Multiple sequence alignment - TraesCS7D01G058900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G058900 chr7D 100.000 3406 0 0 1 3406 31946639 31950044 0.000000e+00 6290.0
1 TraesCS7D01G058900 chr7D 96.897 419 13 0 385 803 109950232 109949814 0.000000e+00 702.0
2 TraesCS7D01G058900 chr7A 89.490 2217 166 35 870 3040 32024515 32026710 0.000000e+00 2741.0
3 TraesCS7D01G058900 chr7A 80.946 698 73 32 325 983 32013234 32013910 6.560000e-137 497.0
4 TraesCS7D01G058900 chr7A 98.031 254 5 0 3153 3406 32026707 32026960 3.120000e-120 442.0
5 TraesCS7D01G058900 chr7A 94.382 178 8 2 3230 3406 32302702 32302878 4.330000e-69 272.0
6 TraesCS7D01G058900 chr4A 91.198 1636 118 15 1428 3040 696006055 696004423 0.000000e+00 2200.0
7 TraesCS7D01G058900 chr4A 87.147 1486 113 28 5 1428 696007495 696006026 0.000000e+00 1615.0
8 TraesCS7D01G058900 chr4A 94.141 256 12 3 3153 3406 696004426 696004172 1.480000e-103 387.0
9 TraesCS7D01G058900 chr2D 98.734 790 10 0 14 803 477991634 477990845 0.000000e+00 1404.0
10 TraesCS7D01G058900 chr2D 95.431 197 8 1 607 803 477991687 477991882 2.550000e-81 313.0
11 TraesCS7D01G058900 chr2D 95.604 182 8 0 622 803 73455013 73454832 3.320000e-75 292.0
12 TraesCS7D01G058900 chr2D 93.717 191 8 4 614 802 73456025 73456213 2.000000e-72 283.0
13 TraesCS7D01G058900 chrUn 100.000 415 0 0 14 428 477296593 477296179 0.000000e+00 767.0
14 TraesCS7D01G058900 chrUn 88.158 228 24 1 1895 2119 235799094 235799321 5.600000e-68 268.0
15 TraesCS7D01G058900 chr6D 96.984 431 13 0 373 803 276588330 276587900 0.000000e+00 725.0
16 TraesCS7D01G058900 chr6D 96.316 190 7 0 614 803 415403042 415403231 2.550000e-81 313.0
17 TraesCS7D01G058900 chr6D 85.784 204 21 4 1892 2095 298139516 298139321 3.440000e-50 209.0
18 TraesCS7D01G058900 chr6D 81.006 179 30 2 1642 1820 298139725 298139551 4.580000e-29 139.0
19 TraesCS7D01G058900 chr5B 80.000 490 61 22 160 628 460195509 460195982 9.110000e-86 327.0
20 TraesCS7D01G058900 chr7B 84.286 350 36 10 315 648 630109665 630110011 1.180000e-84 324.0
21 TraesCS7D01G058900 chr1B 84.706 340 33 9 325 648 144274438 144274774 4.240000e-84 322.0
22 TraesCS7D01G058900 chr1B 78.776 490 67 22 160 628 637313058 637313531 9.240000e-76 294.0
23 TraesCS7D01G058900 chr1B 78.411 491 68 20 160 628 27092117 27091643 5.560000e-73 285.0
24 TraesCS7D01G058900 chr1B 94.531 128 5 2 3036 3161 8855985 8855858 2.680000e-46 196.0
25 TraesCS7D01G058900 chr1B 81.006 179 30 2 1642 1820 253825292 253825118 4.580000e-29 139.0
26 TraesCS7D01G058900 chr4B 78.615 491 66 23 160 628 116355537 116356010 4.300000e-74 289.0
27 TraesCS7D01G058900 chr6B 83.333 324 29 15 325 628 180391251 180390933 3.350000e-70 276.0
28 TraesCS7D01G058900 chr6A 85.532 235 30 3 1889 2119 48549945 48550179 3.400000e-60 243.0
29 TraesCS7D01G058900 chr6A 97.458 118 3 0 3037 3154 277889684 277889801 5.760000e-48 202.0
30 TraesCS7D01G058900 chr4D 98.305 118 2 0 3037 3154 494876029 494875912 1.240000e-49 207.0
31 TraesCS7D01G058900 chr4D 96.667 120 4 0 3036 3155 55352559 55352440 2.070000e-47 200.0
32 TraesCS7D01G058900 chr3D 94.656 131 7 0 3037 3167 107671080 107670950 1.600000e-48 204.0
33 TraesCS7D01G058900 chr2A 97.458 118 3 0 3037 3154 606523804 606523687 5.760000e-48 202.0
34 TraesCS7D01G058900 chr1D 95.312 128 5 1 3037 3164 28576651 28576525 5.760000e-48 202.0
35 TraesCS7D01G058900 chr1A 95.902 122 5 0 3035 3156 208212652 208212531 7.460000e-47 198.0
36 TraesCS7D01G058900 chr1A 96.610 118 4 0 3037 3154 498452785 498452668 2.680000e-46 196.0
37 TraesCS7D01G058900 chr2B 81.564 179 25 3 1642 1820 13184171 13184341 1.270000e-29 141.0
38 TraesCS7D01G058900 chr2B 85.714 119 14 2 1889 2004 745508314 745508432 4.620000e-24 122.0
39 TraesCS7D01G058900 chr2B 86.076 79 11 0 2040 2118 745508434 745508512 6.060000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G058900 chr7D 31946639 31950044 3405 False 6290.000000 6290 100.000000 1 3406 1 chr7D.!!$F1 3405
1 TraesCS7D01G058900 chr7A 32024515 32026960 2445 False 1591.500000 2741 93.760500 870 3406 2 chr7A.!!$F3 2536
2 TraesCS7D01G058900 chr7A 32013234 32013910 676 False 497.000000 497 80.946000 325 983 1 chr7A.!!$F1 658
3 TraesCS7D01G058900 chr4A 696004172 696007495 3323 True 1400.666667 2200 90.828667 5 3406 3 chr4A.!!$R1 3401
4 TraesCS7D01G058900 chr2D 477990845 477991634 789 True 1404.000000 1404 98.734000 14 803 1 chr2D.!!$R2 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 933 0.248289 GCCATTTCTGCTGCCACAAT 59.752 50.0 0.0 0.0 0.00 2.71 F
1205 1313 0.107945 ATCCAGAAGAAGCAGGACGC 60.108 55.0 0.0 0.0 42.91 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1835 0.239347 CGAGCAAAGCAAACCAGGAG 59.761 55.0 0.00 0.00 0.00 3.69 R
3121 3265 0.039165 CGGAAAAGCTTGTCCCAAGC 60.039 55.0 26.94 18.69 43.31 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
628 681 1.219393 CTTCCTGAAGTCCGCCTCC 59.781 63.158 0.00 0.00 33.87 4.30
777 843 2.683933 GACGGGGAGGAGAGGCAA 60.684 66.667 0.00 0.00 0.00 4.52
778 844 3.003763 ACGGGGAGGAGAGGCAAC 61.004 66.667 0.00 0.00 0.00 4.17
779 845 4.148825 CGGGGAGGAGAGGCAACG 62.149 72.222 0.00 0.00 46.39 4.10
854 929 3.063704 CGGCCATTTCTGCTGCCA 61.064 61.111 2.24 0.00 44.22 4.92
856 931 2.277591 GGCCATTTCTGCTGCCACA 61.278 57.895 0.00 0.00 43.46 4.17
857 932 1.667151 GCCATTTCTGCTGCCACAA 59.333 52.632 0.00 0.00 0.00 3.33
858 933 0.248289 GCCATTTCTGCTGCCACAAT 59.752 50.000 0.00 0.00 0.00 2.71
923 1005 4.081050 GGCCGGATAAAGCCCATC 57.919 61.111 5.05 0.00 43.76 3.51
931 1021 1.065551 GATAAAGCCCATCGTGCCAAC 59.934 52.381 0.00 0.00 0.00 3.77
932 1022 0.250945 TAAAGCCCATCGTGCCAACA 60.251 50.000 0.00 0.00 0.00 3.33
937 1028 1.745115 CCATCGTGCCAACATCGGT 60.745 57.895 0.00 0.00 0.00 4.69
941 1032 2.390599 CGTGCCAACATCGGTCCAG 61.391 63.158 0.00 0.00 0.00 3.86
970 1061 4.452733 GGCGGCTGTAACCTCGCT 62.453 66.667 0.00 0.00 46.31 4.93
984 1078 1.686052 CCTCGCTTCCTCTGCTCTAAT 59.314 52.381 0.00 0.00 0.00 1.73
1205 1313 0.107945 ATCCAGAAGAAGCAGGACGC 60.108 55.000 0.00 0.00 42.91 5.19
1207 1315 1.004560 CAGAAGAAGCAGGACGCCA 60.005 57.895 0.00 0.00 44.04 5.69
1239 1350 4.083862 AAGGCCGACGCTTCCTCC 62.084 66.667 0.00 0.00 34.44 4.30
1259 1370 0.992695 GGTGAGCTTTCCTTACCCCT 59.007 55.000 0.00 0.00 42.79 4.79
1260 1371 1.354705 GGTGAGCTTTCCTTACCCCTT 59.645 52.381 0.00 0.00 42.79 3.95
1261 1372 2.225041 GGTGAGCTTTCCTTACCCCTTT 60.225 50.000 0.00 0.00 42.79 3.11
1262 1373 3.009805 GGTGAGCTTTCCTTACCCCTTTA 59.990 47.826 0.00 0.00 42.79 1.85
1322 1434 4.742201 TCTCGCTCGTTGCCCAGC 62.742 66.667 0.00 0.00 38.78 4.85
1393 1505 0.685660 GGCGGGGAAGGATAAGGTAG 59.314 60.000 0.00 0.00 0.00 3.18
1396 1508 2.395619 CGGGGAAGGATAAGGTAGTGT 58.604 52.381 0.00 0.00 0.00 3.55
1397 1509 2.102588 CGGGGAAGGATAAGGTAGTGTG 59.897 54.545 0.00 0.00 0.00 3.82
1405 1520 5.447757 AGGATAAGGTAGTGTGTCCTAGAC 58.552 45.833 0.00 0.00 34.48 2.59
1415 1530 1.937191 TGTCCTAGACACAGGATGCA 58.063 50.000 0.00 0.00 46.34 3.96
1418 1533 2.234908 GTCCTAGACACAGGATGCAACT 59.765 50.000 0.00 0.00 46.34 3.16
1421 1536 1.242076 AGACACAGGATGCAACTTGC 58.758 50.000 5.98 6.82 42.53 4.01
1474 1590 2.839486 TTAGCTTCTGTGGTCTGTGG 57.161 50.000 0.00 0.00 0.00 4.17
1481 1597 1.133823 TCTGTGGTCTGTGGCATTGTT 60.134 47.619 0.00 0.00 0.00 2.83
1482 1598 1.267806 CTGTGGTCTGTGGCATTGTTC 59.732 52.381 0.00 0.00 0.00 3.18
1515 1631 4.341806 TGGTGAATGATTGTGCAGAAAACT 59.658 37.500 0.00 0.00 0.00 2.66
1523 1639 5.299028 TGATTGTGCAGAAAACTAAGAAGCA 59.701 36.000 0.00 0.00 0.00 3.91
1526 1642 4.881273 TGTGCAGAAAACTAAGAAGCAGAA 59.119 37.500 0.00 0.00 0.00 3.02
1555 1671 2.124901 CCGCGGATGCCAAGGTAA 60.125 61.111 24.07 0.00 38.08 2.85
1569 1685 0.766674 AGGTAACAGAGGGTGCACCA 60.767 55.000 35.78 12.18 40.53 4.17
1571 1687 0.321653 GTAACAGAGGGTGCACCAGG 60.322 60.000 35.78 22.87 43.89 4.45
1573 1689 4.729918 CAGAGGGTGCACCAGGGC 62.730 72.222 35.78 19.27 43.89 5.19
1602 1718 4.760047 GCGAGTGCCGATGGTGGT 62.760 66.667 0.00 0.00 41.76 4.16
1608 1724 1.349688 AGTGCCGATGGTGGTAAGAAA 59.650 47.619 0.00 0.00 0.00 2.52
1618 1734 5.640158 TGGTGGTAAGAAAAAGAGGAAGA 57.360 39.130 0.00 0.00 0.00 2.87
1623 1739 4.288887 GGTAAGAAAAAGAGGAAGAGGGGA 59.711 45.833 0.00 0.00 0.00 4.81
1715 1831 5.765182 AGAAGTGAGTTGTCTAACCATTTGG 59.235 40.000 0.00 0.00 37.52 3.28
1716 1832 3.821033 AGTGAGTTGTCTAACCATTTGGC 59.179 43.478 0.00 0.00 37.52 4.52
1718 1834 3.153919 GAGTTGTCTAACCATTTGGCCA 58.846 45.455 0.00 0.00 37.52 5.36
1719 1835 2.890945 AGTTGTCTAACCATTTGGCCAC 59.109 45.455 3.88 0.00 37.52 5.01
1733 1849 1.115326 GGCCACTCCTGGTTTGCTTT 61.115 55.000 0.00 0.00 40.17 3.51
1760 1876 3.375299 GGATCGTGTAGCTTTTTGCATCT 59.625 43.478 0.00 0.00 45.94 2.90
1762 1878 4.921470 TCGTGTAGCTTTTTGCATCTAC 57.079 40.909 0.00 0.00 45.94 2.59
1764 1880 3.435327 CGTGTAGCTTTTTGCATCTACCA 59.565 43.478 0.00 0.00 45.94 3.25
1830 1950 6.047870 AGTATCTTGCTTCAAGTGATGCTAG 58.952 40.000 18.17 18.17 43.69 3.42
1890 2010 2.761208 AGTGTAGTAGGCACCTGCTTAG 59.239 50.000 12.75 0.00 39.61 2.18
1893 2013 1.490574 AGTAGGCACCTGCTTAGGAG 58.509 55.000 0.88 0.00 41.70 3.69
1913 2033 2.069273 GAACCTCCACATTCACTCGTG 58.931 52.381 0.00 0.00 0.00 4.35
1934 2054 7.354025 CGTGGCAACGTATAATAAATGGATA 57.646 36.000 5.16 0.00 44.93 2.59
1956 2076 9.042008 GGATAATAATGTATCTTGTGTCGTTGT 57.958 33.333 0.00 0.00 32.09 3.32
2059 2179 7.830739 AGAAGGTCAAATTTGGTGATATTGTC 58.169 34.615 17.90 4.41 0.00 3.18
2065 2185 2.325583 TTGGTGATATTGTCGAGGCC 57.674 50.000 0.00 0.00 0.00 5.19
2105 2225 0.988063 AAAGGTGCCCTCTCTTCTCC 59.012 55.000 0.00 0.00 30.89 3.71
2128 2248 5.814705 CCTGTCCTTCTATGTGAACTCATTC 59.185 44.000 0.00 0.00 35.18 2.67
2165 2285 7.247728 TCGTGGATTAAATGTGTTATTCTTGC 58.752 34.615 0.00 0.00 0.00 4.01
2166 2286 7.120579 TCGTGGATTAAATGTGTTATTCTTGCT 59.879 33.333 0.00 0.00 0.00 3.91
2302 2422 6.478344 CCACTCTAGCTGAATAAACATCTGTC 59.522 42.308 0.00 0.00 0.00 3.51
2358 2478 9.890629 AGATCAGAGTTGCTTATATACAACAAA 57.109 29.630 16.41 4.11 46.79 2.83
2676 2818 4.149598 GGGGGTACACAAAAAGATGAAGT 58.850 43.478 0.00 0.00 0.00 3.01
2760 2902 7.040478 TCCAGTTTGAACCTGAAGAAATGTATG 60.040 37.037 0.00 0.00 0.00 2.39
2823 2965 1.796017 TCCCCAAGCATATACGTGGA 58.204 50.000 9.30 0.00 41.18 4.02
2843 2985 1.528824 CCGCCTGATCATGGGAAGT 59.471 57.895 15.21 0.00 0.00 3.01
2885 3027 7.448161 TGAAAATTGCCATCTGAACTCTAAAGA 59.552 33.333 0.00 0.00 0.00 2.52
2927 3070 7.618502 TGCTTGTGTTTTTACTTGAGAACTA 57.381 32.000 0.00 0.00 0.00 2.24
2929 3072 7.966204 TGCTTGTGTTTTTACTTGAGAACTAAC 59.034 33.333 0.00 0.00 0.00 2.34
2930 3073 8.182227 GCTTGTGTTTTTACTTGAGAACTAACT 58.818 33.333 0.00 0.00 0.00 2.24
2946 3089 5.291905 ACTAACTTTAACACAGGCAGACT 57.708 39.130 0.00 0.00 0.00 3.24
2986 3129 1.527034 ATGCGCTTGATGTCAGTTGT 58.473 45.000 9.73 0.00 0.00 3.32
2987 3130 0.587768 TGCGCTTGATGTCAGTTGTG 59.412 50.000 9.73 0.00 0.00 3.33
3000 3143 5.680619 TGTCAGTTGTGGTACTTTCTGAAT 58.319 37.500 0.00 0.00 34.49 2.57
3022 3165 5.503662 TGCACATCCATTAGCAATTAGTG 57.496 39.130 0.00 0.00 33.48 2.74
3036 3180 5.138125 CAATTAGTGCCATGTTGTTTCCT 57.862 39.130 0.00 0.00 0.00 3.36
3037 3181 6.266168 CAATTAGTGCCATGTTGTTTCCTA 57.734 37.500 0.00 0.00 0.00 2.94
3038 3182 5.897377 ATTAGTGCCATGTTGTTTCCTAC 57.103 39.130 0.00 0.00 0.00 3.18
3039 3183 3.508845 AGTGCCATGTTGTTTCCTACT 57.491 42.857 0.00 0.00 0.00 2.57
3040 3184 3.412386 AGTGCCATGTTGTTTCCTACTC 58.588 45.455 0.00 0.00 0.00 2.59
3041 3185 2.488153 GTGCCATGTTGTTTCCTACTCC 59.512 50.000 0.00 0.00 0.00 3.85
3042 3186 2.092323 GCCATGTTGTTTCCTACTCCC 58.908 52.381 0.00 0.00 0.00 4.30
3043 3187 2.290960 GCCATGTTGTTTCCTACTCCCT 60.291 50.000 0.00 0.00 0.00 4.20
3044 3188 3.610911 CCATGTTGTTTCCTACTCCCTC 58.389 50.000 0.00 0.00 0.00 4.30
3045 3189 3.610911 CATGTTGTTTCCTACTCCCTCC 58.389 50.000 0.00 0.00 0.00 4.30
3046 3190 1.621814 TGTTGTTTCCTACTCCCTCCG 59.378 52.381 0.00 0.00 0.00 4.63
3047 3191 1.622312 GTTGTTTCCTACTCCCTCCGT 59.378 52.381 0.00 0.00 0.00 4.69
3048 3192 1.553706 TGTTTCCTACTCCCTCCGTC 58.446 55.000 0.00 0.00 0.00 4.79
3049 3193 0.822811 GTTTCCTACTCCCTCCGTCC 59.177 60.000 0.00 0.00 0.00 4.79
3050 3194 0.682209 TTTCCTACTCCCTCCGTCCG 60.682 60.000 0.00 0.00 0.00 4.79
3051 3195 1.565390 TTCCTACTCCCTCCGTCCGA 61.565 60.000 0.00 0.00 0.00 4.55
3052 3196 1.077212 CCTACTCCCTCCGTCCGAA 60.077 63.158 0.00 0.00 0.00 4.30
3053 3197 0.682209 CCTACTCCCTCCGTCCGAAA 60.682 60.000 0.00 0.00 0.00 3.46
3054 3198 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
3055 3199 1.547372 CTACTCCCTCCGTCCGAAAAA 59.453 52.381 0.00 0.00 0.00 1.94
3075 3219 5.990120 AAAACTTCTCCCTCAAATGGATG 57.010 39.130 0.00 0.00 0.00 3.51
3076 3220 4.664688 AACTTCTCCCTCAAATGGATGT 57.335 40.909 0.00 0.00 0.00 3.06
3077 3221 5.779241 AACTTCTCCCTCAAATGGATGTA 57.221 39.130 0.00 0.00 0.00 2.29
3078 3222 5.983333 ACTTCTCCCTCAAATGGATGTAT 57.017 39.130 0.00 0.00 0.00 2.29
3079 3223 5.934781 ACTTCTCCCTCAAATGGATGTATC 58.065 41.667 0.00 0.00 0.00 2.24
3080 3224 5.669447 ACTTCTCCCTCAAATGGATGTATCT 59.331 40.000 0.00 0.00 0.00 1.98
3081 3225 6.846505 ACTTCTCCCTCAAATGGATGTATCTA 59.153 38.462 0.00 0.00 0.00 1.98
3082 3226 6.924913 TCTCCCTCAAATGGATGTATCTAG 57.075 41.667 0.00 0.00 0.00 2.43
3083 3227 5.247110 TCTCCCTCAAATGGATGTATCTAGC 59.753 44.000 0.00 0.00 0.00 3.42
3084 3228 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3085 3229 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
3086 3230 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
3087 3231 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
3088 3232 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
3089 3233 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
3090 3234 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
3091 3235 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
3092 3236 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
3093 3237 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
3094 3238 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
3095 3239 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
3107 3251 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3108 3252 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3109 3253 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
3110 3254 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
3111 3255 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
3112 3256 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
3113 3257 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3114 3258 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
3115 3259 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
3116 3260 5.604231 AGTGCTAGATACATCCATTTGAGGA 59.396 40.000 0.00 0.00 43.01 3.71
3117 3261 6.100279 AGTGCTAGATACATCCATTTGAGGAA 59.900 38.462 0.00 0.00 41.92 3.36
3118 3262 6.203723 GTGCTAGATACATCCATTTGAGGAAC 59.796 42.308 0.00 0.00 41.92 3.62
3119 3263 6.126796 TGCTAGATACATCCATTTGAGGAACA 60.127 38.462 0.00 0.00 41.92 3.18
3120 3264 6.767902 GCTAGATACATCCATTTGAGGAACAA 59.232 38.462 0.00 0.00 41.92 2.83
3121 3265 7.041508 GCTAGATACATCCATTTGAGGAACAAG 60.042 40.741 0.00 0.00 41.92 3.16
3122 3266 5.591877 AGATACATCCATTTGAGGAACAAGC 59.408 40.000 0.00 0.00 41.92 4.01
3123 3267 3.771216 ACATCCATTTGAGGAACAAGCT 58.229 40.909 0.00 0.00 41.92 3.74
3124 3268 4.154942 ACATCCATTTGAGGAACAAGCTT 58.845 39.130 0.00 0.00 41.92 3.74
3125 3269 4.021719 ACATCCATTTGAGGAACAAGCTTG 60.022 41.667 24.84 24.84 41.92 4.01
3126 3270 2.892852 TCCATTTGAGGAACAAGCTTGG 59.107 45.455 29.18 12.28 39.77 3.61
3127 3271 2.028748 CCATTTGAGGAACAAGCTTGGG 60.029 50.000 29.18 13.19 39.77 4.12
3128 3272 2.746279 TTTGAGGAACAAGCTTGGGA 57.254 45.000 29.18 4.51 39.77 4.37
3129 3273 1.981256 TTGAGGAACAAGCTTGGGAC 58.019 50.000 29.18 17.88 34.20 4.46
3130 3274 0.843309 TGAGGAACAAGCTTGGGACA 59.157 50.000 29.18 17.71 0.00 4.02
3131 3275 2.357673 TTGAGGAACAAGCTTGGGACAA 60.358 45.455 29.18 21.59 37.48 3.18
3132 3276 4.249028 TTGAGGAACAAGCTTGGGACAAG 61.249 47.826 29.18 3.71 37.48 3.16
3141 3285 4.492604 TGGGACAAGCTTTTCCGG 57.507 55.556 22.30 0.00 31.92 5.14
3142 3286 1.840598 TGGGACAAGCTTTTCCGGA 59.159 52.632 22.30 10.91 31.92 5.14
3143 3287 0.536460 TGGGACAAGCTTTTCCGGAC 60.536 55.000 22.30 11.43 31.92 4.79
3144 3288 1.574702 GGGACAAGCTTTTCCGGACG 61.575 60.000 22.30 0.00 32.00 4.79
3145 3289 1.574702 GGACAAGCTTTTCCGGACGG 61.575 60.000 15.65 3.96 0.00 4.79
3146 3290 0.601841 GACAAGCTTTTCCGGACGGA 60.602 55.000 1.83 9.76 43.52 4.69
3147 3291 0.602905 ACAAGCTTTTCCGGACGGAG 60.603 55.000 13.64 3.27 46.06 4.63
3148 3292 1.003718 AAGCTTTTCCGGACGGAGG 60.004 57.895 13.64 9.30 46.06 4.30
3149 3293 2.436115 GCTTTTCCGGACGGAGGG 60.436 66.667 13.64 8.97 46.06 4.30
3150 3294 2.951101 GCTTTTCCGGACGGAGGGA 61.951 63.158 13.64 1.83 46.06 4.20
3151 3295 1.218316 CTTTTCCGGACGGAGGGAG 59.782 63.158 13.64 9.15 46.06 4.30
3168 3313 8.931568 ACGGAGGGAGTACTTTATTTGTAATAT 58.068 33.333 0.00 0.00 0.00 1.28
3296 3442 3.371487 CCTGTGCCTGACATAACCCAATA 60.371 47.826 0.00 0.00 32.74 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.106673 CAGTTCCTACATAATCAAAGTCCGT 58.893 40.000 0.00 0.00 0.00 4.69
1 2 6.106673 ACAGTTCCTACATAATCAAAGTCCG 58.893 40.000 0.00 0.00 0.00 4.79
2 3 7.331791 AGACAGTTCCTACATAATCAAAGTCC 58.668 38.462 0.00 0.00 0.00 3.85
3 4 9.522804 CTAGACAGTTCCTACATAATCAAAGTC 57.477 37.037 0.00 0.00 0.00 3.01
854 929 4.778143 GTGCCCGGCGAGGATTGT 62.778 66.667 9.30 0.00 45.00 2.71
912 990 1.102978 GTTGGCACGATGGGCTTTAT 58.897 50.000 0.00 0.00 0.00 1.40
913 991 0.250945 TGTTGGCACGATGGGCTTTA 60.251 50.000 0.00 0.00 0.00 1.85
914 992 0.899717 ATGTTGGCACGATGGGCTTT 60.900 50.000 0.00 0.00 0.00 3.51
923 1005 2.358125 TGGACCGATGTTGGCACG 60.358 61.111 0.00 0.00 0.00 5.34
970 1061 0.385751 CGCGGATTAGAGCAGAGGAA 59.614 55.000 0.00 0.00 0.00 3.36
984 1078 3.028130 CCGATACTGCTACGCGGA 58.972 61.111 12.47 0.00 44.43 5.54
1046 1154 1.382695 TTCCCCGTCATCTCCTCCC 60.383 63.158 0.00 0.00 0.00 4.30
1239 1350 0.392595 GGGGTAAGGAAAGCTCACCG 60.393 60.000 0.00 0.00 0.00 4.94
1338 1450 3.052909 ATCTGCGCCATGCTTCCCT 62.053 57.895 4.18 0.00 46.63 4.20
1353 1465 2.363795 TCCTTCCCCGTCGCATCT 60.364 61.111 0.00 0.00 0.00 2.90
1405 1520 0.592637 TTCGCAAGTTGCATCCTGTG 59.407 50.000 26.56 9.26 45.36 3.66
1408 1523 2.297033 ACAATTTCGCAAGTTGCATCCT 59.703 40.909 26.56 6.42 45.36 3.24
1415 1530 4.502645 GTGTTAAGCACAATTTCGCAAGTT 59.497 37.500 0.00 0.00 46.91 2.66
1474 1590 4.695455 TCACCAGCTACTAAAGAACAATGC 59.305 41.667 0.00 0.00 0.00 3.56
1481 1597 6.595326 CACAATCATTCACCAGCTACTAAAGA 59.405 38.462 0.00 0.00 0.00 2.52
1482 1598 6.676456 GCACAATCATTCACCAGCTACTAAAG 60.676 42.308 0.00 0.00 0.00 1.85
1515 1631 2.639839 AGCCTCCAAGTTCTGCTTCTTA 59.360 45.455 0.00 0.00 34.69 2.10
1523 1639 2.348998 CGGCAGCCTCCAAGTTCT 59.651 61.111 10.54 0.00 0.00 3.01
1553 1669 1.488705 CCCTGGTGCACCCTCTGTTA 61.489 60.000 32.62 11.58 34.29 2.41
1555 1671 3.252284 CCCTGGTGCACCCTCTGT 61.252 66.667 32.62 0.00 34.29 3.41
1573 1689 3.432588 ACTCGCACTCTCGTCCGG 61.433 66.667 0.00 0.00 0.00 5.14
1575 1691 2.505118 GCACTCGCACTCTCGTCC 60.505 66.667 0.00 0.00 38.36 4.79
1583 1699 3.490759 CACCATCGGCACTCGCAC 61.491 66.667 0.00 0.00 41.24 5.34
1584 1700 4.758251 CCACCATCGGCACTCGCA 62.758 66.667 0.00 0.00 41.24 5.10
1589 1705 1.816074 TTTCTTACCACCATCGGCAC 58.184 50.000 0.00 0.00 0.00 5.01
1590 1706 2.570415 TTTTCTTACCACCATCGGCA 57.430 45.000 0.00 0.00 0.00 5.69
1602 1718 6.467339 CCTTTCCCCTCTTCCTCTTTTTCTTA 60.467 42.308 0.00 0.00 0.00 2.10
1608 1724 2.645297 GACCTTTCCCCTCTTCCTCTTT 59.355 50.000 0.00 0.00 0.00 2.52
1618 1734 0.340208 AGATCCTCGACCTTTCCCCT 59.660 55.000 0.00 0.00 0.00 4.79
1623 1739 1.558233 AACGGAGATCCTCGACCTTT 58.442 50.000 11.50 0.00 0.00 3.11
1674 1790 5.529060 TCACTTCTTCCTTTTCTGCTTCTTC 59.471 40.000 0.00 0.00 0.00 2.87
1718 1834 1.322442 GAGCAAAGCAAACCAGGAGT 58.678 50.000 0.00 0.00 0.00 3.85
1719 1835 0.239347 CGAGCAAAGCAAACCAGGAG 59.761 55.000 0.00 0.00 0.00 3.69
1733 1849 0.530744 AAAGCTACACGATCCGAGCA 59.469 50.000 0.00 0.00 37.40 4.26
1760 1876 7.151308 CAGGCAACATAGAAACAAAATTGGTA 58.849 34.615 0.00 0.00 41.41 3.25
1762 1878 5.409214 CCAGGCAACATAGAAACAAAATTGG 59.591 40.000 0.00 0.00 41.41 3.16
1764 1880 5.990996 CACCAGGCAACATAGAAACAAAATT 59.009 36.000 0.00 0.00 41.41 1.82
1850 1970 6.354794 ACACTACAGCATTTGTCCTAGTTA 57.645 37.500 0.00 0.00 41.29 2.24
1867 1987 2.100989 AGCAGGTGCCTACTACACTAC 58.899 52.381 0.00 0.00 43.38 2.73
1893 2013 2.069273 CACGAGTGAATGTGGAGGTTC 58.931 52.381 0.00 0.00 32.47 3.62
1934 2054 7.537306 GCAAACAACGACACAAGATACATTATT 59.463 33.333 0.00 0.00 0.00 1.40
1939 2059 3.623510 TGCAAACAACGACACAAGATACA 59.376 39.130 0.00 0.00 0.00 2.29
1940 2060 4.025229 TCTGCAAACAACGACACAAGATAC 60.025 41.667 0.00 0.00 0.00 2.24
1952 2072 3.503363 TCATCCAGATGTCTGCAAACAAC 59.497 43.478 0.00 0.00 42.47 3.32
1956 2076 3.986996 TCTCATCCAGATGTCTGCAAA 57.013 42.857 7.48 0.00 42.47 3.68
2003 2123 2.478831 GAATTCCAGATGAGTCTCGGC 58.521 52.381 0.00 0.00 30.42 5.54
2059 2179 2.270874 ATAGCTTTGGTGGGGCCTCG 62.271 60.000 0.84 0.00 38.35 4.63
2065 2185 2.310538 GGGAATGATAGCTTTGGTGGG 58.689 52.381 0.00 0.00 0.00 4.61
2105 2225 6.401394 TGAATGAGTTCACATAGAAGGACAG 58.599 40.000 0.00 0.00 39.36 3.51
2128 2248 9.405587 ACATTTAATCCACGAAATAACAAAGTG 57.594 29.630 0.00 0.00 0.00 3.16
2170 2290 3.973206 TCCAAATGACTCTTCCGCTAA 57.027 42.857 0.00 0.00 0.00 3.09
2302 2422 9.853177 ATAAGAAGGTCCAAGATAAATGGTTAG 57.147 33.333 0.00 0.00 39.09 2.34
2352 2472 8.589629 GCTTACAAGAGATTGCATAATTTGTTG 58.410 33.333 8.67 4.12 37.55 3.33
2358 2478 8.472413 ACAATTGCTTACAAGAGATTGCATAAT 58.528 29.630 5.05 0.00 39.69 1.28
2361 2481 6.071784 TCACAATTGCTTACAAGAGATTGCAT 60.072 34.615 5.05 0.00 39.69 3.96
2541 2662 9.508642 TGACAAGTTGTAATAATAATGTGGACA 57.491 29.630 8.88 0.00 0.00 4.02
2571 2713 9.143155 TCATATGTAAATCTCCAACAGCTACTA 57.857 33.333 1.90 0.00 0.00 1.82
2676 2818 6.615316 TGTTTACTCTCCATATGGATCAAGGA 59.385 38.462 24.73 16.21 44.46 3.36
2760 2902 2.355010 AAATCATGGCTGCTACCCTC 57.645 50.000 0.00 0.00 0.00 4.30
2823 2965 1.987807 CTTCCCATGATCAGGCGGGT 61.988 60.000 21.23 0.00 39.87 5.28
2927 3070 5.914898 AAAAGTCTGCCTGTGTTAAAGTT 57.085 34.783 0.00 0.00 0.00 2.66
2968 3111 0.587768 CACAACTGACATCAAGCGCA 59.412 50.000 11.47 0.00 0.00 6.09
2986 3129 4.009675 GGATGTGCATTCAGAAAGTACCA 58.990 43.478 4.44 0.00 0.00 3.25
2987 3130 4.009675 TGGATGTGCATTCAGAAAGTACC 58.990 43.478 4.44 0.00 0.00 3.34
3000 3143 5.503662 CACTAATTGCTAATGGATGTGCA 57.496 39.130 0.00 0.00 0.00 4.57
3022 3165 2.092323 GGGAGTAGGAAACAACATGGC 58.908 52.381 0.00 0.00 0.00 4.40
3036 3180 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
3037 3181 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
3052 3196 5.840693 ACATCCATTTGAGGGAGAAGTTTTT 59.159 36.000 0.00 0.00 37.96 1.94
3053 3197 5.397360 ACATCCATTTGAGGGAGAAGTTTT 58.603 37.500 0.00 0.00 37.96 2.43
3054 3198 5.003096 ACATCCATTTGAGGGAGAAGTTT 57.997 39.130 0.00 0.00 37.96 2.66
3055 3199 4.664688 ACATCCATTTGAGGGAGAAGTT 57.335 40.909 0.00 0.00 37.96 2.66
3056 3200 5.669447 AGATACATCCATTTGAGGGAGAAGT 59.331 40.000 0.00 0.00 37.96 3.01
3057 3201 6.185114 AGATACATCCATTTGAGGGAGAAG 57.815 41.667 0.00 0.00 37.96 2.85
3058 3202 6.239714 GCTAGATACATCCATTTGAGGGAGAA 60.240 42.308 0.00 0.00 37.96 2.87
3059 3203 5.247110 GCTAGATACATCCATTTGAGGGAGA 59.753 44.000 0.00 0.00 37.96 3.71
3060 3204 5.012458 TGCTAGATACATCCATTTGAGGGAG 59.988 44.000 0.00 0.00 37.96 4.30
3061 3205 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
3062 3206 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
3063 3207 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
3064 3208 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
3065 3209 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
3066 3210 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
3067 3211 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
3068 3212 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
3069 3213 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
3070 3214 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3071 3215 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3083 3227 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
3084 3228 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
3085 3229 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
3086 3230 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
3087 3231 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
3088 3232 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
3089 3233 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
3090 3234 7.290014 TCCTCAAATGGATGTATCTAGCACTAA 59.710 37.037 0.00 0.00 0.00 2.24
3091 3235 6.782494 TCCTCAAATGGATGTATCTAGCACTA 59.218 38.462 0.00 0.00 0.00 2.74
3092 3236 5.604231 TCCTCAAATGGATGTATCTAGCACT 59.396 40.000 0.00 0.00 0.00 4.40
3093 3237 5.858381 TCCTCAAATGGATGTATCTAGCAC 58.142 41.667 0.00 0.00 0.00 4.40
3094 3238 6.126796 TGTTCCTCAAATGGATGTATCTAGCA 60.127 38.462 0.00 0.00 35.83 3.49
3095 3239 6.291377 TGTTCCTCAAATGGATGTATCTAGC 58.709 40.000 0.00 0.00 35.83 3.42
3096 3240 7.041508 GCTTGTTCCTCAAATGGATGTATCTAG 60.042 40.741 0.00 0.00 35.83 2.43
3097 3241 6.767902 GCTTGTTCCTCAAATGGATGTATCTA 59.232 38.462 0.00 0.00 35.83 1.98
3098 3242 5.591877 GCTTGTTCCTCAAATGGATGTATCT 59.408 40.000 0.00 0.00 35.83 1.98
3099 3243 5.591877 AGCTTGTTCCTCAAATGGATGTATC 59.408 40.000 0.00 0.00 35.83 2.24
3100 3244 5.513233 AGCTTGTTCCTCAAATGGATGTAT 58.487 37.500 0.00 0.00 35.83 2.29
3101 3245 4.922206 AGCTTGTTCCTCAAATGGATGTA 58.078 39.130 0.00 0.00 35.83 2.29
3102 3246 3.771216 AGCTTGTTCCTCAAATGGATGT 58.229 40.909 0.00 0.00 35.83 3.06
3103 3247 4.491676 CAAGCTTGTTCCTCAAATGGATG 58.508 43.478 18.65 0.00 35.83 3.51
3104 3248 3.512724 CCAAGCTTGTTCCTCAAATGGAT 59.487 43.478 24.35 0.00 36.92 3.41
3105 3249 2.892852 CCAAGCTTGTTCCTCAAATGGA 59.107 45.455 24.35 0.00 36.92 3.41
3106 3250 2.028748 CCCAAGCTTGTTCCTCAAATGG 60.029 50.000 24.35 10.71 35.48 3.16
3107 3251 2.892852 TCCCAAGCTTGTTCCTCAAATG 59.107 45.455 24.35 5.47 35.48 2.32
3108 3252 2.893489 GTCCCAAGCTTGTTCCTCAAAT 59.107 45.455 24.35 0.00 35.48 2.32
3109 3253 2.306847 GTCCCAAGCTTGTTCCTCAAA 58.693 47.619 24.35 0.00 35.48 2.69
3110 3254 1.214175 TGTCCCAAGCTTGTTCCTCAA 59.786 47.619 24.35 1.41 34.61 3.02
3111 3255 0.843309 TGTCCCAAGCTTGTTCCTCA 59.157 50.000 24.35 12.85 0.00 3.86
3112 3256 1.882623 CTTGTCCCAAGCTTGTTCCTC 59.117 52.381 24.35 10.65 0.00 3.71
3113 3257 1.986882 CTTGTCCCAAGCTTGTTCCT 58.013 50.000 24.35 0.00 0.00 3.36
3114 3258 0.315251 GCTTGTCCCAAGCTTGTTCC 59.685 55.000 24.35 11.81 40.01 3.62
3115 3259 3.873805 GCTTGTCCCAAGCTTGTTC 57.126 52.632 24.35 14.17 40.01 3.18
3121 3265 0.039165 CGGAAAAGCTTGTCCCAAGC 60.039 55.000 26.94 18.69 43.31 4.01
3122 3266 0.598065 CCGGAAAAGCTTGTCCCAAG 59.402 55.000 26.94 14.69 0.00 3.61
3123 3267 0.183971 TCCGGAAAAGCTTGTCCCAA 59.816 50.000 26.94 14.20 0.00 4.12
3124 3268 0.536460 GTCCGGAAAAGCTTGTCCCA 60.536 55.000 26.94 13.18 0.00 4.37
3125 3269 1.574702 CGTCCGGAAAAGCTTGTCCC 61.575 60.000 26.94 13.97 0.00 4.46
3126 3270 1.574702 CCGTCCGGAAAAGCTTGTCC 61.575 60.000 24.00 24.00 37.50 4.02
3127 3271 0.601841 TCCGTCCGGAAAAGCTTGTC 60.602 55.000 5.23 8.23 42.05 3.18
3128 3272 0.602905 CTCCGTCCGGAAAAGCTTGT 60.603 55.000 5.23 0.00 44.66 3.16
3129 3273 1.298859 CCTCCGTCCGGAAAAGCTTG 61.299 60.000 5.23 0.00 44.66 4.01
3130 3274 1.003718 CCTCCGTCCGGAAAAGCTT 60.004 57.895 5.23 0.00 44.66 3.74
3131 3275 2.663196 CCTCCGTCCGGAAAAGCT 59.337 61.111 5.23 0.00 44.66 3.74
3132 3276 2.436115 CCCTCCGTCCGGAAAAGC 60.436 66.667 5.23 0.00 44.66 3.51
3133 3277 1.218316 CTCCCTCCGTCCGGAAAAG 59.782 63.158 5.23 3.59 44.66 2.27
3134 3278 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
3135 3279 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3136 3280 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3137 3281 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
3138 3282 0.969409 AAAGTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
3139 3283 1.755179 TAAAGTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
3140 3284 4.081254 ACAAATAAAGTACTCCCTCCGTCC 60.081 45.833 0.00 0.00 0.00 4.79
3141 3285 5.082251 ACAAATAAAGTACTCCCTCCGTC 57.918 43.478 0.00 0.00 0.00 4.79
3142 3286 6.610075 TTACAAATAAAGTACTCCCTCCGT 57.390 37.500 0.00 0.00 0.00 4.69
3168 3313 9.677567 GTTGTTAAGACAGAAAATCAAGCATTA 57.322 29.630 0.00 0.00 37.04 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.