Multiple sequence alignment - TraesCS7D01G056200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G056200 chr7D 100.000 3177 0 0 1 3177 29983402 29986578 0.000000e+00 5867.0
1 TraesCS7D01G056200 chr7D 95.359 474 21 1 2705 3177 75913710 75913237 0.000000e+00 752.0
2 TraesCS7D01G056200 chr7A 88.889 1404 95 20 902 2273 30271316 30272690 0.000000e+00 1672.0
3 TraesCS7D01G056200 chr7A 88.889 801 58 6 1375 2167 30240856 30241633 0.000000e+00 957.0
4 TraesCS7D01G056200 chr7A 95.853 434 15 2 2275 2706 30241837 30242269 0.000000e+00 699.0
5 TraesCS7D01G056200 chr7A 95.672 439 12 2 2275 2706 30272800 30273238 0.000000e+00 699.0
6 TraesCS7D01G056200 chr7A 87.711 415 31 10 913 1327 30240462 30240856 1.730000e-127 466.0
7 TraesCS7D01G056200 chr7A 87.671 73 6 2 2547 2619 439731559 439731628 7.300000e-12 82.4
8 TraesCS7D01G056200 chr7A 100.000 42 0 0 2232 2273 30241686 30241727 9.450000e-11 78.7
9 TraesCS7D01G056200 chr7A 97.297 37 1 0 2164 2200 30241655 30241691 2.650000e-06 63.9
10 TraesCS7D01G056200 chr2D 97.168 918 26 0 1 918 66554046 66553129 0.000000e+00 1552.0
11 TraesCS7D01G056200 chr2D 96.619 917 31 0 2 918 90248937 90248021 0.000000e+00 1522.0
12 TraesCS7D01G056200 chr2D 90.080 1119 110 1 1050 2167 636923254 636922136 0.000000e+00 1450.0
13 TraesCS7D01G056200 chr2D 83.702 1129 97 25 1146 2244 600580331 600579260 0.000000e+00 985.0
14 TraesCS7D01G056200 chr2D 95.772 473 19 1 2706 3177 460932548 460933020 0.000000e+00 761.0
15 TraesCS7D01G056200 chr2D 95.359 474 21 1 2705 3177 253766780 253767253 0.000000e+00 752.0
16 TraesCS7D01G056200 chr2D 76.938 1032 193 21 1050 2038 638350909 638349880 2.150000e-151 545.0
17 TraesCS7D01G056200 chr2D 72.879 778 162 35 1295 2035 638330154 638330919 4.120000e-54 222.0
18 TraesCS7D01G056200 chr2D 84.783 92 7 5 2547 2631 636939857 636939766 5.650000e-13 86.1
19 TraesCS7D01G056200 chr2D 97.778 45 1 0 2575 2619 638319793 638319837 9.450000e-11 78.7
20 TraesCS7D01G056200 chr6D 97.059 918 27 0 1 918 96700147 96701064 0.000000e+00 1546.0
21 TraesCS7D01G056200 chr5D 96.514 918 32 0 1 918 411999922 411999005 0.000000e+00 1519.0
22 TraesCS7D01G056200 chr5D 95.861 918 38 0 1 918 412043939 412043022 0.000000e+00 1485.0
23 TraesCS7D01G056200 chr5D 95.359 474 21 1 2705 3177 492697710 492698183 0.000000e+00 752.0
24 TraesCS7D01G056200 chr5D 95.349 473 21 1 2706 3177 310585002 310584530 0.000000e+00 750.0
25 TraesCS7D01G056200 chr5D 87.671 73 6 2 2547 2619 296933413 296933344 7.300000e-12 82.4
26 TraesCS7D01G056200 chr5D 95.349 43 2 0 2291 2333 565751524 565751482 5.690000e-08 69.4
27 TraesCS7D01G056200 chr3B 96.187 918 35 0 1 918 182752992 182753909 0.000000e+00 1502.0
28 TraesCS7D01G056200 chr2A 96.370 909 29 2 1 909 194707114 194708018 0.000000e+00 1493.0
29 TraesCS7D01G056200 chr2A 88.617 694 70 4 1474 2167 762725798 762726482 0.000000e+00 835.0
30 TraesCS7D01G056200 chr2A 84.578 415 60 4 1077 1488 762724703 762725116 2.950000e-110 409.0
31 TraesCS7D01G056200 chr2A 84.898 245 24 7 1773 2015 761777631 761777398 5.300000e-58 235.0
32 TraesCS7D01G056200 chr2A 74.201 438 102 9 1132 1561 763974976 763974542 4.210000e-39 172.0
33 TraesCS7D01G056200 chr2A 82.051 195 6 10 2079 2244 761777367 761777173 4.270000e-29 139.0
34 TraesCS7D01G056200 chr2A 90.244 82 5 3 1048 1127 763968656 763968576 1.560000e-18 104.0
35 TraesCS7D01G056200 chr2A 92.593 54 3 1 2567 2619 763979788 763979735 3.400000e-10 76.8
36 TraesCS7D01G056200 chr2A 100.000 32 0 0 2242 2273 761777154 761777123 3.420000e-05 60.2
37 TraesCS7D01G056200 chr3D 93.906 919 53 3 1 918 40990823 40991739 0.000000e+00 1384.0
38 TraesCS7D01G056200 chr3D 95.148 474 22 1 2705 3177 486430152 486429679 0.000000e+00 747.0
39 TraesCS7D01G056200 chr1D 93.900 918 54 2 1 918 86883946 86884861 0.000000e+00 1384.0
40 TraesCS7D01G056200 chr1D 94.792 480 23 2 2700 3177 334493163 334493642 0.000000e+00 747.0
41 TraesCS7D01G056200 chr4A 93.100 942 63 2 1228 2167 699189121 699188180 0.000000e+00 1378.0
42 TraesCS7D01G056200 chr4A 90.764 314 24 3 919 1232 699192792 699192484 6.340000e-112 414.0
43 TraesCS7D01G056200 chr4A 92.053 151 11 1 2557 2706 699188089 699187939 8.930000e-51 211.0
44 TraesCS7D01G056200 chr4A 95.890 73 3 0 2164 2236 699188156 699188084 5.570000e-23 119.0
45 TraesCS7D01G056200 chr2B 83.598 1134 95 29 1146 2244 796164785 796165862 0.000000e+00 979.0
46 TraesCS7D01G056200 chr2B 77.369 517 103 11 1070 1577 797240316 797240827 8.620000e-76 294.0
47 TraesCS7D01G056200 chr2B 72.467 839 182 36 1234 2035 797198774 797199600 1.150000e-54 224.0
48 TraesCS7D01G056200 chr2B 76.023 342 49 15 1051 1362 797208947 797209285 2.550000e-31 147.0
49 TraesCS7D01G056200 chr2B 100.000 32 0 0 2242 2273 796165881 796165912 3.420000e-05 60.2
50 TraesCS7D01G056200 chr4D 95.570 474 20 1 2705 3177 65193334 65192861 0.000000e+00 758.0
51 TraesCS7D01G056200 chr4D 95.148 474 22 1 2705 3177 320205161 320205634 0.000000e+00 747.0
52 TraesCS7D01G056200 chr4B 85.714 91 9 3 2535 2624 35913191 35913278 3.370000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G056200 chr7D 29983402 29986578 3176 False 5867.00 5867 100.00000 1 3177 1 chr7D.!!$F1 3176
1 TraesCS7D01G056200 chr7A 30271316 30273238 1922 False 1185.50 1672 92.28050 902 2706 2 chr7A.!!$F3 1804
2 TraesCS7D01G056200 chr7A 30240462 30242269 1807 False 452.92 957 93.95000 913 2706 5 chr7A.!!$F2 1793
3 TraesCS7D01G056200 chr2D 66553129 66554046 917 True 1552.00 1552 97.16800 1 918 1 chr2D.!!$R1 917
4 TraesCS7D01G056200 chr2D 90248021 90248937 916 True 1522.00 1522 96.61900 2 918 1 chr2D.!!$R2 916
5 TraesCS7D01G056200 chr2D 636922136 636923254 1118 True 1450.00 1450 90.08000 1050 2167 1 chr2D.!!$R4 1117
6 TraesCS7D01G056200 chr2D 600579260 600580331 1071 True 985.00 985 83.70200 1146 2244 1 chr2D.!!$R3 1098
7 TraesCS7D01G056200 chr2D 638349880 638350909 1029 True 545.00 545 76.93800 1050 2038 1 chr2D.!!$R6 988
8 TraesCS7D01G056200 chr2D 638330154 638330919 765 False 222.00 222 72.87900 1295 2035 1 chr2D.!!$F4 740
9 TraesCS7D01G056200 chr6D 96700147 96701064 917 False 1546.00 1546 97.05900 1 918 1 chr6D.!!$F1 917
10 TraesCS7D01G056200 chr5D 411999005 411999922 917 True 1519.00 1519 96.51400 1 918 1 chr5D.!!$R3 917
11 TraesCS7D01G056200 chr5D 412043022 412043939 917 True 1485.00 1485 95.86100 1 918 1 chr5D.!!$R4 917
12 TraesCS7D01G056200 chr3B 182752992 182753909 917 False 1502.00 1502 96.18700 1 918 1 chr3B.!!$F1 917
13 TraesCS7D01G056200 chr2A 194707114 194708018 904 False 1493.00 1493 96.37000 1 909 1 chr2A.!!$F1 908
14 TraesCS7D01G056200 chr2A 762724703 762726482 1779 False 622.00 835 86.59750 1077 2167 2 chr2A.!!$F2 1090
15 TraesCS7D01G056200 chr3D 40990823 40991739 916 False 1384.00 1384 93.90600 1 918 1 chr3D.!!$F1 917
16 TraesCS7D01G056200 chr1D 86883946 86884861 915 False 1384.00 1384 93.90000 1 918 1 chr1D.!!$F1 917
17 TraesCS7D01G056200 chr4A 699187939 699192792 4853 True 530.50 1378 92.95175 919 2706 4 chr4A.!!$R1 1787
18 TraesCS7D01G056200 chr2B 796164785 796165912 1127 False 519.60 979 91.79900 1146 2273 2 chr2B.!!$F4 1127
19 TraesCS7D01G056200 chr2B 797240316 797240827 511 False 294.00 294 77.36900 1070 1577 1 chr2B.!!$F3 507
20 TraesCS7D01G056200 chr2B 797198774 797199600 826 False 224.00 224 72.46700 1234 2035 1 chr2B.!!$F1 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 775 0.678048 GCTGTAGGGAAGCCAACCTG 60.678 60.0 1.24 0.0 37.72 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2759 7081 0.106868 TCCAGCAGCATGATCTTGGG 60.107 55.0 10.35 3.22 39.69 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 1.200519 CGGGGTCCATTACTCTGGAA 58.799 55.000 0.00 0.00 46.66 3.53
231 232 2.057137 ACATGAAATACCGGCAGCAT 57.943 45.000 0.00 0.00 0.00 3.79
246 247 4.191544 GGCAGCATAACTCATACTTGTGA 58.808 43.478 0.00 0.00 0.00 3.58
435 436 5.425630 ACTCGGGTATAGTGAAAATCAACC 58.574 41.667 0.00 0.00 0.00 3.77
570 572 5.109210 CGGCAGATTCCGCAGAAATATATA 58.891 41.667 0.00 0.00 43.18 0.86
672 674 1.302511 GCGGCTTCAAACCCAGAGA 60.303 57.895 0.00 0.00 0.00 3.10
773 775 0.678048 GCTGTAGGGAAGCCAACCTG 60.678 60.000 1.24 0.00 37.72 4.00
863 865 7.398904 CCCCCTGACTTTATTCTTCCAAAAATA 59.601 37.037 0.00 0.00 0.00 1.40
886 888 3.866883 AAACGATTCGGCCATCATTTT 57.133 38.095 11.29 0.00 0.00 1.82
946 952 5.163622 GCATGAAGGCTGCTAGTCAATTTTA 60.164 40.000 0.00 0.00 36.68 1.52
1089 1095 1.978617 CAACATCCAAGCCCGCCTT 60.979 57.895 0.00 0.00 0.00 4.35
1201 1207 3.040414 CTCTTCTCGCTCGCGGACA 62.040 63.158 6.13 0.00 40.25 4.02
1268 4655 2.060980 GCTCCTCATCCTCCCGTGT 61.061 63.158 0.00 0.00 0.00 4.49
1372 4759 4.530857 CCATCCCCTGCGTCGACC 62.531 72.222 10.58 3.43 0.00 4.79
1418 4812 6.881065 TCTCGTTTGAGGAGAAATCATTCATT 59.119 34.615 0.00 0.00 42.79 2.57
1771 5872 3.229156 TACCGGCGTGTTCACCAGG 62.229 63.158 6.01 3.90 0.00 4.45
1785 5886 2.224159 CCAGGGTGGTGGTAGCACT 61.224 63.158 23.29 1.39 45.25 4.40
2025 6173 2.042333 TGAGCTTAGGGCCGGCTA 60.042 61.111 28.56 9.19 43.05 3.93
2038 6186 1.661341 CCGGCTACGTCTACTACACT 58.339 55.000 0.00 0.00 38.78 3.55
2273 6477 4.284746 GGAAACATTGGGTGGGTTAATCAA 59.715 41.667 0.00 0.00 0.00 2.57
2311 6623 3.430098 CCAAACTGCAACCAAGCTAACAA 60.430 43.478 0.00 0.00 34.99 2.83
2330 6642 2.124011 ACAAGCTGCACATGTTTTCG 57.876 45.000 1.02 0.00 0.00 3.46
2407 6728 3.064324 GGATGTGGTGCAGGGTGC 61.064 66.667 0.00 0.00 45.29 5.01
2468 6789 3.807622 AGTGGTTGTATACGTATGCATGC 59.192 43.478 24.13 19.09 0.00 4.06
2484 6805 3.195002 GCGCTGCCGATGTTGCTA 61.195 61.111 0.00 0.00 36.29 3.49
2487 6808 1.756375 CGCTGCCGATGTTGCTACTC 61.756 60.000 0.00 0.00 36.29 2.59
2624 6945 6.761099 TTGTTTCAAACTGCAACCTAGTTA 57.239 33.333 1.10 0.00 37.39 2.24
2632 6953 7.223971 TCAAACTGCAACCTAGTTATTATAGCG 59.776 37.037 0.00 0.00 37.39 4.26
2675 6997 7.227116 AGCTTGTCATTTTTGCACATTTATGTT 59.773 29.630 0.00 0.00 39.39 2.71
2680 7002 8.494347 GTCATTTTTGCACATTTATGTTGCTAA 58.506 29.630 14.07 11.33 39.39 3.09
2707 7029 2.281830 CCTCCTCGGCTTCTTCTGT 58.718 57.895 0.00 0.00 0.00 3.41
2708 7030 0.610687 CCTCCTCGGCTTCTTCTGTT 59.389 55.000 0.00 0.00 0.00 3.16
2709 7031 1.674221 CCTCCTCGGCTTCTTCTGTTG 60.674 57.143 0.00 0.00 0.00 3.33
2710 7032 0.321671 TCCTCGGCTTCTTCTGTTGG 59.678 55.000 0.00 0.00 0.00 3.77
2711 7033 0.321671 CCTCGGCTTCTTCTGTTGGA 59.678 55.000 0.00 0.00 0.00 3.53
2712 7034 1.270839 CCTCGGCTTCTTCTGTTGGAA 60.271 52.381 0.00 0.00 0.00 3.53
2713 7035 1.801178 CTCGGCTTCTTCTGTTGGAAC 59.199 52.381 0.00 0.00 0.00 3.62
2714 7036 1.140052 TCGGCTTCTTCTGTTGGAACA 59.860 47.619 0.00 0.00 37.37 3.18
2715 7037 1.264288 CGGCTTCTTCTGTTGGAACAC 59.736 52.381 0.00 0.00 39.29 3.32
2716 7038 1.264288 GGCTTCTTCTGTTGGAACACG 59.736 52.381 0.00 0.00 39.29 4.49
2717 7039 1.334149 GCTTCTTCTGTTGGAACACGC 60.334 52.381 0.00 0.00 39.29 5.34
2718 7040 0.934496 TTCTTCTGTTGGAACACGCG 59.066 50.000 3.53 3.53 39.29 6.01
2719 7041 0.878523 TCTTCTGTTGGAACACGCGG 60.879 55.000 12.47 1.27 39.29 6.46
2720 7042 1.153329 TTCTGTTGGAACACGCGGT 60.153 52.632 12.47 2.05 39.29 5.68
2721 7043 0.104487 TTCTGTTGGAACACGCGGTA 59.896 50.000 12.47 0.00 39.29 4.02
2722 7044 0.598158 TCTGTTGGAACACGCGGTAC 60.598 55.000 12.47 1.36 39.29 3.34
2749 7071 8.389586 CTACGGTAGCACCAAATAAAATTTTC 57.610 34.615 6.72 0.00 38.47 2.29
2750 7072 6.988522 ACGGTAGCACCAAATAAAATTTTCT 58.011 32.000 6.72 0.00 38.47 2.52
2751 7073 8.113173 ACGGTAGCACCAAATAAAATTTTCTA 57.887 30.769 6.72 0.00 38.47 2.10
2752 7074 8.024865 ACGGTAGCACCAAATAAAATTTTCTAC 58.975 33.333 6.72 9.57 38.47 2.59
2753 7075 7.486870 CGGTAGCACCAAATAAAATTTTCTACC 59.513 37.037 20.68 20.68 38.47 3.18
2754 7076 7.486870 GGTAGCACCAAATAAAATTTTCTACCG 59.513 37.037 18.08 5.88 38.42 4.02
2755 7077 5.867174 AGCACCAAATAAAATTTTCTACCGC 59.133 36.000 6.72 3.51 0.00 5.68
2756 7078 5.220135 GCACCAAATAAAATTTTCTACCGCG 60.220 40.000 6.72 0.00 0.00 6.46
2757 7079 4.860352 ACCAAATAAAATTTTCTACCGCGC 59.140 37.500 6.72 0.00 0.00 6.86
2758 7080 4.859798 CCAAATAAAATTTTCTACCGCGCA 59.140 37.500 8.75 0.00 0.00 6.09
2759 7081 5.220135 CCAAATAAAATTTTCTACCGCGCAC 60.220 40.000 8.75 0.00 0.00 5.34
2760 7082 2.341318 AAAATTTTCTACCGCGCACC 57.659 45.000 8.75 0.00 0.00 5.01
2761 7083 0.524414 AAATTTTCTACCGCGCACCC 59.476 50.000 8.75 0.00 0.00 4.61
2762 7084 0.606944 AATTTTCTACCGCGCACCCA 60.607 50.000 8.75 0.00 0.00 4.51
2763 7085 0.606944 ATTTTCTACCGCGCACCCAA 60.607 50.000 8.75 0.00 0.00 4.12
2764 7086 1.231958 TTTTCTACCGCGCACCCAAG 61.232 55.000 8.75 0.00 0.00 3.61
2765 7087 2.102109 TTTCTACCGCGCACCCAAGA 62.102 55.000 8.75 0.00 0.00 3.02
2766 7088 1.895020 TTCTACCGCGCACCCAAGAT 61.895 55.000 8.75 0.00 0.00 2.40
2767 7089 1.883084 CTACCGCGCACCCAAGATC 60.883 63.158 8.75 0.00 0.00 2.75
2768 7090 2.572095 CTACCGCGCACCCAAGATCA 62.572 60.000 8.75 0.00 0.00 2.92
2769 7091 1.966901 TACCGCGCACCCAAGATCAT 61.967 55.000 8.75 0.00 0.00 2.45
2770 7092 2.711311 CGCGCACCCAAGATCATG 59.289 61.111 8.75 0.00 0.00 3.07
2771 7093 2.410469 GCGCACCCAAGATCATGC 59.590 61.111 0.30 0.00 34.66 4.06
2772 7094 2.117156 GCGCACCCAAGATCATGCT 61.117 57.895 0.30 0.00 35.88 3.79
2773 7095 1.725665 CGCACCCAAGATCATGCTG 59.274 57.895 0.00 0.00 35.88 4.41
2774 7096 1.436336 GCACCCAAGATCATGCTGC 59.564 57.895 0.00 0.00 35.16 5.25
2775 7097 1.035932 GCACCCAAGATCATGCTGCT 61.036 55.000 0.00 0.00 35.16 4.24
2776 7098 0.738975 CACCCAAGATCATGCTGCTG 59.261 55.000 0.00 0.00 0.00 4.41
2777 7099 0.395311 ACCCAAGATCATGCTGCTGG 60.395 55.000 0.00 0.00 0.00 4.85
2778 7100 0.106868 CCCAAGATCATGCTGCTGGA 60.107 55.000 0.00 0.00 0.00 3.86
2779 7101 1.683938 CCCAAGATCATGCTGCTGGAA 60.684 52.381 0.00 0.00 0.00 3.53
2780 7102 2.097036 CCAAGATCATGCTGCTGGAAA 58.903 47.619 0.00 0.00 0.00 3.13
2781 7103 2.693591 CCAAGATCATGCTGCTGGAAAT 59.306 45.455 0.00 0.00 0.00 2.17
2782 7104 3.887110 CCAAGATCATGCTGCTGGAAATA 59.113 43.478 0.00 0.00 0.00 1.40
2783 7105 4.023107 CCAAGATCATGCTGCTGGAAATAG 60.023 45.833 0.00 0.00 0.00 1.73
2784 7106 4.701651 AGATCATGCTGCTGGAAATAGA 57.298 40.909 0.00 0.00 0.00 1.98
2785 7107 5.244189 AGATCATGCTGCTGGAAATAGAT 57.756 39.130 0.00 0.00 0.00 1.98
2786 7108 5.247084 AGATCATGCTGCTGGAAATAGATC 58.753 41.667 0.00 10.01 0.00 2.75
2787 7109 4.426736 TCATGCTGCTGGAAATAGATCA 57.573 40.909 0.00 0.00 0.00 2.92
2788 7110 4.132336 TCATGCTGCTGGAAATAGATCAC 58.868 43.478 0.00 0.00 0.00 3.06
2789 7111 2.554142 TGCTGCTGGAAATAGATCACG 58.446 47.619 0.00 0.00 0.00 4.35
2790 7112 1.869767 GCTGCTGGAAATAGATCACGG 59.130 52.381 0.00 0.00 0.00 4.94
2791 7113 2.487934 CTGCTGGAAATAGATCACGGG 58.512 52.381 0.00 0.00 0.00 5.28
2792 7114 2.103094 CTGCTGGAAATAGATCACGGGA 59.897 50.000 0.00 0.00 0.00 5.14
2793 7115 2.705658 TGCTGGAAATAGATCACGGGAT 59.294 45.455 0.00 0.00 36.13 3.85
2802 7124 1.861971 GATCACGGGATCGGGTTTAC 58.138 55.000 12.77 0.00 40.50 2.01
2803 7125 0.466963 ATCACGGGATCGGGTTTACC 59.533 55.000 0.00 0.00 41.28 2.85
2804 7126 0.903924 TCACGGGATCGGGTTTACCA 60.904 55.000 0.69 0.00 41.28 3.25
2805 7127 0.741927 CACGGGATCGGGTTTACCAC 60.742 60.000 0.69 0.00 40.22 4.16
2806 7128 0.906282 ACGGGATCGGGTTTACCACT 60.906 55.000 0.69 0.00 40.22 4.00
2807 7129 1.113788 CGGGATCGGGTTTACCACTA 58.886 55.000 0.69 0.00 40.22 2.74
2808 7130 1.068127 CGGGATCGGGTTTACCACTAG 59.932 57.143 0.69 0.00 40.22 2.57
2809 7131 2.391678 GGGATCGGGTTTACCACTAGA 58.608 52.381 0.00 0.00 40.22 2.43
2810 7132 2.102084 GGGATCGGGTTTACCACTAGAC 59.898 54.545 0.00 0.00 40.22 2.59
2811 7133 2.223665 GGATCGGGTTTACCACTAGACG 60.224 54.545 0.00 0.00 40.22 4.18
2812 7134 0.527565 TCGGGTTTACCACTAGACGC 59.472 55.000 0.00 0.00 40.22 5.19
2813 7135 0.799534 CGGGTTTACCACTAGACGCG 60.800 60.000 3.53 3.53 40.22 6.01
2814 7136 1.080435 GGGTTTACCACTAGACGCGC 61.080 60.000 5.73 0.00 39.85 6.86
2815 7137 0.388907 GGTTTACCACTAGACGCGCA 60.389 55.000 5.73 0.00 35.64 6.09
2816 7138 0.989890 GTTTACCACTAGACGCGCAG 59.010 55.000 5.73 3.30 0.00 5.18
2817 7139 0.599558 TTTACCACTAGACGCGCAGT 59.400 50.000 5.73 6.37 0.00 4.40
2830 7152 3.345808 GCAGTCACCGCAGCGAAA 61.346 61.111 18.75 0.00 0.00 3.46
2831 7153 2.856032 CAGTCACCGCAGCGAAAG 59.144 61.111 18.75 5.51 0.00 2.62
2832 7154 1.956170 CAGTCACCGCAGCGAAAGT 60.956 57.895 18.75 2.20 0.00 2.66
2833 7155 0.666274 CAGTCACCGCAGCGAAAGTA 60.666 55.000 18.75 0.00 0.00 2.24
2834 7156 0.388649 AGTCACCGCAGCGAAAGTAG 60.389 55.000 18.75 0.00 0.00 2.57
2835 7157 0.388134 GTCACCGCAGCGAAAGTAGA 60.388 55.000 18.75 3.82 0.00 2.59
2836 7158 0.109272 TCACCGCAGCGAAAGTAGAG 60.109 55.000 18.75 0.00 0.00 2.43
2837 7159 0.388649 CACCGCAGCGAAAGTAGAGT 60.389 55.000 18.75 0.00 0.00 3.24
2838 7160 0.317479 ACCGCAGCGAAAGTAGAGTT 59.683 50.000 18.75 0.00 0.00 3.01
2839 7161 0.716108 CCGCAGCGAAAGTAGAGTTG 59.284 55.000 18.75 0.00 0.00 3.16
2840 7162 0.716108 CGCAGCGAAAGTAGAGTTGG 59.284 55.000 9.98 0.00 0.00 3.77
2841 7163 1.797025 GCAGCGAAAGTAGAGTTGGT 58.203 50.000 0.00 0.00 0.00 3.67
2842 7164 1.461127 GCAGCGAAAGTAGAGTTGGTG 59.539 52.381 0.00 0.00 0.00 4.17
2843 7165 2.866460 GCAGCGAAAGTAGAGTTGGTGA 60.866 50.000 0.00 0.00 0.00 4.02
2844 7166 3.589988 CAGCGAAAGTAGAGTTGGTGAT 58.410 45.455 0.00 0.00 0.00 3.06
2845 7167 3.369147 CAGCGAAAGTAGAGTTGGTGATG 59.631 47.826 0.00 0.00 0.00 3.07
2846 7168 3.006967 AGCGAAAGTAGAGTTGGTGATGT 59.993 43.478 0.00 0.00 0.00 3.06
2847 7169 3.123621 GCGAAAGTAGAGTTGGTGATGTG 59.876 47.826 0.00 0.00 0.00 3.21
2848 7170 4.307432 CGAAAGTAGAGTTGGTGATGTGT 58.693 43.478 0.00 0.00 0.00 3.72
2849 7171 4.150627 CGAAAGTAGAGTTGGTGATGTGTG 59.849 45.833 0.00 0.00 0.00 3.82
2850 7172 4.689612 AAGTAGAGTTGGTGATGTGTGT 57.310 40.909 0.00 0.00 0.00 3.72
2851 7173 5.801531 AAGTAGAGTTGGTGATGTGTGTA 57.198 39.130 0.00 0.00 0.00 2.90
2852 7174 5.392767 AGTAGAGTTGGTGATGTGTGTAG 57.607 43.478 0.00 0.00 0.00 2.74
2853 7175 3.045601 AGAGTTGGTGATGTGTGTAGC 57.954 47.619 0.00 0.00 0.00 3.58
2854 7176 2.076863 GAGTTGGTGATGTGTGTAGCC 58.923 52.381 0.00 0.00 0.00 3.93
2855 7177 0.796312 GTTGGTGATGTGTGTAGCCG 59.204 55.000 0.00 0.00 0.00 5.52
2856 7178 0.682292 TTGGTGATGTGTGTAGCCGA 59.318 50.000 0.00 0.00 0.00 5.54
2857 7179 0.901827 TGGTGATGTGTGTAGCCGAT 59.098 50.000 0.00 0.00 0.00 4.18
2858 7180 1.134818 TGGTGATGTGTGTAGCCGATC 60.135 52.381 0.00 0.00 0.00 3.69
2859 7181 1.137086 GGTGATGTGTGTAGCCGATCT 59.863 52.381 0.00 0.00 0.00 2.75
2860 7182 2.464865 GTGATGTGTGTAGCCGATCTC 58.535 52.381 0.00 0.00 0.00 2.75
2861 7183 1.409064 TGATGTGTGTAGCCGATCTCC 59.591 52.381 0.00 0.00 0.00 3.71
2862 7184 0.753262 ATGTGTGTAGCCGATCTCCC 59.247 55.000 0.00 0.00 0.00 4.30
2863 7185 1.065928 GTGTGTAGCCGATCTCCCG 59.934 63.158 0.00 0.00 0.00 5.14
2872 7194 3.607661 GATCTCCCGGGCCGTCTC 61.608 72.222 26.32 9.73 0.00 3.36
2883 7205 3.441290 CCGTCTCCTCCTCGCGTT 61.441 66.667 5.77 0.00 0.00 4.84
2884 7206 2.202492 CGTCTCCTCCTCGCGTTG 60.202 66.667 5.77 0.00 0.00 4.10
2885 7207 2.507324 GTCTCCTCCTCGCGTTGC 60.507 66.667 5.77 0.00 0.00 4.17
2886 7208 3.760035 TCTCCTCCTCGCGTTGCC 61.760 66.667 5.77 0.00 0.00 4.52
2889 7211 4.514577 CCTCCTCGCGTTGCCGAT 62.515 66.667 5.77 0.00 36.54 4.18
2890 7212 2.956964 CTCCTCGCGTTGCCGATC 60.957 66.667 5.77 0.00 36.54 3.69
2891 7213 3.417275 CTCCTCGCGTTGCCGATCT 62.417 63.158 5.77 0.00 36.54 2.75
2892 7214 2.956964 CCTCGCGTTGCCGATCTC 60.957 66.667 5.77 0.00 36.54 2.75
2893 7215 2.956964 CTCGCGTTGCCGATCTCC 60.957 66.667 5.77 0.00 36.54 3.71
2894 7216 4.508128 TCGCGTTGCCGATCTCCC 62.508 66.667 5.77 0.00 35.63 4.30
2897 7219 4.812476 CGTTGCCGATCTCCCGCA 62.812 66.667 0.00 0.00 35.63 5.69
2898 7220 2.435938 GTTGCCGATCTCCCGCAA 60.436 61.111 3.22 3.22 0.00 4.85
2899 7221 2.038269 GTTGCCGATCTCCCGCAAA 61.038 57.895 7.63 0.00 31.45 3.68
2900 7222 2.038269 TTGCCGATCTCCCGCAAAC 61.038 57.895 4.51 0.00 0.00 2.93
2901 7223 2.435938 GCCGATCTCCCGCAAACA 60.436 61.111 0.00 0.00 0.00 2.83
2902 7224 2.464459 GCCGATCTCCCGCAAACAG 61.464 63.158 0.00 0.00 0.00 3.16
2903 7225 2.464459 CCGATCTCCCGCAAACAGC 61.464 63.158 0.00 0.00 40.87 4.40
2912 7234 2.480555 GCAAACAGCGATGACCCG 59.519 61.111 8.12 0.00 0.00 5.28
2913 7235 2.325082 GCAAACAGCGATGACCCGT 61.325 57.895 8.12 0.00 0.00 5.28
2914 7236 1.497278 CAAACAGCGATGACCCGTG 59.503 57.895 8.12 0.00 0.00 4.94
2915 7237 0.948623 CAAACAGCGATGACCCGTGA 60.949 55.000 8.12 0.00 0.00 4.35
2916 7238 0.250124 AAACAGCGATGACCCGTGAA 60.250 50.000 8.12 0.00 0.00 3.18
2917 7239 0.949105 AACAGCGATGACCCGTGAAC 60.949 55.000 8.12 0.00 0.00 3.18
2918 7240 2.126071 AGCGATGACCCGTGAACG 60.126 61.111 0.00 0.00 39.44 3.95
2928 7250 2.582498 CGTGAACGGCGATCTCCC 60.582 66.667 16.62 2.90 35.37 4.30
2954 7276 4.796231 CACCTCGCGGTTCCCTCG 62.796 72.222 6.13 0.00 42.13 4.63
2956 7278 3.755628 CCTCGCGGTTCCCTCGAA 61.756 66.667 6.13 0.00 0.00 3.71
2957 7279 2.506438 CTCGCGGTTCCCTCGAAC 60.506 66.667 6.13 0.00 46.52 3.95
2971 7293 4.036977 GAACGGTTCGTCCAAGCA 57.963 55.556 4.94 0.00 39.99 3.91
2972 7294 1.568025 GAACGGTTCGTCCAAGCAC 59.432 57.895 4.94 0.00 39.99 4.40
2973 7295 1.838568 GAACGGTTCGTCCAAGCACC 61.839 60.000 4.94 0.00 39.99 5.01
2974 7296 3.411351 CGGTTCGTCCAAGCACCG 61.411 66.667 0.00 0.00 45.75 4.94
2975 7297 3.723348 GGTTCGTCCAAGCACCGC 61.723 66.667 0.00 0.00 35.97 5.68
2976 7298 2.970324 GTTCGTCCAAGCACCGCA 60.970 61.111 0.00 0.00 0.00 5.69
2977 7299 2.664851 TTCGTCCAAGCACCGCAG 60.665 61.111 0.00 0.00 0.00 5.18
2978 7300 3.158537 TTCGTCCAAGCACCGCAGA 62.159 57.895 0.00 0.00 0.00 4.26
2979 7301 2.434884 CGTCCAAGCACCGCAGAT 60.435 61.111 0.00 0.00 0.00 2.90
2980 7302 2.743752 CGTCCAAGCACCGCAGATG 61.744 63.158 0.00 0.00 0.00 2.90
2981 7303 2.747460 TCCAAGCACCGCAGATGC 60.747 61.111 0.00 0.00 37.78 3.91
2991 7313 2.203112 GCAGATGCGATGCCTCCA 60.203 61.111 0.00 0.00 37.73 3.86
2992 7314 1.820906 GCAGATGCGATGCCTCCAA 60.821 57.895 0.00 0.00 37.73 3.53
2993 7315 1.783031 GCAGATGCGATGCCTCCAAG 61.783 60.000 0.00 0.00 37.73 3.61
2994 7316 1.147824 AGATGCGATGCCTCCAAGG 59.852 57.895 0.00 0.00 38.80 3.61
2995 7317 1.153086 GATGCGATGCCTCCAAGGT 60.153 57.895 0.00 0.00 37.80 3.50
2996 7318 0.106708 GATGCGATGCCTCCAAGGTA 59.893 55.000 0.00 0.00 37.80 3.08
2997 7319 0.767375 ATGCGATGCCTCCAAGGTAT 59.233 50.000 0.00 0.00 43.70 2.73
3002 7324 1.595311 ATGCCTCCAAGGTATCCACA 58.405 50.000 0.00 0.00 35.72 4.17
3003 7325 0.618458 TGCCTCCAAGGTATCCACAC 59.382 55.000 0.00 0.00 37.80 3.82
3004 7326 0.462047 GCCTCCAAGGTATCCACACG 60.462 60.000 0.00 0.00 37.80 4.49
3005 7327 0.902531 CCTCCAAGGTATCCACACGT 59.097 55.000 0.00 0.00 0.00 4.49
3006 7328 2.104967 CCTCCAAGGTATCCACACGTA 58.895 52.381 0.00 0.00 0.00 3.57
3007 7329 2.159142 CCTCCAAGGTATCCACACGTAC 60.159 54.545 0.00 0.00 0.00 3.67
3008 7330 1.473677 TCCAAGGTATCCACACGTACG 59.526 52.381 15.01 15.01 0.00 3.67
3009 7331 1.470285 CCAAGGTATCCACACGTACGG 60.470 57.143 21.06 11.05 0.00 4.02
3010 7332 0.819582 AAGGTATCCACACGTACGGG 59.180 55.000 17.69 17.69 0.00 5.28
3011 7333 1.039233 AGGTATCCACACGTACGGGG 61.039 60.000 23.48 18.30 0.00 5.73
3012 7334 1.037030 GGTATCCACACGTACGGGGA 61.037 60.000 23.48 22.73 0.00 4.81
3013 7335 0.383231 GTATCCACACGTACGGGGAG 59.617 60.000 23.48 13.74 31.96 4.30
3014 7336 1.386525 TATCCACACGTACGGGGAGC 61.387 60.000 23.48 0.00 31.96 4.70
3015 7337 3.687102 CCACACGTACGGGGAGCA 61.687 66.667 23.48 0.00 0.00 4.26
3016 7338 2.126071 CACACGTACGGGGAGCAG 60.126 66.667 23.48 2.10 0.00 4.24
3017 7339 4.065281 ACACGTACGGGGAGCAGC 62.065 66.667 23.48 0.00 0.00 5.25
3020 7342 4.849329 CGTACGGGGAGCAGCGTC 62.849 72.222 7.57 0.00 0.00 5.19
3021 7343 4.849329 GTACGGGGAGCAGCGTCG 62.849 72.222 0.00 0.00 0.00 5.12
3035 7357 4.194720 GTCGAGCGGCGGACTGAT 62.195 66.667 9.78 0.00 41.33 2.90
3036 7358 2.515290 TCGAGCGGCGGACTGATA 60.515 61.111 9.78 0.00 41.33 2.15
3037 7359 2.050895 CGAGCGGCGGACTGATAG 60.051 66.667 9.78 0.00 36.03 2.08
3038 7360 2.336809 GAGCGGCGGACTGATAGG 59.663 66.667 9.78 0.00 0.00 2.57
3039 7361 2.442272 AGCGGCGGACTGATAGGT 60.442 61.111 9.78 0.00 0.00 3.08
3040 7362 2.027751 GCGGCGGACTGATAGGTC 59.972 66.667 9.78 0.00 35.66 3.85
3048 7370 2.107705 ACTGATAGGTCCAGTCGCG 58.892 57.895 0.00 0.00 40.55 5.87
3049 7371 1.299468 CTGATAGGTCCAGTCGCGC 60.299 63.158 0.00 0.00 0.00 6.86
3050 7372 2.353607 GATAGGTCCAGTCGCGCG 60.354 66.667 26.76 26.76 0.00 6.86
3051 7373 3.825833 GATAGGTCCAGTCGCGCGG 62.826 68.421 31.69 14.23 0.00 6.46
3067 7389 4.066139 GGCAAGGGCATGGGGAGT 62.066 66.667 0.00 0.00 43.71 3.85
3068 7390 2.757099 GCAAGGGCATGGGGAGTG 60.757 66.667 0.00 0.00 40.72 3.51
3069 7391 2.043652 CAAGGGCATGGGGAGTGG 60.044 66.667 0.00 0.00 0.00 4.00
3070 7392 4.066139 AAGGGCATGGGGAGTGGC 62.066 66.667 0.00 0.00 41.02 5.01
3075 7397 4.802051 CATGGGGAGTGGCGGTGG 62.802 72.222 0.00 0.00 0.00 4.61
3079 7401 3.712907 GGGAGTGGCGGTGGCTAA 61.713 66.667 0.00 0.00 39.81 3.09
3080 7402 2.436115 GGAGTGGCGGTGGCTAAC 60.436 66.667 0.00 0.00 39.81 2.34
3081 7403 2.813908 GAGTGGCGGTGGCTAACG 60.814 66.667 1.83 1.83 39.81 3.18
3082 7404 4.388499 AGTGGCGGTGGCTAACGG 62.388 66.667 10.32 1.44 39.81 4.44
3085 7407 4.171103 GGCGGTGGCTAACGGGAT 62.171 66.667 10.32 0.00 39.81 3.85
3086 7408 2.124860 GCGGTGGCTAACGGGATT 60.125 61.111 10.32 0.00 35.83 3.01
3087 7409 2.178235 GCGGTGGCTAACGGGATTC 61.178 63.158 10.32 0.00 35.83 2.52
3088 7410 1.520666 CGGTGGCTAACGGGATTCT 59.479 57.895 0.00 0.00 0.00 2.40
3089 7411 0.529992 CGGTGGCTAACGGGATTCTC 60.530 60.000 0.00 0.00 0.00 2.87
3090 7412 0.831307 GGTGGCTAACGGGATTCTCT 59.169 55.000 0.00 0.00 0.00 3.10
3091 7413 1.209747 GGTGGCTAACGGGATTCTCTT 59.790 52.381 0.00 0.00 0.00 2.85
3092 7414 2.552031 GTGGCTAACGGGATTCTCTTC 58.448 52.381 0.00 0.00 0.00 2.87
3093 7415 1.136305 TGGCTAACGGGATTCTCTTCG 59.864 52.381 0.00 0.00 0.00 3.79
3094 7416 1.407979 GGCTAACGGGATTCTCTTCGA 59.592 52.381 0.00 0.00 0.00 3.71
3095 7417 2.036089 GGCTAACGGGATTCTCTTCGAT 59.964 50.000 0.00 0.00 0.00 3.59
3096 7418 3.310246 GCTAACGGGATTCTCTTCGATC 58.690 50.000 0.00 0.00 0.00 3.69
3097 7419 3.243434 GCTAACGGGATTCTCTTCGATCA 60.243 47.826 0.00 0.00 0.00 2.92
3098 7420 3.887621 AACGGGATTCTCTTCGATCAA 57.112 42.857 0.00 0.00 0.00 2.57
3099 7421 4.408182 AACGGGATTCTCTTCGATCAAT 57.592 40.909 0.00 0.00 0.00 2.57
3100 7422 3.983741 ACGGGATTCTCTTCGATCAATC 58.016 45.455 0.00 0.00 0.00 2.67
3101 7423 3.243907 ACGGGATTCTCTTCGATCAATCC 60.244 47.826 10.41 10.41 42.52 3.01
3102 7424 3.006323 CGGGATTCTCTTCGATCAATCCT 59.994 47.826 15.89 0.00 42.74 3.24
3103 7425 4.218635 CGGGATTCTCTTCGATCAATCCTA 59.781 45.833 15.89 0.00 42.74 2.94
3104 7426 5.279006 CGGGATTCTCTTCGATCAATCCTAA 60.279 44.000 15.89 0.00 42.74 2.69
3105 7427 6.162777 GGGATTCTCTTCGATCAATCCTAAG 58.837 44.000 15.89 0.00 42.74 2.18
3106 7428 6.239458 GGGATTCTCTTCGATCAATCCTAAGT 60.239 42.308 15.89 0.00 42.74 2.24
3107 7429 6.644592 GGATTCTCTTCGATCAATCCTAAGTG 59.355 42.308 11.26 0.00 40.79 3.16
3108 7430 5.521906 TCTCTTCGATCAATCCTAAGTGG 57.478 43.478 0.00 0.00 37.10 4.00
3109 7431 4.956700 TCTCTTCGATCAATCCTAAGTGGT 59.043 41.667 0.00 0.00 37.07 4.16
3110 7432 5.011090 TCTTCGATCAATCCTAAGTGGTG 57.989 43.478 0.00 0.00 37.07 4.17
3111 7433 4.466370 TCTTCGATCAATCCTAAGTGGTGT 59.534 41.667 0.00 0.00 37.07 4.16
3112 7434 4.123497 TCGATCAATCCTAAGTGGTGTG 57.877 45.455 0.00 0.00 37.07 3.82
3113 7435 2.609459 CGATCAATCCTAAGTGGTGTGC 59.391 50.000 0.00 0.00 37.07 4.57
3114 7436 2.489938 TCAATCCTAAGTGGTGTGCC 57.510 50.000 0.00 0.00 37.07 5.01
3115 7437 1.004277 TCAATCCTAAGTGGTGTGCCC 59.996 52.381 0.00 0.00 37.07 5.36
3116 7438 1.072266 AATCCTAAGTGGTGTGCCCA 58.928 50.000 0.00 0.00 42.51 5.36
3123 7445 4.918360 TGGTGTGCCCACTCCCCT 62.918 66.667 14.79 0.00 42.61 4.79
3124 7446 3.580319 GGTGTGCCCACTCCCCTT 61.580 66.667 8.02 0.00 41.53 3.95
3125 7447 2.520968 GTGTGCCCACTCCCCTTT 59.479 61.111 0.00 0.00 38.61 3.11
3126 7448 1.765074 GTGTGCCCACTCCCCTTTA 59.235 57.895 0.00 0.00 38.61 1.85
3127 7449 0.331616 GTGTGCCCACTCCCCTTTAT 59.668 55.000 0.00 0.00 38.61 1.40
3128 7450 1.562475 GTGTGCCCACTCCCCTTTATA 59.438 52.381 0.00 0.00 38.61 0.98
3129 7451 2.174854 GTGTGCCCACTCCCCTTTATAT 59.825 50.000 0.00 0.00 38.61 0.86
3130 7452 3.393278 GTGTGCCCACTCCCCTTTATATA 59.607 47.826 0.00 0.00 38.61 0.86
3131 7453 3.650942 TGTGCCCACTCCCCTTTATATAG 59.349 47.826 0.00 0.00 0.00 1.31
3132 7454 3.908103 GTGCCCACTCCCCTTTATATAGA 59.092 47.826 0.00 0.00 0.00 1.98
3133 7455 3.908103 TGCCCACTCCCCTTTATATAGAC 59.092 47.826 0.00 0.00 0.00 2.59
3134 7456 3.263681 GCCCACTCCCCTTTATATAGACC 59.736 52.174 0.00 0.00 0.00 3.85
3135 7457 4.764491 CCCACTCCCCTTTATATAGACCT 58.236 47.826 0.00 0.00 0.00 3.85
3136 7458 4.778427 CCCACTCCCCTTTATATAGACCTC 59.222 50.000 0.00 0.00 0.00 3.85
3137 7459 4.778427 CCACTCCCCTTTATATAGACCTCC 59.222 50.000 0.00 0.00 0.00 4.30
3138 7460 4.463186 CACTCCCCTTTATATAGACCTCCG 59.537 50.000 0.00 0.00 0.00 4.63
3139 7461 4.356190 ACTCCCCTTTATATAGACCTCCGA 59.644 45.833 0.00 0.00 0.00 4.55
3140 7462 4.931914 TCCCCTTTATATAGACCTCCGAG 58.068 47.826 0.00 0.00 0.00 4.63
3141 7463 4.024670 CCCCTTTATATAGACCTCCGAGG 58.975 52.174 13.31 13.31 42.49 4.63
3150 7472 3.003173 CCTCCGAGGTGGGCTCAA 61.003 66.667 6.24 0.00 38.76 3.02
3151 7473 2.266055 CTCCGAGGTGGGCTCAAC 59.734 66.667 0.00 0.00 38.76 3.18
3152 7474 2.525629 TCCGAGGTGGGCTCAACA 60.526 61.111 3.40 0.00 38.76 3.33
3153 7475 2.358737 CCGAGGTGGGCTCAACAC 60.359 66.667 3.40 0.00 38.10 3.32
3154 7476 2.743718 CGAGGTGGGCTCAACACT 59.256 61.111 3.40 0.00 38.83 3.55
3155 7477 1.071471 CGAGGTGGGCTCAACACTT 59.929 57.895 3.40 0.00 38.83 3.16
3156 7478 1.230635 CGAGGTGGGCTCAACACTTG 61.231 60.000 3.40 0.00 38.83 3.16
3157 7479 0.108585 GAGGTGGGCTCAACACTTGA 59.891 55.000 3.40 0.00 38.83 3.02
3166 7488 2.839486 TCAACACTTGAGCCCACTAG 57.161 50.000 0.00 0.00 34.08 2.57
3167 7489 1.347707 TCAACACTTGAGCCCACTAGG 59.652 52.381 0.00 0.00 34.08 3.02
3168 7490 1.347707 CAACACTTGAGCCCACTAGGA 59.652 52.381 0.00 0.00 38.24 2.94
3169 7491 1.270907 ACACTTGAGCCCACTAGGAG 58.729 55.000 0.00 0.00 38.24 3.69
3170 7492 0.107945 CACTTGAGCCCACTAGGAGC 60.108 60.000 0.00 0.00 38.24 4.70
3171 7493 1.268283 ACTTGAGCCCACTAGGAGCC 61.268 60.000 0.00 0.00 38.24 4.70
3172 7494 1.977293 CTTGAGCCCACTAGGAGCCC 61.977 65.000 0.00 0.00 38.24 5.19
3173 7495 2.365635 GAGCCCACTAGGAGCCCA 60.366 66.667 0.00 0.00 38.24 5.36
3174 7496 2.689034 AGCCCACTAGGAGCCCAC 60.689 66.667 0.00 0.00 38.24 4.61
3175 7497 3.009115 GCCCACTAGGAGCCCACA 61.009 66.667 0.00 0.00 38.24 4.17
3176 7498 2.378634 GCCCACTAGGAGCCCACAT 61.379 63.158 0.00 0.00 38.24 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 7.405292 TCACAAAATCAGATTGTAGGAGGATT 58.595 34.615 0.00 0.00 38.90 3.01
231 232 6.530120 ACCACATTGTCACAAGTATGAGTTA 58.470 36.000 0.00 0.00 0.00 2.24
308 309 1.542492 TCGATAGGGCCGTTCTATCC 58.458 55.000 17.15 5.12 39.70 2.59
570 572 6.294731 GCAAGAATAAGTCCAAACCTGATTGT 60.295 38.462 0.00 0.00 0.00 2.71
672 674 0.819259 GCATCACCGCCCATGTATGT 60.819 55.000 0.00 0.00 0.00 2.29
863 865 2.684001 TGATGGCCGAATCGTTTACT 57.316 45.000 0.82 0.00 0.00 2.24
874 876 4.582701 TTTATGCCTAAAATGATGGCCG 57.417 40.909 0.00 0.00 45.56 6.13
886 888 9.639563 TTGGATCATCAATAACTTTTATGCCTA 57.360 29.630 0.00 0.00 0.00 3.93
923 925 4.978083 AAATTGACTAGCAGCCTTCATG 57.022 40.909 0.00 0.00 0.00 3.07
925 927 5.804639 TCTAAAATTGACTAGCAGCCTTCA 58.195 37.500 0.00 0.00 0.00 3.02
946 952 1.470979 CGATCGGGAATCAACGGTTCT 60.471 52.381 7.38 0.00 33.65 3.01
1030 1036 2.271497 GGAGATGCCTGCTGCTGT 59.729 61.111 0.00 0.00 42.00 4.40
1032 1038 4.172512 CGGGAGATGCCTGCTGCT 62.173 66.667 0.00 0.00 42.00 4.24
1167 1173 4.664677 AGCGTGGCACTCACCGAC 62.665 66.667 16.72 0.00 43.23 4.79
1172 1178 1.290324 GAGAAGAGCGTGGCACTCA 59.710 57.895 16.72 0.00 36.58 3.41
1175 1181 3.482783 GCGAGAAGAGCGTGGCAC 61.483 66.667 7.79 7.79 0.00 5.01
1176 1182 3.633094 GAGCGAGAAGAGCGTGGCA 62.633 63.158 0.00 0.00 40.04 4.92
1771 5872 1.905512 CCCTAGTGCTACCACCACC 59.094 63.158 0.00 0.00 43.09 4.61
1800 5901 0.317160 CAGGTACTTGCAGTGGTCGA 59.683 55.000 0.00 0.00 34.60 4.20
2025 6173 0.801251 GTCGGCAGTGTAGTAGACGT 59.199 55.000 0.00 0.00 0.00 4.34
2311 6623 1.675483 TCGAAAACATGTGCAGCTTGT 59.325 42.857 0.00 0.00 37.10 3.16
2330 6642 5.652994 AATCTATCCATCGTAGAAGGCTC 57.347 43.478 0.00 0.00 46.28 4.70
2407 6728 8.179509 AGCTAAATATAGTACACTACACCCTG 57.820 38.462 0.00 0.00 0.00 4.45
2468 6789 1.756375 GAGTAGCAACATCGGCAGCG 61.756 60.000 0.00 0.00 0.00 5.18
2484 6805 0.108585 AATGTCACCCAAGCACGAGT 59.891 50.000 0.00 0.00 0.00 4.18
2487 6808 3.848272 ATAAAATGTCACCCAAGCACG 57.152 42.857 0.00 0.00 0.00 5.34
2624 6945 3.838244 TCTTTCCAGTGCCGCTATAAT 57.162 42.857 0.00 0.00 0.00 1.28
2632 6953 2.165998 AGCTTGATTCTTTCCAGTGCC 58.834 47.619 0.00 0.00 0.00 5.01
2706 7028 2.848310 CGTACCGCGTGTTCCAAC 59.152 61.111 4.92 0.00 35.54 3.77
2707 7029 3.037249 GCGTACCGCGTGTTCCAA 61.037 61.111 4.92 0.00 44.55 3.53
2724 7046 8.241367 AGAAAATTTTATTTGGTGCTACCGTAG 58.759 33.333 2.75 0.76 42.58 3.51
2725 7047 8.113173 AGAAAATTTTATTTGGTGCTACCGTA 57.887 30.769 2.75 0.00 42.58 4.02
2726 7048 6.988522 AGAAAATTTTATTTGGTGCTACCGT 58.011 32.000 2.75 0.00 42.58 4.83
2727 7049 7.486870 GGTAGAAAATTTTATTTGGTGCTACCG 59.513 37.037 18.08 0.00 42.58 4.02
2728 7050 7.486870 CGGTAGAAAATTTTATTTGGTGCTACC 59.513 37.037 20.68 20.68 40.25 3.18
2729 7051 7.008901 GCGGTAGAAAATTTTATTTGGTGCTAC 59.991 37.037 2.75 8.20 0.00 3.58
2730 7052 7.030768 GCGGTAGAAAATTTTATTTGGTGCTA 58.969 34.615 2.75 0.00 0.00 3.49
2731 7053 5.867174 GCGGTAGAAAATTTTATTTGGTGCT 59.133 36.000 2.75 0.00 0.00 4.40
2732 7054 5.220135 CGCGGTAGAAAATTTTATTTGGTGC 60.220 40.000 2.75 2.28 0.00 5.01
2733 7055 5.220135 GCGCGGTAGAAAATTTTATTTGGTG 60.220 40.000 8.83 2.25 0.00 4.17
2734 7056 4.860352 GCGCGGTAGAAAATTTTATTTGGT 59.140 37.500 8.83 0.00 0.00 3.67
2735 7057 4.859798 TGCGCGGTAGAAAATTTTATTTGG 59.140 37.500 8.83 0.00 0.00 3.28
2736 7058 5.220135 GGTGCGCGGTAGAAAATTTTATTTG 60.220 40.000 8.83 0.00 0.00 2.32
2737 7059 4.860352 GGTGCGCGGTAGAAAATTTTATTT 59.140 37.500 8.83 0.00 0.00 1.40
2738 7060 4.417506 GGTGCGCGGTAGAAAATTTTATT 58.582 39.130 8.83 0.00 0.00 1.40
2739 7061 3.181494 GGGTGCGCGGTAGAAAATTTTAT 60.181 43.478 8.83 3.00 0.00 1.40
2740 7062 2.162008 GGGTGCGCGGTAGAAAATTTTA 59.838 45.455 8.83 0.00 0.00 1.52
2741 7063 1.068125 GGGTGCGCGGTAGAAAATTTT 60.068 47.619 8.83 2.28 0.00 1.82
2742 7064 0.524414 GGGTGCGCGGTAGAAAATTT 59.476 50.000 8.83 0.00 0.00 1.82
2743 7065 0.606944 TGGGTGCGCGGTAGAAAATT 60.607 50.000 8.83 0.00 0.00 1.82
2744 7066 0.606944 TTGGGTGCGCGGTAGAAAAT 60.607 50.000 8.83 0.00 0.00 1.82
2745 7067 1.227883 TTGGGTGCGCGGTAGAAAA 60.228 52.632 8.83 0.00 0.00 2.29
2746 7068 1.669760 CTTGGGTGCGCGGTAGAAA 60.670 57.895 8.83 0.00 0.00 2.52
2747 7069 1.895020 ATCTTGGGTGCGCGGTAGAA 61.895 55.000 8.83 0.00 0.00 2.10
2748 7070 2.292794 GATCTTGGGTGCGCGGTAGA 62.293 60.000 8.83 1.20 0.00 2.59
2749 7071 1.883084 GATCTTGGGTGCGCGGTAG 60.883 63.158 8.83 0.00 0.00 3.18
2750 7072 1.966901 ATGATCTTGGGTGCGCGGTA 61.967 55.000 8.83 0.00 0.00 4.02
2751 7073 3.329542 ATGATCTTGGGTGCGCGGT 62.330 57.895 8.83 0.00 0.00 5.68
2752 7074 2.514592 ATGATCTTGGGTGCGCGG 60.515 61.111 8.83 0.00 0.00 6.46
2753 7075 2.711311 CATGATCTTGGGTGCGCG 59.289 61.111 0.00 0.00 0.00 6.86
2754 7076 2.117156 AGCATGATCTTGGGTGCGC 61.117 57.895 0.00 0.00 42.18 6.09
2755 7077 1.725665 CAGCATGATCTTGGGTGCG 59.274 57.895 10.35 0.00 42.18 5.34
2756 7078 1.436336 GCAGCATGATCTTGGGTGC 59.564 57.895 16.10 16.10 46.79 5.01
2757 7079 0.738975 CAGCAGCATGATCTTGGGTG 59.261 55.000 10.35 8.32 39.69 4.61
2758 7080 0.395311 CCAGCAGCATGATCTTGGGT 60.395 55.000 10.35 0.00 39.69 4.51
2759 7081 0.106868 TCCAGCAGCATGATCTTGGG 60.107 55.000 10.35 3.22 39.69 4.12
2760 7082 1.758936 TTCCAGCAGCATGATCTTGG 58.241 50.000 10.35 0.00 39.69 3.61
2761 7083 4.820173 TCTATTTCCAGCAGCATGATCTTG 59.180 41.667 0.00 4.25 39.69 3.02
2762 7084 5.045012 TCTATTTCCAGCAGCATGATCTT 57.955 39.130 0.00 0.00 39.69 2.40
2763 7085 4.701651 TCTATTTCCAGCAGCATGATCT 57.298 40.909 0.00 0.00 39.69 2.75
2764 7086 5.001874 TGATCTATTTCCAGCAGCATGATC 58.998 41.667 0.00 0.00 39.69 2.92
2765 7087 4.760715 GTGATCTATTTCCAGCAGCATGAT 59.239 41.667 0.00 0.00 39.69 2.45
2766 7088 4.132336 GTGATCTATTTCCAGCAGCATGA 58.868 43.478 0.00 0.00 39.69 3.07
2767 7089 3.059120 CGTGATCTATTTCCAGCAGCATG 60.059 47.826 0.00 0.00 40.87 4.06
2768 7090 3.136763 CGTGATCTATTTCCAGCAGCAT 58.863 45.455 0.00 0.00 0.00 3.79
2769 7091 2.554142 CGTGATCTATTTCCAGCAGCA 58.446 47.619 0.00 0.00 0.00 4.41
2770 7092 1.869767 CCGTGATCTATTTCCAGCAGC 59.130 52.381 0.00 0.00 0.00 5.25
2771 7093 2.103094 TCCCGTGATCTATTTCCAGCAG 59.897 50.000 0.00 0.00 0.00 4.24
2772 7094 2.115427 TCCCGTGATCTATTTCCAGCA 58.885 47.619 0.00 0.00 0.00 4.41
2773 7095 2.910688 TCCCGTGATCTATTTCCAGC 57.089 50.000 0.00 0.00 0.00 4.85
2774 7096 3.579709 CGATCCCGTGATCTATTTCCAG 58.420 50.000 6.32 0.00 44.40 3.86
2775 7097 2.299013 CCGATCCCGTGATCTATTTCCA 59.701 50.000 6.32 0.00 44.40 3.53
2776 7098 2.353803 CCCGATCCCGTGATCTATTTCC 60.354 54.545 6.32 0.00 44.40 3.13
2777 7099 2.299297 ACCCGATCCCGTGATCTATTTC 59.701 50.000 6.32 0.00 44.40 2.17
2778 7100 2.326428 ACCCGATCCCGTGATCTATTT 58.674 47.619 6.32 0.00 44.40 1.40
2779 7101 2.011122 ACCCGATCCCGTGATCTATT 57.989 50.000 6.32 0.00 44.40 1.73
2780 7102 2.011122 AACCCGATCCCGTGATCTAT 57.989 50.000 6.32 0.00 44.40 1.98
2781 7103 1.784358 AAACCCGATCCCGTGATCTA 58.216 50.000 6.32 0.00 44.40 1.98
2782 7104 1.411612 GTAAACCCGATCCCGTGATCT 59.588 52.381 6.32 0.00 44.40 2.75
2783 7105 1.539712 GGTAAACCCGATCCCGTGATC 60.540 57.143 0.00 0.00 43.36 2.92
2784 7106 0.466963 GGTAAACCCGATCCCGTGAT 59.533 55.000 0.00 0.00 0.00 3.06
2785 7107 0.903924 TGGTAAACCCGATCCCGTGA 60.904 55.000 0.00 0.00 35.15 4.35
2786 7108 0.741927 GTGGTAAACCCGATCCCGTG 60.742 60.000 0.00 0.00 35.15 4.94
2787 7109 0.906282 AGTGGTAAACCCGATCCCGT 60.906 55.000 0.00 0.00 35.15 5.28
2788 7110 1.068127 CTAGTGGTAAACCCGATCCCG 59.932 57.143 0.00 0.00 35.15 5.14
2789 7111 2.102084 GTCTAGTGGTAAACCCGATCCC 59.898 54.545 0.00 0.00 35.15 3.85
2790 7112 2.223665 CGTCTAGTGGTAAACCCGATCC 60.224 54.545 0.00 0.00 35.15 3.36
2791 7113 2.797439 GCGTCTAGTGGTAAACCCGATC 60.797 54.545 0.00 0.00 35.15 3.69
2792 7114 1.135721 GCGTCTAGTGGTAAACCCGAT 59.864 52.381 0.00 0.00 35.15 4.18
2793 7115 0.527565 GCGTCTAGTGGTAAACCCGA 59.472 55.000 0.00 0.00 35.15 5.14
2794 7116 0.799534 CGCGTCTAGTGGTAAACCCG 60.800 60.000 0.00 0.00 35.15 5.28
2795 7117 1.080435 GCGCGTCTAGTGGTAAACCC 61.080 60.000 8.43 0.00 34.29 4.11
2796 7118 0.388907 TGCGCGTCTAGTGGTAAACC 60.389 55.000 8.43 0.00 0.00 3.27
2797 7119 0.989890 CTGCGCGTCTAGTGGTAAAC 59.010 55.000 8.43 0.00 0.00 2.01
2798 7120 0.599558 ACTGCGCGTCTAGTGGTAAA 59.400 50.000 8.43 0.00 0.00 2.01
2799 7121 0.169672 GACTGCGCGTCTAGTGGTAA 59.830 55.000 20.14 0.00 39.61 2.85
2800 7122 0.956902 TGACTGCGCGTCTAGTGGTA 60.957 55.000 25.00 7.69 43.25 3.25
2801 7123 2.265904 TGACTGCGCGTCTAGTGGT 61.266 57.895 25.00 6.42 43.25 4.16
2802 7124 1.801913 GTGACTGCGCGTCTAGTGG 60.802 63.158 25.00 3.74 43.25 4.00
2803 7125 1.801913 GGTGACTGCGCGTCTAGTG 60.802 63.158 25.00 4.92 43.25 2.74
2804 7126 2.567049 GGTGACTGCGCGTCTAGT 59.433 61.111 25.00 14.46 43.25 2.57
2805 7127 2.577112 CGGTGACTGCGCGTCTAG 60.577 66.667 25.00 11.55 43.25 2.43
2806 7128 4.771356 GCGGTGACTGCGCGTCTA 62.771 66.667 25.00 13.71 43.25 2.59
2813 7135 3.300667 CTTTCGCTGCGGTGACTGC 62.301 63.158 23.03 9.96 0.00 4.40
2814 7136 0.666274 TACTTTCGCTGCGGTGACTG 60.666 55.000 23.03 7.11 0.00 3.51
2815 7137 0.388649 CTACTTTCGCTGCGGTGACT 60.389 55.000 23.03 3.94 0.00 3.41
2816 7138 0.388134 TCTACTTTCGCTGCGGTGAC 60.388 55.000 23.03 0.00 0.00 3.67
2817 7139 0.109272 CTCTACTTTCGCTGCGGTGA 60.109 55.000 23.03 4.21 0.00 4.02
2818 7140 0.388649 ACTCTACTTTCGCTGCGGTG 60.389 55.000 23.03 14.27 0.00 4.94
2819 7141 0.317479 AACTCTACTTTCGCTGCGGT 59.683 50.000 23.03 14.50 0.00 5.68
2820 7142 0.716108 CAACTCTACTTTCGCTGCGG 59.284 55.000 23.03 8.78 0.00 5.69
2821 7143 0.716108 CCAACTCTACTTTCGCTGCG 59.284 55.000 17.25 17.25 0.00 5.18
2822 7144 1.461127 CACCAACTCTACTTTCGCTGC 59.539 52.381 0.00 0.00 0.00 5.25
2823 7145 3.026630 TCACCAACTCTACTTTCGCTG 57.973 47.619 0.00 0.00 0.00 5.18
2824 7146 3.006967 ACATCACCAACTCTACTTTCGCT 59.993 43.478 0.00 0.00 0.00 4.93
2825 7147 3.123621 CACATCACCAACTCTACTTTCGC 59.876 47.826 0.00 0.00 0.00 4.70
2826 7148 4.150627 CACACATCACCAACTCTACTTTCG 59.849 45.833 0.00 0.00 0.00 3.46
2827 7149 5.057149 ACACACATCACCAACTCTACTTTC 58.943 41.667 0.00 0.00 0.00 2.62
2828 7150 5.036117 ACACACATCACCAACTCTACTTT 57.964 39.130 0.00 0.00 0.00 2.66
2829 7151 4.689612 ACACACATCACCAACTCTACTT 57.310 40.909 0.00 0.00 0.00 2.24
2830 7152 4.322049 GCTACACACATCACCAACTCTACT 60.322 45.833 0.00 0.00 0.00 2.57
2831 7153 3.927142 GCTACACACATCACCAACTCTAC 59.073 47.826 0.00 0.00 0.00 2.59
2832 7154 3.056107 GGCTACACACATCACCAACTCTA 60.056 47.826 0.00 0.00 0.00 2.43
2833 7155 2.289694 GGCTACACACATCACCAACTCT 60.290 50.000 0.00 0.00 0.00 3.24
2834 7156 2.076863 GGCTACACACATCACCAACTC 58.923 52.381 0.00 0.00 0.00 3.01
2835 7157 1.608025 CGGCTACACACATCACCAACT 60.608 52.381 0.00 0.00 0.00 3.16
2836 7158 0.796312 CGGCTACACACATCACCAAC 59.204 55.000 0.00 0.00 0.00 3.77
2837 7159 0.682292 TCGGCTACACACATCACCAA 59.318 50.000 0.00 0.00 0.00 3.67
2838 7160 0.901827 ATCGGCTACACACATCACCA 59.098 50.000 0.00 0.00 0.00 4.17
2839 7161 1.137086 AGATCGGCTACACACATCACC 59.863 52.381 0.00 0.00 0.00 4.02
2840 7162 2.464865 GAGATCGGCTACACACATCAC 58.535 52.381 0.00 0.00 0.00 3.06
2841 7163 1.409064 GGAGATCGGCTACACACATCA 59.591 52.381 0.00 0.00 0.00 3.07
2842 7164 1.269831 GGGAGATCGGCTACACACATC 60.270 57.143 0.00 0.00 0.00 3.06
2843 7165 0.753262 GGGAGATCGGCTACACACAT 59.247 55.000 0.00 0.00 0.00 3.21
2844 7166 1.663379 CGGGAGATCGGCTACACACA 61.663 60.000 0.00 0.00 0.00 3.72
2845 7167 1.065928 CGGGAGATCGGCTACACAC 59.934 63.158 0.00 0.00 0.00 3.82
2846 7168 2.125326 CCGGGAGATCGGCTACACA 61.125 63.158 0.00 0.00 43.71 3.72
2847 7169 2.728817 CCGGGAGATCGGCTACAC 59.271 66.667 0.00 0.00 43.71 2.90
2855 7177 3.607661 GAGACGGCCCGGGAGATC 61.608 72.222 29.31 17.60 0.00 2.75
2866 7188 3.441290 AACGCGAGGAGGAGACGG 61.441 66.667 15.93 0.00 0.00 4.79
2867 7189 2.202492 CAACGCGAGGAGGAGACG 60.202 66.667 15.93 0.00 0.00 4.18
2868 7190 2.507324 GCAACGCGAGGAGGAGAC 60.507 66.667 15.93 0.00 0.00 3.36
2869 7191 3.760035 GGCAACGCGAGGAGGAGA 61.760 66.667 15.93 0.00 0.00 3.71
2884 7206 2.435938 TGTTTGCGGGAGATCGGC 60.436 61.111 0.00 0.00 41.41 5.54
2885 7207 2.464459 GCTGTTTGCGGGAGATCGG 61.464 63.158 0.00 0.00 0.00 4.18
2886 7208 3.093278 GCTGTTTGCGGGAGATCG 58.907 61.111 0.00 0.00 0.00 3.69
2895 7217 2.325082 ACGGGTCATCGCTGTTTGC 61.325 57.895 0.00 0.00 38.57 3.68
2896 7218 0.948623 TCACGGGTCATCGCTGTTTG 60.949 55.000 0.00 0.00 0.00 2.93
2897 7219 0.250124 TTCACGGGTCATCGCTGTTT 60.250 50.000 0.00 0.00 0.00 2.83
2898 7220 0.949105 GTTCACGGGTCATCGCTGTT 60.949 55.000 0.00 0.00 0.00 3.16
2899 7221 1.374252 GTTCACGGGTCATCGCTGT 60.374 57.895 0.00 0.00 0.00 4.40
2900 7222 2.444624 CGTTCACGGGTCATCGCTG 61.445 63.158 0.00 0.00 35.37 5.18
2901 7223 2.126071 CGTTCACGGGTCATCGCT 60.126 61.111 0.00 0.00 35.37 4.93
2911 7233 2.582498 GGGAGATCGCCGTTCACG 60.582 66.667 9.58 0.00 39.44 4.35
2912 7234 2.582498 CGGGAGATCGCCGTTCAC 60.582 66.667 9.58 0.00 0.00 3.18
2954 7276 1.568025 GTGCTTGGACGAACCGTTC 59.432 57.895 0.76 0.76 41.37 3.95
2955 7277 1.890510 GGTGCTTGGACGAACCGTT 60.891 57.895 0.00 0.00 41.37 4.44
2956 7278 2.280592 GGTGCTTGGACGAACCGT 60.281 61.111 0.00 0.00 45.10 4.83
2958 7280 3.723348 GCGGTGCTTGGACGAACC 61.723 66.667 0.00 0.00 39.54 3.62
2959 7281 2.954753 CTGCGGTGCTTGGACGAAC 61.955 63.158 0.00 0.00 0.00 3.95
2960 7282 2.449031 ATCTGCGGTGCTTGGACGAA 62.449 55.000 0.00 0.00 0.00 3.85
2961 7283 2.942796 ATCTGCGGTGCTTGGACGA 61.943 57.895 0.00 0.00 0.00 4.20
2962 7284 2.434884 ATCTGCGGTGCTTGGACG 60.435 61.111 0.00 0.00 0.00 4.79
2963 7285 3.044059 GCATCTGCGGTGCTTGGAC 62.044 63.158 11.41 0.00 39.45 4.02
2964 7286 2.747460 GCATCTGCGGTGCTTGGA 60.747 61.111 11.41 0.00 39.45 3.53
2974 7296 1.783031 CTTGGAGGCATCGCATCTGC 61.783 60.000 0.34 0.00 39.44 4.26
2975 7297 1.164662 CCTTGGAGGCATCGCATCTG 61.165 60.000 0.34 0.00 39.44 2.90
2976 7298 1.147824 CCTTGGAGGCATCGCATCT 59.852 57.895 0.34 0.00 39.44 2.90
2977 7299 0.106708 TACCTTGGAGGCATCGCATC 59.893 55.000 0.00 0.00 39.63 3.91
2978 7300 0.767375 ATACCTTGGAGGCATCGCAT 59.233 50.000 0.00 0.00 39.63 4.73
2979 7301 0.106708 GATACCTTGGAGGCATCGCA 59.893 55.000 0.00 0.00 39.63 5.10
2980 7302 0.603975 GGATACCTTGGAGGCATCGC 60.604 60.000 0.00 0.00 38.74 4.58
2981 7303 0.758734 TGGATACCTTGGAGGCATCG 59.241 55.000 0.00 0.00 38.74 3.84
2982 7304 1.490490 TGTGGATACCTTGGAGGCATC 59.510 52.381 0.00 0.00 39.63 3.91
2983 7305 1.212935 GTGTGGATACCTTGGAGGCAT 59.787 52.381 0.00 0.00 39.63 4.40
2984 7306 0.618458 GTGTGGATACCTTGGAGGCA 59.382 55.000 0.00 0.00 39.63 4.75
2985 7307 0.462047 CGTGTGGATACCTTGGAGGC 60.462 60.000 0.00 0.00 39.63 4.70
2986 7308 0.902531 ACGTGTGGATACCTTGGAGG 59.097 55.000 0.00 0.00 42.49 4.30
2987 7309 2.479049 CGTACGTGTGGATACCTTGGAG 60.479 54.545 7.22 0.00 0.00 3.86
2988 7310 1.473677 CGTACGTGTGGATACCTTGGA 59.526 52.381 7.22 0.00 0.00 3.53
2989 7311 1.470285 CCGTACGTGTGGATACCTTGG 60.470 57.143 15.21 0.00 0.00 3.61
2990 7312 1.470285 CCCGTACGTGTGGATACCTTG 60.470 57.143 15.21 0.00 0.00 3.61
2991 7313 0.819582 CCCGTACGTGTGGATACCTT 59.180 55.000 15.21 0.00 0.00 3.50
2992 7314 1.039233 CCCCGTACGTGTGGATACCT 61.039 60.000 15.21 0.00 0.00 3.08
2993 7315 1.037030 TCCCCGTACGTGTGGATACC 61.037 60.000 15.21 0.00 0.00 2.73
2994 7316 0.383231 CTCCCCGTACGTGTGGATAC 59.617 60.000 15.21 0.00 0.00 2.24
2995 7317 1.386525 GCTCCCCGTACGTGTGGATA 61.387 60.000 15.21 0.00 0.00 2.59
2996 7318 2.718073 GCTCCCCGTACGTGTGGAT 61.718 63.158 15.21 0.00 0.00 3.41
2997 7319 3.376078 GCTCCCCGTACGTGTGGA 61.376 66.667 15.21 15.12 0.00 4.02
2998 7320 3.642778 CTGCTCCCCGTACGTGTGG 62.643 68.421 15.21 11.60 0.00 4.17
2999 7321 2.126071 CTGCTCCCCGTACGTGTG 60.126 66.667 15.21 7.08 0.00 3.82
3000 7322 4.065281 GCTGCTCCCCGTACGTGT 62.065 66.667 15.21 0.00 0.00 4.49
3003 7325 4.849329 GACGCTGCTCCCCGTACG 62.849 72.222 8.69 8.69 37.87 3.67
3004 7326 4.849329 CGACGCTGCTCCCCGTAC 62.849 72.222 0.00 0.00 37.87 3.67
3018 7340 2.718993 CTATCAGTCCGCCGCTCGAC 62.719 65.000 0.37 0.37 41.67 4.20
3019 7341 2.515290 TATCAGTCCGCCGCTCGA 60.515 61.111 0.00 0.00 41.67 4.04
3020 7342 2.050895 CTATCAGTCCGCCGCTCG 60.051 66.667 0.00 0.00 38.08 5.03
3021 7343 2.336809 CCTATCAGTCCGCCGCTC 59.663 66.667 0.00 0.00 0.00 5.03
3022 7344 2.442272 ACCTATCAGTCCGCCGCT 60.442 61.111 0.00 0.00 0.00 5.52
3023 7345 2.027751 GACCTATCAGTCCGCCGC 59.972 66.667 0.00 0.00 0.00 6.53
3024 7346 2.728817 GGACCTATCAGTCCGCCG 59.271 66.667 0.00 0.00 46.57 6.46
3030 7352 2.005960 GCGCGACTGGACCTATCAGT 62.006 60.000 12.10 0.00 46.82 3.41
3031 7353 1.299468 GCGCGACTGGACCTATCAG 60.299 63.158 12.10 0.00 38.16 2.90
3032 7354 2.805546 GCGCGACTGGACCTATCA 59.194 61.111 12.10 0.00 0.00 2.15
3033 7355 2.353607 CGCGCGACTGGACCTATC 60.354 66.667 28.94 0.00 0.00 2.08
3034 7356 3.900892 CCGCGCGACTGGACCTAT 61.901 66.667 34.63 0.00 0.00 2.57
3050 7372 4.066139 ACTCCCCATGCCCTTGCC 62.066 66.667 0.00 0.00 36.33 4.52
3051 7373 2.757099 CACTCCCCATGCCCTTGC 60.757 66.667 0.00 0.00 38.26 4.01
3052 7374 2.043652 CCACTCCCCATGCCCTTG 60.044 66.667 0.00 0.00 0.00 3.61
3053 7375 4.066139 GCCACTCCCCATGCCCTT 62.066 66.667 0.00 0.00 0.00 3.95
3058 7380 4.802051 CCACCGCCACTCCCCATG 62.802 72.222 0.00 0.00 0.00 3.66
3062 7384 3.712907 TTAGCCACCGCCACTCCC 61.713 66.667 0.00 0.00 34.57 4.30
3063 7385 2.436115 GTTAGCCACCGCCACTCC 60.436 66.667 0.00 0.00 34.57 3.85
3064 7386 2.813908 CGTTAGCCACCGCCACTC 60.814 66.667 0.00 0.00 34.57 3.51
3065 7387 4.388499 CCGTTAGCCACCGCCACT 62.388 66.667 0.00 0.00 34.57 4.00
3068 7390 3.692370 AATCCCGTTAGCCACCGCC 62.692 63.158 0.00 0.00 34.57 6.13
3069 7391 2.124860 AATCCCGTTAGCCACCGC 60.125 61.111 0.00 0.00 0.00 5.68
3070 7392 0.529992 GAGAATCCCGTTAGCCACCG 60.530 60.000 0.00 0.00 0.00 4.94
3071 7393 0.831307 AGAGAATCCCGTTAGCCACC 59.169 55.000 0.00 0.00 33.66 4.61
3072 7394 2.552031 GAAGAGAATCCCGTTAGCCAC 58.448 52.381 0.00 0.00 33.66 5.01
3073 7395 1.136305 CGAAGAGAATCCCGTTAGCCA 59.864 52.381 0.00 0.00 33.66 4.75
3074 7396 1.407979 TCGAAGAGAATCCCGTTAGCC 59.592 52.381 0.00 0.00 33.66 3.93
3075 7397 2.865343 TCGAAGAGAATCCCGTTAGC 57.135 50.000 0.00 0.00 33.66 3.09
3076 7398 4.569761 TGATCGAAGAGAATCCCGTTAG 57.430 45.455 0.00 0.00 43.63 2.34
3077 7399 4.994907 TTGATCGAAGAGAATCCCGTTA 57.005 40.909 0.00 0.00 43.63 3.18
3078 7400 3.887621 TTGATCGAAGAGAATCCCGTT 57.112 42.857 0.00 0.00 43.63 4.44
3079 7401 3.243907 GGATTGATCGAAGAGAATCCCGT 60.244 47.826 13.32 0.00 46.02 5.28
3080 7402 3.321497 GGATTGATCGAAGAGAATCCCG 58.679 50.000 13.32 0.00 46.02 5.14
3083 7405 6.644592 CCACTTAGGATTGATCGAAGAGAATC 59.355 42.308 0.00 0.00 39.60 2.52
3084 7406 6.098982 ACCACTTAGGATTGATCGAAGAGAAT 59.901 38.462 0.00 0.00 39.60 2.40
3085 7407 5.422331 ACCACTTAGGATTGATCGAAGAGAA 59.578 40.000 0.00 0.00 39.60 2.87
3086 7408 4.956700 ACCACTTAGGATTGATCGAAGAGA 59.043 41.667 0.00 0.00 39.60 3.10
3087 7409 5.046529 CACCACTTAGGATTGATCGAAGAG 58.953 45.833 0.00 4.18 39.60 2.85
3088 7410 4.466370 ACACCACTTAGGATTGATCGAAGA 59.534 41.667 0.00 0.00 41.22 2.87
3089 7411 4.568359 CACACCACTTAGGATTGATCGAAG 59.432 45.833 0.00 3.89 41.22 3.79
3090 7412 4.503910 CACACCACTTAGGATTGATCGAA 58.496 43.478 0.00 0.00 41.22 3.71
3091 7413 3.678806 GCACACCACTTAGGATTGATCGA 60.679 47.826 0.00 0.00 41.22 3.59
3092 7414 2.609459 GCACACCACTTAGGATTGATCG 59.391 50.000 0.00 0.00 41.22 3.69
3093 7415 2.945668 GGCACACCACTTAGGATTGATC 59.054 50.000 0.00 0.00 41.22 2.92
3094 7416 2.357154 GGGCACACCACTTAGGATTGAT 60.357 50.000 0.00 0.00 41.22 2.57
3095 7417 1.004277 GGGCACACCACTTAGGATTGA 59.996 52.381 0.00 0.00 41.22 2.57
3096 7418 1.271871 TGGGCACACCACTTAGGATTG 60.272 52.381 0.00 0.00 46.80 2.67
3097 7419 1.072266 TGGGCACACCACTTAGGATT 58.928 50.000 0.00 0.00 46.80 3.01
3098 7420 2.785743 TGGGCACACCACTTAGGAT 58.214 52.632 0.00 0.00 46.80 3.24
3099 7421 4.322681 TGGGCACACCACTTAGGA 57.677 55.556 0.00 0.00 46.80 2.94
3109 7431 1.974028 TATAAAGGGGAGTGGGCACA 58.026 50.000 0.00 0.00 0.00 4.57
3110 7432 3.908103 TCTATATAAAGGGGAGTGGGCAC 59.092 47.826 0.00 0.00 0.00 5.01
3111 7433 3.908103 GTCTATATAAAGGGGAGTGGGCA 59.092 47.826 0.00 0.00 0.00 5.36
3112 7434 3.263681 GGTCTATATAAAGGGGAGTGGGC 59.736 52.174 0.00 0.00 0.00 5.36
3113 7435 4.764491 AGGTCTATATAAAGGGGAGTGGG 58.236 47.826 0.00 0.00 0.00 4.61
3114 7436 4.778427 GGAGGTCTATATAAAGGGGAGTGG 59.222 50.000 0.00 0.00 0.00 4.00
3115 7437 4.463186 CGGAGGTCTATATAAAGGGGAGTG 59.537 50.000 0.00 0.00 0.00 3.51
3116 7438 4.356190 TCGGAGGTCTATATAAAGGGGAGT 59.644 45.833 0.00 0.00 0.00 3.85
3117 7439 4.931914 TCGGAGGTCTATATAAAGGGGAG 58.068 47.826 0.00 0.00 0.00 4.30
3118 7440 4.264262 CCTCGGAGGTCTATATAAAGGGGA 60.264 50.000 16.15 0.00 0.00 4.81
3119 7441 4.024670 CCTCGGAGGTCTATATAAAGGGG 58.975 52.174 16.15 0.00 0.00 4.79
3133 7455 3.003173 TTGAGCCCACCTCGGAGG 61.003 66.667 22.40 22.40 43.82 4.30
3134 7456 2.266055 GTTGAGCCCACCTCGGAG 59.734 66.667 0.00 0.00 43.82 4.63
3135 7457 2.525629 TGTTGAGCCCACCTCGGA 60.526 61.111 0.00 0.00 43.82 4.55
3136 7458 2.358737 GTGTTGAGCCCACCTCGG 60.359 66.667 0.00 0.00 43.82 4.63
3137 7459 1.071471 AAGTGTTGAGCCCACCTCG 59.929 57.895 0.00 0.00 43.82 4.63
3138 7460 0.108585 TCAAGTGTTGAGCCCACCTC 59.891 55.000 0.00 0.00 41.15 3.85
3139 7461 2.230664 TCAAGTGTTGAGCCCACCT 58.769 52.632 0.00 0.00 34.08 4.00
3140 7462 4.898607 TCAAGTGTTGAGCCCACC 57.101 55.556 0.00 0.00 34.08 4.61
3147 7469 1.347707 CCTAGTGGGCTCAAGTGTTGA 59.652 52.381 0.00 0.00 38.17 3.18
3148 7470 1.347707 TCCTAGTGGGCTCAAGTGTTG 59.652 52.381 0.00 0.00 34.39 3.33
3149 7471 1.625818 CTCCTAGTGGGCTCAAGTGTT 59.374 52.381 0.00 0.00 34.39 3.32
3150 7472 1.270907 CTCCTAGTGGGCTCAAGTGT 58.729 55.000 0.00 0.00 34.39 3.55
3151 7473 0.107945 GCTCCTAGTGGGCTCAAGTG 60.108 60.000 0.00 0.00 34.39 3.16
3152 7474 1.268283 GGCTCCTAGTGGGCTCAAGT 61.268 60.000 0.00 0.00 34.39 3.16
3153 7475 1.524482 GGCTCCTAGTGGGCTCAAG 59.476 63.158 0.00 0.00 34.39 3.02
3154 7476 1.995626 GGGCTCCTAGTGGGCTCAA 60.996 63.158 0.00 0.00 32.51 3.02
3155 7477 2.365635 GGGCTCCTAGTGGGCTCA 60.366 66.667 3.51 0.00 32.51 4.26
3156 7478 2.365635 TGGGCTCCTAGTGGGCTC 60.366 66.667 3.51 0.14 32.75 4.70
3157 7479 2.689034 GTGGGCTCCTAGTGGGCT 60.689 66.667 3.51 0.00 34.39 5.19
3158 7480 2.378634 ATGTGGGCTCCTAGTGGGC 61.379 63.158 0.00 0.00 34.39 5.36
3159 7481 4.073201 ATGTGGGCTCCTAGTGGG 57.927 61.111 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.