Multiple sequence alignment - TraesCS7D01G057800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G057800 chr7D 100.000 2955 0 0 1 2955 31057243 31054289 0.000000e+00 5457.0
1 TraesCS7D01G057800 chr7D 88.038 744 71 10 1418 2157 31101686 31100957 0.000000e+00 865.0
2 TraesCS7D01G057800 chr7D 87.761 719 76 7 1418 2136 30984214 30983508 0.000000e+00 830.0
3 TraesCS7D01G057800 chr7D 88.017 701 52 12 662 1358 30984886 30984214 0.000000e+00 800.0
4 TraesCS7D01G057800 chr7D 85.282 727 75 12 662 1356 31102412 31101686 0.000000e+00 721.0
5 TraesCS7D01G057800 chr7D 90.795 478 44 0 1416 1893 31098691 31098214 8.930000e-180 640.0
6 TraesCS7D01G057800 chr7D 87.215 571 46 11 4 550 30985437 30984870 2.500000e-175 625.0
7 TraesCS7D01G057800 chr7D 86.740 543 58 8 826 1356 31070993 31070453 2.540000e-165 592.0
8 TraesCS7D01G057800 chr7D 87.067 433 33 8 130 550 31092851 31092430 4.460000e-128 468.0
9 TraesCS7D01G057800 chr7D 80.063 637 71 41 670 1276 31099361 31098751 3.520000e-114 422.0
10 TraesCS7D01G057800 chr7D 90.909 308 24 4 2650 2954 31062843 31062537 7.620000e-111 411.0
11 TraesCS7D01G057800 chr7D 84.817 382 40 8 1755 2136 31063506 31063143 4.650000e-98 368.0
12 TraesCS7D01G057800 chr7D 84.295 312 38 9 111 419 30981834 30981531 8.010000e-76 294.0
13 TraesCS7D01G057800 chr7D 74.674 691 133 32 1457 2136 31337720 31338379 4.850000e-68 268.0
14 TraesCS7D01G057800 chr7D 86.885 244 23 4 2411 2646 31063129 31062887 6.280000e-67 265.0
15 TraesCS7D01G057800 chr7D 74.566 692 132 31 1457 2136 31206240 31206899 2.260000e-66 263.0
16 TraesCS7D01G057800 chr7D 93.064 173 10 2 662 833 31092446 31092275 4.890000e-63 252.0
17 TraesCS7D01G057800 chr7A 96.622 1332 39 2 1433 2764 31529432 31528107 0.000000e+00 2206.0
18 TraesCS7D01G057800 chr7A 96.547 1332 40 2 1433 2764 31511630 31510305 0.000000e+00 2200.0
19 TraesCS7D01G057800 chr7A 96.471 1332 41 2 1433 2764 31547872 31546547 0.000000e+00 2194.0
20 TraesCS7D01G057800 chr7A 87.252 353 45 0 1002 1354 31512001 31511649 1.280000e-108 403.0
21 TraesCS7D01G057800 chr7A 87.252 353 45 0 1002 1354 31529803 31529451 1.280000e-108 403.0
22 TraesCS7D01G057800 chr7A 87.252 353 45 0 1002 1354 31548243 31547891 1.280000e-108 403.0
23 TraesCS7D01G057800 chr7A 98.438 192 3 0 2764 2955 31525252 31525061 3.650000e-89 339.0
24 TraesCS7D01G057800 chr7A 98.438 192 3 0 2764 2955 31543692 31543501 3.650000e-89 339.0
25 TraesCS7D01G057800 chr7A 97.917 192 4 0 2764 2955 31507449 31507258 1.700000e-87 333.0
26 TraesCS7D01G057800 chr7A 75.899 278 40 15 670 930 31512302 31512035 1.860000e-22 117.0
27 TraesCS7D01G057800 chr7A 75.899 278 40 15 670 930 31530104 31529837 1.860000e-22 117.0
28 TraesCS7D01G057800 chr7A 75.899 278 40 15 670 930 31548544 31548277 1.860000e-22 117.0
29 TraesCS7D01G057800 chr7A 78.808 151 28 4 2394 2543 31739430 31739577 6.740000e-17 99.0
30 TraesCS7D01G057800 chrUn 96.830 694 21 1 2071 2764 341131052 341130360 0.000000e+00 1158.0
31 TraesCS7D01G057800 chrUn 92.241 116 6 1 547 662 351848625 351848513 8.480000e-36 161.0
32 TraesCS7D01G057800 chr4A 88.687 716 64 8 1418 2133 697433206 697433904 0.000000e+00 857.0
33 TraesCS7D01G057800 chr4A 89.815 648 52 5 1420 2062 697439647 697440285 0.000000e+00 819.0
34 TraesCS7D01G057800 chr4A 86.351 718 75 13 662 1356 697438928 697439645 0.000000e+00 761.0
35 TraesCS7D01G057800 chr4A 84.681 705 88 14 662 1354 697432508 697433204 0.000000e+00 686.0
36 TraesCS7D01G057800 chr4A 89.644 309 28 1 2647 2955 697440642 697440946 9.930000e-105 390.0
37 TraesCS7D01G057800 chr4A 83.871 310 45 4 2650 2955 696543618 696543310 1.040000e-74 291.0
38 TraesCS7D01G057800 chr4A 85.393 267 25 8 2392 2646 697440337 697440601 6.280000e-67 265.0
39 TraesCS7D01G057800 chr4A 86.344 227 16 5 335 547 697432296 697432521 1.770000e-57 233.0
40 TraesCS7D01G057800 chr4A 86.344 227 16 5 335 547 697438716 697438941 1.770000e-57 233.0
41 TraesCS7D01G057800 chr4A 87.857 140 15 2 2647 2785 697512425 697512563 2.360000e-36 163.0
42 TraesCS7D01G057800 chr5D 86.415 714 65 13 1418 2131 37207942 37208623 0.000000e+00 752.0
43 TraesCS7D01G057800 chr5D 87.402 254 19 6 2402 2646 37208679 37208928 2.240000e-71 279.0
44 TraesCS7D01G057800 chr5D 91.220 205 17 1 2691 2895 37209175 37209378 8.070000e-71 278.0
45 TraesCS7D01G057800 chr3A 94.714 227 12 0 2169 2395 137577310 137577084 1.300000e-93 353.0
46 TraesCS7D01G057800 chr3A 86.617 269 33 2 2132 2400 475281056 475281321 8.010000e-76 294.0
47 TraesCS7D01G057800 chr1A 86.891 267 31 3 2132 2395 434422674 434422939 2.230000e-76 296.0
48 TraesCS7D01G057800 chr3B 86.296 270 33 3 2132 2400 457573978 457574244 1.040000e-74 291.0
49 TraesCS7D01G057800 chr3B 96.429 56 2 0 607 662 52720793 52720848 3.140000e-15 93.5
50 TraesCS7D01G057800 chr6B 86.590 261 35 0 2135 2395 162269298 162269558 3.730000e-74 289.0
51 TraesCS7D01G057800 chr7B 92.241 116 6 1 547 662 695043887 695043775 8.480000e-36 161.0
52 TraesCS7D01G057800 chr7B 91.228 114 7 1 549 662 683452849 683452739 5.100000e-33 152.0
53 TraesCS7D01G057800 chr7B 90.351 114 8 1 549 662 136348984 136349094 2.370000e-31 147.0
54 TraesCS7D01G057800 chr6A 87.611 113 11 2 550 662 571739384 571739493 8.600000e-26 128.0
55 TraesCS7D01G057800 chr6A 89.831 59 6 0 604 662 41495472 41495530 3.160000e-10 76.8
56 TraesCS7D01G057800 chr5B 92.308 65 5 0 598 662 595318259 595318195 3.140000e-15 93.5
57 TraesCS7D01G057800 chr4B 96.364 55 2 0 609 663 594703982 594703928 1.130000e-14 91.6
58 TraesCS7D01G057800 chr5A 100.000 41 0 0 549 589 462565584 462565544 3.160000e-10 76.8
59 TraesCS7D01G057800 chr5A 100.000 39 0 0 551 589 462555394 462555356 4.090000e-09 73.1
60 TraesCS7D01G057800 chr5A 97.561 41 1 0 549 589 462543484 462543444 1.470000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G057800 chr7D 31054289 31057243 2954 True 5457.000000 5457 100.000000 1 2955 1 chr7D.!!$R1 2954
1 TraesCS7D01G057800 chr7D 31098214 31102412 4198 True 662.000000 865 86.044500 662 2157 4 chr7D.!!$R6 1495
2 TraesCS7D01G057800 chr7D 30981531 30985437 3906 True 637.250000 830 86.822000 4 2136 4 chr7D.!!$R3 2132
3 TraesCS7D01G057800 chr7D 31070453 31070993 540 True 592.000000 592 86.740000 826 1356 1 chr7D.!!$R2 530
4 TraesCS7D01G057800 chr7D 31092275 31092851 576 True 360.000000 468 90.065500 130 833 2 chr7D.!!$R5 703
5 TraesCS7D01G057800 chr7D 31062537 31063506 969 True 348.000000 411 87.537000 1755 2954 3 chr7D.!!$R4 1199
6 TraesCS7D01G057800 chr7D 31337720 31338379 659 False 268.000000 268 74.674000 1457 2136 1 chr7D.!!$F2 679
7 TraesCS7D01G057800 chr7D 31206240 31206899 659 False 263.000000 263 74.566000 1457 2136 1 chr7D.!!$F1 679
8 TraesCS7D01G057800 chr7A 31525061 31530104 5043 True 766.250000 2206 89.552750 670 2955 4 chr7A.!!$R2 2285
9 TraesCS7D01G057800 chr7A 31507258 31512302 5044 True 763.250000 2200 89.403750 670 2955 4 chr7A.!!$R1 2285
10 TraesCS7D01G057800 chr7A 31543501 31548544 5043 True 763.250000 2194 89.515000 670 2955 4 chr7A.!!$R3 2285
11 TraesCS7D01G057800 chrUn 341130360 341131052 692 True 1158.000000 1158 96.830000 2071 2764 1 chrUn.!!$R1 693
12 TraesCS7D01G057800 chr4A 697432296 697433904 1608 False 592.000000 857 86.570667 335 2133 3 chr4A.!!$F2 1798
13 TraesCS7D01G057800 chr4A 697438716 697440946 2230 False 493.600000 819 87.509400 335 2955 5 chr4A.!!$F3 2620
14 TraesCS7D01G057800 chr5D 37207942 37209378 1436 False 436.333333 752 88.345667 1418 2895 3 chr5D.!!$F1 1477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 826 0.029834 GGGCTGCATTAATCGCACAG 59.970 55.0 0.5 4.8 35.08 3.66 F
1364 1484 0.726827 CCTCACACACACACACACAC 59.273 55.0 0.0 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1938 0.663568 AGTGTAGAGCGTGACGTTGC 60.664 55.0 6.91 0.0 0.0 4.17 R
2580 2949 1.890876 ACAGCTCGGCACACAAATAA 58.109 45.0 0.00 0.0 0.0 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 83 4.277174 ACGTGAGATCTATTGTGGAGCTAG 59.723 45.833 0.00 0.00 29.09 3.42
80 85 4.038522 GTGAGATCTATTGTGGAGCTAGCA 59.961 45.833 18.83 0.00 29.09 3.49
98 107 1.606601 AGCTGTGTACGGGAGCAGA 60.607 57.895 11.76 0.00 35.03 4.26
104 113 2.089980 GTGTACGGGAGCAGAGTTAGA 58.910 52.381 0.00 0.00 0.00 2.10
105 114 2.097791 GTGTACGGGAGCAGAGTTAGAG 59.902 54.545 0.00 0.00 0.00 2.43
106 115 2.290768 TGTACGGGAGCAGAGTTAGAGT 60.291 50.000 0.00 0.00 0.00 3.24
109 118 1.677052 CGGGAGCAGAGTTAGAGTACC 59.323 57.143 0.00 0.00 0.00 3.34
110 119 2.736347 GGGAGCAGAGTTAGAGTACCA 58.264 52.381 0.00 0.00 0.00 3.25
114 123 4.930405 GGAGCAGAGTTAGAGTACCAAAAC 59.070 45.833 0.00 0.00 0.00 2.43
142 151 4.023707 CCATCGTATTCAAAATGAGAGGCC 60.024 45.833 0.00 0.00 0.00 5.19
251 262 1.675641 GTCCGCATGAGCCCTGTTT 60.676 57.895 0.00 0.00 37.52 2.83
268 279 2.050836 TTTCTGACGCTCCAAGGGCA 62.051 55.000 0.00 0.00 0.00 5.36
389 404 6.012658 ACTACAAACTGTCCGTATCGTTTA 57.987 37.500 0.00 0.00 0.00 2.01
391 406 7.092716 ACTACAAACTGTCCGTATCGTTTAAT 58.907 34.615 0.00 0.00 0.00 1.40
396 411 8.414173 CAAACTGTCCGTATCGTTTAATTTTTG 58.586 33.333 0.00 0.00 0.00 2.44
448 463 7.542477 CAGGCGAGAATTAGTCATCGTATTAAT 59.458 37.037 0.00 0.00 37.49 1.40
469 485 0.744874 ATTAGAGGCGCGCAGACTAA 59.255 50.000 34.42 31.62 39.26 2.24
479 495 0.793478 CGCAGACTAACACGGAGTCG 60.793 60.000 0.00 0.00 46.58 4.18
489 505 5.919141 ACTAACACGGAGTCGCAATATATTC 59.081 40.000 0.00 0.00 41.61 1.75
521 551 1.068417 GGTGTGCACTGACGTACCA 59.932 57.895 19.41 0.00 0.00 3.25
533 563 2.356553 GTACCAACGCTGTCGCCA 60.357 61.111 0.00 0.00 39.84 5.69
534 564 1.957186 GTACCAACGCTGTCGCCAA 60.957 57.895 0.00 0.00 39.84 4.52
535 565 1.957186 TACCAACGCTGTCGCCAAC 60.957 57.895 0.00 0.00 39.84 3.77
536 566 2.372040 TACCAACGCTGTCGCCAACT 62.372 55.000 0.00 0.00 39.84 3.16
537 567 2.542907 CCAACGCTGTCGCCAACTT 61.543 57.895 0.00 0.00 39.84 2.66
538 568 1.225376 CCAACGCTGTCGCCAACTTA 61.225 55.000 0.00 0.00 39.84 2.24
539 569 0.110823 CAACGCTGTCGCCAACTTAC 60.111 55.000 0.00 0.00 39.84 2.34
540 570 0.249741 AACGCTGTCGCCAACTTACT 60.250 50.000 0.00 0.00 39.84 2.24
541 571 0.599558 ACGCTGTCGCCAACTTACTA 59.400 50.000 0.00 0.00 39.84 1.82
542 572 1.203994 ACGCTGTCGCCAACTTACTAT 59.796 47.619 0.00 0.00 39.84 2.12
543 573 1.852895 CGCTGTCGCCAACTTACTATC 59.147 52.381 0.00 0.00 0.00 2.08
544 574 2.202566 GCTGTCGCCAACTTACTATCC 58.797 52.381 0.00 0.00 0.00 2.59
545 575 2.822764 CTGTCGCCAACTTACTATCCC 58.177 52.381 0.00 0.00 0.00 3.85
546 576 2.431057 CTGTCGCCAACTTACTATCCCT 59.569 50.000 0.00 0.00 0.00 4.20
547 577 2.429610 TGTCGCCAACTTACTATCCCTC 59.570 50.000 0.00 0.00 0.00 4.30
548 578 2.694109 GTCGCCAACTTACTATCCCTCT 59.306 50.000 0.00 0.00 0.00 3.69
549 579 2.957006 TCGCCAACTTACTATCCCTCTC 59.043 50.000 0.00 0.00 0.00 3.20
550 580 2.959707 CGCCAACTTACTATCCCTCTCT 59.040 50.000 0.00 0.00 0.00 3.10
551 581 3.004944 CGCCAACTTACTATCCCTCTCTC 59.995 52.174 0.00 0.00 0.00 3.20
552 582 3.004944 GCCAACTTACTATCCCTCTCTCG 59.995 52.174 0.00 0.00 0.00 4.04
553 583 4.462133 CCAACTTACTATCCCTCTCTCGA 58.538 47.826 0.00 0.00 0.00 4.04
554 584 4.888239 CCAACTTACTATCCCTCTCTCGAA 59.112 45.833 0.00 0.00 0.00 3.71
555 585 5.360144 CCAACTTACTATCCCTCTCTCGAAA 59.640 44.000 0.00 0.00 0.00 3.46
556 586 6.267070 CAACTTACTATCCCTCTCTCGAAAC 58.733 44.000 0.00 0.00 0.00 2.78
557 587 5.507637 ACTTACTATCCCTCTCTCGAAACA 58.492 41.667 0.00 0.00 0.00 2.83
558 588 5.591067 ACTTACTATCCCTCTCTCGAAACAG 59.409 44.000 0.00 0.00 0.00 3.16
559 589 3.292460 ACTATCCCTCTCTCGAAACAGG 58.708 50.000 0.00 0.00 0.00 4.00
560 590 0.827368 ATCCCTCTCTCGAAACAGGC 59.173 55.000 0.00 0.00 0.00 4.85
561 591 0.251832 TCCCTCTCTCGAAACAGGCT 60.252 55.000 0.00 0.00 0.00 4.58
562 592 0.610687 CCCTCTCTCGAAACAGGCTT 59.389 55.000 0.00 0.00 0.00 4.35
563 593 1.674221 CCCTCTCTCGAAACAGGCTTG 60.674 57.143 0.00 0.00 0.00 4.01
564 594 1.074752 CTCTCTCGAAACAGGCTTGC 58.925 55.000 0.00 0.00 0.00 4.01
565 595 0.667487 TCTCTCGAAACAGGCTTGCG 60.667 55.000 0.00 0.00 0.00 4.85
566 596 2.174349 CTCGAAACAGGCTTGCGC 59.826 61.111 0.00 0.00 0.00 6.09
599 629 9.719355 ATATTAATATAGCAACAATCACACCGA 57.281 29.630 6.16 0.00 0.00 4.69
600 630 7.851387 TTAATATAGCAACAATCACACCGAA 57.149 32.000 0.00 0.00 0.00 4.30
601 631 5.734855 ATATAGCAACAATCACACCGAAC 57.265 39.130 0.00 0.00 0.00 3.95
602 632 1.967319 AGCAACAATCACACCGAACT 58.033 45.000 0.00 0.00 0.00 3.01
603 633 3.120321 AGCAACAATCACACCGAACTA 57.880 42.857 0.00 0.00 0.00 2.24
604 634 3.674997 AGCAACAATCACACCGAACTAT 58.325 40.909 0.00 0.00 0.00 2.12
605 635 3.684788 AGCAACAATCACACCGAACTATC 59.315 43.478 0.00 0.00 0.00 2.08
623 653 4.312052 GCTGGGGCGAATAACACA 57.688 55.556 0.00 0.00 0.00 3.72
624 654 2.793831 GCTGGGGCGAATAACACAT 58.206 52.632 0.00 0.00 0.00 3.21
625 655 0.663153 GCTGGGGCGAATAACACATC 59.337 55.000 0.00 0.00 0.00 3.06
626 656 2.016604 GCTGGGGCGAATAACACATCA 61.017 52.381 0.00 0.00 0.00 3.07
627 657 2.364632 CTGGGGCGAATAACACATCAA 58.635 47.619 0.00 0.00 0.00 2.57
628 658 2.355756 CTGGGGCGAATAACACATCAAG 59.644 50.000 0.00 0.00 0.00 3.02
629 659 1.065551 GGGGCGAATAACACATCAAGC 59.934 52.381 0.00 0.00 0.00 4.01
630 660 1.065551 GGGCGAATAACACATCAAGCC 59.934 52.381 0.00 0.00 42.32 4.35
631 661 1.065551 GGCGAATAACACATCAAGCCC 59.934 52.381 0.00 0.00 37.54 5.19
632 662 1.742831 GCGAATAACACATCAAGCCCA 59.257 47.619 0.00 0.00 0.00 5.36
633 663 2.163412 GCGAATAACACATCAAGCCCAA 59.837 45.455 0.00 0.00 0.00 4.12
634 664 3.366883 GCGAATAACACATCAAGCCCAAA 60.367 43.478 0.00 0.00 0.00 3.28
635 665 4.414852 CGAATAACACATCAAGCCCAAAG 58.585 43.478 0.00 0.00 0.00 2.77
636 666 4.155826 CGAATAACACATCAAGCCCAAAGA 59.844 41.667 0.00 0.00 0.00 2.52
637 667 5.163622 CGAATAACACATCAAGCCCAAAGAT 60.164 40.000 0.00 0.00 0.00 2.40
638 668 6.038161 CGAATAACACATCAAGCCCAAAGATA 59.962 38.462 0.00 0.00 0.00 1.98
639 669 7.415095 CGAATAACACATCAAGCCCAAAGATAA 60.415 37.037 0.00 0.00 0.00 1.75
640 670 7.716799 ATAACACATCAAGCCCAAAGATAAA 57.283 32.000 0.00 0.00 0.00 1.40
641 671 6.418057 AACACATCAAGCCCAAAGATAAAA 57.582 33.333 0.00 0.00 0.00 1.52
642 672 5.783111 ACACATCAAGCCCAAAGATAAAAC 58.217 37.500 0.00 0.00 0.00 2.43
643 673 5.304101 ACACATCAAGCCCAAAGATAAAACA 59.696 36.000 0.00 0.00 0.00 2.83
644 674 6.183360 ACACATCAAGCCCAAAGATAAAACAA 60.183 34.615 0.00 0.00 0.00 2.83
645 675 6.366877 CACATCAAGCCCAAAGATAAAACAAG 59.633 38.462 0.00 0.00 0.00 3.16
646 676 6.267471 ACATCAAGCCCAAAGATAAAACAAGA 59.733 34.615 0.00 0.00 0.00 3.02
647 677 6.723298 TCAAGCCCAAAGATAAAACAAGAA 57.277 33.333 0.00 0.00 0.00 2.52
648 678 6.748132 TCAAGCCCAAAGATAAAACAAGAAG 58.252 36.000 0.00 0.00 0.00 2.85
649 679 6.549364 TCAAGCCCAAAGATAAAACAAGAAGA 59.451 34.615 0.00 0.00 0.00 2.87
650 680 6.976934 AGCCCAAAGATAAAACAAGAAGAA 57.023 33.333 0.00 0.00 0.00 2.52
651 681 6.749139 AGCCCAAAGATAAAACAAGAAGAAC 58.251 36.000 0.00 0.00 0.00 3.01
652 682 6.323739 AGCCCAAAGATAAAACAAGAAGAACA 59.676 34.615 0.00 0.00 0.00 3.18
653 683 6.983890 GCCCAAAGATAAAACAAGAAGAACAA 59.016 34.615 0.00 0.00 0.00 2.83
654 684 7.042725 GCCCAAAGATAAAACAAGAAGAACAAC 60.043 37.037 0.00 0.00 0.00 3.32
655 685 7.978975 CCCAAAGATAAAACAAGAAGAACAACA 59.021 33.333 0.00 0.00 0.00 3.33
656 686 9.023967 CCAAAGATAAAACAAGAAGAACAACAG 57.976 33.333 0.00 0.00 0.00 3.16
657 687 9.787532 CAAAGATAAAACAAGAAGAACAACAGA 57.212 29.630 0.00 0.00 0.00 3.41
659 689 8.964476 AGATAAAACAAGAAGAACAACAGAGA 57.036 30.769 0.00 0.00 0.00 3.10
660 690 9.396022 AGATAAAACAAGAAGAACAACAGAGAA 57.604 29.630 0.00 0.00 0.00 2.87
668 698 8.450964 CAAGAAGAACAACAGAGAAAACTTACA 58.549 33.333 0.00 0.00 0.00 2.41
688 718 0.916086 ATCCCTGTCCGCATAAACCA 59.084 50.000 0.00 0.00 0.00 3.67
708 739 0.875059 CTTTCCTGACGTTCCAAGGC 59.125 55.000 0.00 0.00 0.00 4.35
755 801 8.939929 TGTGTTCTCTGATGAATATCAAAAGAC 58.060 33.333 0.00 0.00 42.48 3.01
779 826 0.029834 GGGCTGCATTAATCGCACAG 59.970 55.000 0.50 4.80 35.08 3.66
782 829 2.380102 CTGCATTAATCGCACAGCTC 57.620 50.000 8.04 0.00 35.08 4.09
849 901 3.747976 GCACCCCAATGCACGTCC 61.748 66.667 0.00 0.00 45.39 4.79
1029 1145 4.766373 TGCAATAATGGCTTCTCTCACAAA 59.234 37.500 0.00 0.00 0.00 2.83
1030 1146 5.243507 TGCAATAATGGCTTCTCTCACAAAA 59.756 36.000 0.00 0.00 0.00 2.44
1045 1161 3.081061 CACAAAACCATGGCTAGTGCTA 58.919 45.455 13.04 0.00 39.59 3.49
1048 1164 3.721087 AAACCATGGCTAGTGCTACTT 57.279 42.857 13.04 0.00 39.59 2.24
1049 1165 2.990066 ACCATGGCTAGTGCTACTTC 57.010 50.000 13.04 0.00 39.59 3.01
1083 1199 3.551496 CTTTCCTCGTGGCAGCCCA 62.551 63.158 9.64 0.00 39.32 5.36
1123 1239 2.125633 GCCGGGTTCGAGAAGGTC 60.126 66.667 2.18 0.00 39.00 3.85
1124 1240 2.939261 GCCGGGTTCGAGAAGGTCA 61.939 63.158 2.18 0.00 39.00 4.02
1129 1245 1.433534 GGTTCGAGAAGGTCAAGCTG 58.566 55.000 0.00 0.00 0.00 4.24
1177 1293 1.006571 GTTCAACGTGCCGGAGAGA 60.007 57.895 5.05 0.00 0.00 3.10
1234 1350 1.716826 GGGTGCACCGAAACGACAAA 61.717 55.000 29.08 0.00 36.71 2.83
1246 1362 1.011333 ACGACAAACCCTTCAACACG 58.989 50.000 0.00 0.00 0.00 4.49
1276 1392 3.246880 AACCCCCGCTCCGAAGTT 61.247 61.111 0.00 0.00 0.00 2.66
1301 1417 2.434331 GGGTAAGCACACTGCCCA 59.566 61.111 0.00 0.00 46.52 5.36
1358 1478 1.951510 CATGGCCTCACACACACAC 59.048 57.895 3.32 0.00 0.00 3.82
1359 1479 0.818852 CATGGCCTCACACACACACA 60.819 55.000 3.32 0.00 0.00 3.72
1360 1480 0.819259 ATGGCCTCACACACACACAC 60.819 55.000 3.32 0.00 0.00 3.82
1361 1481 1.451207 GGCCTCACACACACACACA 60.451 57.895 0.00 0.00 0.00 3.72
1362 1482 1.714899 GGCCTCACACACACACACAC 61.715 60.000 0.00 0.00 0.00 3.82
1363 1483 1.024046 GCCTCACACACACACACACA 61.024 55.000 0.00 0.00 0.00 3.72
1364 1484 0.726827 CCTCACACACACACACACAC 59.273 55.000 0.00 0.00 0.00 3.82
1365 1485 1.437625 CTCACACACACACACACACA 58.562 50.000 0.00 0.00 0.00 3.72
1366 1486 1.128507 CTCACACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
1367 1487 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1368 1488 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1369 1489 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1370 1490 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
1371 1491 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
1372 1492 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
1373 1493 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
1374 1494 5.179182 CACACACACACACACACACATATAT 59.821 40.000 0.00 0.00 0.00 0.86
1375 1495 6.367422 CACACACACACACACACACATATATA 59.633 38.462 0.00 0.00 0.00 0.86
1376 1496 7.064490 CACACACACACACACACACATATATAT 59.936 37.037 0.00 0.00 0.00 0.86
1377 1497 8.254508 ACACACACACACACACACATATATATA 58.745 33.333 0.00 0.00 0.00 0.86
1378 1498 9.260002 CACACACACACACACACATATATATAT 57.740 33.333 0.00 0.00 0.00 0.86
1379 1499 9.260002 ACACACACACACACACATATATATATG 57.740 33.333 24.97 24.97 44.37 1.78
1486 1606 2.358737 GTGTGGCAGTTCGAGGGG 60.359 66.667 0.00 0.00 0.00 4.79
1704 1830 4.088762 GGCCGTGTACGTCGACGA 62.089 66.667 41.52 23.28 43.02 4.20
1812 1938 0.320683 TGCATGGAGTCACGTTGGAG 60.321 55.000 0.00 0.00 0.00 3.86
1898 2026 4.307432 GTCTACGGTAGCATGCATGTATT 58.693 43.478 26.79 15.43 0.00 1.89
1899 2027 4.750098 GTCTACGGTAGCATGCATGTATTT 59.250 41.667 26.79 13.14 0.00 1.40
1900 2028 5.236478 GTCTACGGTAGCATGCATGTATTTT 59.764 40.000 26.79 10.60 0.00 1.82
1901 2029 6.422701 GTCTACGGTAGCATGCATGTATTTTA 59.577 38.462 26.79 11.12 0.00 1.52
1902 2030 6.987404 TCTACGGTAGCATGCATGTATTTTAA 59.013 34.615 26.79 8.53 0.00 1.52
2139 2281 8.404000 AGACAACCACAAGTTACTATATACTCG 58.596 37.037 0.00 0.00 36.18 4.18
2165 2496 7.495934 GCTCCGTTCCATAATATAGTGCATATT 59.504 37.037 0.00 0.00 41.68 1.28
2219 2550 5.066968 TGACCAAGTTTGTGGAGAAAAAC 57.933 39.130 0.00 0.00 41.65 2.43
2434 2801 0.105709 TGGTCTGAGTCTGTGGTGGA 60.106 55.000 0.00 0.00 0.00 4.02
2580 2949 2.298610 TCTCACTACTGATCGCGGATT 58.701 47.619 6.13 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.737427 ACAATAGATCTCACGTTTCTATACAAG 57.263 33.333 0.00 3.27 32.80 3.16
52 53 4.268884 GCTCCACAATAGATCTCACGTTTC 59.731 45.833 0.00 0.00 0.00 2.78
78 83 2.815647 GCTCCCGTACACAGCTGC 60.816 66.667 15.27 0.00 0.00 5.25
80 85 1.599606 CTCTGCTCCCGTACACAGCT 61.600 60.000 8.65 0.00 34.03 4.24
98 107 6.160576 TGGTTACGTTTTGGTACTCTAACT 57.839 37.500 0.00 0.00 0.00 2.24
104 113 3.993920 ACGATGGTTACGTTTTGGTACT 58.006 40.909 0.00 0.00 41.18 2.73
105 114 6.090628 TGAATACGATGGTTACGTTTTGGTAC 59.909 38.462 0.00 0.00 43.62 3.34
106 115 6.162079 TGAATACGATGGTTACGTTTTGGTA 58.838 36.000 0.00 0.00 43.62 3.25
109 118 7.839438 TTTTGAATACGATGGTTACGTTTTG 57.161 32.000 0.00 0.00 43.62 2.44
110 119 8.291032 TCATTTTGAATACGATGGTTACGTTTT 58.709 29.630 0.00 0.00 43.62 2.43
114 123 7.229228 TCTCATTTTGAATACGATGGTTACG 57.771 36.000 0.00 0.00 0.00 3.18
142 151 0.172578 TTGTGCCTCCGTCATAGTCG 59.827 55.000 0.00 0.00 0.00 4.18
191 200 1.575244 CCTCGGTATGTCAGTGCATG 58.425 55.000 9.46 0.00 0.00 4.06
251 262 2.922503 TGCCCTTGGAGCGTCAGA 60.923 61.111 0.00 0.00 0.00 3.27
268 279 0.687427 AAGTGTGCAAAGGGGCAACT 60.687 50.000 0.00 0.00 46.93 3.16
318 331 3.167485 TGCAGCCATTTTCTCTTTGGAT 58.833 40.909 0.00 0.00 31.94 3.41
365 378 4.510038 ACGATACGGACAGTTTGTAGTT 57.490 40.909 0.00 0.00 0.00 2.24
411 426 4.607293 ATTCTCGCCTGCACAATAGATA 57.393 40.909 0.00 0.00 0.00 1.98
422 437 3.085443 ACGATGACTAATTCTCGCCTG 57.915 47.619 0.00 0.00 34.60 4.85
448 463 0.744874 AGTCTGCGCGCCTCTAATTA 59.255 50.000 30.77 5.88 0.00 1.40
469 485 3.305964 CGAATATATTGCGACTCCGTGT 58.694 45.455 1.78 0.00 38.24 4.49
479 495 2.554032 ACTTGCTGGGCGAATATATTGC 59.446 45.455 1.78 6.97 0.00 3.56
489 505 3.118454 CACCGTACTTGCTGGGCG 61.118 66.667 0.00 0.00 0.00 6.13
533 563 5.950549 TGTTTCGAGAGAGGGATAGTAAGTT 59.049 40.000 0.00 0.00 43.69 2.66
534 564 5.507637 TGTTTCGAGAGAGGGATAGTAAGT 58.492 41.667 0.00 0.00 43.69 2.24
535 565 5.009210 CCTGTTTCGAGAGAGGGATAGTAAG 59.991 48.000 11.07 0.00 43.69 2.34
536 566 4.888239 CCTGTTTCGAGAGAGGGATAGTAA 59.112 45.833 11.07 0.00 43.69 2.24
537 567 4.462133 CCTGTTTCGAGAGAGGGATAGTA 58.538 47.826 11.07 0.00 43.69 1.82
538 568 3.292460 CCTGTTTCGAGAGAGGGATAGT 58.708 50.000 11.07 0.00 43.69 2.12
539 569 2.035321 GCCTGTTTCGAGAGAGGGATAG 59.965 54.545 19.26 0.00 43.69 2.08
540 570 2.032620 GCCTGTTTCGAGAGAGGGATA 58.967 52.381 19.26 0.00 43.69 2.59
541 571 0.827368 GCCTGTTTCGAGAGAGGGAT 59.173 55.000 19.26 0.00 43.69 3.85
542 572 0.251832 AGCCTGTTTCGAGAGAGGGA 60.252 55.000 19.26 0.00 43.69 4.20
543 573 0.610687 AAGCCTGTTTCGAGAGAGGG 59.389 55.000 19.26 5.41 43.69 4.30
544 574 1.719600 CAAGCCTGTTTCGAGAGAGG 58.280 55.000 14.29 14.29 43.69 3.69
545 575 1.074752 GCAAGCCTGTTTCGAGAGAG 58.925 55.000 0.00 0.00 43.69 3.20
546 576 0.667487 CGCAAGCCTGTTTCGAGAGA 60.667 55.000 0.00 0.00 39.20 3.10
547 577 1.784062 CGCAAGCCTGTTTCGAGAG 59.216 57.895 0.00 0.00 0.00 3.20
548 578 3.951332 CGCAAGCCTGTTTCGAGA 58.049 55.556 0.00 0.00 0.00 4.04
573 603 9.719355 TCGGTGTGATTGTTGCTATATTAATAT 57.281 29.630 12.51 12.51 0.00 1.28
574 604 9.549078 TTCGGTGTGATTGTTGCTATATTAATA 57.451 29.630 0.00 0.00 0.00 0.98
575 605 8.342634 GTTCGGTGTGATTGTTGCTATATTAAT 58.657 33.333 0.00 0.00 0.00 1.40
576 606 7.551262 AGTTCGGTGTGATTGTTGCTATATTAA 59.449 33.333 0.00 0.00 0.00 1.40
577 607 7.045416 AGTTCGGTGTGATTGTTGCTATATTA 58.955 34.615 0.00 0.00 0.00 0.98
578 608 5.880332 AGTTCGGTGTGATTGTTGCTATATT 59.120 36.000 0.00 0.00 0.00 1.28
579 609 5.428253 AGTTCGGTGTGATTGTTGCTATAT 58.572 37.500 0.00 0.00 0.00 0.86
580 610 4.827692 AGTTCGGTGTGATTGTTGCTATA 58.172 39.130 0.00 0.00 0.00 1.31
581 611 3.674997 AGTTCGGTGTGATTGTTGCTAT 58.325 40.909 0.00 0.00 0.00 2.97
582 612 3.120321 AGTTCGGTGTGATTGTTGCTA 57.880 42.857 0.00 0.00 0.00 3.49
583 613 1.967319 AGTTCGGTGTGATTGTTGCT 58.033 45.000 0.00 0.00 0.00 3.91
584 614 3.483574 CGATAGTTCGGTGTGATTGTTGC 60.484 47.826 0.00 0.00 41.74 4.17
585 615 3.483574 GCGATAGTTCGGTGTGATTGTTG 60.484 47.826 0.00 0.00 45.59 3.33
586 616 2.671396 GCGATAGTTCGGTGTGATTGTT 59.329 45.455 0.00 0.00 45.59 2.83
587 617 2.268298 GCGATAGTTCGGTGTGATTGT 58.732 47.619 0.00 0.00 45.59 2.71
588 618 2.998668 GCGATAGTTCGGTGTGATTG 57.001 50.000 0.00 0.00 45.59 2.67
596 626 2.280186 GCCCCAGCGATAGTTCGG 60.280 66.667 0.00 0.00 45.59 4.30
606 636 0.663153 GATGTGTTATTCGCCCCAGC 59.337 55.000 0.00 0.00 0.00 4.85
607 637 2.036958 TGATGTGTTATTCGCCCCAG 57.963 50.000 0.00 0.00 0.00 4.45
608 638 2.364632 CTTGATGTGTTATTCGCCCCA 58.635 47.619 0.00 0.00 0.00 4.96
609 639 1.065551 GCTTGATGTGTTATTCGCCCC 59.934 52.381 0.00 0.00 0.00 5.80
610 640 1.065551 GGCTTGATGTGTTATTCGCCC 59.934 52.381 0.00 0.00 0.00 6.13
611 641 1.065551 GGGCTTGATGTGTTATTCGCC 59.934 52.381 0.00 0.00 35.63 5.54
612 642 1.742831 TGGGCTTGATGTGTTATTCGC 59.257 47.619 0.00 0.00 0.00 4.70
613 643 4.155826 TCTTTGGGCTTGATGTGTTATTCG 59.844 41.667 0.00 0.00 0.00 3.34
614 644 5.643379 TCTTTGGGCTTGATGTGTTATTC 57.357 39.130 0.00 0.00 0.00 1.75
615 645 7.716799 TTATCTTTGGGCTTGATGTGTTATT 57.283 32.000 0.00 0.00 0.00 1.40
616 646 7.716799 TTTATCTTTGGGCTTGATGTGTTAT 57.283 32.000 0.00 0.00 0.00 1.89
617 647 7.014711 TGTTTTATCTTTGGGCTTGATGTGTTA 59.985 33.333 0.00 0.00 0.00 2.41
618 648 6.183360 TGTTTTATCTTTGGGCTTGATGTGTT 60.183 34.615 0.00 0.00 0.00 3.32
619 649 5.304101 TGTTTTATCTTTGGGCTTGATGTGT 59.696 36.000 0.00 0.00 0.00 3.72
620 650 5.782047 TGTTTTATCTTTGGGCTTGATGTG 58.218 37.500 0.00 0.00 0.00 3.21
621 651 6.267471 TCTTGTTTTATCTTTGGGCTTGATGT 59.733 34.615 0.00 0.00 0.00 3.06
622 652 6.690530 TCTTGTTTTATCTTTGGGCTTGATG 58.309 36.000 0.00 0.00 0.00 3.07
623 653 6.916360 TCTTGTTTTATCTTTGGGCTTGAT 57.084 33.333 0.00 0.00 0.00 2.57
624 654 6.549364 TCTTCTTGTTTTATCTTTGGGCTTGA 59.451 34.615 0.00 0.00 0.00 3.02
625 655 6.748132 TCTTCTTGTTTTATCTTTGGGCTTG 58.252 36.000 0.00 0.00 0.00 4.01
626 656 6.976934 TCTTCTTGTTTTATCTTTGGGCTT 57.023 33.333 0.00 0.00 0.00 4.35
627 657 6.323739 TGTTCTTCTTGTTTTATCTTTGGGCT 59.676 34.615 0.00 0.00 0.00 5.19
628 658 6.512297 TGTTCTTCTTGTTTTATCTTTGGGC 58.488 36.000 0.00 0.00 0.00 5.36
629 659 7.978975 TGTTGTTCTTCTTGTTTTATCTTTGGG 59.021 33.333 0.00 0.00 0.00 4.12
630 660 8.925161 TGTTGTTCTTCTTGTTTTATCTTTGG 57.075 30.769 0.00 0.00 0.00 3.28
631 661 9.787532 TCTGTTGTTCTTCTTGTTTTATCTTTG 57.212 29.630 0.00 0.00 0.00 2.77
633 663 9.396022 TCTCTGTTGTTCTTCTTGTTTTATCTT 57.604 29.630 0.00 0.00 0.00 2.40
634 664 8.964476 TCTCTGTTGTTCTTCTTGTTTTATCT 57.036 30.769 0.00 0.00 0.00 1.98
637 667 9.620660 GTTTTCTCTGTTGTTCTTCTTGTTTTA 57.379 29.630 0.00 0.00 0.00 1.52
638 668 8.360390 AGTTTTCTCTGTTGTTCTTCTTGTTTT 58.640 29.630 0.00 0.00 0.00 2.43
639 669 7.886338 AGTTTTCTCTGTTGTTCTTCTTGTTT 58.114 30.769 0.00 0.00 0.00 2.83
640 670 7.454260 AGTTTTCTCTGTTGTTCTTCTTGTT 57.546 32.000 0.00 0.00 0.00 2.83
641 671 7.454260 AAGTTTTCTCTGTTGTTCTTCTTGT 57.546 32.000 0.00 0.00 0.00 3.16
642 672 8.450964 TGTAAGTTTTCTCTGTTGTTCTTCTTG 58.549 33.333 0.00 0.00 0.00 3.02
643 673 8.561738 TGTAAGTTTTCTCTGTTGTTCTTCTT 57.438 30.769 0.00 0.00 0.00 2.52
644 674 8.561738 TTGTAAGTTTTCTCTGTTGTTCTTCT 57.438 30.769 0.00 0.00 0.00 2.85
645 675 9.439537 GATTGTAAGTTTTCTCTGTTGTTCTTC 57.560 33.333 0.00 0.00 0.00 2.87
646 676 8.406297 GGATTGTAAGTTTTCTCTGTTGTTCTT 58.594 33.333 0.00 0.00 0.00 2.52
647 677 7.013369 GGGATTGTAAGTTTTCTCTGTTGTTCT 59.987 37.037 0.00 0.00 0.00 3.01
648 678 7.013369 AGGGATTGTAAGTTTTCTCTGTTGTTC 59.987 37.037 0.00 0.00 0.00 3.18
649 679 6.833933 AGGGATTGTAAGTTTTCTCTGTTGTT 59.166 34.615 0.00 0.00 0.00 2.83
650 680 6.263168 CAGGGATTGTAAGTTTTCTCTGTTGT 59.737 38.462 0.00 0.00 33.04 3.32
651 681 6.263168 ACAGGGATTGTAAGTTTTCTCTGTTG 59.737 38.462 0.00 0.00 45.32 3.33
652 682 6.365520 ACAGGGATTGTAAGTTTTCTCTGTT 58.634 36.000 0.00 0.00 45.32 3.16
653 683 5.941788 ACAGGGATTGTAAGTTTTCTCTGT 58.058 37.500 0.00 0.00 43.38 3.41
654 684 5.412904 GGACAGGGATTGTAAGTTTTCTCTG 59.587 44.000 0.00 0.00 41.05 3.35
655 685 5.561679 GGACAGGGATTGTAAGTTTTCTCT 58.438 41.667 0.00 0.00 41.05 3.10
656 686 4.392138 CGGACAGGGATTGTAAGTTTTCTC 59.608 45.833 0.00 0.00 41.05 2.87
657 687 4.324267 CGGACAGGGATTGTAAGTTTTCT 58.676 43.478 0.00 0.00 41.05 2.52
658 688 3.119955 GCGGACAGGGATTGTAAGTTTTC 60.120 47.826 0.00 0.00 41.05 2.29
659 689 2.817844 GCGGACAGGGATTGTAAGTTTT 59.182 45.455 0.00 0.00 41.05 2.43
660 690 2.224670 TGCGGACAGGGATTGTAAGTTT 60.225 45.455 0.00 0.00 41.05 2.66
668 698 1.283613 TGGTTTATGCGGACAGGGATT 59.716 47.619 0.00 0.00 0.00 3.01
688 718 1.814248 GCCTTGGAACGTCAGGAAAGT 60.814 52.381 7.12 0.00 0.00 2.66
755 801 2.195922 GCGATTAATGCAGCCCTTTTG 58.804 47.619 0.00 0.00 0.00 2.44
779 826 1.589196 CGTAGTAGGCAAGCCGAGC 60.589 63.158 5.28 0.16 41.95 5.03
815 862 4.248058 GGGTGCACGGTGTATTATATACC 58.752 47.826 11.45 7.93 36.68 2.73
849 901 1.460267 GCGATCGACGTTCAGTTGTTG 60.460 52.381 21.57 0.00 44.60 3.33
1029 1145 2.840651 AGAAGTAGCACTAGCCATGGTT 59.159 45.455 14.67 10.52 43.56 3.67
1030 1146 2.169352 CAGAAGTAGCACTAGCCATGGT 59.831 50.000 14.67 2.69 43.56 3.55
1066 1182 3.565214 TGGGCTGCCACGAGGAAA 61.565 61.111 22.05 0.00 36.89 3.13
1234 1350 2.203294 GTGGCCGTGTTGAAGGGT 60.203 61.111 0.00 0.00 36.12 4.34
1276 1392 1.305465 TGTGCTTACCCGGAGCCTA 60.305 57.895 0.73 0.00 39.38 3.93
1301 1417 5.787494 AGGGAGCACAAGTATATATGGTGAT 59.213 40.000 12.73 8.13 0.00 3.06
1426 1546 3.610242 CCTGAAAGATTGAGAACGACTCG 59.390 47.826 0.00 0.00 42.33 4.18
1429 1549 2.416893 GCCCTGAAAGATTGAGAACGAC 59.583 50.000 0.00 0.00 34.07 4.34
1438 1558 0.693049 AGTCGTGGCCCTGAAAGATT 59.307 50.000 0.00 0.00 34.07 2.40
1510 1630 3.928779 ATCACCGATGCGCCCGAT 61.929 61.111 18.80 0.30 0.00 4.18
1704 1830 1.724582 GGTGCCGAACTTGTGCTTGT 61.725 55.000 0.00 0.00 0.00 3.16
1812 1938 0.663568 AGTGTAGAGCGTGACGTTGC 60.664 55.000 6.91 0.00 0.00 4.17
1898 2026 4.083590 GCCCGTACGTGGTGTAAAATTAAA 60.084 41.667 15.21 0.00 34.07 1.52
1899 2027 3.434984 GCCCGTACGTGGTGTAAAATTAA 59.565 43.478 15.21 0.00 34.07 1.40
1900 2028 2.999355 GCCCGTACGTGGTGTAAAATTA 59.001 45.455 15.21 0.00 34.07 1.40
1901 2029 1.805943 GCCCGTACGTGGTGTAAAATT 59.194 47.619 15.21 0.00 34.07 1.82
1902 2030 1.441738 GCCCGTACGTGGTGTAAAAT 58.558 50.000 15.21 0.00 34.07 1.82
2139 2281 4.566004 TGCACTATATTATGGAACGGAGC 58.434 43.478 0.00 0.00 0.00 4.70
2305 2636 7.803279 ACCAAGTTTATCGAGAAAACTCTTT 57.197 32.000 22.03 9.77 44.35 2.52
2317 2648 9.579610 CTTTGCAAATTTTAACCAAGTTTATCG 57.420 29.630 13.23 0.00 0.00 2.92
2387 2718 5.706447 AGAGATGCTTGTATACTACTCCCA 58.294 41.667 4.17 0.00 0.00 4.37
2580 2949 1.890876 ACAGCTCGGCACACAAATAA 58.109 45.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.