 5864 6042 253825118 253825292 8.360000e-29 139.0
57 TraesCS7D01G059000 chr1B 78.283 198 15 11 238 409 470001617 470001812 1.100000e-17 102.0
58 TraesCS7D01G059000 chr1B 91.304 46 2 2 372 415 297098077 297098122 1.860000e-05 62.1
59 TraesCS7D01G059000 chr2B 87.356 174 15 5 244 412 602995418 602995247 6.330000e-45 193.0
60 TraesCS7D01G059000 chr2B 90.756 119 7 3 253 367 389460772 389460890 8.300000e-34 156.0
61 TraesCS7D01G059000 chr2B 81.564 179 25 3 5864 6042 13184341 13184171 2.320000e-29 141.0
62 TraesCS7D01G059000 chr2B 90.196 102 6 3 2285 2386 675339753 675339850 5.030000e-26 130.0
63 TraesCS7D01G059000 chr2B 85.714 119 14 2 5680 5795 745508432 745508314 8.420000e-24 122.0
64 TraesCS7D01G059000 chr2B 86.076 79 11 0 5566 5644 745508512 745508434 1.100000e-12 86.1
65 TraesCS7D01G059000 chr5B 87.943 141 10 5 242 377 433527161 433527299 6.420000e-35 159.0
66 TraesCS7D01G059000 chr5A 87.770 139 11 4 247 381 363848613 363848749 2.310000e-34 158.0
67 TraesCS7D01G059000 chr3A 88.636 132 9 4 250 377 494032690 494032561 8.300000e-34 156.0
68 TraesCS7D01G059000 chr3A 80.328 183 21 3 244 412 256240019 256240200 2.340000e-24 124.0
69 TraesCS7D01G059000 chr5D 87.500 136 11 5 246 377 187954496 187954363 1.070000e-32 152.0
70 TraesCS7D01G059000 chr7B 93.548 93 5 1 2294 2386 690699598 690699507 3.010000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G059000 chr7D 31948139 31954321 6182 True 11418.0 11418 100.000000 1 6183 1 chr7D.!!$R1 6182
1 TraesCS7D01G059000 chr7D 31959134 31960774 1640 True 302.5 305 88.115000 1904 4323 2 chr7D.!!$R3 2419
2 TraesCS7D01G059000 chr4A 696000033 696005982 5949 False 1772.0 2815 93.384000 1 6183 5 chr4A.!!$F2 6182
3 TraesCS7D01G059000 chr7A 32025145 32030713 5568 True 1390.5 2359 92.730833 413 6183 6 chr7A.!!$R3 5770
4 TraesCS7D01G059000 chr7A 32302702 32303224 522 True 767.0 767 93.058000 3926 4454 1 chr7A.!!$R2 528
5 TraesCS7D01G059000 chr7A 32035564 32037196 1632 True 298.0 309 88.276000 1904 4311 2 chr7A.!!$R4 2407
6 TraesCS7D01G059000 chr7A 32293871 32295512 1641 True 296.0 298 87.700000 1904 4323 2 chr7A.!!$R5 2419
7 TraesCS7D01G059000 chrUn 238522169 238523476 1307 True 305.0 353 85.190000 1904 3629 2 chrUn.!!$R3 1725
8 TraesCS7D01G059000 chrUn 238536278 238537585 1307 True 305.0 353 85.190000 1904 3629 2 chrUn.!!$R4 1725
9 TraesCS7D01G059000 chrUn 298010229 298011876 1647 True 287.0 291 87.414000 1909 4316 2 chrUn.!!$R5 2407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.179129 GACTGCCAATCCAATTGCGG 60.179 55.000 0.00 0.00 38.92 5.69 F
1049 1064 0.321021 CAGCTCTCCTCTGTTGCTGT 59.679 55.000 0.00 0.00 44.04 4.40 F
1795 1895 0.036765 TACAGGCTAGTTGGGTTGCG 60.037 55.000 0.00 0.00 0.00 4.85 F
2368 2493 0.039180 GGGAAGGGTCCGACCATTTT 59.961 55.000 18.14 9.49 43.04 1.82 F
2371 2496 0.251608 AAGGGTCCGACCATTTTGGG 60.252 55.000 19.43 0.00 39.55 4.12 F
2372 2497 1.076014 GGGTCCGACCATTTTGGGT 59.924 57.895 19.43 0.00 43.37 4.51 F
2503 2640 1.939934 TGCAAAGTTCAGAGACCAACG 59.060 47.619 0.00 0.00 0.00 4.10 F
3254 3410 3.567164 ACAAAGCTGCATATACCATGCTC 59.433 43.478 10.30 3.16 44.79 4.26 F
3893 4085 3.574826 GGGAGTAGGATTGTAGCTGTAGG 59.425 52.174 0.00 0.00 0.00 3.18 F
4561 4763 0.039165 CGGAAAAGCTTGTCCCAAGC 60.039 55.000 26.94 18.69 43.31 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1191 1206 0.531974 GTTGACGAAGCACAGTCCCA 60.532 55.000 0.00 0.00 36.61 4.37 R
2379 2504 0.034756 TGAAAGCCTTGCTCTGCGTA 59.965 50.000 0.00 0.00 38.25 4.42 R
3439 3595 0.991146 TGGGGTTCTTGCAGAGCATA 59.009 50.000 0.00 0.00 38.76 3.14 R
3816 4007 3.749088 TGGGAAAGTGCATAAACTACGTG 59.251 43.478 0.00 0.00 0.00 4.49 R
4184 4383 4.474303 TTTCATTCTCCCCATGGCATAT 57.526 40.909 6.09 0.00 0.00 1.78 R
4386 4585 3.371487 CCTGTGCCTGACATAACCCAATA 60.371 47.826 0.00 0.00 32.74 1.90 R
4514 4715 8.931568 ACGGAGGGAGTACTTTATTTGTAATAT 58.068 33.333 0.00 0.00 0.00 1.28 R
4539 4741 0.536460 TGGGACAAGCTTTTCCGGAC 60.536 55.000 22.30 11.43 31.92 4.79 R
4695 4898 0.587768 TGCGCTTGATGTCAGTTGTG 59.412 50.000 9.73 0.00 0.00 3.33 R
6111 6341 0.321653 GTAACAGAGGGTGCACCAGG 60.322 60.000 35.78 22.87 43.89 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.613691 CTTGACTGCCAATCCAATTGC 58.386 47.619 0.00 0.00 38.92 3.56
70 71 0.179129 GACTGCCAATCCAATTGCGG 60.179 55.000 0.00 0.00 38.92 5.69
113 114 1.884579 CCAGTTTGCTGAACTCATGCT 59.115 47.619 3.50 0.00 45.40 3.79
169 170 4.617253 TCTTCAGCTTGCTGGTACTTAA 57.383 40.909 20.62 7.25 0.00 1.85
210 211 3.306703 CCAAAGACACAACACAACAATGC 59.693 43.478 0.00 0.00 0.00 3.56
213 214 1.854126 GACACAACACAACAATGCTGC 59.146 47.619 0.00 0.00 0.00 5.25
242 244 1.284785 CCCCCTCAAACATAGCAAGGA 59.715 52.381 0.00 0.00 0.00 3.36
243 245 2.091665 CCCCCTCAAACATAGCAAGGAT 60.092 50.000 0.00 0.00 0.00 3.24
244 246 2.954318 CCCCTCAAACATAGCAAGGATG 59.046 50.000 0.00 0.00 0.00 3.51
246 248 3.379372 CCCTCAAACATAGCAAGGATGTG 59.621 47.826 0.00 0.00 37.59 3.21
247 249 4.264253 CCTCAAACATAGCAAGGATGTGA 58.736 43.478 0.00 0.00 37.59 3.58
248 250 4.885907 CCTCAAACATAGCAAGGATGTGAT 59.114 41.667 0.00 0.00 37.59 3.06
249 251 5.220989 CCTCAAACATAGCAAGGATGTGATG 60.221 44.000 0.00 0.00 37.59 3.07
263 266 2.440980 GATGGGGAGCCTTGGCAC 60.441 66.667 14.54 7.49 0.00 5.01
273 276 1.801309 GCCTTGGCACAGCGGTAAAA 61.801 55.000 6.79 0.00 42.39 1.52
293 296 1.133823 ACTGTTGCCTTGTGACCATGA 60.134 47.619 0.00 0.00 0.00 3.07
294 297 1.538512 CTGTTGCCTTGTGACCATGAG 59.461 52.381 0.00 0.00 0.00 2.90
295 298 0.883833 GTTGCCTTGTGACCATGAGG 59.116 55.000 0.00 0.00 42.21 3.86
307 310 2.566833 CCATGAGGTCACAGGTTCAA 57.433 50.000 0.00 0.00 0.00 2.69
313 316 2.897969 GAGGTCACAGGTTCAAGTCCTA 59.102 50.000 0.00 0.00 33.54 2.94
316 319 3.181458 GGTCACAGGTTCAAGTCCTACAA 60.181 47.826 0.00 0.00 33.54 2.41
317 320 3.808174 GTCACAGGTTCAAGTCCTACAAC 59.192 47.826 0.00 0.00 33.54 3.32
334 337 5.352569 CCTACAACCTCTTGCAGAAATGTAG 59.647 44.000 14.43 14.43 36.05 2.74
335 338 4.718961 ACAACCTCTTGCAGAAATGTAGT 58.281 39.130 0.00 0.00 0.00 2.73
336 339 4.516698 ACAACCTCTTGCAGAAATGTAGTG 59.483 41.667 0.00 0.00 0.00 2.74
337 340 4.623932 ACCTCTTGCAGAAATGTAGTGA 57.376 40.909 0.00 0.00 0.00 3.41
338 341 4.973168 ACCTCTTGCAGAAATGTAGTGAA 58.027 39.130 0.00 0.00 0.00 3.18
339 342 5.376625 ACCTCTTGCAGAAATGTAGTGAAA 58.623 37.500 0.00 0.00 0.00 2.69
340 343 5.471456 ACCTCTTGCAGAAATGTAGTGAAAG 59.529 40.000 0.00 0.00 0.00 2.62
341 344 5.106396 CCTCTTGCAGAAATGTAGTGAAAGG 60.106 44.000 0.00 0.00 28.98 3.11
342 345 4.216257 TCTTGCAGAAATGTAGTGAAAGGC 59.784 41.667 0.00 0.00 28.98 4.35
343 346 3.754965 TGCAGAAATGTAGTGAAAGGCT 58.245 40.909 0.00 0.00 0.00 4.58
344 347 3.503363 TGCAGAAATGTAGTGAAAGGCTG 59.497 43.478 0.00 0.00 0.00 4.85
345 348 3.671702 GCAGAAATGTAGTGAAAGGCTGC 60.672 47.826 0.00 0.00 39.28 5.25
346 349 3.503363 CAGAAATGTAGTGAAAGGCTGCA 59.497 43.478 0.50 0.00 33.44 4.41
347 350 3.503748 AGAAATGTAGTGAAAGGCTGCAC 59.496 43.478 11.56 11.56 31.82 4.57
348 351 2.566833 ATGTAGTGAAAGGCTGCACA 57.433 45.000 19.05 4.39 37.48 4.57
349 352 1.593196 TGTAGTGAAAGGCTGCACAC 58.407 50.000 19.05 14.46 37.48 3.82
350 353 1.134250 TGTAGTGAAAGGCTGCACACA 60.134 47.619 19.05 16.89 37.48 3.72
351 354 1.946768 GTAGTGAAAGGCTGCACACAA 59.053 47.619 19.05 5.39 37.48 3.33
352 355 1.473258 AGTGAAAGGCTGCACACAAA 58.527 45.000 19.05 0.00 37.48 2.83
353 356 1.824230 AGTGAAAGGCTGCACACAAAA 59.176 42.857 19.05 0.00 37.48 2.44
354 357 2.159198 AGTGAAAGGCTGCACACAAAAG 60.159 45.455 19.05 0.00 37.48 2.27
355 358 2.098614 TGAAAGGCTGCACACAAAAGA 58.901 42.857 0.50 0.00 0.00 2.52
356 359 2.159254 TGAAAGGCTGCACACAAAAGAC 60.159 45.455 0.50 0.00 0.00 3.01
357 360 0.746659 AAGGCTGCACACAAAAGACC 59.253 50.000 0.50 0.00 0.00 3.85
358 361 1.109323 AGGCTGCACACAAAAGACCC 61.109 55.000 0.50 0.00 0.00 4.46
359 362 1.391157 GGCTGCACACAAAAGACCCA 61.391 55.000 0.50 0.00 0.00 4.51
360 363 0.459489 GCTGCACACAAAAGACCCAA 59.541 50.000 0.00 0.00 0.00 4.12
361 364 1.134848 GCTGCACACAAAAGACCCAAA 60.135 47.619 0.00 0.00 0.00 3.28
362 365 2.813061 CTGCACACAAAAGACCCAAAG 58.187 47.619 0.00 0.00 0.00 2.77
363 366 2.166254 CTGCACACAAAAGACCCAAAGT 59.834 45.455 0.00 0.00 0.00 2.66
364 367 2.094286 TGCACACAAAAGACCCAAAGTG 60.094 45.455 0.00 0.00 0.00 3.16
365 368 2.738321 GCACACAAAAGACCCAAAGTGG 60.738 50.000 0.00 0.00 37.25 4.00
366 369 2.495669 CACACAAAAGACCCAAAGTGGT 59.504 45.455 0.00 0.00 42.79 4.16
371 374 3.655481 GACCCAAAGTGGTCGCAG 58.345 61.111 0.00 0.00 44.98 5.18
372 375 1.070786 GACCCAAAGTGGTCGCAGA 59.929 57.895 0.00 0.00 44.98 4.26
393 396 2.047274 TGCGCAAGTGGGAGCTAC 60.047 61.111 8.16 0.00 41.68 3.58
409 412 3.177194 TACGTGCACCAAGCTGCCT 62.177 57.895 12.15 0.00 45.94 4.75
481 486 2.789409 AAGTCCTAAGACCACATGCC 57.211 50.000 0.00 0.00 44.72 4.40
482 487 1.656587 AGTCCTAAGACCACATGCCA 58.343 50.000 0.00 0.00 44.72 4.92
483 488 1.556911 AGTCCTAAGACCACATGCCAG 59.443 52.381 0.00 0.00 44.72 4.85
484 489 1.279271 GTCCTAAGACCACATGCCAGT 59.721 52.381 0.00 0.00 37.00 4.00
485 490 1.278985 TCCTAAGACCACATGCCAGTG 59.721 52.381 0.00 0.00 39.21 3.66
486 491 1.278985 CCTAAGACCACATGCCAGTGA 59.721 52.381 7.16 0.00 42.05 3.41
487 492 2.625737 CTAAGACCACATGCCAGTGAG 58.374 52.381 7.16 1.11 42.05 3.51
488 493 0.767375 AAGACCACATGCCAGTGAGT 59.233 50.000 7.16 3.93 42.05 3.41
561 567 3.698539 TGAATCTTCAACACAGTTGCCAA 59.301 39.130 5.06 0.00 33.55 4.52
563 569 3.713858 TCTTCAACACAGTTGCCAATG 57.286 42.857 5.06 0.00 0.00 2.82
566 572 3.921119 TCAACACAGTTGCCAATGATC 57.079 42.857 5.06 0.00 0.00 2.92
625 631 7.176865 CACTATCTTGGTCTTCCCGATTAGATA 59.823 40.741 0.00 0.00 35.15 1.98
819 828 4.082787 AGCCATTTGAATAGTTTGACCACG 60.083 41.667 0.00 0.00 0.00 4.94
846 855 3.646162 TGCCCACTTACTATCATACAGGG 59.354 47.826 0.00 0.00 36.85 4.45
849 858 4.503296 CCCACTTACTATCATACAGGGCAC 60.503 50.000 0.00 0.00 0.00 5.01
1041 1056 1.688884 GGCTTCCCAGCTCTCCTCT 60.689 63.158 0.00 0.00 46.44 3.69
1049 1064 0.321021 CAGCTCTCCTCTGTTGCTGT 59.679 55.000 0.00 0.00 44.04 4.40
1177 1192 2.596851 GCCCAGAGAGCCCAAGACA 61.597 63.158 0.00 0.00 0.00 3.41
1191 1206 2.045926 GACAGGCCACCGCTCATT 60.046 61.111 5.01 0.00 34.44 2.57
1236 1251 6.319658 TGAAGAACTTTGACAAGCTCTTTGAT 59.680 34.615 8.86 0.00 42.89 2.57
1375 1390 8.188799 TCAGTAAATACAGTAAGGTGATTCTCG 58.811 37.037 0.00 0.00 0.00 4.04
1539 1610 9.511272 TCCTGAAGATTTATACAATGGATGATG 57.489 33.333 0.00 0.00 0.00 3.07
1662 1762 6.423905 TCAGCTGACAGTTATTAAGTTCACAC 59.576 38.462 13.74 0.00 0.00 3.82
1663 1763 6.202762 CAGCTGACAGTTATTAAGTTCACACA 59.797 38.462 8.42 0.00 0.00 3.72
1664 1764 6.202954 AGCTGACAGTTATTAAGTTCACACAC 59.797 38.462 3.99 0.00 0.00 3.82
1665 1765 6.018262 GCTGACAGTTATTAAGTTCACACACA 60.018 38.462 3.99 0.00 0.00 3.72
1666 1766 7.241663 TGACAGTTATTAAGTTCACACACAC 57.758 36.000 0.00 0.00 0.00 3.82
1667 1767 6.819146 TGACAGTTATTAAGTTCACACACACA 59.181 34.615 0.00 0.00 0.00 3.72
1668 1768 7.334671 TGACAGTTATTAAGTTCACACACACAA 59.665 33.333 0.00 0.00 0.00 3.33
1669 1769 8.220755 ACAGTTATTAAGTTCACACACACAAT 57.779 30.769 0.00 0.00 0.00 2.71
1670 1770 8.342634 ACAGTTATTAAGTTCACACACACAATC 58.657 33.333 0.00 0.00 0.00 2.67
1671 1771 8.559536 CAGTTATTAAGTTCACACACACAATCT 58.440 33.333 0.00 0.00 0.00 2.40
1672 1772 9.772973 AGTTATTAAGTTCACACACACAATCTA 57.227 29.630 0.00 0.00 0.00 1.98
1673 1773 9.807386 GTTATTAAGTTCACACACACAATCTAC 57.193 33.333 0.00 0.00 0.00 2.59
1674 1774 9.772973 TTATTAAGTTCACACACACAATCTACT 57.227 29.630 0.00 0.00 0.00 2.57
1675 1775 7.709269 TTAAGTTCACACACACAATCTACTC 57.291 36.000 0.00 0.00 0.00 2.59
1676 1776 5.276461 AGTTCACACACACAATCTACTCA 57.724 39.130 0.00 0.00 0.00 3.41
1677 1777 5.858381 AGTTCACACACACAATCTACTCAT 58.142 37.500 0.00 0.00 0.00 2.90
1678 1778 6.993079 AGTTCACACACACAATCTACTCATA 58.007 36.000 0.00 0.00 0.00 2.15
1679 1779 7.093354 AGTTCACACACACAATCTACTCATAG 58.907 38.462 0.00 0.00 0.00 2.23
1680 1780 6.590234 TCACACACACAATCTACTCATAGT 57.410 37.500 0.00 0.00 0.00 2.12
1681 1781 6.389906 TCACACACACAATCTACTCATAGTG 58.610 40.000 0.00 0.00 0.00 2.74
1682 1782 5.062683 CACACACACAATCTACTCATAGTGC 59.937 44.000 0.00 0.00 0.00 4.40
1683 1783 5.170748 CACACACAATCTACTCATAGTGCA 58.829 41.667 0.00 0.00 0.00 4.57
1684 1784 5.639082 CACACACAATCTACTCATAGTGCAA 59.361 40.000 0.00 0.00 0.00 4.08
1685 1785 6.314648 CACACACAATCTACTCATAGTGCAAT 59.685 38.462 0.00 0.00 0.00 3.56
1686 1786 7.492344 CACACACAATCTACTCATAGTGCAATA 59.508 37.037 0.00 0.00 0.00 1.90
1687 1787 7.492669 ACACACAATCTACTCATAGTGCAATAC 59.507 37.037 0.00 0.00 0.00 1.89
1688 1788 7.492344 CACACAATCTACTCATAGTGCAATACA 59.508 37.037 0.00 0.00 0.00 2.29
1774 1874 6.965607 AGGCAGCTATTAACCTTAAACCTAA 58.034 36.000 0.00 0.00 0.00 2.69
1795 1895 0.036765 TACAGGCTAGTTGGGTTGCG 60.037 55.000 0.00 0.00 0.00 4.85
1823 1923 7.947282 TGTTTTACCCCTACAAGAAAAAGATG 58.053 34.615 0.00 0.00 0.00 2.90
2326 2451 2.360600 GGCAACCCGGTGCATGTA 60.361 61.111 17.82 0.00 46.81 2.29
2327 2452 2.406616 GGCAACCCGGTGCATGTAG 61.407 63.158 17.82 0.00 46.81 2.74
2328 2453 3.051392 GCAACCCGGTGCATGTAGC 62.051 63.158 11.92 2.56 44.29 3.58
2329 2454 1.377202 CAACCCGGTGCATGTAGCT 60.377 57.895 11.25 0.00 45.94 3.32
2330 2455 1.078426 AACCCGGTGCATGTAGCTC 60.078 57.895 11.25 0.00 45.94 4.09
2336 2461 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2337 2462 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2338 2463 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2339 2464 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2342 2467 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2358 2483 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
2365 2490 2.691252 GGGGAAGGGTCCGACCAT 60.691 66.667 19.43 9.67 46.04 3.55
2366 2491 2.306384 GGGGAAGGGTCCGACCATT 61.306 63.158 17.19 17.19 46.04 3.16
2367 2492 1.689412 GGGAAGGGTCCGACCATTT 59.311 57.895 18.14 11.86 43.04 2.32
2368 2493 0.039180 GGGAAGGGTCCGACCATTTT 59.961 55.000 18.14 9.49 43.04 1.82
2369 2494 1.173913 GGAAGGGTCCGACCATTTTG 58.826 55.000 18.14 0.00 43.04 2.44
2370 2495 1.173913 GAAGGGTCCGACCATTTTGG 58.826 55.000 18.14 0.00 43.04 3.28
2371 2496 0.251608 AAGGGTCCGACCATTTTGGG 60.252 55.000 19.43 0.00 39.55 4.12
2372 2497 1.076014 GGGTCCGACCATTTTGGGT 59.924 57.895 19.43 0.00 43.37 4.51
2383 2508 3.754850 ACCATTTTGGGTCTTTAGTACGC 59.245 43.478 0.00 0.00 43.37 4.42
2384 2509 3.754323 CCATTTTGGGTCTTTAGTACGCA 59.246 43.478 0.00 0.00 37.94 5.24
2503 2640 1.939934 TGCAAAGTTCAGAGACCAACG 59.060 47.619 0.00 0.00 0.00 4.10
2981 3137 6.429692 TGGCATTGAAATAGATATTGGTACCG 59.570 38.462 7.57 0.00 0.00 4.02
3117 3273 4.640771 AGTACAATGTTGGTCATCTGGT 57.359 40.909 0.00 0.00 35.48 4.00
3170 3326 7.756395 ATGATGTGCTTTATAAATCTGGAGG 57.244 36.000 0.00 0.00 0.00 4.30
3192 3348 4.574013 GGAAGTTCAGAATATGGTCAGCTG 59.426 45.833 7.63 7.63 0.00 4.24
3254 3410 3.567164 ACAAAGCTGCATATACCATGCTC 59.433 43.478 10.30 3.16 44.79 4.26
3267 3423 9.822185 CATATACCATGCTCTATTAACTATGCA 57.178 33.333 0.00 0.00 34.88 3.96
3439 3595 8.806146 GCAAATACCCTATCATGGTTCATTTAT 58.194 33.333 0.00 0.00 37.31 1.40
3893 4085 3.574826 GGGAGTAGGATTGTAGCTGTAGG 59.425 52.174 0.00 0.00 0.00 3.18
4514 4715 9.677567 GTTGTTAAGACAGAAAATCAAGCATTA 57.322 29.630 0.00 0.00 37.04 1.90
4540 4742 6.610075 TTACAAATAAAGTACTCCCTCCGT 57.390 37.500 0.00 0.00 0.00 4.69
4541 4743 5.082251 ACAAATAAAGTACTCCCTCCGTC 57.918 43.478 0.00 0.00 0.00 4.79
4542 4744 4.081254 ACAAATAAAGTACTCCCTCCGTCC 60.081 45.833 0.00 0.00 0.00 4.79
4543 4745 1.755179 TAAAGTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
4544 4746 0.969409 AAAGTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
4545 4747 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
4546 4748 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4547 4749 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4548 4750 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
4549 4751 1.218316 CTCCCTCCGTCCGGAAAAG 59.782 63.158 5.23 3.59 44.66 2.27
4550 4752 2.436115 CCCTCCGTCCGGAAAAGC 60.436 66.667 5.23 0.00 44.66 3.51
4551 4753 2.663196 CCTCCGTCCGGAAAAGCT 59.337 61.111 5.23 0.00 44.66 3.74
4552 4754 1.003718 CCTCCGTCCGGAAAAGCTT 60.004 57.895 5.23 0.00 44.66 3.74
4553 4755 1.298859 CCTCCGTCCGGAAAAGCTTG 61.299 60.000 5.23 0.00 44.66 4.01
4554 4756 0.602905 CTCCGTCCGGAAAAGCTTGT 60.603 55.000 5.23 0.00 44.66 3.16
4555 4757 0.601841 TCCGTCCGGAAAAGCTTGTC 60.602 55.000 5.23 8.23 42.05 3.18
4556 4758 1.574702 CCGTCCGGAAAAGCTTGTCC 61.575 60.000 24.00 24.00 37.50 4.02
4557 4759 1.574702 CGTCCGGAAAAGCTTGTCCC 61.575 60.000 26.94 13.97 0.00 4.46
4558 4760 0.536460 GTCCGGAAAAGCTTGTCCCA 60.536 55.000 26.94 13.18 0.00 4.37
4559 4761 0.183971 TCCGGAAAAGCTTGTCCCAA 59.816 50.000 26.94 14.20 0.00 4.12
4560 4762 0.598065 CCGGAAAAGCTTGTCCCAAG 59.402 55.000 26.94 14.69 0.00 3.61
4561 4763 0.039165 CGGAAAAGCTTGTCCCAAGC 60.039 55.000 26.94 18.69 43.31 4.01
4567 4769 3.873805 GCTTGTCCCAAGCTTGTTC 57.126 52.632 24.35 14.17 40.01 3.18
4568 4770 0.315251 GCTTGTCCCAAGCTTGTTCC 59.685 55.000 24.35 11.81 40.01 3.62
4569 4771 1.986882 CTTGTCCCAAGCTTGTTCCT 58.013 50.000 24.35 0.00 0.00 3.36
4570 4772 1.882623 CTTGTCCCAAGCTTGTTCCTC 59.117 52.381 24.35 10.65 0.00 3.71
4571 4773 0.843309 TGTCCCAAGCTTGTTCCTCA 59.157 50.000 24.35 12.85 0.00 3.86
4572 4774 1.214175 TGTCCCAAGCTTGTTCCTCAA 59.786 47.619 24.35 1.41 34.61 3.02
4573 4775 2.306847 GTCCCAAGCTTGTTCCTCAAA 58.693 47.619 24.35 0.00 35.48 2.69
4574 4776 2.893489 GTCCCAAGCTTGTTCCTCAAAT 59.107 45.455 24.35 0.00 35.48 2.32
4575 4777 2.892852 TCCCAAGCTTGTTCCTCAAATG 59.107 45.455 24.35 5.47 35.48 2.32
4576 4778 2.028748 CCCAAGCTTGTTCCTCAAATGG 60.029 50.000 24.35 10.71 35.48 3.16
4577 4779 2.892852 CCAAGCTTGTTCCTCAAATGGA 59.107 45.455 24.35 0.00 36.92 3.41
4578 4780 3.512724 CCAAGCTTGTTCCTCAAATGGAT 59.487 43.478 24.35 0.00 36.92 3.41
4579 4781 4.491676 CAAGCTTGTTCCTCAAATGGATG 58.508 43.478 18.65 0.00 35.83 3.51
4580 4782 3.771216 AGCTTGTTCCTCAAATGGATGT 58.229 40.909 0.00 0.00 35.83 3.06
4581 4783 4.922206 AGCTTGTTCCTCAAATGGATGTA 58.078 39.130 0.00 0.00 35.83 2.29
4582 4784 5.513233 AGCTTGTTCCTCAAATGGATGTAT 58.487 37.500 0.00 0.00 35.83 2.29
4583 4785 5.591877 AGCTTGTTCCTCAAATGGATGTATC 59.408 40.000 0.00 0.00 35.83 2.24
4584 4786 5.591877 GCTTGTTCCTCAAATGGATGTATCT 59.408 40.000 0.00 0.00 35.83 1.98
4585 4787 6.767902 GCTTGTTCCTCAAATGGATGTATCTA 59.232 38.462 0.00 0.00 35.83 1.98
4586 4788 7.041508 GCTTGTTCCTCAAATGGATGTATCTAG 60.042 40.741 0.00 0.00 35.83 2.43
4587 4789 6.291377 TGTTCCTCAAATGGATGTATCTAGC 58.709 40.000 0.00 0.00 35.83 3.42
4588 4790 6.126796 TGTTCCTCAAATGGATGTATCTAGCA 60.127 38.462 0.00 0.00 35.83 3.49
4589 4791 5.858381 TCCTCAAATGGATGTATCTAGCAC 58.142 41.667 0.00 0.00 0.00 4.40
4590 4792 5.604231 TCCTCAAATGGATGTATCTAGCACT 59.396 40.000 0.00 0.00 0.00 4.40
4591 4793 6.782494 TCCTCAAATGGATGTATCTAGCACTA 59.218 38.462 0.00 0.00 0.00 2.74
4592 4794 7.290014 TCCTCAAATGGATGTATCTAGCACTAA 59.710 37.037 0.00 0.00 0.00 2.24
4593 4795 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
4594 4796 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
4595 4797 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
4596 4798 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
4597 4799 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
4598 4800 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
4599 4801 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
4611 4813 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
4612 4814 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
4613 4815 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
4614 4816 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
4615 4817 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
4616 4818 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
4617 4819 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
4618 4820 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
4619 4821 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
4620 4822 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
4621 4823 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
4622 4824 5.012458 TGCTAGATACATCCATTTGAGGGAG 59.988 44.000 0.00 0.00 37.96 4.30
4623 4825 5.247110 GCTAGATACATCCATTTGAGGGAGA 59.753 44.000 0.00 0.00 37.96 3.71
4624 4826 6.239714 GCTAGATACATCCATTTGAGGGAGAA 60.240 42.308 0.00 0.00 37.96 2.87
4625 4827 6.185114 AGATACATCCATTTGAGGGAGAAG 57.815 41.667 0.00 0.00 37.96 2.85
4626 4828 5.669447 AGATACATCCATTTGAGGGAGAAGT 59.331 40.000 0.00 0.00 37.96 3.01
4627 4829 4.664688 ACATCCATTTGAGGGAGAAGTT 57.335 40.909 0.00 0.00 37.96 2.66
4628 4830 5.003096 ACATCCATTTGAGGGAGAAGTTT 57.997 39.130 0.00 0.00 37.96 2.66
4629 4831 5.397360 ACATCCATTTGAGGGAGAAGTTTT 58.603 37.500 0.00 0.00 37.96 2.43
4630 4832 5.840693 ACATCCATTTGAGGGAGAAGTTTTT 59.159 36.000 0.00 0.00 37.96 1.94
4645 4847 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
4646 4848 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
4660 4862 2.092323 GGGAGTAGGAAACAACATGGC 58.908 52.381 0.00 0.00 0.00 4.40
4682 4885 5.503662 CACTAATTGCTAATGGATGTGCA 57.496 39.130 0.00 0.00 0.00 4.57
4695 4898 4.009675 TGGATGTGCATTCAGAAAGTACC 58.990 43.478 4.44 0.00 0.00 3.34
4696 4899 4.009675 GGATGTGCATTCAGAAAGTACCA 58.990 43.478 4.44 0.00 0.00 3.25
4714 4917 0.587768 CACAACTGACATCAAGCGCA 59.412 50.000 11.47 0.00 0.00 6.09
4755 4958 5.914898 AAAAGTCTGCCTGTGTTAAAGTT 57.085 34.783 0.00 0.00 0.00 2.66
4859 5063 1.987807 CTTCCCATGATCAGGCGGGT 61.988 60.000 21.23 0.00 39.87 5.28
4922 5126 2.355010 AAATCATGGCTGCTACCCTC 57.645 50.000 0.00 0.00 0.00 4.30
5006 5210 6.615316 TGTTTACTCTCCATATGGATCAAGGA 59.385 38.462 24.73 16.21 44.46 3.36
5111 5315 9.143155 TCATATGTAAATCTCCAACAGCTACTA 57.857 33.333 1.90 0.00 0.00 1.82
5141 5345 9.508642 TGACAAGTTGTAATAATAATGTGGACA 57.491 29.630 8.88 0.00 0.00 4.02
5321 5547 6.071784 TCACAATTGCTTACAAGAGATTGCAT 60.072 34.615 5.05 0.00 39.69 3.96
5324 5550 8.472413 ACAATTGCTTACAAGAGATTGCATAAT 58.528 29.630 5.05 0.00 39.69 1.28
5330 5556 8.589629 GCTTACAAGAGATTGCATAATTTGTTG 58.410 33.333 8.67 4.12 37.55 3.33
5380 5606 9.853177 ATAAGAAGGTCCAAGATAAATGGTTAG 57.147 33.333 0.00 0.00 39.09 2.34
5512 5738 3.973206 TCCAAATGACTCTTCCGCTAA 57.027 42.857 0.00 0.00 0.00 3.09
5554 5780 9.405587 ACATTTAATCCACGAAATAACAAAGTG 57.594 29.630 0.00 0.00 0.00 3.16
5577 5803 6.401394 TGAATGAGTTCACATAGAAGGACAG 58.599 40.000 0.00 0.00 39.36 3.51
5617 5843 2.310538 GGGAATGATAGCTTTGGTGGG 58.689 52.381 0.00 0.00 0.00 4.61
5623 5849 2.270874 ATAGCTTTGGTGGGGCCTCG 62.271 60.000 0.84 0.00 38.35 4.63
5679 5905 2.478831 GAATTCCAGATGAGTCTCGGC 58.521 52.381 0.00 0.00 30.42 5.54
5726 5952 3.986996 TCTCATCCAGATGTCTGCAAA 57.013 42.857 7.48 0.00 42.47 3.68
5730 5956 3.503363 TCATCCAGATGTCTGCAAACAAC 59.497 43.478 0.00 0.00 42.47 3.32
5742 5968 4.025229 TCTGCAAACAACGACACAAGATAC 60.025 41.667 0.00 0.00 0.00 2.24
5743 5969 3.623510 TGCAAACAACGACACAAGATACA 59.376 39.130 0.00 0.00 0.00 2.29
5748 5974 7.537306 GCAAACAACGACACAAGATACATTATT 59.463 33.333 0.00 0.00 0.00 1.40
5789 6015 2.069273 CACGAGTGAATGTGGAGGTTC 58.931 52.381 0.00 0.00 32.47 3.62
5815 6041 2.100989 AGCAGGTGCCTACTACACTAC 58.899 52.381 0.00 0.00 43.38 2.73
5832 6058 6.354794 ACACTACAGCATTTGTCCTAGTTA 57.645 37.500 0.00 0.00 41.29 2.24
5918 6148 5.990996 CACCAGGCAACATAGAAACAAAATT 59.009 36.000 0.00 0.00 41.41 1.82
5920 6150 5.409214 CCAGGCAACATAGAAACAAAATTGG 59.591 40.000 0.00 0.00 41.41 3.16
5922 6152 7.151308 CAGGCAACATAGAAACAAAATTGGTA 58.849 34.615 0.00 0.00 41.41 3.25
5949 6179 0.530744 AAAGCTACACGATCCGAGCA 59.469 50.000 0.00 0.00 37.40 4.26
5963 6193 0.239347 CGAGCAAAGCAAACCAGGAG 59.761 55.000 0.00 0.00 0.00 3.69
5964 6194 1.322442 GAGCAAAGCAAACCAGGAGT 58.678 50.000 0.00 0.00 0.00 3.85
6008 6238 5.529060 TCACTTCTTCCTTTTCTGCTTCTTC 59.471 40.000 0.00 0.00 0.00 2.87
6059 6289 1.558233 AACGGAGATCCTCGACCTTT 58.442 50.000 11.50 0.00 0.00 3.11
6064 6294 0.340208 AGATCCTCGACCTTTCCCCT 59.660 55.000 0.00 0.00 0.00 4.79
6074 6304 2.645297 GACCTTTCCCCTCTTCCTCTTT 59.355 50.000 0.00 0.00 0.00 2.52
6080 6310 6.467339 CCTTTCCCCTCTTCCTCTTTTTCTTA 60.467 42.308 0.00 0.00 0.00 2.10
6092 6322 2.570415 TTTTCTTACCACCATCGGCA 57.430 45.000 0.00 0.00 0.00 5.69
6093 6323 1.816074 TTTCTTACCACCATCGGCAC 58.184 50.000 0.00 0.00 0.00 5.01
6098 6328 4.758251 CCACCATCGGCACTCGCA 62.758 66.667 0.00 0.00 41.24 5.10
6099 6329 3.490759 CACCATCGGCACTCGCAC 61.491 66.667 0.00 0.00 41.24 5.34
6107 6337 2.505118 GCACTCGCACTCTCGTCC 60.505 66.667 0.00 0.00 38.36 4.79
6109 6339 3.432588 ACTCGCACTCTCGTCCGG 61.433 66.667 0.00 0.00 0.00 5.14
6127 6357 3.252284 CCCTGGTGCACCCTCTGT 61.252 66.667 32.62 0.00 34.29 3.41
6129 6359 1.488705 CCCTGGTGCACCCTCTGTTA 61.489 60.000 32.62 11.58 34.29 2.41
6159 6389 2.348998 CGGCAGCCTCCAAGTTCT 59.651 61.111 10.54 0.00 0.00 3.01
6167 6397 2.639839 AGCCTCCAAGTTCTGCTTCTTA 59.360 45.455 0.00 0.00 34.69 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 6.533819 TGATGGCGAAACTAAATTATACCG 57.466 37.500 0.00 0.00 0.00 4.02
70 71 8.094798 TGGATGATGGCGAAACTAAATTATAC 57.905 34.615 0.00 0.00 0.00 1.47
161 162 6.458210 TGTACTTACTTGGCTGTTAAGTACC 58.542 40.000 24.24 15.00 45.93 3.34
169 170 4.634012 TGGAATGTACTTACTTGGCTGT 57.366 40.909 0.00 0.00 0.00 4.40
180 181 5.189928 TGTGTTGTGTCTTTGGAATGTACT 58.810 37.500 0.00 0.00 0.00 2.73
226 227 5.220989 CCATCACATCCTTGCTATGTTTGAG 60.221 44.000 0.00 0.00 35.39 3.02
227 228 4.641541 CCATCACATCCTTGCTATGTTTGA 59.358 41.667 0.00 0.00 35.39 2.69
228 229 4.202080 CCCATCACATCCTTGCTATGTTTG 60.202 45.833 0.00 0.00 35.39 2.93
240 242 0.466922 CAAGGCTCCCCATCACATCC 60.467 60.000 0.00 0.00 0.00 3.51
242 244 1.616921 CCAAGGCTCCCCATCACAT 59.383 57.895 0.00 0.00 0.00 3.21
243 245 3.089838 CCAAGGCTCCCCATCACA 58.910 61.111 0.00 0.00 0.00 3.58
244 246 2.440980 GCCAAGGCTCCCCATCAC 60.441 66.667 3.29 0.00 38.26 3.06
246 248 2.440980 GTGCCAAGGCTCCCCATC 60.441 66.667 12.96 0.00 42.51 3.51
247 249 3.267233 TGTGCCAAGGCTCCCCAT 61.267 61.111 12.96 0.00 42.51 4.00
248 250 3.970410 CTGTGCCAAGGCTCCCCA 61.970 66.667 12.96 3.32 42.51 4.96
263 266 0.951558 AGGCAACAGTTTTACCGCTG 59.048 50.000 0.00 0.00 41.41 5.18
269 272 3.357203 TGGTCACAAGGCAACAGTTTTA 58.643 40.909 0.00 0.00 41.41 1.52
273 276 1.133823 TCATGGTCACAAGGCAACAGT 60.134 47.619 0.00 0.00 41.41 3.55
293 296 1.807814 AGGACTTGAACCTGTGACCT 58.192 50.000 0.00 0.00 36.30 3.85
294 297 2.367567 TGTAGGACTTGAACCTGTGACC 59.632 50.000 0.00 0.00 38.31 4.02
295 298 3.746045 TGTAGGACTTGAACCTGTGAC 57.254 47.619 0.00 0.00 38.31 3.67
296 299 3.181458 GGTTGTAGGACTTGAACCTGTGA 60.181 47.826 0.00 0.00 38.31 3.58
297 300 3.139077 GGTTGTAGGACTTGAACCTGTG 58.861 50.000 0.00 0.00 38.31 3.66
298 301 3.046374 AGGTTGTAGGACTTGAACCTGT 58.954 45.455 11.70 0.00 45.23 4.00
299 302 3.325135 AGAGGTTGTAGGACTTGAACCTG 59.675 47.826 15.48 0.00 46.59 4.00
306 309 2.972713 TCTGCAAGAGGTTGTAGGACTT 59.027 45.455 3.81 0.00 44.26 3.01
307 310 2.609747 TCTGCAAGAGGTTGTAGGACT 58.390 47.619 3.81 0.00 44.26 3.85
334 337 2.159254 TCTTTTGTGTGCAGCCTTTCAC 60.159 45.455 0.00 0.00 0.00 3.18
335 338 2.098614 TCTTTTGTGTGCAGCCTTTCA 58.901 42.857 0.00 0.00 0.00 2.69
336 339 2.463876 GTCTTTTGTGTGCAGCCTTTC 58.536 47.619 0.00 0.00 0.00 2.62
337 340 1.136891 GGTCTTTTGTGTGCAGCCTTT 59.863 47.619 0.00 0.00 0.00 3.11
338 341 0.746659 GGTCTTTTGTGTGCAGCCTT 59.253 50.000 0.00 0.00 0.00 4.35
339 342 1.109323 GGGTCTTTTGTGTGCAGCCT 61.109 55.000 0.00 0.00 0.00 4.58
340 343 1.363807 GGGTCTTTTGTGTGCAGCC 59.636 57.895 0.00 0.00 0.00 4.85
341 344 0.459489 TTGGGTCTTTTGTGTGCAGC 59.541 50.000 0.00 0.00 0.00 5.25
342 345 2.166254 ACTTTGGGTCTTTTGTGTGCAG 59.834 45.455 0.00 0.00 0.00 4.41
343 346 2.094286 CACTTTGGGTCTTTTGTGTGCA 60.094 45.455 0.00 0.00 0.00 4.57
344 347 2.539476 CACTTTGGGTCTTTTGTGTGC 58.461 47.619 0.00 0.00 0.00 4.57
345 348 2.495669 ACCACTTTGGGTCTTTTGTGTG 59.504 45.455 0.00 0.00 43.37 3.82
346 349 2.815158 ACCACTTTGGGTCTTTTGTGT 58.185 42.857 0.00 0.00 43.37 3.72
355 358 1.227853 GTCTGCGACCACTTTGGGT 60.228 57.895 0.00 0.00 43.37 4.51
356 359 3.655481 GTCTGCGACCACTTTGGG 58.345 61.111 0.00 0.00 43.37 4.12
369 372 3.052082 CCACTTGCGCAGGGTCTG 61.052 66.667 24.27 12.69 34.12 3.51
370 373 4.335647 CCCACTTGCGCAGGGTCT 62.336 66.667 24.27 0.00 37.81 3.85
371 374 4.329545 TCCCACTTGCGCAGGGTC 62.330 66.667 27.15 0.00 43.31 4.46
372 375 4.335647 CTCCCACTTGCGCAGGGT 62.336 66.667 27.15 19.65 43.31 4.34
374 377 3.315142 TAGCTCCCACTTGCGCAGG 62.315 63.158 19.01 19.01 0.00 4.85
375 378 2.103042 GTAGCTCCCACTTGCGCAG 61.103 63.158 11.31 7.81 0.00 5.18
376 379 2.047274 GTAGCTCCCACTTGCGCA 60.047 61.111 5.66 5.66 0.00 6.09
377 380 3.188786 CGTAGCTCCCACTTGCGC 61.189 66.667 0.00 0.00 0.00 6.09
378 381 2.094659 CACGTAGCTCCCACTTGCG 61.095 63.158 0.00 0.00 0.00 4.85
379 382 2.391389 GCACGTAGCTCCCACTTGC 61.391 63.158 1.36 1.36 41.15 4.01
380 383 1.005037 TGCACGTAGCTCCCACTTG 60.005 57.895 10.54 0.00 45.94 3.16
381 384 1.004918 GTGCACGTAGCTCCCACTT 60.005 57.895 0.00 0.00 45.94 3.16
382 385 2.657237 GTGCACGTAGCTCCCACT 59.343 61.111 0.00 0.00 45.94 4.00
393 396 1.514678 TAAAGGCAGCTTGGTGCACG 61.515 55.000 23.23 0.00 45.93 5.34
402 405 3.955471 TGCTATGTTTCTAAAGGCAGCT 58.045 40.909 0.00 0.00 0.00 4.24
452 457 4.586001 TGGTCTTAGGACTTAAACTCACGT 59.414 41.667 4.85 0.00 41.82 4.49
455 460 6.464222 CATGTGGTCTTAGGACTTAAACTCA 58.536 40.000 4.85 0.00 41.82 3.41
457 462 5.246307 GCATGTGGTCTTAGGACTTAAACT 58.754 41.667 4.85 0.00 41.82 2.66
458 463 4.395231 GGCATGTGGTCTTAGGACTTAAAC 59.605 45.833 4.85 0.36 41.82 2.01
461 466 3.178046 TGGCATGTGGTCTTAGGACTTA 58.822 45.455 4.85 0.00 41.82 2.24
462 467 1.985159 TGGCATGTGGTCTTAGGACTT 59.015 47.619 4.85 0.00 41.82 3.01
463 468 1.556911 CTGGCATGTGGTCTTAGGACT 59.443 52.381 4.85 0.00 41.82 3.85
472 477 0.035881 CTGACTCACTGGCATGTGGT 59.964 55.000 14.28 11.56 38.40 4.16
481 486 4.861462 GTGATATGTGTCACTGACTCACTG 59.139 45.833 14.59 0.00 43.96 3.66
482 487 5.065704 GTGATATGTGTCACTGACTCACT 57.934 43.478 14.59 6.89 43.96 3.41
520 525 5.854431 TTCAGCTTTTGGTTCAACAAAAC 57.146 34.783 0.00 0.00 43.26 2.43
561 567 4.194640 CACCCTTGAGAACGAATGATCAT 58.805 43.478 1.18 1.18 0.00 2.45
563 569 2.939103 CCACCCTTGAGAACGAATGATC 59.061 50.000 0.00 0.00 0.00 2.92
566 572 2.076863 GTCCACCCTTGAGAACGAATG 58.923 52.381 0.00 0.00 0.00 2.67
652 658 8.938801 TCCATATGCATATTTCACTTACCATT 57.061 30.769 16.71 0.00 0.00 3.16
761 770 7.912250 CGCTTATGCTTTGATTAGATTTCAAGT 59.088 33.333 0.00 0.00 34.76 3.16
801 810 5.007234 CAGTCACGTGGTCAAACTATTCAAA 59.993 40.000 17.00 0.00 0.00 2.69
819 828 3.887621 TGATAGTAAGTGGGCAGTCAC 57.112 47.619 0.00 0.00 37.89 3.67
846 855 0.383949 TTCTTGGCGTTTTGGAGTGC 59.616 50.000 0.00 0.00 0.00 4.40
849 858 6.677781 TTCTATATTCTTGGCGTTTTGGAG 57.322 37.500 0.00 0.00 0.00 3.86
992 1001 0.456824 CTGCTGCTGCTTGCTGAATG 60.457 55.000 17.00 2.49 42.27 2.67
1041 1056 1.228521 CCCCATGGACACAGCAACA 60.229 57.895 15.22 0.00 0.00 3.33
1049 1064 1.770658 CTAAGCAGATCCCCATGGACA 59.229 52.381 15.22 0.00 45.58 4.02
1177 1192 4.431131 CCCAATGAGCGGTGGCCT 62.431 66.667 3.32 0.00 41.24 5.19
1191 1206 0.531974 GTTGACGAAGCACAGTCCCA 60.532 55.000 0.00 0.00 36.61 4.37
1236 1251 2.698803 AGCGCATATGACACTTGTTCA 58.301 42.857 11.47 0.00 0.00 3.18
1375 1390 2.100584 AGGAACAGAGACGATCAGCATC 59.899 50.000 0.00 0.00 0.00 3.91
1539 1610 8.665685 TGAAGAAACTACTCAAAGTTTGACTTC 58.334 33.333 23.12 23.12 46.92 3.01
1662 1762 6.915544 ATTGCACTATGAGTAGATTGTGTG 57.084 37.500 0.00 0.00 33.29 3.82
1663 1763 7.492669 GTGTATTGCACTATGAGTAGATTGTGT 59.507 37.037 0.00 0.00 44.41 3.72
1664 1764 7.845483 GTGTATTGCACTATGAGTAGATTGTG 58.155 38.462 0.00 0.00 44.41 3.33
1680 1780 3.070476 TGGAGATTGCTGTGTATTGCA 57.930 42.857 0.00 0.00 37.42 4.08
1681 1781 4.096833 TGAATGGAGATTGCTGTGTATTGC 59.903 41.667 0.00 0.00 0.00 3.56
1682 1782 5.587443 TCTGAATGGAGATTGCTGTGTATTG 59.413 40.000 0.00 0.00 0.00 1.90
1683 1783 5.748402 TCTGAATGGAGATTGCTGTGTATT 58.252 37.500 0.00 0.00 0.00 1.89
1684 1784 5.363562 TCTGAATGGAGATTGCTGTGTAT 57.636 39.130 0.00 0.00 0.00 2.29
1685 1785 4.824479 TCTGAATGGAGATTGCTGTGTA 57.176 40.909 0.00 0.00 0.00 2.90
1686 1786 3.708403 TCTGAATGGAGATTGCTGTGT 57.292 42.857 0.00 0.00 0.00 3.72
1687 1787 5.238868 CCTATTCTGAATGGAGATTGCTGTG 59.761 44.000 14.47 0.00 0.00 3.66
1688 1788 5.131642 TCCTATTCTGAATGGAGATTGCTGT 59.868 40.000 14.47 0.00 0.00 4.40
1689 1789 5.618236 TCCTATTCTGAATGGAGATTGCTG 58.382 41.667 14.47 0.00 0.00 4.41
1774 1874 2.723273 GCAACCCAACTAGCCTGTATT 58.277 47.619 0.00 0.00 0.00 1.89
1795 1895 5.715434 TTTCTTGTAGGGGTAAAACATGC 57.285 39.130 0.00 0.00 0.00 4.06
1864 1964 6.892658 TGTGCTCATAGGCTCTTTTAAAAA 57.107 33.333 1.66 0.00 0.00 1.94
1865 1965 6.892658 TTGTGCTCATAGGCTCTTTTAAAA 57.107 33.333 0.00 0.00 0.00 1.52
1866 1966 7.466746 AATTGTGCTCATAGGCTCTTTTAAA 57.533 32.000 0.00 0.00 0.00 1.52
1867 1967 7.466746 AAATTGTGCTCATAGGCTCTTTTAA 57.533 32.000 0.00 0.00 0.00 1.52
1868 1968 7.466746 AAAATTGTGCTCATAGGCTCTTTTA 57.533 32.000 0.00 0.00 0.00 1.52
2309 2434 2.360600 TACATGCACCGGGTTGCC 60.361 61.111 13.95 1.69 42.25 4.52
2310 2435 3.051392 GCTACATGCACCGGGTTGC 62.051 63.158 6.32 8.50 43.31 4.17
2311 2436 1.369091 GAGCTACATGCACCGGGTTG 61.369 60.000 6.32 0.00 45.94 3.77
2312 2437 1.078426 GAGCTACATGCACCGGGTT 60.078 57.895 6.32 0.00 45.94 4.11
2314 2439 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
2341 2466 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
2348 2473 1.859841 AAATGGTCGGACCCTTCCCC 61.860 60.000 23.81 0.00 38.99 4.81
2349 2474 0.039180 AAAATGGTCGGACCCTTCCC 59.961 55.000 23.81 0.00 38.99 3.97
2350 2475 1.173913 CAAAATGGTCGGACCCTTCC 58.826 55.000 23.81 0.00 37.50 3.46
2351 2476 1.173913 CCAAAATGGTCGGACCCTTC 58.826 55.000 23.81 0.00 37.50 3.46
2352 2477 0.251608 CCCAAAATGGTCGGACCCTT 60.252 55.000 23.81 17.44 37.50 3.95
2353 2478 1.382629 CCCAAAATGGTCGGACCCT 59.617 57.895 23.81 12.03 37.50 4.34
2354 2479 0.963856 GACCCAAAATGGTCGGACCC 60.964 60.000 23.81 7.15 44.98 4.46
2355 2480 2.563297 GACCCAAAATGGTCGGACC 58.437 57.895 20.36 20.36 44.98 4.46
2361 2486 3.754850 GCGTACTAAAGACCCAAAATGGT 59.245 43.478 0.00 0.00 42.79 3.55
2362 2487 3.754323 TGCGTACTAAAGACCCAAAATGG 59.246 43.478 0.00 0.00 37.25 3.16
2363 2488 4.693566 TCTGCGTACTAAAGACCCAAAATG 59.306 41.667 0.00 0.00 0.00 2.32
2364 2489 4.901868 TCTGCGTACTAAAGACCCAAAAT 58.098 39.130 0.00 0.00 0.00 1.82
2365 2490 4.312443 CTCTGCGTACTAAAGACCCAAAA 58.688 43.478 0.00 0.00 0.00 2.44
2366 2491 3.863400 GCTCTGCGTACTAAAGACCCAAA 60.863 47.826 0.00 0.00 0.00 3.28
2367 2492 2.353406 GCTCTGCGTACTAAAGACCCAA 60.353 50.000 0.00 0.00 0.00 4.12
2368 2493 1.203994 GCTCTGCGTACTAAAGACCCA 59.796 52.381 0.00 0.00 0.00 4.51
2369 2494 1.203994 TGCTCTGCGTACTAAAGACCC 59.796 52.381 0.00 0.00 0.00 4.46
2370 2495 2.649331 TGCTCTGCGTACTAAAGACC 57.351 50.000 0.00 0.00 0.00 3.85
2371 2496 2.924290 CCTTGCTCTGCGTACTAAAGAC 59.076 50.000 0.00 0.00 0.00 3.01
2372 2497 2.674177 GCCTTGCTCTGCGTACTAAAGA 60.674 50.000 0.00 0.00 0.00 2.52
2373 2498 1.661112 GCCTTGCTCTGCGTACTAAAG 59.339 52.381 0.00 0.00 0.00 1.85
2374 2499 1.275291 AGCCTTGCTCTGCGTACTAAA 59.725 47.619 0.00 0.00 30.62 1.85
2375 2500 0.895530 AGCCTTGCTCTGCGTACTAA 59.104 50.000 0.00 0.00 30.62 2.24
2376 2501 0.895530 AAGCCTTGCTCTGCGTACTA 59.104 50.000 0.00 0.00 38.25 1.82
2377 2502 0.035458 AAAGCCTTGCTCTGCGTACT 59.965 50.000 0.00 0.00 38.25 2.73
2378 2503 0.444260 GAAAGCCTTGCTCTGCGTAC 59.556 55.000 0.00 0.00 38.25 3.67
2379 2504 0.034756 TGAAAGCCTTGCTCTGCGTA 59.965 50.000 0.00 0.00 38.25 4.42
2380 2505 1.227943 TGAAAGCCTTGCTCTGCGT 60.228 52.632 0.00 0.00 38.25 5.24
2381 2506 1.208614 GTGAAAGCCTTGCTCTGCG 59.791 57.895 0.00 0.00 38.25 5.18
2382 2507 1.813513 TAGTGAAAGCCTTGCTCTGC 58.186 50.000 0.00 0.00 38.25 4.26
2383 2508 4.836125 TTTTAGTGAAAGCCTTGCTCTG 57.164 40.909 0.00 0.00 38.25 3.35
2384 2509 4.889995 AGTTTTTAGTGAAAGCCTTGCTCT 59.110 37.500 0.00 0.00 38.25 4.09
2503 2640 8.341892 AGAAATAGGAAGAATGAAAGAACCAC 57.658 34.615 0.00 0.00 0.00 4.16
2913 3069 7.526142 AAGTTATCTGTGTACTTGAGACTCA 57.474 36.000 0.00 0.00 31.31 3.41
2955 3111 7.121168 CGGTACCAATATCTATTTCAATGCCAT 59.879 37.037 13.54 0.00 0.00 4.40
3170 3326 5.423015 TCAGCTGACCATATTCTGAACTTC 58.577 41.667 13.74 0.00 31.62 3.01
3267 3423 6.954487 TCTGCATGCATCATAAAAGAGAAT 57.046 33.333 22.97 0.00 0.00 2.40
3439 3595 0.991146 TGGGGTTCTTGCAGAGCATA 59.009 50.000 0.00 0.00 38.76 3.14
3747 3934 5.918608 ACAATACAGGGTATGCTTCTACAG 58.081 41.667 0.00 0.00 0.00 2.74
3816 4007 3.749088 TGGGAAAGTGCATAAACTACGTG 59.251 43.478 0.00 0.00 0.00 4.49
4041 4237 6.648725 GCCATTCTGGAGACTATATTTCTGTC 59.351 42.308 0.00 0.00 40.96 3.51
4184 4383 4.474303 TTTCATTCTCCCCATGGCATAT 57.526 40.909 6.09 0.00 0.00 1.78
4386 4585 3.371487 CCTGTGCCTGACATAACCCAATA 60.371 47.826 0.00 0.00 32.74 1.90
4514 4715 8.931568 ACGGAGGGAGTACTTTATTTGTAATAT 58.068 33.333 0.00 0.00 0.00 1.28
4531 4733 1.218316 CTTTTCCGGACGGAGGGAG 59.782 63.158 13.64 9.15 46.06 4.30
4532 4734 2.951101 GCTTTTCCGGACGGAGGGA 61.951 63.158 13.64 1.83 46.06 4.20
4533 4735 2.436115 GCTTTTCCGGACGGAGGG 60.436 66.667 13.64 8.97 46.06 4.30
4534 4736 1.003718 AAGCTTTTCCGGACGGAGG 60.004 57.895 13.64 9.30 46.06 4.30
4535 4737 0.602905 ACAAGCTTTTCCGGACGGAG 60.603 55.000 13.64 3.27 46.06 4.63
4536 4738 0.601841 GACAAGCTTTTCCGGACGGA 60.602 55.000 1.83 9.76 43.52 4.69
4537 4739 1.574702 GGACAAGCTTTTCCGGACGG 61.575 60.000 15.65 3.96 0.00 4.79
4538 4740 1.574702 GGGACAAGCTTTTCCGGACG 61.575 60.000 22.30 0.00 32.00 4.79
4539 4741 0.536460 TGGGACAAGCTTTTCCGGAC 60.536 55.000 22.30 11.43 31.92 4.79
4540 4742 1.840598 TGGGACAAGCTTTTCCGGA 59.159 52.632 22.30 10.91 31.92 5.14
4541 4743 4.492604 TGGGACAAGCTTTTCCGG 57.507 55.556 22.30 0.00 31.92 5.14
4550 4752 4.249028 TTGAGGAACAAGCTTGGGACAAG 61.249 47.826 29.18 3.71 37.48 3.16
4551 4753 2.357673 TTGAGGAACAAGCTTGGGACAA 60.358 45.455 29.18 21.59 37.48 3.18
4552 4754 0.843309 TGAGGAACAAGCTTGGGACA 59.157 50.000 29.18 17.71 0.00 4.02
4553 4755 1.981256 TTGAGGAACAAGCTTGGGAC 58.019 50.000 29.18 17.88 34.20 4.46
4554 4756 2.746279 TTTGAGGAACAAGCTTGGGA 57.254 45.000 29.18 4.51 39.77 4.37
4555 4757 2.028748 CCATTTGAGGAACAAGCTTGGG 60.029 50.000 29.18 13.19 39.77 4.12
4556 4758 2.892852 TCCATTTGAGGAACAAGCTTGG 59.107 45.455 29.18 12.28 39.77 3.61
4557 4759 4.021719 ACATCCATTTGAGGAACAAGCTTG 60.022 41.667 24.84 24.84 41.92 4.01
4558 4760 4.154942 ACATCCATTTGAGGAACAAGCTT 58.845 39.130 0.00 0.00 41.92 3.74
4559 4761 3.771216 ACATCCATTTGAGGAACAAGCT 58.229 40.909 0.00 0.00 41.92 3.74
4560 4762 5.591877 AGATACATCCATTTGAGGAACAAGC 59.408 40.000 0.00 0.00 41.92 4.01
4561 4763 7.041508 GCTAGATACATCCATTTGAGGAACAAG 60.042 40.741 0.00 0.00 41.92 3.16
4562 4764 6.767902 GCTAGATACATCCATTTGAGGAACAA 59.232 38.462 0.00 0.00 41.92 2.83
4563 4765 6.126796 TGCTAGATACATCCATTTGAGGAACA 60.127 38.462 0.00 0.00 41.92 3.18
4564 4766 6.203723 GTGCTAGATACATCCATTTGAGGAAC 59.796 42.308 0.00 0.00 41.92 3.62
4565 4767 6.100279 AGTGCTAGATACATCCATTTGAGGAA 59.900 38.462 0.00 0.00 41.92 3.36
4566 4768 5.604231 AGTGCTAGATACATCCATTTGAGGA 59.396 40.000 0.00 0.00 43.01 3.71
4567 4769 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
4568 4770 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
4569 4771 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
4570 4772 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
4571 4773 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
4572 4774 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
4573 4775 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
4574 4776 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
4575 4777 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
4587 4789 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
4588 4790 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
4589 4791 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
4590 4792 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
4591 4793 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
4592 4794 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
4593 4795 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
4594 4796 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
4595 4797 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
4596 4798 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
4597 4799 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
4598 4800 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
4599 4801 5.247110 TCTCCCTCAAATGGATGTATCTAGC 59.753 44.000 0.00 0.00 0.00 3.42
4600 4802 6.924913 TCTCCCTCAAATGGATGTATCTAG 57.075 41.667 0.00 0.00 0.00 2.43
4601 4803 6.846505 ACTTCTCCCTCAAATGGATGTATCTA 59.153 38.462 0.00 0.00 0.00 1.98
4602 4804 5.669447 ACTTCTCCCTCAAATGGATGTATCT 59.331 40.000 0.00 0.00 0.00 1.98
4603 4805 5.934781 ACTTCTCCCTCAAATGGATGTATC 58.065 41.667 0.00 0.00 0.00 2.24
4604 4806 5.983333 ACTTCTCCCTCAAATGGATGTAT 57.017 39.130 0.00 0.00 0.00 2.29
4605 4807 5.779241 AACTTCTCCCTCAAATGGATGTA 57.221 39.130 0.00 0.00 0.00 2.29
4606 4808 4.664688 AACTTCTCCCTCAAATGGATGT 57.335 40.909 0.00 0.00 0.00 3.06
4607 4809 5.990120 AAAACTTCTCCCTCAAATGGATG 57.010 39.130 0.00 0.00 0.00 3.51
4627 4829 1.547372 CTACTCCCTCCGTCCGAAAAA 59.453 52.381 0.00 0.00 0.00 1.94
4628 4830 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
4629 4831 0.682209 CCTACTCCCTCCGTCCGAAA 60.682 60.000 0.00 0.00 0.00 3.46
4630 4832 1.077212 CCTACTCCCTCCGTCCGAA 60.077 63.158 0.00 0.00 0.00 4.30
4631 4833 1.565390 TTCCTACTCCCTCCGTCCGA 61.565 60.000 0.00 0.00 0.00 4.55
4632 4834 0.682209 TTTCCTACTCCCTCCGTCCG 60.682 60.000 0.00 0.00 0.00 4.79
4633 4835 0.822811 GTTTCCTACTCCCTCCGTCC 59.177 60.000 0.00 0.00 0.00 4.79
4634 4836 1.553706 TGTTTCCTACTCCCTCCGTC 58.446 55.000 0.00 0.00 0.00 4.79
4635 4837 1.622312 GTTGTTTCCTACTCCCTCCGT 59.378 52.381 0.00 0.00 0.00 4.69
4636 4838 1.621814 TGTTGTTTCCTACTCCCTCCG 59.378 52.381 0.00 0.00 0.00 4.63
4637 4839 3.610911 CATGTTGTTTCCTACTCCCTCC 58.389 50.000 0.00 0.00 0.00 4.30
4638 4840 3.610911 CCATGTTGTTTCCTACTCCCTC 58.389 50.000 0.00 0.00 0.00 4.30
4639 4841 2.290960 GCCATGTTGTTTCCTACTCCCT 60.291 50.000 0.00 0.00 0.00 4.20
4640 4842 2.092323 GCCATGTTGTTTCCTACTCCC 58.908 52.381 0.00 0.00 0.00 4.30
4641 4843 2.488153 GTGCCATGTTGTTTCCTACTCC 59.512 50.000 0.00 0.00 0.00 3.85
4642 4844 3.412386 AGTGCCATGTTGTTTCCTACTC 58.588 45.455 0.00 0.00 0.00 2.59
4643 4845 3.508845 AGTGCCATGTTGTTTCCTACT 57.491 42.857 0.00 0.00 0.00 2.57
4644 4846 5.897377 ATTAGTGCCATGTTGTTTCCTAC 57.103 39.130 0.00 0.00 0.00 3.18
4645 4847 6.266168 CAATTAGTGCCATGTTGTTTCCTA 57.734 37.500 0.00 0.00 0.00 2.94
4646 4848 5.138125 CAATTAGTGCCATGTTGTTTCCT 57.862 39.130 0.00 0.00 0.00 3.36
4660 4862 5.503662 TGCACATCCATTAGCAATTAGTG 57.496 39.130 0.00 0.00 33.48 2.74
4682 4885 5.680619 TGTCAGTTGTGGTACTTTCTGAAT 58.319 37.500 0.00 0.00 34.49 2.57
4695 4898 0.587768 TGCGCTTGATGTCAGTTGTG 59.412 50.000 9.73 0.00 0.00 3.33
4696 4899 1.527034 ATGCGCTTGATGTCAGTTGT 58.473 45.000 9.73 0.00 0.00 3.32
4736 4939 5.291905 ACTAACTTTAACACAGGCAGACT 57.708 39.130 0.00 0.00 0.00 3.24
4752 4955 8.182227 GCTTGTGTTTTTACTTGAGAACTAACT 58.818 33.333 0.00 0.00 0.00 2.24
4753 4956 7.966204 TGCTTGTGTTTTTACTTGAGAACTAAC 59.034 33.333 0.00 0.00 0.00 2.34
4755 4958 7.618502 TGCTTGTGTTTTTACTTGAGAACTA 57.381 32.000 0.00 0.00 0.00 2.24
4797 5001 7.448161 TGAAAATTGCCATCTGAACTCTAAAGA 59.552 33.333 0.00 0.00 0.00 2.52
4839 5043 1.528824 CCGCCTGATCATGGGAAGT 59.471 57.895 15.21 0.00 0.00 3.01
4859 5063 1.796017 TCCCCAAGCATATACGTGGA 58.204 50.000 9.30 0.00 41.18 4.02
4922 5126 7.040478 TCCAGTTTGAACCTGAAGAAATGTATG 60.040 37.037 0.00 0.00 0.00 2.39
5006 5210 4.149598 GGGGGTACACAAAAAGATGAAGT 58.850 43.478 0.00 0.00 0.00 3.01
5324 5550 9.890629 AGATCAGAGTTGCTTATATACAACAAA 57.109 29.630 16.41 4.11 46.79 2.83
5380 5606 6.478344 CCACTCTAGCTGAATAAACATCTGTC 59.522 42.308 0.00 0.00 0.00 3.51
5516 5742 7.120579 TCGTGGATTAAATGTGTTATTCTTGCT 59.879 33.333 0.00 0.00 0.00 3.91
5517 5743 7.247728 TCGTGGATTAAATGTGTTATTCTTGC 58.752 34.615 0.00 0.00 0.00 4.01
5554 5780 5.814705 CCTGTCCTTCTATGTGAACTCATTC 59.185 44.000 0.00 0.00 35.18 2.67
5577 5803 0.988063 AAAGGTGCCCTCTCTTCTCC 59.012 55.000 0.00 0.00 30.89 3.71
5617 5843 2.325583 TTGGTGATATTGTCGAGGCC 57.674 50.000 0.00 0.00 0.00 5.19
5623 5849 7.830739 AGAAGGTCAAATTTGGTGATATTGTC 58.169 34.615 17.90 4.41 0.00 3.18
5726 5952 9.042008 GGATAATAATGTATCTTGTGTCGTTGT 57.958 33.333 0.00 0.00 32.09 3.32
5748 5974 7.354025 CGTGGCAACGTATAATAAATGGATA 57.646 36.000 5.16 0.00 44.93 2.59
5769 5995 2.069273 GAACCTCCACATTCACTCGTG 58.931 52.381 0.00 0.00 0.00 4.35
5789 6015 1.490574 AGTAGGCACCTGCTTAGGAG 58.509 55.000 0.88 0.00 41.70 3.69
5792 6018 2.761208 AGTGTAGTAGGCACCTGCTTAG 59.239 50.000 12.75 0.00 39.61 2.18
5852 6078 6.047870 AGTATCTTGCTTCAAGTGATGCTAG 58.952 40.000 18.17 18.17 43.69 3.42
5918 6148 3.435327 CGTGTAGCTTTTTGCATCTACCA 59.565 43.478 0.00 0.00 45.94 3.25
5920 6150 4.921470 TCGTGTAGCTTTTTGCATCTAC 57.079 40.909 0.00 0.00 45.94 2.59
5922 6152 3.375299 GGATCGTGTAGCTTTTTGCATCT 59.625 43.478 0.00 0.00 45.94 2.90
5949 6179 1.115326 GGCCACTCCTGGTTTGCTTT 61.115 55.000 0.00 0.00 40.17 3.51
5963 6193 2.890945 AGTTGTCTAACCATTTGGCCAC 59.109 45.455 3.88 0.00 37.52 5.01
5964 6194 3.153919 GAGTTGTCTAACCATTTGGCCA 58.846 45.455 0.00 0.00 37.52 5.36
5966 6196 3.821033 AGTGAGTTGTCTAACCATTTGGC 59.179 43.478 0.00 0.00 37.52 4.52
5967 6197 5.765182 AGAAGTGAGTTGTCTAACCATTTGG 59.235 40.000 0.00 0.00 37.52 3.28
6059 6289 4.288887 GGTAAGAAAAAGAGGAAGAGGGGA 59.711 45.833 0.00 0.00 0.00 4.81
6064 6294 5.640158 TGGTGGTAAGAAAAAGAGGAAGA 57.360 39.130 0.00 0.00 0.00 2.87
6074 6304 1.349688 AGTGCCGATGGTGGTAAGAAA 59.650 47.619 0.00 0.00 0.00 2.52
6080 6310 4.760047 GCGAGTGCCGATGGTGGT 62.760 66.667 0.00 0.00 41.76 4.16
6109 6339 4.729918 CAGAGGGTGCACCAGGGC 62.730 72.222 35.78 19.27 43.89 5.19
6111 6341 0.321653 GTAACAGAGGGTGCACCAGG 60.322 60.000 35.78 22.87 43.89 4.45
6113 6343 0.766674 AGGTAACAGAGGGTGCACCA 60.767 55.000 35.78 12.18 40.53 4.17
6127 6357 2.124901 CCGCGGATGCCAAGGTAA 60.125 61.111 24.07 0.00 38.08 2.85
6156 6386 4.881273 TGTGCAGAAAACTAAGAAGCAGAA 59.119 37.500 0.00 0.00 0.00 3.02
6159 6389 5.762045 GATTGTGCAGAAAACTAAGAAGCA 58.238 37.500 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.