Multiple sequence alignment - TraesCS7D01G056500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G056500 chr7D 100.000 2747 0 0 1 2747 30247218 30249964 0.000000e+00 5073.0
1 TraesCS7D01G056500 chr7D 97.778 270 6 0 329 598 30263488 30263757 1.490000e-127 466.0
2 TraesCS7D01G056500 chr7D 89.796 49 5 0 282 330 193187994 193187946 2.280000e-06 63.9
3 TraesCS7D01G056500 chr2D 97.440 2422 55 4 329 2747 614385461 614387878 0.000000e+00 4122.0
4 TraesCS7D01G056500 chr2D 94.316 1038 34 9 1718 2747 174419913 174420933 0.000000e+00 1567.0
5 TraesCS7D01G056500 chr2D 91.015 1113 64 9 496 1604 174418566 174419646 0.000000e+00 1469.0
6 TraesCS7D01G056500 chr2D 92.857 56 3 1 282 337 624182576 624182522 2.270000e-11 80.5
7 TraesCS7D01G056500 chr1D 97.316 2422 58 5 328 2747 346185183 346187599 0.000000e+00 4106.0
8 TraesCS7D01G056500 chr1D 96.902 2421 44 7 328 2744 408875172 408877565 0.000000e+00 4026.0
9 TraesCS7D01G056500 chr1D 97.717 920 21 0 714 1633 1828904 1829823 0.000000e+00 1583.0
10 TraesCS7D01G056500 chr1D 98.686 837 8 2 1913 2747 1829822 1830657 0.000000e+00 1482.0
11 TraesCS7D01G056500 chr1D 92.775 346 11 1 328 673 1828575 1828906 3.180000e-134 488.0
12 TraesCS7D01G056500 chr3B 90.145 2212 182 18 329 2519 93620928 93618732 0.000000e+00 2844.0
13 TraesCS7D01G056500 chr7B 90.153 1696 148 13 329 2015 679491800 679490115 0.000000e+00 2189.0
14 TraesCS7D01G056500 chr5A 88.214 1697 155 20 329 2014 651717720 651719382 0.000000e+00 1984.0
15 TraesCS7D01G056500 chr3D 94.278 1066 43 10 1330 2387 19159829 19160884 0.000000e+00 1615.0
16 TraesCS7D01G056500 chr1B 88.668 1306 134 10 324 1624 40430046 40428750 0.000000e+00 1580.0
17 TraesCS7D01G056500 chr1B 95.220 795 27 6 1959 2747 40428192 40427403 0.000000e+00 1247.0
18 TraesCS7D01G056500 chr1B 91.756 279 19 2 1690 1966 40428716 40428440 4.290000e-103 385.0
19 TraesCS7D01G056500 chr1A 95.122 820 29 6 1931 2744 247798369 247799183 0.000000e+00 1282.0
20 TraesCS7D01G056500 chr1A 94.775 823 32 6 1931 2747 579181530 579180713 0.000000e+00 1271.0
21 TraesCS7D01G056500 chr1A 90.000 50 5 0 279 328 449691509 449691558 6.350000e-07 65.8
22 TraesCS7D01G056500 chrUn 94.393 321 17 1 329 649 364048990 364049309 2.460000e-135 492.0
23 TraesCS7D01G056500 chrUn 92.000 50 4 0 279 328 7153462 7153511 1.360000e-08 71.3
24 TraesCS7D01G056500 chr5D 90.196 51 5 0 278 328 484698271 484698221 1.770000e-07 67.6
25 TraesCS7D01G056500 chr5D 93.182 44 3 0 285 328 342947094 342947051 6.350000e-07 65.8
26 TraesCS7D01G056500 chr5D 93.182 44 3 0 285 328 393909999 393909956 6.350000e-07 65.8
27 TraesCS7D01G056500 chr6D 91.489 47 4 0 282 328 111564329 111564375 6.350000e-07 65.8
28 TraesCS7D01G056500 chr7A 89.796 49 5 0 282 330 202714139 202714091 2.280000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G056500 chr7D 30247218 30249964 2746 False 5073.000000 5073 100.000000 1 2747 1 chr7D.!!$F1 2746
1 TraesCS7D01G056500 chr2D 614385461 614387878 2417 False 4122.000000 4122 97.440000 329 2747 1 chr2D.!!$F1 2418
2 TraesCS7D01G056500 chr2D 174418566 174420933 2367 False 1518.000000 1567 92.665500 496 2747 2 chr2D.!!$F2 2251
3 TraesCS7D01G056500 chr1D 346185183 346187599 2416 False 4106.000000 4106 97.316000 328 2747 1 chr1D.!!$F1 2419
4 TraesCS7D01G056500 chr1D 408875172 408877565 2393 False 4026.000000 4026 96.902000 328 2744 1 chr1D.!!$F2 2416
5 TraesCS7D01G056500 chr1D 1828575 1830657 2082 False 1184.333333 1583 96.392667 328 2747 3 chr1D.!!$F3 2419
6 TraesCS7D01G056500 chr3B 93618732 93620928 2196 True 2844.000000 2844 90.145000 329 2519 1 chr3B.!!$R1 2190
7 TraesCS7D01G056500 chr7B 679490115 679491800 1685 True 2189.000000 2189 90.153000 329 2015 1 chr7B.!!$R1 1686
8 TraesCS7D01G056500 chr5A 651717720 651719382 1662 False 1984.000000 1984 88.214000 329 2014 1 chr5A.!!$F1 1685
9 TraesCS7D01G056500 chr3D 19159829 19160884 1055 False 1615.000000 1615 94.278000 1330 2387 1 chr3D.!!$F1 1057
10 TraesCS7D01G056500 chr1B 40427403 40430046 2643 True 1070.666667 1580 91.881333 324 2747 3 chr1B.!!$R1 2423
11 TraesCS7D01G056500 chr1A 247798369 247799183 814 False 1282.000000 1282 95.122000 1931 2744 1 chr1A.!!$F1 813
12 TraesCS7D01G056500 chr1A 579180713 579181530 817 True 1271.000000 1271 94.775000 1931 2747 1 chr1A.!!$R1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.107654 GTTGCTATCCCGGTTGAGCT 60.108 55.0 16.79 0.00 35.89 4.09 F
29 30 0.178068 TTGCTATCCCGGTTGAGCTC 59.822 55.0 6.82 6.82 35.89 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1191 1225 1.002251 GAGAAGTAGCGATCTGGGTCG 60.002 57.143 0.00 0.0 44.14 4.79 R
1890 2082 2.903547 CGTGGCCTGTTTTGGTCCG 61.904 63.158 3.32 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.549064 TGGATGATGTTGCTATCCCG 57.451 50.000 0.00 0.00 39.68 5.14
21 22 1.072173 TGGATGATGTTGCTATCCCGG 59.928 52.381 0.00 0.00 39.68 5.73
22 23 1.072331 GGATGATGTTGCTATCCCGGT 59.928 52.381 0.00 0.00 35.43 5.28
23 24 2.487265 GGATGATGTTGCTATCCCGGTT 60.487 50.000 0.00 0.00 35.43 4.44
24 25 2.036958 TGATGTTGCTATCCCGGTTG 57.963 50.000 0.00 0.00 0.00 3.77
25 26 1.557371 TGATGTTGCTATCCCGGTTGA 59.443 47.619 0.00 0.00 0.00 3.18
26 27 2.213499 GATGTTGCTATCCCGGTTGAG 58.787 52.381 0.00 0.00 0.00 3.02
27 28 0.392461 TGTTGCTATCCCGGTTGAGC 60.392 55.000 10.86 10.86 35.43 4.26
28 29 0.107654 GTTGCTATCCCGGTTGAGCT 60.108 55.000 16.79 0.00 35.89 4.09
29 30 0.178068 TTGCTATCCCGGTTGAGCTC 59.822 55.000 6.82 6.82 35.89 4.09
30 31 1.069935 GCTATCCCGGTTGAGCTCC 59.930 63.158 12.15 0.00 32.04 4.70
31 32 1.749033 CTATCCCGGTTGAGCTCCC 59.251 63.158 12.15 4.99 0.00 4.30
32 33 1.002403 TATCCCGGTTGAGCTCCCA 59.998 57.895 12.15 0.00 0.00 4.37
33 34 1.335132 TATCCCGGTTGAGCTCCCAC 61.335 60.000 12.15 7.95 0.00 4.61
34 35 3.636231 CCCGGTTGAGCTCCCACA 61.636 66.667 12.15 0.00 0.00 4.17
35 36 2.046892 CCGGTTGAGCTCCCACAG 60.047 66.667 12.15 8.66 0.00 3.66
36 37 2.046892 CGGTTGAGCTCCCACAGG 60.047 66.667 12.15 0.58 0.00 4.00
37 38 2.352805 GGTTGAGCTCCCACAGGG 59.647 66.667 12.15 0.00 46.11 4.45
39 40 1.003233 GTTGAGCTCCCACAGGGAC 60.003 63.158 12.15 0.00 46.17 4.46
40 41 1.461268 TTGAGCTCCCACAGGGACA 60.461 57.895 12.15 0.00 46.17 4.02
41 42 1.768684 TTGAGCTCCCACAGGGACAC 61.769 60.000 12.15 0.00 46.17 3.67
42 43 2.122413 AGCTCCCACAGGGACACA 60.122 61.111 0.00 0.00 46.17 3.72
43 44 2.032681 GCTCCCACAGGGACACAC 59.967 66.667 0.00 0.00 46.17 3.82
44 45 2.343758 CTCCCACAGGGACACACG 59.656 66.667 0.00 0.00 46.17 4.49
45 46 2.445085 TCCCACAGGGACACACGT 60.445 61.111 0.00 0.00 46.17 4.49
46 47 1.152504 TCCCACAGGGACACACGTA 60.153 57.895 0.00 0.00 46.17 3.57
47 48 0.759812 TCCCACAGGGACACACGTAA 60.760 55.000 0.00 0.00 46.17 3.18
48 49 2.105460 TCCCACAGGGACACACGTAAT 61.105 52.381 0.00 0.00 46.17 1.89
49 50 1.438651 CCACAGGGACACACGTAATG 58.561 55.000 0.00 0.00 35.59 1.90
50 51 0.796312 CACAGGGACACACGTAATGC 59.204 55.000 0.00 0.00 0.00 3.56
51 52 0.394938 ACAGGGACACACGTAATGCA 59.605 50.000 0.00 0.00 0.00 3.96
52 53 0.796312 CAGGGACACACGTAATGCAC 59.204 55.000 0.00 0.00 0.00 4.57
76 77 3.334751 CGGCAGACAACGCGACAA 61.335 61.111 15.93 0.00 0.00 3.18
77 78 2.876879 CGGCAGACAACGCGACAAA 61.877 57.895 15.93 0.00 0.00 2.83
78 79 1.353804 GGCAGACAACGCGACAAAA 59.646 52.632 15.93 0.00 0.00 2.44
79 80 0.248296 GGCAGACAACGCGACAAAAA 60.248 50.000 15.93 0.00 0.00 1.94
80 81 1.599419 GGCAGACAACGCGACAAAAAT 60.599 47.619 15.93 0.00 0.00 1.82
81 82 2.116366 GCAGACAACGCGACAAAAATT 58.884 42.857 15.93 0.00 0.00 1.82
82 83 3.293262 GCAGACAACGCGACAAAAATTA 58.707 40.909 15.93 0.00 0.00 1.40
83 84 3.357823 GCAGACAACGCGACAAAAATTAG 59.642 43.478 15.93 0.00 0.00 1.73
84 85 4.523813 CAGACAACGCGACAAAAATTAGT 58.476 39.130 15.93 0.00 0.00 2.24
85 86 4.607235 CAGACAACGCGACAAAAATTAGTC 59.393 41.667 15.93 5.60 0.00 2.59
86 87 4.271533 AGACAACGCGACAAAAATTAGTCA 59.728 37.500 15.93 0.00 34.48 3.41
87 88 4.523813 ACAACGCGACAAAAATTAGTCAG 58.476 39.130 15.93 3.06 34.48 3.51
88 89 4.034742 ACAACGCGACAAAAATTAGTCAGT 59.965 37.500 15.93 3.53 34.48 3.41
89 90 4.806342 ACGCGACAAAAATTAGTCAGTT 57.194 36.364 15.93 0.00 34.48 3.16
90 91 4.523813 ACGCGACAAAAATTAGTCAGTTG 58.476 39.130 15.93 0.00 34.48 3.16
91 92 4.271533 ACGCGACAAAAATTAGTCAGTTGA 59.728 37.500 15.93 0.00 34.48 3.18
92 93 4.840772 CGCGACAAAAATTAGTCAGTTGAG 59.159 41.667 0.00 0.00 34.48 3.02
93 94 5.558273 CGCGACAAAAATTAGTCAGTTGAGT 60.558 40.000 0.00 0.00 34.48 3.41
94 95 5.621228 GCGACAAAAATTAGTCAGTTGAGTG 59.379 40.000 0.00 0.00 34.48 3.51
95 96 6.136071 CGACAAAAATTAGTCAGTTGAGTGG 58.864 40.000 0.00 0.00 34.48 4.00
96 97 6.238374 CGACAAAAATTAGTCAGTTGAGTGGT 60.238 38.462 0.00 0.00 34.48 4.16
97 98 7.042321 CGACAAAAATTAGTCAGTTGAGTGGTA 60.042 37.037 0.00 0.00 34.48 3.25
98 99 8.514330 ACAAAAATTAGTCAGTTGAGTGGTAA 57.486 30.769 0.00 0.00 0.00 2.85
99 100 8.403236 ACAAAAATTAGTCAGTTGAGTGGTAAC 58.597 33.333 0.00 0.00 0.00 2.50
100 101 7.506328 AAAATTAGTCAGTTGAGTGGTAACC 57.494 36.000 0.00 0.00 0.00 2.85
101 102 6.435292 AATTAGTCAGTTGAGTGGTAACCT 57.565 37.500 0.00 0.00 0.00 3.50
102 103 5.881923 TTAGTCAGTTGAGTGGTAACCTT 57.118 39.130 0.00 0.00 0.00 3.50
103 104 4.772886 AGTCAGTTGAGTGGTAACCTTT 57.227 40.909 0.00 0.00 0.00 3.11
104 105 5.881923 AGTCAGTTGAGTGGTAACCTTTA 57.118 39.130 0.00 0.00 0.00 1.85
105 106 6.243216 AGTCAGTTGAGTGGTAACCTTTAA 57.757 37.500 0.00 0.00 0.00 1.52
106 107 6.655930 AGTCAGTTGAGTGGTAACCTTTAAA 58.344 36.000 0.00 0.00 0.00 1.52
107 108 7.114095 AGTCAGTTGAGTGGTAACCTTTAAAA 58.886 34.615 0.00 0.00 0.00 1.52
108 109 7.612633 AGTCAGTTGAGTGGTAACCTTTAAAAA 59.387 33.333 0.00 0.00 0.00 1.94
154 155 8.632679 ACAATATCACATCAGACTTTTTGTTGT 58.367 29.630 0.00 0.00 0.00 3.32
155 156 9.467258 CAATATCACATCAGACTTTTTGTTGTT 57.533 29.630 0.00 0.00 0.00 2.83
157 158 7.992180 ATCACATCAGACTTTTTGTTGTTTC 57.008 32.000 0.00 0.00 0.00 2.78
158 159 6.918626 TCACATCAGACTTTTTGTTGTTTCA 58.081 32.000 0.00 0.00 0.00 2.69
159 160 7.374272 TCACATCAGACTTTTTGTTGTTTCAA 58.626 30.769 0.00 0.00 0.00 2.69
160 161 7.869937 TCACATCAGACTTTTTGTTGTTTCAAA 59.130 29.630 0.00 0.00 35.83 2.69
161 162 8.494347 CACATCAGACTTTTTGTTGTTTCAAAA 58.506 29.630 0.00 0.00 42.85 2.44
162 163 9.218440 ACATCAGACTTTTTGTTGTTTCAAAAT 57.782 25.926 5.63 0.00 43.60 1.82
242 243 9.476761 GTGAAACAAAGATGAAAATTGTCAAAC 57.523 29.630 1.55 0.50 36.33 2.93
243 244 9.212641 TGAAACAAAGATGAAAATTGTCAAACA 57.787 25.926 1.55 0.00 36.33 2.83
244 245 9.476761 GAAACAAAGATGAAAATTGTCAAACAC 57.523 29.630 1.55 0.00 36.33 3.32
245 246 8.545229 AACAAAGATGAAAATTGTCAAACACA 57.455 26.923 1.55 0.00 36.33 3.72
246 247 7.962917 ACAAAGATGAAAATTGTCAAACACAC 58.037 30.769 1.55 0.00 33.41 3.82
247 248 7.601886 ACAAAGATGAAAATTGTCAAACACACA 59.398 29.630 1.55 0.00 33.41 3.72
248 249 7.760131 AAGATGAAAATTGTCAAACACACAG 57.240 32.000 1.55 0.00 33.41 3.66
249 250 7.099266 AGATGAAAATTGTCAAACACACAGA 57.901 32.000 1.55 0.00 33.41 3.41
250 251 6.974622 AGATGAAAATTGTCAAACACACAGAC 59.025 34.615 1.55 0.00 33.41 3.51
251 252 6.018589 TGAAAATTGTCAAACACACAGACA 57.981 33.333 0.00 0.00 40.24 3.41
257 258 5.478233 TGTCAAACACACAGACAACATAC 57.522 39.130 0.00 0.00 39.15 2.39
258 259 4.334203 TGTCAAACACACAGACAACATACC 59.666 41.667 0.00 0.00 39.15 2.73
259 260 4.334203 GTCAAACACACAGACAACATACCA 59.666 41.667 0.00 0.00 32.68 3.25
260 261 4.334203 TCAAACACACAGACAACATACCAC 59.666 41.667 0.00 0.00 0.00 4.16
261 262 2.479837 ACACACAGACAACATACCACG 58.520 47.619 0.00 0.00 0.00 4.94
262 263 2.101750 ACACACAGACAACATACCACGA 59.898 45.455 0.00 0.00 0.00 4.35
263 264 3.127589 CACACAGACAACATACCACGAA 58.872 45.455 0.00 0.00 0.00 3.85
264 265 3.745975 CACACAGACAACATACCACGAAT 59.254 43.478 0.00 0.00 0.00 3.34
265 266 3.994392 ACACAGACAACATACCACGAATC 59.006 43.478 0.00 0.00 0.00 2.52
266 267 4.245660 CACAGACAACATACCACGAATCT 58.754 43.478 0.00 0.00 0.00 2.40
267 268 4.327357 CACAGACAACATACCACGAATCTC 59.673 45.833 0.00 0.00 0.00 2.75
268 269 4.021456 ACAGACAACATACCACGAATCTCA 60.021 41.667 0.00 0.00 0.00 3.27
269 270 4.929211 CAGACAACATACCACGAATCTCAA 59.071 41.667 0.00 0.00 0.00 3.02
270 271 5.062683 CAGACAACATACCACGAATCTCAAG 59.937 44.000 0.00 0.00 0.00 3.02
271 272 5.047306 AGACAACATACCACGAATCTCAAGA 60.047 40.000 0.00 0.00 0.00 3.02
272 273 5.734720 ACAACATACCACGAATCTCAAGAT 58.265 37.500 0.00 0.00 36.07 2.40
273 274 5.812642 ACAACATACCACGAATCTCAAGATC 59.187 40.000 0.00 0.00 32.75 2.75
274 275 5.598416 ACATACCACGAATCTCAAGATCA 57.402 39.130 0.00 0.00 32.75 2.92
275 276 5.595885 ACATACCACGAATCTCAAGATCAG 58.404 41.667 0.00 0.00 32.75 2.90
276 277 5.360999 ACATACCACGAATCTCAAGATCAGA 59.639 40.000 0.00 0.00 32.75 3.27
277 278 4.116747 ACCACGAATCTCAAGATCAGAC 57.883 45.455 0.00 0.00 32.75 3.51
278 279 3.511540 ACCACGAATCTCAAGATCAGACA 59.488 43.478 0.00 0.00 32.75 3.41
279 280 3.862267 CCACGAATCTCAAGATCAGACAC 59.138 47.826 0.00 0.00 32.75 3.67
280 281 4.488879 CACGAATCTCAAGATCAGACACA 58.511 43.478 0.00 0.00 32.75 3.72
281 282 5.107824 CACGAATCTCAAGATCAGACACAT 58.892 41.667 0.00 0.00 32.75 3.21
282 283 5.005490 CACGAATCTCAAGATCAGACACATG 59.995 44.000 0.00 0.00 32.75 3.21
283 284 4.025896 CGAATCTCAAGATCAGACACATGC 60.026 45.833 0.00 0.00 32.75 4.06
284 285 2.884827 TCTCAAGATCAGACACATGCG 58.115 47.619 0.00 0.00 0.00 4.73
285 286 2.493278 TCTCAAGATCAGACACATGCGA 59.507 45.455 0.00 0.00 0.00 5.10
286 287 3.056607 TCTCAAGATCAGACACATGCGAA 60.057 43.478 0.00 0.00 0.00 4.70
287 288 2.995939 TCAAGATCAGACACATGCGAAC 59.004 45.455 0.00 0.00 0.00 3.95
288 289 2.998670 CAAGATCAGACACATGCGAACT 59.001 45.455 0.00 0.00 0.00 3.01
289 290 4.082245 TCAAGATCAGACACATGCGAACTA 60.082 41.667 0.00 0.00 0.00 2.24
290 291 4.456280 AGATCAGACACATGCGAACTAA 57.544 40.909 0.00 0.00 0.00 2.24
291 292 4.428209 AGATCAGACACATGCGAACTAAG 58.572 43.478 0.00 0.00 0.00 2.18
292 293 2.337583 TCAGACACATGCGAACTAAGC 58.662 47.619 0.00 0.00 0.00 3.09
301 302 3.165058 TGCGAACTAAGCATAGGTCAG 57.835 47.619 14.00 7.88 44.68 3.51
302 303 2.758423 TGCGAACTAAGCATAGGTCAGA 59.242 45.455 14.00 0.00 44.68 3.27
303 304 3.384789 TGCGAACTAAGCATAGGTCAGAT 59.615 43.478 14.00 0.00 44.68 2.90
304 305 3.738282 GCGAACTAAGCATAGGTCAGATG 59.262 47.826 14.00 0.00 44.68 2.90
305 306 4.302455 CGAACTAAGCATAGGTCAGATGG 58.698 47.826 14.00 0.00 44.68 3.51
306 307 4.202161 CGAACTAAGCATAGGTCAGATGGT 60.202 45.833 14.00 0.00 44.68 3.55
307 308 5.675538 GAACTAAGCATAGGTCAGATGGTT 58.324 41.667 9.11 5.51 44.01 3.67
308 309 6.461092 CGAACTAAGCATAGGTCAGATGGTTA 60.461 42.308 14.00 6.98 44.68 2.85
310 311 4.696479 AAGCATAGGTCAGATGGTTAGG 57.304 45.455 0.00 0.00 41.83 2.69
311 312 3.658725 AGCATAGGTCAGATGGTTAGGT 58.341 45.455 0.00 0.00 31.04 3.08
312 313 4.040755 AGCATAGGTCAGATGGTTAGGTT 58.959 43.478 0.00 0.00 31.04 3.50
313 314 4.101741 AGCATAGGTCAGATGGTTAGGTTC 59.898 45.833 0.00 0.00 31.04 3.62
314 315 4.743955 GCATAGGTCAGATGGTTAGGTTCC 60.744 50.000 0.00 0.00 0.00 3.62
315 316 3.207044 AGGTCAGATGGTTAGGTTCCT 57.793 47.619 0.00 0.00 0.00 3.36
316 317 3.532102 AGGTCAGATGGTTAGGTTCCTT 58.468 45.455 0.00 0.00 0.00 3.36
317 318 3.264450 AGGTCAGATGGTTAGGTTCCTTG 59.736 47.826 0.00 0.00 0.00 3.61
318 319 3.009143 GGTCAGATGGTTAGGTTCCTTGT 59.991 47.826 0.00 0.00 0.00 3.16
319 320 4.003648 GTCAGATGGTTAGGTTCCTTGTG 58.996 47.826 0.00 0.00 0.00 3.33
320 321 3.009033 TCAGATGGTTAGGTTCCTTGTGG 59.991 47.826 0.00 0.00 0.00 4.17
321 322 2.986728 AGATGGTTAGGTTCCTTGTGGT 59.013 45.455 0.00 0.00 34.23 4.16
322 323 2.649531 TGGTTAGGTTCCTTGTGGTG 57.350 50.000 0.00 0.00 34.23 4.17
323 324 1.144093 TGGTTAGGTTCCTTGTGGTGG 59.856 52.381 0.00 0.00 34.23 4.61
324 325 1.422402 GGTTAGGTTCCTTGTGGTGGA 59.578 52.381 0.00 0.00 34.23 4.02
325 326 2.158579 GGTTAGGTTCCTTGTGGTGGAA 60.159 50.000 0.00 0.00 40.85 3.53
415 428 1.200519 CCGGTGGTTAGAATCCTGGA 58.799 55.000 0.00 0.00 0.00 3.86
606 638 5.356426 TCTTGTTTCTCTTCACGTCATCAA 58.644 37.500 0.00 0.00 0.00 2.57
744 778 1.529865 CGTTTTCCTCACCGGACTTTC 59.470 52.381 9.46 0.00 42.97 2.62
977 1011 2.423898 CGAGTACCAGGGCGGATGT 61.424 63.158 0.00 0.00 38.63 3.06
1140 1174 2.064581 GCCTCCTCCACCGGTGTAT 61.065 63.158 31.80 0.00 0.00 2.29
1523 1560 1.671901 GAAGTGGAGGAGGAGGAGCG 61.672 65.000 0.00 0.00 0.00 5.03
1624 1661 4.087892 CTGTCCGCCCCACTGGAG 62.088 72.222 0.00 0.00 34.21 3.86
1652 1689 3.691342 CACTTGGTCGCCCGAGGA 61.691 66.667 4.45 0.00 45.52 3.71
1656 1693 2.450479 CTTGGTCGCCCGAGGAACTT 62.450 60.000 0.00 0.00 41.55 2.66
1848 2040 1.006043 TCTGTCCTCTGGTCGATCCTT 59.994 52.381 0.00 0.00 37.07 3.36
2016 2485 8.497910 TTCCTAGCTGAAGATCTATATGGTTT 57.502 34.615 0.00 0.00 0.00 3.27
2567 3044 0.798776 GTCTCGGTCCTTGCATTGTG 59.201 55.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.290514 CCGGGATAGCAACATCATCCAT 60.291 50.000 0.00 0.00 40.09 3.41
1 2 1.072173 CCGGGATAGCAACATCATCCA 59.928 52.381 0.00 0.00 40.09 3.41
2 3 1.072331 ACCGGGATAGCAACATCATCC 59.928 52.381 6.32 0.00 38.00 3.51
3 4 2.549754 CAACCGGGATAGCAACATCATC 59.450 50.000 6.32 0.00 0.00 2.92
4 5 2.172505 TCAACCGGGATAGCAACATCAT 59.827 45.455 6.32 0.00 0.00 2.45
5 6 1.557371 TCAACCGGGATAGCAACATCA 59.443 47.619 6.32 0.00 0.00 3.07
6 7 2.213499 CTCAACCGGGATAGCAACATC 58.787 52.381 6.32 0.00 0.00 3.06
7 8 1.747206 GCTCAACCGGGATAGCAACAT 60.747 52.381 16.52 0.00 35.05 2.71
8 9 0.392461 GCTCAACCGGGATAGCAACA 60.392 55.000 16.52 0.00 35.05 3.33
9 10 0.107654 AGCTCAACCGGGATAGCAAC 60.108 55.000 21.50 0.00 37.44 4.17
10 11 0.178068 GAGCTCAACCGGGATAGCAA 59.822 55.000 21.50 0.00 37.44 3.91
11 12 1.686325 GGAGCTCAACCGGGATAGCA 61.686 60.000 21.50 0.00 37.44 3.49
12 13 1.069935 GGAGCTCAACCGGGATAGC 59.930 63.158 17.19 11.39 35.16 2.97
13 14 1.048724 TGGGAGCTCAACCGGGATAG 61.049 60.000 17.19 0.00 0.00 2.08
14 15 1.002403 TGGGAGCTCAACCGGGATA 59.998 57.895 17.19 0.00 0.00 2.59
15 16 2.285368 TGGGAGCTCAACCGGGAT 60.285 61.111 17.19 0.00 0.00 3.85
16 17 3.319198 GTGGGAGCTCAACCGGGA 61.319 66.667 17.19 0.00 0.00 5.14
17 18 3.612247 CTGTGGGAGCTCAACCGGG 62.612 68.421 17.19 0.00 0.00 5.73
18 19 2.046892 CTGTGGGAGCTCAACCGG 60.047 66.667 17.19 0.00 0.00 5.28
19 20 2.046892 CCTGTGGGAGCTCAACCG 60.047 66.667 17.19 9.39 33.58 4.44
29 30 0.323629 ATTACGTGTGTCCCTGTGGG 59.676 55.000 0.00 0.00 46.11 4.61
30 31 1.438651 CATTACGTGTGTCCCTGTGG 58.561 55.000 0.00 0.00 0.00 4.17
31 32 0.796312 GCATTACGTGTGTCCCTGTG 59.204 55.000 0.00 0.00 0.00 3.66
32 33 0.394938 TGCATTACGTGTGTCCCTGT 59.605 50.000 0.00 0.00 0.00 4.00
33 34 0.796312 GTGCATTACGTGTGTCCCTG 59.204 55.000 0.00 0.00 0.00 4.45
34 35 3.226884 GTGCATTACGTGTGTCCCT 57.773 52.632 0.00 0.00 0.00 4.20
59 60 2.368131 TTTTGTCGCGTTGTCTGCCG 62.368 55.000 5.77 0.00 0.00 5.69
60 61 0.248296 TTTTTGTCGCGTTGTCTGCC 60.248 50.000 5.77 0.00 0.00 4.85
61 62 1.753956 ATTTTTGTCGCGTTGTCTGC 58.246 45.000 5.77 0.00 0.00 4.26
62 63 4.523813 ACTAATTTTTGTCGCGTTGTCTG 58.476 39.130 5.77 0.00 0.00 3.51
63 64 4.271533 TGACTAATTTTTGTCGCGTTGTCT 59.728 37.500 5.77 0.00 36.03 3.41
64 65 4.520078 TGACTAATTTTTGTCGCGTTGTC 58.480 39.130 5.77 1.24 36.03 3.18
65 66 4.034742 ACTGACTAATTTTTGTCGCGTTGT 59.965 37.500 5.77 0.00 36.03 3.32
66 67 4.523813 ACTGACTAATTTTTGTCGCGTTG 58.476 39.130 5.77 0.00 36.03 4.10
67 68 4.806342 ACTGACTAATTTTTGTCGCGTT 57.194 36.364 5.77 0.00 36.03 4.84
68 69 4.271533 TCAACTGACTAATTTTTGTCGCGT 59.728 37.500 5.77 0.00 36.03 6.01
69 70 4.768145 TCAACTGACTAATTTTTGTCGCG 58.232 39.130 0.00 0.00 36.03 5.87
70 71 5.621228 CACTCAACTGACTAATTTTTGTCGC 59.379 40.000 0.00 0.00 36.03 5.19
71 72 6.136071 CCACTCAACTGACTAATTTTTGTCG 58.864 40.000 0.00 0.00 36.03 4.35
72 73 7.027778 ACCACTCAACTGACTAATTTTTGTC 57.972 36.000 0.00 0.00 34.28 3.18
73 74 8.403236 GTTACCACTCAACTGACTAATTTTTGT 58.597 33.333 0.00 0.00 0.00 2.83
74 75 7.860872 GGTTACCACTCAACTGACTAATTTTTG 59.139 37.037 0.00 0.00 0.00 2.44
75 76 7.778382 AGGTTACCACTCAACTGACTAATTTTT 59.222 33.333 3.51 0.00 0.00 1.94
76 77 7.287810 AGGTTACCACTCAACTGACTAATTTT 58.712 34.615 3.51 0.00 0.00 1.82
77 78 6.838382 AGGTTACCACTCAACTGACTAATTT 58.162 36.000 3.51 0.00 0.00 1.82
78 79 6.435292 AGGTTACCACTCAACTGACTAATT 57.565 37.500 3.51 0.00 0.00 1.40
79 80 6.435292 AAGGTTACCACTCAACTGACTAAT 57.565 37.500 3.51 0.00 0.00 1.73
80 81 5.881923 AAGGTTACCACTCAACTGACTAA 57.118 39.130 3.51 0.00 0.00 2.24
81 82 5.881923 AAAGGTTACCACTCAACTGACTA 57.118 39.130 3.51 0.00 0.00 2.59
82 83 4.772886 AAAGGTTACCACTCAACTGACT 57.227 40.909 3.51 0.00 0.00 3.41
83 84 6.930667 TTTAAAGGTTACCACTCAACTGAC 57.069 37.500 3.51 0.00 0.00 3.51
84 85 7.941431 TTTTTAAAGGTTACCACTCAACTGA 57.059 32.000 3.51 0.00 0.00 3.41
128 129 8.632679 ACAACAAAAAGTCTGATGTGATATTGT 58.367 29.630 0.00 0.00 29.64 2.71
129 130 9.467258 AACAACAAAAAGTCTGATGTGATATTG 57.533 29.630 0.00 0.00 31.05 1.90
131 132 9.683069 GAAACAACAAAAAGTCTGATGTGATAT 57.317 29.630 0.00 0.00 31.05 1.63
132 133 8.681806 TGAAACAACAAAAAGTCTGATGTGATA 58.318 29.630 0.00 0.00 31.05 2.15
133 134 7.546358 TGAAACAACAAAAAGTCTGATGTGAT 58.454 30.769 0.00 0.00 31.05 3.06
134 135 6.918626 TGAAACAACAAAAAGTCTGATGTGA 58.081 32.000 0.00 0.00 31.05 3.58
135 136 7.579589 TTGAAACAACAAAAAGTCTGATGTG 57.420 32.000 0.00 0.00 31.05 3.21
136 137 8.600449 TTTTGAAACAACAAAAAGTCTGATGT 57.400 26.923 0.00 0.00 43.59 3.06
208 209 8.545229 TTTTCATCTTTGTTTCACATTGTTGT 57.455 26.923 0.00 0.00 36.15 3.32
209 210 9.991388 AATTTTCATCTTTGTTTCACATTGTTG 57.009 25.926 0.00 0.00 0.00 3.33
210 211 9.991388 CAATTTTCATCTTTGTTTCACATTGTT 57.009 25.926 0.00 0.00 0.00 2.83
211 212 9.165035 ACAATTTTCATCTTTGTTTCACATTGT 57.835 25.926 0.00 0.00 29.60 2.71
212 213 9.640974 GACAATTTTCATCTTTGTTTCACATTG 57.359 29.630 0.00 0.00 33.92 2.82
213 214 9.381033 TGACAATTTTCATCTTTGTTTCACATT 57.619 25.926 0.00 0.00 33.92 2.71
214 215 8.945481 TGACAATTTTCATCTTTGTTTCACAT 57.055 26.923 0.00 0.00 33.92 3.21
215 216 8.768957 TTGACAATTTTCATCTTTGTTTCACA 57.231 26.923 0.00 0.00 33.92 3.58
216 217 9.476761 GTTTGACAATTTTCATCTTTGTTTCAC 57.523 29.630 0.00 0.00 33.92 3.18
217 218 9.212641 TGTTTGACAATTTTCATCTTTGTTTCA 57.787 25.926 0.00 0.00 33.92 2.69
218 219 9.476761 GTGTTTGACAATTTTCATCTTTGTTTC 57.523 29.630 0.00 0.00 33.92 2.78
219 220 8.997323 TGTGTTTGACAATTTTCATCTTTGTTT 58.003 25.926 0.00 0.00 33.92 2.83
220 221 8.442384 GTGTGTTTGACAATTTTCATCTTTGTT 58.558 29.630 0.00 0.00 35.91 2.83
221 222 7.601886 TGTGTGTTTGACAATTTTCATCTTTGT 59.398 29.630 0.00 0.00 35.91 2.83
222 223 7.961855 TGTGTGTTTGACAATTTTCATCTTTG 58.038 30.769 0.00 0.00 35.91 2.77
223 224 8.034215 TCTGTGTGTTTGACAATTTTCATCTTT 58.966 29.630 0.00 0.00 35.91 2.52
224 225 7.489113 GTCTGTGTGTTTGACAATTTTCATCTT 59.511 33.333 0.00 0.00 35.91 2.40
225 226 6.974622 GTCTGTGTGTTTGACAATTTTCATCT 59.025 34.615 0.00 0.00 35.91 2.90
226 227 6.751425 TGTCTGTGTGTTTGACAATTTTCATC 59.249 34.615 0.00 0.00 37.71 2.92
227 228 6.629128 TGTCTGTGTGTTTGACAATTTTCAT 58.371 32.000 0.00 0.00 37.71 2.57
228 229 6.018589 TGTCTGTGTGTTTGACAATTTTCA 57.981 33.333 0.00 0.00 37.71 2.69
229 230 6.942886 TTGTCTGTGTGTTTGACAATTTTC 57.057 33.333 0.00 0.00 43.15 2.29
234 235 5.163703 GGTATGTTGTCTGTGTGTTTGACAA 60.164 40.000 0.00 0.00 44.96 3.18
235 236 4.334203 GGTATGTTGTCTGTGTGTTTGACA 59.666 41.667 0.00 0.00 38.71 3.58
236 237 4.334203 TGGTATGTTGTCTGTGTGTTTGAC 59.666 41.667 0.00 0.00 0.00 3.18
237 238 4.334203 GTGGTATGTTGTCTGTGTGTTTGA 59.666 41.667 0.00 0.00 0.00 2.69
238 239 4.597079 GTGGTATGTTGTCTGTGTGTTTG 58.403 43.478 0.00 0.00 0.00 2.93
239 240 3.311322 CGTGGTATGTTGTCTGTGTGTTT 59.689 43.478 0.00 0.00 0.00 2.83
240 241 2.869801 CGTGGTATGTTGTCTGTGTGTT 59.130 45.455 0.00 0.00 0.00 3.32
241 242 2.101750 TCGTGGTATGTTGTCTGTGTGT 59.898 45.455 0.00 0.00 0.00 3.72
242 243 2.749776 TCGTGGTATGTTGTCTGTGTG 58.250 47.619 0.00 0.00 0.00 3.82
243 244 3.462483 TTCGTGGTATGTTGTCTGTGT 57.538 42.857 0.00 0.00 0.00 3.72
244 245 4.245660 AGATTCGTGGTATGTTGTCTGTG 58.754 43.478 0.00 0.00 0.00 3.66
245 246 4.021456 TGAGATTCGTGGTATGTTGTCTGT 60.021 41.667 0.00 0.00 0.00 3.41
246 247 4.494484 TGAGATTCGTGGTATGTTGTCTG 58.506 43.478 0.00 0.00 0.00 3.51
247 248 4.801330 TGAGATTCGTGGTATGTTGTCT 57.199 40.909 0.00 0.00 0.00 3.41
248 249 5.168569 TCTTGAGATTCGTGGTATGTTGTC 58.831 41.667 0.00 0.00 0.00 3.18
249 250 5.147330 TCTTGAGATTCGTGGTATGTTGT 57.853 39.130 0.00 0.00 0.00 3.32
250 251 5.812127 TGATCTTGAGATTCGTGGTATGTTG 59.188 40.000 0.00 0.00 34.37 3.33
251 252 5.977635 TGATCTTGAGATTCGTGGTATGTT 58.022 37.500 0.00 0.00 34.37 2.71
252 253 5.360999 TCTGATCTTGAGATTCGTGGTATGT 59.639 40.000 0.00 0.00 34.37 2.29
253 254 5.689514 GTCTGATCTTGAGATTCGTGGTATG 59.310 44.000 0.00 0.00 34.37 2.39
254 255 5.360999 TGTCTGATCTTGAGATTCGTGGTAT 59.639 40.000 0.00 0.00 34.37 2.73
255 256 4.705023 TGTCTGATCTTGAGATTCGTGGTA 59.295 41.667 0.00 0.00 34.37 3.25
256 257 3.511540 TGTCTGATCTTGAGATTCGTGGT 59.488 43.478 0.00 0.00 34.37 4.16
257 258 3.862267 GTGTCTGATCTTGAGATTCGTGG 59.138 47.826 0.00 0.00 34.37 4.94
258 259 4.488879 TGTGTCTGATCTTGAGATTCGTG 58.511 43.478 0.00 0.00 34.37 4.35
259 260 4.790765 TGTGTCTGATCTTGAGATTCGT 57.209 40.909 0.00 0.00 34.37 3.85
260 261 4.025896 GCATGTGTCTGATCTTGAGATTCG 60.026 45.833 0.00 0.00 34.37 3.34
261 262 4.025896 CGCATGTGTCTGATCTTGAGATTC 60.026 45.833 0.00 0.00 34.37 2.52
262 263 3.869832 CGCATGTGTCTGATCTTGAGATT 59.130 43.478 0.00 0.00 34.37 2.40
263 264 3.131755 TCGCATGTGTCTGATCTTGAGAT 59.868 43.478 6.09 0.00 37.51 2.75
264 265 2.493278 TCGCATGTGTCTGATCTTGAGA 59.507 45.455 6.09 0.00 0.00 3.27
265 266 2.884827 TCGCATGTGTCTGATCTTGAG 58.115 47.619 6.09 0.00 0.00 3.02
266 267 2.995939 GTTCGCATGTGTCTGATCTTGA 59.004 45.455 6.09 0.00 0.00 3.02
267 268 2.998670 AGTTCGCATGTGTCTGATCTTG 59.001 45.455 6.09 0.00 0.00 3.02
268 269 3.325293 AGTTCGCATGTGTCTGATCTT 57.675 42.857 6.09 0.00 0.00 2.40
269 270 4.428209 CTTAGTTCGCATGTGTCTGATCT 58.572 43.478 6.09 0.00 0.00 2.75
270 271 3.000724 GCTTAGTTCGCATGTGTCTGATC 59.999 47.826 6.09 0.00 0.00 2.92
271 272 2.932614 GCTTAGTTCGCATGTGTCTGAT 59.067 45.455 6.09 0.00 0.00 2.90
272 273 2.288763 TGCTTAGTTCGCATGTGTCTGA 60.289 45.455 6.09 2.91 31.40 3.27
273 274 2.068519 TGCTTAGTTCGCATGTGTCTG 58.931 47.619 6.09 0.00 31.40 3.51
274 275 2.455674 TGCTTAGTTCGCATGTGTCT 57.544 45.000 6.09 8.73 31.40 3.41
275 276 3.246226 CCTATGCTTAGTTCGCATGTGTC 59.754 47.826 6.09 1.38 46.69 3.67
276 277 3.198068 CCTATGCTTAGTTCGCATGTGT 58.802 45.455 6.09 0.00 46.69 3.72
277 278 3.198068 ACCTATGCTTAGTTCGCATGTG 58.802 45.455 7.68 0.00 46.69 3.21
278 279 3.118775 TGACCTATGCTTAGTTCGCATGT 60.119 43.478 7.68 0.00 46.69 3.21
279 280 3.457234 TGACCTATGCTTAGTTCGCATG 58.543 45.455 7.68 0.00 46.69 4.06
281 282 2.758423 TCTGACCTATGCTTAGTTCGCA 59.242 45.455 5.95 0.00 42.25 5.10
282 283 3.438297 TCTGACCTATGCTTAGTTCGC 57.562 47.619 5.95 0.00 0.00 4.70
283 284 4.202161 ACCATCTGACCTATGCTTAGTTCG 60.202 45.833 5.95 0.00 0.00 3.95
284 285 5.283457 ACCATCTGACCTATGCTTAGTTC 57.717 43.478 5.95 1.99 0.00 3.01
285 286 5.700402 AACCATCTGACCTATGCTTAGTT 57.300 39.130 5.95 0.00 0.00 2.24
286 287 5.305644 CCTAACCATCTGACCTATGCTTAGT 59.694 44.000 5.95 0.00 0.00 2.24
287 288 5.305644 ACCTAACCATCTGACCTATGCTTAG 59.694 44.000 0.00 0.00 0.00 2.18
288 289 5.216622 ACCTAACCATCTGACCTATGCTTA 58.783 41.667 0.00 0.00 0.00 3.09
289 290 4.040755 ACCTAACCATCTGACCTATGCTT 58.959 43.478 0.00 0.00 0.00 3.91
290 291 3.658725 ACCTAACCATCTGACCTATGCT 58.341 45.455 0.00 0.00 0.00 3.79
291 292 4.381411 GAACCTAACCATCTGACCTATGC 58.619 47.826 0.00 0.00 0.00 3.14
292 293 4.656112 AGGAACCTAACCATCTGACCTATG 59.344 45.833 0.00 0.00 0.00 2.23
293 294 4.897051 AGGAACCTAACCATCTGACCTAT 58.103 43.478 0.00 0.00 0.00 2.57
294 295 4.348020 AGGAACCTAACCATCTGACCTA 57.652 45.455 0.00 0.00 0.00 3.08
295 296 3.207044 AGGAACCTAACCATCTGACCT 57.793 47.619 0.00 0.00 0.00 3.85
296 297 3.009143 ACAAGGAACCTAACCATCTGACC 59.991 47.826 0.00 0.00 0.00 4.02
297 298 4.003648 CACAAGGAACCTAACCATCTGAC 58.996 47.826 0.00 0.00 0.00 3.51
298 299 3.009033 CCACAAGGAACCTAACCATCTGA 59.991 47.826 0.00 0.00 36.89 3.27
299 300 3.244911 ACCACAAGGAACCTAACCATCTG 60.245 47.826 0.00 0.00 38.69 2.90
300 301 2.986728 ACCACAAGGAACCTAACCATCT 59.013 45.455 0.00 0.00 38.69 2.90
301 302 3.081804 CACCACAAGGAACCTAACCATC 58.918 50.000 0.00 0.00 38.69 3.51
302 303 2.225017 CCACCACAAGGAACCTAACCAT 60.225 50.000 0.00 0.00 38.69 3.55
303 304 1.144093 CCACCACAAGGAACCTAACCA 59.856 52.381 0.00 0.00 38.69 3.67
304 305 1.422402 TCCACCACAAGGAACCTAACC 59.578 52.381 0.00 0.00 38.69 2.85
305 306 2.943036 TCCACCACAAGGAACCTAAC 57.057 50.000 0.00 0.00 38.69 2.34
311 312 0.923358 ACAGGTTCCACCACAAGGAA 59.077 50.000 0.00 0.00 41.95 3.36
312 313 0.923358 AACAGGTTCCACCACAAGGA 59.077 50.000 0.00 0.00 41.95 3.36
313 314 2.504367 CTAACAGGTTCCACCACAAGG 58.496 52.381 0.00 0.00 41.95 3.61
314 315 2.105821 TCCTAACAGGTTCCACCACAAG 59.894 50.000 0.00 0.00 41.95 3.16
315 316 2.128535 TCCTAACAGGTTCCACCACAA 58.871 47.619 0.00 0.00 41.95 3.33
316 317 1.809133 TCCTAACAGGTTCCACCACA 58.191 50.000 0.00 0.00 41.95 4.17
317 318 2.943036 TTCCTAACAGGTTCCACCAC 57.057 50.000 0.00 0.00 41.95 4.16
318 319 3.256704 AGATTCCTAACAGGTTCCACCA 58.743 45.455 0.00 0.00 41.95 4.17
319 320 5.431179 TTAGATTCCTAACAGGTTCCACC 57.569 43.478 0.00 0.00 36.53 4.61
320 321 7.793036 ACTATTAGATTCCTAACAGGTTCCAC 58.207 38.462 0.00 0.00 37.67 4.02
321 322 7.989947 ACTATTAGATTCCTAACAGGTTCCA 57.010 36.000 0.00 0.00 37.67 3.53
415 428 2.902705 TCTACTGCGTTTGGACAACT 57.097 45.000 0.00 0.00 0.00 3.16
606 638 1.040646 TTCTCTGGTTCGAGCAGTGT 58.959 50.000 0.53 0.00 43.70 3.55
890 924 4.838152 GAAGGCGCTGGCGATGGA 62.838 66.667 19.31 0.00 42.83 3.41
977 1011 3.319198 GGACGTCTTCCCTGGGCA 61.319 66.667 16.46 0.00 38.70 5.36
1191 1225 1.002251 GAGAAGTAGCGATCTGGGTCG 60.002 57.143 0.00 0.00 44.14 4.79
1890 2082 2.903547 CGTGGCCTGTTTTGGTCCG 61.904 63.158 3.32 0.00 0.00 4.79
2016 2485 9.918630 GTAAGGGCTACGATATAGATTTACAAA 57.081 33.333 0.00 0.00 0.00 2.83
2567 3044 1.657751 GAGCATTTTCGAGGGGTGCC 61.658 60.000 9.54 0.00 36.50 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.