Multiple sequence alignment - TraesCS7D01G055300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G055300 chr7D 100.000 3572 0 0 1 3572 29699138 29695567 0.000000e+00 6597.0
1 TraesCS7D01G055300 chr7D 93.592 2809 129 22 796 3572 29677068 29674279 0.000000e+00 4143.0
2 TraesCS7D01G055300 chr7D 83.173 208 31 4 227 433 98035406 98035202 1.690000e-43 187.0
3 TraesCS7D01G055300 chr7D 100.000 31 0 0 639 669 34998185 34998155 1.390000e-04 58.4
4 TraesCS7D01G055300 chr3A 87.142 1711 174 26 858 2556 81483684 81482008 0.000000e+00 1899.0
5 TraesCS7D01G055300 chr3A 87.010 1709 179 26 858 2556 81662793 81664468 0.000000e+00 1886.0
6 TraesCS7D01G055300 chr3A 84.520 323 46 4 378 697 65821660 65821981 2.070000e-82 316.0
7 TraesCS7D01G055300 chr3B 86.333 1778 192 28 852 2624 116080757 116082488 0.000000e+00 1890.0
8 TraesCS7D01G055300 chr3B 86.819 1707 184 24 854 2556 116010435 116008766 0.000000e+00 1868.0
9 TraesCS7D01G055300 chr3B 88.312 231 24 2 208 436 6224815 6225044 1.260000e-69 274.0
10 TraesCS7D01G055300 chr3B 84.249 273 42 1 348 620 27271380 27271651 7.600000e-67 265.0
11 TraesCS7D01G055300 chr3B 81.250 112 19 2 2105 2215 766178791 766178681 4.910000e-14 89.8
12 TraesCS7D01G055300 chr3D 87.192 1663 177 24 902 2556 70228740 70230374 0.000000e+00 1858.0
13 TraesCS7D01G055300 chr3D 86.495 1666 188 21 900 2552 69907818 69906177 0.000000e+00 1796.0
14 TraesCS7D01G055300 chr3D 81.837 490 53 18 854 1341 69915591 69915136 2.600000e-101 379.0
15 TraesCS7D01G055300 chr4D 82.439 615 78 18 207 801 92660381 92660985 8.850000e-141 510.0
16 TraesCS7D01G055300 chr1D 81.135 599 84 9 207 799 379894786 379895361 1.510000e-123 453.0
17 TraesCS7D01G055300 chr4B 83.596 445 66 2 364 801 21945209 21945653 9.230000e-111 411.0
18 TraesCS7D01G055300 chr7B 81.655 447 75 7 210 653 55606013 55605571 7.290000e-97 364.0
19 TraesCS7D01G055300 chr4A 80.665 481 80 5 204 680 576581814 576581343 9.430000e-96 361.0
20 TraesCS7D01G055300 chr4A 94.737 57 3 0 2981 3037 415468538 415468594 4.910000e-14 89.8
21 TraesCS7D01G055300 chrUn 88.312 231 24 2 208 436 36063764 36063535 1.260000e-69 274.0
22 TraesCS7D01G055300 chrUn 88.312 231 24 2 208 436 459416864 459417093 1.260000e-69 274.0
23 TraesCS7D01G055300 chrUn 83.929 280 39 6 378 653 334711081 334711358 2.730000e-66 263.0
24 TraesCS7D01G055300 chrUn 82.971 276 47 0 378 653 36063551 36063276 2.130000e-62 250.0
25 TraesCS7D01G055300 chrUn 82.971 276 47 0 378 653 459417077 459417352 2.130000e-62 250.0
26 TraesCS7D01G055300 chr7A 80.986 142 26 1 2995 3136 730557221 730557081 1.050000e-20 111.0
27 TraesCS7D01G055300 chr2B 90.909 66 6 0 2972 3037 6982774 6982839 4.910000e-14 89.8
28 TraesCS7D01G055300 chr2B 93.220 59 4 0 2981 3039 729196343 729196401 1.770000e-13 87.9
29 TraesCS7D01G055300 chr2B 91.803 61 5 0 2977 3037 167835523 167835583 6.350000e-13 86.1
30 TraesCS7D01G055300 chr2D 93.220 59 4 0 2980 3038 639082581 639082523 1.770000e-13 87.9
31 TraesCS7D01G055300 chr1A 94.643 56 3 0 2982 3037 541318626 541318571 1.770000e-13 87.9
32 TraesCS7D01G055300 chr5B 93.103 58 4 0 2982 3039 533109913 533109856 6.350000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G055300 chr7D 29695567 29699138 3571 True 6597 6597 100.000 1 3572 1 chr7D.!!$R2 3571
1 TraesCS7D01G055300 chr7D 29674279 29677068 2789 True 4143 4143 93.592 796 3572 1 chr7D.!!$R1 2776
2 TraesCS7D01G055300 chr3A 81482008 81483684 1676 True 1899 1899 87.142 858 2556 1 chr3A.!!$R1 1698
3 TraesCS7D01G055300 chr3A 81662793 81664468 1675 False 1886 1886 87.010 858 2556 1 chr3A.!!$F2 1698
4 TraesCS7D01G055300 chr3B 116080757 116082488 1731 False 1890 1890 86.333 852 2624 1 chr3B.!!$F3 1772
5 TraesCS7D01G055300 chr3B 116008766 116010435 1669 True 1868 1868 86.819 854 2556 1 chr3B.!!$R1 1702
6 TraesCS7D01G055300 chr3D 70228740 70230374 1634 False 1858 1858 87.192 902 2556 1 chr3D.!!$F1 1654
7 TraesCS7D01G055300 chr3D 69906177 69907818 1641 True 1796 1796 86.495 900 2552 1 chr3D.!!$R1 1652
8 TraesCS7D01G055300 chr4D 92660381 92660985 604 False 510 510 82.439 207 801 1 chr4D.!!$F1 594
9 TraesCS7D01G055300 chr1D 379894786 379895361 575 False 453 453 81.135 207 799 1 chr1D.!!$F1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.032267 CCGAACTAAGCCGAGGGATC 59.968 60.0 0.00 0.0 0.0 3.36 F
708 712 0.111832 TGTGGTCCGGACTACTCAGT 59.888 55.0 39.82 0.0 42.4 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1293 1328 0.878523 TGAAGTTGGCCGTGAAGACG 60.879 55.0 0.00 0.00 45.67 4.18 R
2578 2628 0.670546 GCATCGGCAGGCATACGTAT 60.671 55.0 1.14 1.14 40.72 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.996024 AAAATCCAAAATATACTGAAAACCGG 57.004 30.769 0.00 0.00 0.00 5.28
49 50 7.712204 AATCCAAAATATACTGAAAACCGGT 57.288 32.000 0.00 0.00 38.16 5.28
50 51 6.503589 TCCAAAATATACTGAAAACCGGTG 57.496 37.500 8.52 0.00 35.60 4.94
51 52 6.239396 TCCAAAATATACTGAAAACCGGTGA 58.761 36.000 8.52 0.00 35.60 4.02
52 53 6.887545 TCCAAAATATACTGAAAACCGGTGAT 59.112 34.615 8.52 0.00 35.60 3.06
53 54 7.394923 TCCAAAATATACTGAAAACCGGTGATT 59.605 33.333 8.52 6.75 35.60 2.57
54 55 8.032451 CCAAAATATACTGAAAACCGGTGATTT 58.968 33.333 8.52 5.76 34.86 2.17
55 56 9.072294 CAAAATATACTGAAAACCGGTGATTTC 57.928 33.333 20.28 20.28 33.51 2.17
56 57 7.931578 AATATACTGAAAACCGGTGATTTCA 57.068 32.000 25.51 25.51 41.78 2.69
59 60 1.611491 TGAAAACCGGTGATTTCAGCC 59.389 47.619 24.15 5.96 39.81 4.85
60 61 0.966179 AAAACCGGTGATTTCAGCCC 59.034 50.000 8.52 0.00 40.99 5.19
61 62 0.178975 AAACCGGTGATTTCAGCCCA 60.179 50.000 8.52 0.00 40.99 5.36
62 63 0.039618 AACCGGTGATTTCAGCCCAT 59.960 50.000 8.52 0.00 40.99 4.00
63 64 0.394352 ACCGGTGATTTCAGCCCATC 60.394 55.000 6.12 0.00 40.99 3.51
64 65 1.103398 CCGGTGATTTCAGCCCATCC 61.103 60.000 0.00 0.00 40.99 3.51
65 66 1.103398 CGGTGATTTCAGCCCATCCC 61.103 60.000 4.31 0.00 40.99 3.85
66 67 0.756815 GGTGATTTCAGCCCATCCCC 60.757 60.000 0.00 0.00 38.34 4.81
67 68 0.033208 GTGATTTCAGCCCATCCCCA 60.033 55.000 0.00 0.00 0.00 4.96
68 69 0.709397 TGATTTCAGCCCATCCCCAA 59.291 50.000 0.00 0.00 0.00 4.12
69 70 1.078490 TGATTTCAGCCCATCCCCAAA 59.922 47.619 0.00 0.00 0.00 3.28
70 71 2.187100 GATTTCAGCCCATCCCCAAAA 58.813 47.619 0.00 0.00 0.00 2.44
71 72 2.109229 TTTCAGCCCATCCCCAAAAA 57.891 45.000 0.00 0.00 0.00 1.94
94 95 9.607988 AAAAACATTCGGAATAAAAGAAAACCT 57.392 25.926 2.35 0.00 0.00 3.50
95 96 9.607988 AAAACATTCGGAATAAAAGAAAACCTT 57.392 25.926 2.35 0.00 36.47 3.50
96 97 8.587952 AACATTCGGAATAAAAGAAAACCTTG 57.412 30.769 2.35 0.00 34.79 3.61
97 98 7.722363 ACATTCGGAATAAAAGAAAACCTTGT 58.278 30.769 2.35 0.00 34.79 3.16
98 99 7.651704 ACATTCGGAATAAAAGAAAACCTTGTG 59.348 33.333 2.35 0.00 34.79 3.33
99 100 5.525199 TCGGAATAAAAGAAAACCTTGTGC 58.475 37.500 0.00 0.00 34.79 4.57
100 101 5.300792 TCGGAATAAAAGAAAACCTTGTGCT 59.699 36.000 0.00 0.00 34.79 4.40
101 102 5.983118 CGGAATAAAAGAAAACCTTGTGCTT 59.017 36.000 0.00 0.00 34.79 3.91
102 103 6.143919 CGGAATAAAAGAAAACCTTGTGCTTC 59.856 38.462 0.00 0.00 34.79 3.86
103 104 6.423905 GGAATAAAAGAAAACCTTGTGCTTCC 59.576 38.462 0.00 0.00 34.79 3.46
104 105 4.817318 AAAAGAAAACCTTGTGCTTCCA 57.183 36.364 0.00 0.00 34.79 3.53
105 106 5.357742 AAAAGAAAACCTTGTGCTTCCAT 57.642 34.783 0.00 0.00 34.79 3.41
106 107 4.326504 AAGAAAACCTTGTGCTTCCATG 57.673 40.909 0.00 0.00 32.92 3.66
107 108 3.299503 AGAAAACCTTGTGCTTCCATGT 58.700 40.909 0.00 0.00 0.00 3.21
108 109 4.469657 AGAAAACCTTGTGCTTCCATGTA 58.530 39.130 0.00 0.00 0.00 2.29
109 110 4.892934 AGAAAACCTTGTGCTTCCATGTAA 59.107 37.500 0.00 0.00 0.00 2.41
110 111 4.853924 AAACCTTGTGCTTCCATGTAAG 57.146 40.909 0.00 0.00 0.00 2.34
111 112 3.508845 ACCTTGTGCTTCCATGTAAGT 57.491 42.857 0.00 0.00 0.00 2.24
112 113 3.149196 ACCTTGTGCTTCCATGTAAGTG 58.851 45.455 0.00 0.00 0.00 3.16
113 114 3.149196 CCTTGTGCTTCCATGTAAGTGT 58.851 45.455 0.00 0.00 0.00 3.55
114 115 3.569701 CCTTGTGCTTCCATGTAAGTGTT 59.430 43.478 0.00 0.00 0.00 3.32
115 116 4.037923 CCTTGTGCTTCCATGTAAGTGTTT 59.962 41.667 0.00 0.00 0.00 2.83
116 117 5.451798 CCTTGTGCTTCCATGTAAGTGTTTT 60.452 40.000 0.00 0.00 0.00 2.43
117 118 5.590530 TGTGCTTCCATGTAAGTGTTTTT 57.409 34.783 0.00 0.00 0.00 1.94
118 119 5.347342 TGTGCTTCCATGTAAGTGTTTTTG 58.653 37.500 0.00 0.00 0.00 2.44
119 120 5.105554 TGTGCTTCCATGTAAGTGTTTTTGT 60.106 36.000 0.00 0.00 0.00 2.83
120 121 6.095580 TGTGCTTCCATGTAAGTGTTTTTGTA 59.904 34.615 0.00 0.00 0.00 2.41
121 122 6.636850 GTGCTTCCATGTAAGTGTTTTTGTAG 59.363 38.462 0.00 0.00 0.00 2.74
122 123 6.544197 TGCTTCCATGTAAGTGTTTTTGTAGA 59.456 34.615 0.00 0.00 0.00 2.59
123 124 7.067615 TGCTTCCATGTAAGTGTTTTTGTAGAA 59.932 33.333 0.00 0.00 0.00 2.10
124 125 7.918562 GCTTCCATGTAAGTGTTTTTGTAGAAA 59.081 33.333 0.00 0.00 0.00 2.52
125 126 9.796120 CTTCCATGTAAGTGTTTTTGTAGAAAA 57.204 29.630 0.00 0.00 0.00 2.29
134 135 8.185003 AGTGTTTTTGTAGAAAAATGTCAAGC 57.815 30.769 13.01 0.74 41.83 4.01
135 136 8.034804 AGTGTTTTTGTAGAAAAATGTCAAGCT 58.965 29.630 13.01 0.77 41.83 3.74
136 137 9.296400 GTGTTTTTGTAGAAAAATGTCAAGCTA 57.704 29.630 13.01 0.00 41.83 3.32
147 148 9.230932 GAAAAATGTCAAGCTATCTTTATGAGC 57.769 33.333 0.00 0.00 36.42 4.26
148 149 6.874288 AATGTCAAGCTATCTTTATGAGCC 57.126 37.500 0.00 0.00 36.87 4.70
149 150 4.371786 TGTCAAGCTATCTTTATGAGCCG 58.628 43.478 0.00 0.00 36.87 5.52
150 151 4.099419 TGTCAAGCTATCTTTATGAGCCGA 59.901 41.667 0.00 0.00 36.87 5.54
151 152 4.683781 GTCAAGCTATCTTTATGAGCCGAG 59.316 45.833 0.00 0.00 36.87 4.63
152 153 3.951775 AGCTATCTTTATGAGCCGAGG 57.048 47.619 0.00 0.00 36.87 4.63
153 154 3.235200 AGCTATCTTTATGAGCCGAGGT 58.765 45.455 0.00 0.00 36.87 3.85
154 155 4.408276 AGCTATCTTTATGAGCCGAGGTA 58.592 43.478 0.00 0.00 36.87 3.08
155 156 5.020132 AGCTATCTTTATGAGCCGAGGTAT 58.980 41.667 0.00 0.00 36.87 2.73
156 157 5.482175 AGCTATCTTTATGAGCCGAGGTATT 59.518 40.000 0.00 0.00 36.87 1.89
157 158 6.014156 AGCTATCTTTATGAGCCGAGGTATTT 60.014 38.462 0.00 0.00 36.87 1.40
158 159 6.651225 GCTATCTTTATGAGCCGAGGTATTTT 59.349 38.462 0.00 0.00 0.00 1.82
159 160 7.173390 GCTATCTTTATGAGCCGAGGTATTTTT 59.827 37.037 0.00 0.00 0.00 1.94
160 161 9.706691 CTATCTTTATGAGCCGAGGTATTTTTA 57.293 33.333 0.00 0.00 0.00 1.52
161 162 8.608844 ATCTTTATGAGCCGAGGTATTTTTAG 57.391 34.615 0.00 0.00 0.00 1.85
162 163 7.562135 TCTTTATGAGCCGAGGTATTTTTAGT 58.438 34.615 0.00 0.00 0.00 2.24
163 164 7.709613 TCTTTATGAGCCGAGGTATTTTTAGTC 59.290 37.037 0.00 0.00 0.00 2.59
164 165 4.133013 TGAGCCGAGGTATTTTTAGTCC 57.867 45.455 0.00 0.00 0.00 3.85
165 166 3.121544 GAGCCGAGGTATTTTTAGTCCG 58.878 50.000 0.00 0.00 0.00 4.79
166 167 2.762327 AGCCGAGGTATTTTTAGTCCGA 59.238 45.455 0.00 0.00 0.00 4.55
167 168 3.196254 AGCCGAGGTATTTTTAGTCCGAA 59.804 43.478 0.00 0.00 0.00 4.30
168 169 3.308053 GCCGAGGTATTTTTAGTCCGAAC 59.692 47.826 0.00 0.00 0.00 3.95
169 170 4.752146 CCGAGGTATTTTTAGTCCGAACT 58.248 43.478 0.00 0.00 39.66 3.01
170 171 5.679638 GCCGAGGTATTTTTAGTCCGAACTA 60.680 44.000 0.00 0.00 36.92 2.24
171 172 6.332630 CCGAGGTATTTTTAGTCCGAACTAA 58.667 40.000 0.00 0.00 44.38 2.24
172 173 6.474751 CCGAGGTATTTTTAGTCCGAACTAAG 59.525 42.308 0.00 0.00 46.07 2.18
173 174 6.020041 CGAGGTATTTTTAGTCCGAACTAAGC 60.020 42.308 0.00 0.00 46.07 3.09
174 175 6.111382 AGGTATTTTTAGTCCGAACTAAGCC 58.889 40.000 0.00 0.00 46.07 4.35
175 176 5.006068 GGTATTTTTAGTCCGAACTAAGCCG 59.994 44.000 0.00 0.00 46.07 5.52
176 177 3.940209 TTTTAGTCCGAACTAAGCCGA 57.060 42.857 0.00 0.00 46.07 5.54
177 178 3.498927 TTTAGTCCGAACTAAGCCGAG 57.501 47.619 0.00 0.00 46.07 4.63
178 179 1.386533 TAGTCCGAACTAAGCCGAGG 58.613 55.000 0.00 0.00 35.02 4.63
179 180 1.141234 GTCCGAACTAAGCCGAGGG 59.859 63.158 0.00 0.00 0.00 4.30
180 181 1.000521 TCCGAACTAAGCCGAGGGA 60.001 57.895 0.00 0.00 0.00 4.20
181 182 0.396695 TCCGAACTAAGCCGAGGGAT 60.397 55.000 0.00 0.00 0.00 3.85
182 183 0.032267 CCGAACTAAGCCGAGGGATC 59.968 60.000 0.00 0.00 0.00 3.36
183 184 1.033574 CGAACTAAGCCGAGGGATCT 58.966 55.000 0.00 0.00 0.00 2.75
184 185 1.409427 CGAACTAAGCCGAGGGATCTT 59.591 52.381 0.00 0.00 0.00 2.40
185 186 2.799917 CGAACTAAGCCGAGGGATCTTG 60.800 54.545 0.00 0.00 0.00 3.02
186 187 1.867363 ACTAAGCCGAGGGATCTTGT 58.133 50.000 0.00 0.00 0.00 3.16
187 188 3.028094 ACTAAGCCGAGGGATCTTGTA 57.972 47.619 0.00 0.00 0.00 2.41
188 189 3.577919 ACTAAGCCGAGGGATCTTGTAT 58.422 45.455 0.00 0.00 0.00 2.29
189 190 3.967987 ACTAAGCCGAGGGATCTTGTATT 59.032 43.478 0.00 0.00 0.00 1.89
190 191 2.918712 AGCCGAGGGATCTTGTATTG 57.081 50.000 0.00 0.00 0.00 1.90
191 192 1.202698 AGCCGAGGGATCTTGTATTGC 60.203 52.381 0.00 0.00 0.00 3.56
192 193 1.884235 CCGAGGGATCTTGTATTGCC 58.116 55.000 0.00 0.00 0.00 4.52
193 194 1.140852 CCGAGGGATCTTGTATTGCCA 59.859 52.381 0.00 0.00 0.00 4.92
194 195 2.224621 CCGAGGGATCTTGTATTGCCAT 60.225 50.000 0.00 0.00 0.00 4.40
195 196 2.810274 CGAGGGATCTTGTATTGCCATG 59.190 50.000 0.00 0.00 0.00 3.66
196 197 3.745480 CGAGGGATCTTGTATTGCCATGT 60.745 47.826 0.00 0.00 0.00 3.21
197 198 3.559069 AGGGATCTTGTATTGCCATGTG 58.441 45.455 0.00 0.00 0.00 3.21
198 199 3.053395 AGGGATCTTGTATTGCCATGTGT 60.053 43.478 0.00 0.00 0.00 3.72
199 200 3.701040 GGGATCTTGTATTGCCATGTGTT 59.299 43.478 0.00 0.00 0.00 3.32
200 201 4.160252 GGGATCTTGTATTGCCATGTGTTT 59.840 41.667 0.00 0.00 0.00 2.83
201 202 5.337491 GGGATCTTGTATTGCCATGTGTTTT 60.337 40.000 0.00 0.00 0.00 2.43
202 203 5.577945 GGATCTTGTATTGCCATGTGTTTTG 59.422 40.000 0.00 0.00 0.00 2.44
203 204 4.880759 TCTTGTATTGCCATGTGTTTTGG 58.119 39.130 0.00 0.00 37.31 3.28
204 205 3.674528 TGTATTGCCATGTGTTTTGGG 57.325 42.857 0.00 0.00 34.66 4.12
205 206 2.301296 TGTATTGCCATGTGTTTTGGGG 59.699 45.455 0.00 0.00 34.66 4.96
212 213 2.524306 CATGTGTTTTGGGGCTTAGGA 58.476 47.619 0.00 0.00 0.00 2.94
229 230 1.215647 GACATCTCCAACGCCGACT 59.784 57.895 0.00 0.00 0.00 4.18
231 232 1.215382 CATCTCCAACGCCGACTCA 59.785 57.895 0.00 0.00 0.00 3.41
234 235 1.734477 CTCCAACGCCGACTCACAG 60.734 63.158 0.00 0.00 0.00 3.66
295 298 2.762535 CCAGACATGGTTACGGAAGT 57.237 50.000 0.00 0.00 44.73 3.01
318 321 1.056660 CCATCCAACCCTATACCGCT 58.943 55.000 0.00 0.00 0.00 5.52
331 334 2.389962 TACCGCTAATGTTCGCCTTT 57.610 45.000 0.00 0.00 0.00 3.11
439 443 2.424956 GCTAGCTTCCACCAAATGAAGG 59.575 50.000 7.70 0.00 38.69 3.46
449 453 5.010282 CCACCAAATGAAGGTACTAAGCTT 58.990 41.667 3.48 3.48 45.93 3.74
454 458 1.937278 GAAGGTACTAAGCTTCGCCC 58.063 55.000 0.00 0.21 46.84 6.13
462 466 3.031736 ACTAAGCTTCGCCCAATCTAGA 58.968 45.455 0.00 0.00 0.00 2.43
465 469 3.350219 AGCTTCGCCCAATCTAGAAAA 57.650 42.857 0.00 0.00 0.00 2.29
500 504 2.738846 AGCATAATTAGCATCTTCCGCG 59.261 45.455 0.00 0.00 0.00 6.46
517 521 1.318251 GCGAAATGCACAAACGTCTC 58.682 50.000 0.00 0.00 45.45 3.36
520 524 1.606668 GAAATGCACAAACGTCTCCCA 59.393 47.619 0.00 0.00 0.00 4.37
521 525 1.909700 AATGCACAAACGTCTCCCAT 58.090 45.000 0.00 0.00 0.00 4.00
539 543 3.071892 CCCATACTACCTTCCGCCAAATA 59.928 47.826 0.00 0.00 0.00 1.40
586 590 2.428171 GCCAAATGCTAGCCATTCTGAA 59.572 45.455 13.29 0.00 43.22 3.02
589 593 2.988010 ATGCTAGCCATTCTGAACGA 57.012 45.000 13.29 0.00 0.00 3.85
592 596 2.289382 TGCTAGCCATTCTGAACGAACA 60.289 45.455 13.29 0.00 33.72 3.18
601 605 3.917329 TCTGAACGAACACAGAGTAGG 57.083 47.619 0.00 0.00 38.08 3.18
606 610 1.162698 CGAACACAGAGTAGGGACGA 58.837 55.000 0.00 0.00 0.00 4.20
655 659 0.882927 CTGTCCGAACTCCCGCAAAA 60.883 55.000 0.00 0.00 0.00 2.44
660 664 1.228459 GAACTCCCGCAAAACCCCT 60.228 57.895 0.00 0.00 0.00 4.79
672 676 2.688958 CAAAACCCCTCACGTTTGGTTA 59.311 45.455 7.88 0.00 40.10 2.85
677 681 2.037511 CCCCTCACGTTTGGTTACAGTA 59.962 50.000 0.00 0.00 0.00 2.74
681 685 3.068560 TCACGTTTGGTTACAGTATGCC 58.931 45.455 0.00 0.00 42.53 4.40
682 686 2.160813 CACGTTTGGTTACAGTATGCCC 59.839 50.000 0.00 0.00 42.53 5.36
689 693 4.337145 TGGTTACAGTATGCCCGAAAAAT 58.663 39.130 0.00 0.00 42.53 1.82
701 705 1.519408 CGAAAAATGTGGTCCGGACT 58.481 50.000 32.52 11.62 0.00 3.85
702 706 2.613474 CCGAAAAATGTGGTCCGGACTA 60.613 50.000 32.52 25.88 39.31 2.59
706 710 1.933021 AATGTGGTCCGGACTACTCA 58.067 50.000 39.82 27.35 42.40 3.41
707 711 1.475403 ATGTGGTCCGGACTACTCAG 58.525 55.000 39.82 0.00 42.40 3.35
708 712 0.111832 TGTGGTCCGGACTACTCAGT 59.888 55.000 39.82 0.00 42.40 3.41
714 724 4.141321 TGGTCCGGACTACTCAGTATACAT 60.141 45.833 32.52 0.00 34.21 2.29
726 736 1.202486 AGTATACATGACCGCGTTGGG 60.202 52.381 4.92 0.00 44.64 4.12
747 764 0.653636 GACAAACTGCGTCCGAACAA 59.346 50.000 0.00 0.00 0.00 2.83
748 765 1.263217 GACAAACTGCGTCCGAACAAT 59.737 47.619 0.00 0.00 0.00 2.71
749 766 1.002900 ACAAACTGCGTCCGAACAATG 60.003 47.619 0.00 0.00 0.00 2.82
761 778 2.235536 GAACAATGCGGTCCGAACGG 62.236 60.000 17.49 6.94 0.00 4.44
764 781 1.015085 CAATGCGGTCCGAACGGTTA 61.015 55.000 17.49 0.00 36.47 2.85
767 784 2.560861 CGGTCCGAACGGTTACGA 59.439 61.111 4.91 0.92 44.60 3.43
774 791 1.611043 CGAACGGTTACGAGAGGTTC 58.389 55.000 0.00 0.00 44.60 3.62
811 828 1.678101 GATGCCCTTATGCCAGAACAC 59.322 52.381 0.00 0.00 0.00 3.32
832 849 8.458573 AACACTATGTAACATGAGTTTTTCCA 57.541 30.769 0.00 0.00 39.15 3.53
842 859 2.364970 TGAGTTTTTCCAATGGTGGCTG 59.635 45.455 0.00 0.00 45.54 4.85
847 864 1.186917 TTCCAATGGTGGCTGCCTTG 61.187 55.000 21.03 15.07 45.54 3.61
856 881 2.793946 GCTGCCTTGCCATACACG 59.206 61.111 0.00 0.00 0.00 4.49
867 892 4.729227 TGCCATACACGAAATCTCTACA 57.271 40.909 0.00 0.00 0.00 2.74
868 893 4.430007 TGCCATACACGAAATCTCTACAC 58.570 43.478 0.00 0.00 0.00 2.90
869 894 3.802685 GCCATACACGAAATCTCTACACC 59.197 47.826 0.00 0.00 0.00 4.16
870 895 4.042398 CCATACACGAAATCTCTACACCG 58.958 47.826 0.00 0.00 0.00 4.94
871 896 4.439700 CCATACACGAAATCTCTACACCGT 60.440 45.833 0.00 0.00 0.00 4.83
884 911 3.900601 TCTACACCGTACCTAACCCAAAA 59.099 43.478 0.00 0.00 0.00 2.44
887 914 1.773653 ACCGTACCTAACCCAAAACCA 59.226 47.619 0.00 0.00 0.00 3.67
1202 1237 2.741092 GGTCACCGAGTTCCTGCA 59.259 61.111 0.00 0.00 0.00 4.41
1209 1244 2.360475 GAGTTCCTGCAGGTGGCC 60.360 66.667 31.58 17.24 43.89 5.36
1228 1263 4.429212 CGGGGATGTCGCACGTCA 62.429 66.667 9.66 0.00 35.87 4.35
1236 1271 3.770040 TCGCACGTCATCAGGGGG 61.770 66.667 0.00 0.00 0.00 5.40
1312 1347 0.878523 CGTCTTCACGGCCAACTTCA 60.879 55.000 2.24 0.00 42.73 3.02
1684 1719 2.544726 GTGCTGTTCTACAGGCACC 58.455 57.895 16.50 1.25 46.01 5.01
1710 1745 2.125512 GTACCGTGGCTGAGGCTG 60.126 66.667 7.74 0.00 38.73 4.85
1832 1873 3.206246 CCGTGCCAACACCAACGT 61.206 61.111 0.00 0.00 44.40 3.99
1879 1929 1.072332 ACGTTGTACCTGGCATGCA 59.928 52.632 21.36 4.79 0.00 3.96
2064 2114 0.874607 GTGAGAACGCAACGTCTGGT 60.875 55.000 0.00 0.00 39.99 4.00
2370 2420 0.248990 AGTTCGTGGCGTTCAACGTA 60.249 50.000 12.40 0.00 44.73 3.57
2424 2474 2.125512 ACGCAGATGAAGGCCGTC 60.126 61.111 12.27 12.27 0.00 4.79
2461 2511 2.273179 CGGTTCAGGGTCGAGGTCA 61.273 63.158 0.00 0.00 0.00 4.02
2578 2628 5.068723 GCACTAAGTACAATCTAGGGCTACA 59.931 44.000 9.87 0.00 34.59 2.74
2585 2635 7.173722 AGTACAATCTAGGGCTACATACGTAT 58.826 38.462 1.14 1.14 0.00 3.06
2586 2636 6.268825 ACAATCTAGGGCTACATACGTATG 57.731 41.667 29.48 29.48 39.55 2.39
2587 2637 4.985538 ATCTAGGGCTACATACGTATGC 57.014 45.455 30.68 19.19 37.19 3.14
2588 2638 3.087031 TCTAGGGCTACATACGTATGCC 58.913 50.000 30.68 25.75 39.37 4.40
2721 2774 1.714794 CGGCTTTGTCTGAGTGGTAG 58.285 55.000 0.00 0.00 0.00 3.18
2722 2775 1.000955 CGGCTTTGTCTGAGTGGTAGT 59.999 52.381 0.00 0.00 0.00 2.73
2723 2776 2.417719 GGCTTTGTCTGAGTGGTAGTG 58.582 52.381 0.00 0.00 0.00 2.74
2724 2777 2.224305 GGCTTTGTCTGAGTGGTAGTGT 60.224 50.000 0.00 0.00 0.00 3.55
2728 2781 5.509163 GCTTTGTCTGAGTGGTAGTGTAGAA 60.509 44.000 0.00 0.00 0.00 2.10
2831 2899 2.410785 TCTGACGTGGTTGTTACTCG 57.589 50.000 0.00 0.00 0.00 4.18
2835 2903 3.311106 TGACGTGGTTGTTACTCGATTC 58.689 45.455 0.00 0.00 0.00 2.52
2874 2942 0.525668 AAGCACGGAAGAGATACGCG 60.526 55.000 3.53 3.53 39.78 6.01
2877 2945 0.098200 CACGGAAGAGATACGCGTCA 59.902 55.000 18.63 2.34 39.78 4.35
2891 2959 2.612212 ACGCGTCACAAAAATCTGTCTT 59.388 40.909 5.58 0.00 0.00 3.01
2898 2966 5.395486 GTCACAAAAATCTGTCTTTGTACGC 59.605 40.000 0.26 0.00 42.41 4.42
2899 2967 5.065346 TCACAAAAATCTGTCTTTGTACGCA 59.935 36.000 0.26 0.00 42.41 5.24
2931 3000 1.354337 CTCCTGCATGTGTTCGTCGG 61.354 60.000 0.00 0.00 0.00 4.79
2951 3020 4.816984 TCGAGTCTCGGGCTCCCC 62.817 72.222 21.63 0.00 40.88 4.81
2968 3037 4.424566 CAAGGCGGTGCATGGTGC 62.425 66.667 0.00 0.00 45.29 5.01
2981 3050 2.938756 GCATGGTGCCAGATATAGGAGC 60.939 54.545 0.00 0.00 37.42 4.70
2986 3055 1.132721 TGCCAGATATAGGAGCAGGGT 60.133 52.381 0.00 0.00 0.00 4.34
3000 3069 1.407437 GCAGGGTCGGTCATGAGATTT 60.407 52.381 0.00 0.00 0.00 2.17
3010 3079 2.120909 ATGAGATTTTGGCGGCCCG 61.121 57.895 17.97 0.00 0.00 6.13
3028 3097 0.441145 CGGGGCGAAACTAAAACTCG 59.559 55.000 0.00 0.00 35.70 4.18
3035 3104 0.251474 AAACTAAAACTCGGGGCCCC 60.251 55.000 33.22 33.22 0.00 5.80
3082 3151 7.216494 TGTCAACTCAAAGTCACTTATGATGA 58.784 34.615 0.00 0.00 37.14 2.92
3086 3155 8.509690 CAACTCAAAGTCACTTATGATGATGTT 58.490 33.333 0.00 0.00 37.14 2.71
3100 3169 4.915809 TGATGATGTTATCCTGGATCCCTT 59.084 41.667 13.54 3.23 0.00 3.95
3101 3170 4.982241 TGATGTTATCCTGGATCCCTTC 57.018 45.455 13.54 12.15 0.00 3.46
3102 3171 4.570926 TGATGTTATCCTGGATCCCTTCT 58.429 43.478 13.54 0.00 0.00 2.85
3116 3185 1.272807 CCTTCTCCTCCGGGTTGTAA 58.727 55.000 0.00 0.00 0.00 2.41
3136 3205 0.735287 GAAGGTGAACGTAGACGCCC 60.735 60.000 13.59 0.00 44.43 6.13
3144 3213 4.919987 GTAGACGCCCCGCTACGC 62.920 72.222 0.00 0.00 31.44 4.42
3162 3231 0.606401 GCAAGGTAGACAGCAAGGCA 60.606 55.000 0.00 0.00 0.00 4.75
3164 3233 0.322008 AAGGTAGACAGCAAGGCAGC 60.322 55.000 0.00 0.00 0.00 5.25
3167 3236 0.460987 GTAGACAGCAAGGCAGCGAT 60.461 55.000 0.00 0.00 40.15 4.58
3168 3237 0.460811 TAGACAGCAAGGCAGCGATG 60.461 55.000 0.00 0.00 40.15 3.84
3174 3243 4.393155 AAGGCAGCGATGGCGTCA 62.393 61.111 21.99 0.00 46.35 4.35
3187 3256 1.648467 GGCGTCATTCACAAGGAGCC 61.648 60.000 0.00 0.00 36.32 4.70
3217 3290 2.240414 TCATGGGAGCATCAAGTGTGAT 59.760 45.455 0.00 0.00 45.80 3.06
3220 3293 2.093288 TGGGAGCATCAAGTGTGATCTC 60.093 50.000 0.00 0.00 42.88 2.75
3223 3296 3.433314 GGAGCATCAAGTGTGATCTCCAT 60.433 47.826 19.45 0.00 45.82 3.41
3252 3326 3.685265 CGGGACCTCATTCAATGGAATCA 60.685 47.826 0.00 0.00 41.78 2.57
3261 3335 7.990886 CCTCATTCAATGGAATCATTTTGGATT 59.009 33.333 0.00 0.00 41.78 3.01
3270 3344 5.499139 AATCATTTTGGATTGCGACGTAT 57.501 34.783 0.00 0.00 36.20 3.06
3273 3347 5.092105 TCATTTTGGATTGCGACGTATTTG 58.908 37.500 0.00 0.00 0.00 2.32
3303 3377 7.637907 GTTCTTATAGTGAGAACCGTTAGTACG 59.362 40.741 5.86 0.00 44.50 3.67
3304 3378 6.818644 TCTTATAGTGAGAACCGTTAGTACGT 59.181 38.462 0.00 0.00 46.20 3.57
3305 3379 7.979537 TCTTATAGTGAGAACCGTTAGTACGTA 59.020 37.037 0.00 0.00 46.20 3.57
3306 3380 8.662781 TTATAGTGAGAACCGTTAGTACGTAT 57.337 34.615 0.00 0.00 46.20 3.06
3307 3381 9.758651 TTATAGTGAGAACCGTTAGTACGTATA 57.241 33.333 0.00 0.00 46.20 1.47
3308 3382 6.351327 AGTGAGAACCGTTAGTACGTATAC 57.649 41.667 0.00 0.00 46.20 1.47
3309 3383 5.294552 AGTGAGAACCGTTAGTACGTATACC 59.705 44.000 0.00 0.00 46.20 2.73
3329 3403 1.583054 GCCTCCGTGTCATCAATACC 58.417 55.000 0.00 0.00 0.00 2.73
3444 3518 6.043012 TCCAATCCAACAATTCAAACAAGGAT 59.957 34.615 0.00 0.00 36.25 3.24
3471 3545 5.490139 AAACAGAAGGATGAATATGCACG 57.510 39.130 0.00 0.00 0.00 5.34
3481 3555 7.995289 AGGATGAATATGCACGTCAATTTTAA 58.005 30.769 0.00 0.00 0.00 1.52
3543 3617 1.529010 CCAGTGTTGCTTCCCTGCA 60.529 57.895 0.00 0.00 41.65 4.41
3549 3623 2.028748 GTGTTGCTTCCCTGCATGAATT 60.029 45.455 0.00 0.00 42.96 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.430623 CCGGTTTTCAGTATATTTTGGATTTTT 57.569 29.630 0.00 0.00 0.00 1.94
23 24 8.590204 ACCGGTTTTCAGTATATTTTGGATTTT 58.410 29.630 0.00 0.00 0.00 1.82
24 25 8.032451 CACCGGTTTTCAGTATATTTTGGATTT 58.968 33.333 2.97 0.00 0.00 2.17
25 26 7.394923 TCACCGGTTTTCAGTATATTTTGGATT 59.605 33.333 2.97 0.00 0.00 3.01
26 27 6.887545 TCACCGGTTTTCAGTATATTTTGGAT 59.112 34.615 2.97 0.00 0.00 3.41
27 28 6.239396 TCACCGGTTTTCAGTATATTTTGGA 58.761 36.000 2.97 0.00 0.00 3.53
28 29 6.503589 TCACCGGTTTTCAGTATATTTTGG 57.496 37.500 2.97 0.00 0.00 3.28
29 30 8.980143 AAATCACCGGTTTTCAGTATATTTTG 57.020 30.769 2.97 0.00 0.00 2.44
30 31 8.798402 TGAAATCACCGGTTTTCAGTATATTTT 58.202 29.630 24.15 4.56 37.64 1.82
31 32 8.343168 TGAAATCACCGGTTTTCAGTATATTT 57.657 30.769 24.15 11.05 37.64 1.40
32 33 7.931578 TGAAATCACCGGTTTTCAGTATATT 57.068 32.000 24.15 4.38 37.64 1.28
33 34 7.553881 CTGAAATCACCGGTTTTCAGTATAT 57.446 36.000 34.14 8.56 46.30 0.86
34 35 6.978343 CTGAAATCACCGGTTTTCAGTATA 57.022 37.500 34.14 16.22 46.30 1.47
35 36 5.880054 CTGAAATCACCGGTTTTCAGTAT 57.120 39.130 34.14 9.71 46.30 2.12
39 40 1.611491 GGCTGAAATCACCGGTTTTCA 59.389 47.619 25.51 25.51 39.29 2.69
40 41 1.067846 GGGCTGAAATCACCGGTTTTC 60.068 52.381 20.28 20.28 34.66 2.29
41 42 0.966179 GGGCTGAAATCACCGGTTTT 59.034 50.000 2.97 3.54 0.00 2.43
42 43 0.178975 TGGGCTGAAATCACCGGTTT 60.179 50.000 2.97 0.00 0.00 3.27
43 44 0.039618 ATGGGCTGAAATCACCGGTT 59.960 50.000 2.97 0.00 0.00 4.44
44 45 0.394352 GATGGGCTGAAATCACCGGT 60.394 55.000 0.00 0.00 0.00 5.28
45 46 1.103398 GGATGGGCTGAAATCACCGG 61.103 60.000 0.00 0.00 0.00 5.28
46 47 1.103398 GGGATGGGCTGAAATCACCG 61.103 60.000 0.00 0.00 0.00 4.94
47 48 0.756815 GGGGATGGGCTGAAATCACC 60.757 60.000 0.00 0.00 39.14 4.02
48 49 0.033208 TGGGGATGGGCTGAAATCAC 60.033 55.000 0.00 0.00 0.00 3.06
49 50 0.709397 TTGGGGATGGGCTGAAATCA 59.291 50.000 0.00 0.00 0.00 2.57
50 51 1.864669 TTTGGGGATGGGCTGAAATC 58.135 50.000 0.00 0.00 0.00 2.17
51 52 2.340721 TTTTGGGGATGGGCTGAAAT 57.659 45.000 0.00 0.00 0.00 2.17
52 53 2.109229 TTTTTGGGGATGGGCTGAAA 57.891 45.000 0.00 0.00 0.00 2.69
53 54 3.880174 TTTTTGGGGATGGGCTGAA 57.120 47.368 0.00 0.00 0.00 3.02
68 69 9.607988 AGGTTTTCTTTTATTCCGAATGTTTTT 57.392 25.926 3.73 0.00 0.00 1.94
69 70 9.607988 AAGGTTTTCTTTTATTCCGAATGTTTT 57.392 25.926 3.73 0.00 29.99 2.43
70 71 9.040939 CAAGGTTTTCTTTTATTCCGAATGTTT 57.959 29.630 3.73 0.00 32.41 2.83
71 72 8.201464 ACAAGGTTTTCTTTTATTCCGAATGTT 58.799 29.630 3.73 0.00 32.41 2.71
72 73 7.651704 CACAAGGTTTTCTTTTATTCCGAATGT 59.348 33.333 3.73 0.00 32.41 2.71
73 74 7.359181 GCACAAGGTTTTCTTTTATTCCGAATG 60.359 37.037 3.73 0.00 32.41 2.67
74 75 6.645003 GCACAAGGTTTTCTTTTATTCCGAAT 59.355 34.615 0.00 0.00 32.41 3.34
75 76 5.980715 GCACAAGGTTTTCTTTTATTCCGAA 59.019 36.000 0.00 0.00 32.41 4.30
76 77 5.300792 AGCACAAGGTTTTCTTTTATTCCGA 59.699 36.000 0.00 0.00 32.41 4.55
77 78 5.528870 AGCACAAGGTTTTCTTTTATTCCG 58.471 37.500 0.00 0.00 32.41 4.30
78 79 6.423905 GGAAGCACAAGGTTTTCTTTTATTCC 59.576 38.462 0.00 0.00 35.19 3.01
79 80 6.983890 TGGAAGCACAAGGTTTTCTTTTATTC 59.016 34.615 0.00 0.00 35.19 1.75
80 81 6.883744 TGGAAGCACAAGGTTTTCTTTTATT 58.116 32.000 0.00 0.00 35.19 1.40
81 82 6.478512 TGGAAGCACAAGGTTTTCTTTTAT 57.521 33.333 0.00 0.00 35.19 1.40
82 83 5.923733 TGGAAGCACAAGGTTTTCTTTTA 57.076 34.783 0.00 0.00 35.19 1.52
83 84 4.817318 TGGAAGCACAAGGTTTTCTTTT 57.183 36.364 0.00 0.00 35.19 2.27
84 85 4.162131 ACATGGAAGCACAAGGTTTTCTTT 59.838 37.500 0.00 0.00 35.19 2.52
85 86 3.706086 ACATGGAAGCACAAGGTTTTCTT 59.294 39.130 0.00 0.00 35.19 2.52
86 87 3.299503 ACATGGAAGCACAAGGTTTTCT 58.700 40.909 0.00 0.00 35.19 2.52
87 88 3.733443 ACATGGAAGCACAAGGTTTTC 57.267 42.857 0.00 0.00 35.19 2.29
88 89 4.649218 ACTTACATGGAAGCACAAGGTTTT 59.351 37.500 18.04 0.00 35.19 2.43
89 90 4.037923 CACTTACATGGAAGCACAAGGTTT 59.962 41.667 18.04 0.00 35.19 3.27
90 91 3.569701 CACTTACATGGAAGCACAAGGTT 59.430 43.478 18.04 0.00 38.36 3.50
91 92 3.149196 CACTTACATGGAAGCACAAGGT 58.851 45.455 18.04 0.00 0.00 3.50
92 93 3.149196 ACACTTACATGGAAGCACAAGG 58.851 45.455 18.04 3.42 0.00 3.61
93 94 4.836125 AACACTTACATGGAAGCACAAG 57.164 40.909 18.04 5.49 0.00 3.16
94 95 5.590530 AAAACACTTACATGGAAGCACAA 57.409 34.783 18.04 0.00 0.00 3.33
95 96 5.105554 ACAAAAACACTTACATGGAAGCACA 60.106 36.000 18.04 0.00 0.00 4.57
96 97 5.348164 ACAAAAACACTTACATGGAAGCAC 58.652 37.500 18.04 0.00 0.00 4.40
97 98 5.590530 ACAAAAACACTTACATGGAAGCA 57.409 34.783 18.04 0.00 0.00 3.91
98 99 6.966021 TCTACAAAAACACTTACATGGAAGC 58.034 36.000 18.04 0.00 0.00 3.86
99 100 9.796120 TTTTCTACAAAAACACTTACATGGAAG 57.204 29.630 16.53 16.53 0.00 3.46
108 109 8.655970 GCTTGACATTTTTCTACAAAAACACTT 58.344 29.630 0.00 0.00 42.87 3.16
109 110 8.034804 AGCTTGACATTTTTCTACAAAAACACT 58.965 29.630 0.00 0.00 42.87 3.55
110 111 8.185003 AGCTTGACATTTTTCTACAAAAACAC 57.815 30.769 0.00 0.00 42.87 3.32
121 122 9.230932 GCTCATAAAGATAGCTTGACATTTTTC 57.769 33.333 0.00 0.00 33.79 2.29
122 123 8.193438 GGCTCATAAAGATAGCTTGACATTTTT 58.807 33.333 0.00 0.00 36.48 1.94
123 124 7.467811 CGGCTCATAAAGATAGCTTGACATTTT 60.468 37.037 0.00 0.00 36.48 1.82
124 125 6.017605 CGGCTCATAAAGATAGCTTGACATTT 60.018 38.462 0.00 0.00 36.48 2.32
125 126 5.468072 CGGCTCATAAAGATAGCTTGACATT 59.532 40.000 0.00 0.00 36.48 2.71
126 127 4.993584 CGGCTCATAAAGATAGCTTGACAT 59.006 41.667 0.00 0.00 36.48 3.06
127 128 4.099419 TCGGCTCATAAAGATAGCTTGACA 59.901 41.667 0.00 0.00 36.48 3.58
128 129 4.621991 TCGGCTCATAAAGATAGCTTGAC 58.378 43.478 0.00 0.00 36.48 3.18
129 130 4.262207 CCTCGGCTCATAAAGATAGCTTGA 60.262 45.833 0.00 0.00 36.48 3.02
130 131 3.993081 CCTCGGCTCATAAAGATAGCTTG 59.007 47.826 0.00 0.00 36.48 4.01
131 132 3.643792 ACCTCGGCTCATAAAGATAGCTT 59.356 43.478 0.00 0.00 36.48 3.74
132 133 3.235200 ACCTCGGCTCATAAAGATAGCT 58.765 45.455 0.00 0.00 36.48 3.32
133 134 3.669251 ACCTCGGCTCATAAAGATAGC 57.331 47.619 0.00 0.00 35.47 2.97
134 135 8.608844 AAAAATACCTCGGCTCATAAAGATAG 57.391 34.615 0.00 0.00 0.00 2.08
135 136 9.706691 CTAAAAATACCTCGGCTCATAAAGATA 57.293 33.333 0.00 0.00 0.00 1.98
136 137 8.211629 ACTAAAAATACCTCGGCTCATAAAGAT 58.788 33.333 0.00 0.00 0.00 2.40
137 138 7.562135 ACTAAAAATACCTCGGCTCATAAAGA 58.438 34.615 0.00 0.00 0.00 2.52
138 139 7.041984 GGACTAAAAATACCTCGGCTCATAAAG 60.042 40.741 0.00 0.00 0.00 1.85
139 140 6.764560 GGACTAAAAATACCTCGGCTCATAAA 59.235 38.462 0.00 0.00 0.00 1.40
140 141 6.285990 GGACTAAAAATACCTCGGCTCATAA 58.714 40.000 0.00 0.00 0.00 1.90
141 142 5.508489 CGGACTAAAAATACCTCGGCTCATA 60.508 44.000 0.00 0.00 0.00 2.15
142 143 4.704965 GGACTAAAAATACCTCGGCTCAT 58.295 43.478 0.00 0.00 0.00 2.90
143 144 3.429822 CGGACTAAAAATACCTCGGCTCA 60.430 47.826 0.00 0.00 0.00 4.26
144 145 3.121544 CGGACTAAAAATACCTCGGCTC 58.878 50.000 0.00 0.00 0.00 4.70
145 146 2.762327 TCGGACTAAAAATACCTCGGCT 59.238 45.455 0.00 0.00 0.00 5.52
146 147 3.169355 TCGGACTAAAAATACCTCGGC 57.831 47.619 0.00 0.00 0.00 5.54
147 148 4.752146 AGTTCGGACTAAAAATACCTCGG 58.248 43.478 0.00 0.00 33.32 4.63
148 149 6.020041 GCTTAGTTCGGACTAAAAATACCTCG 60.020 42.308 16.96 3.92 45.20 4.63
149 150 6.257411 GGCTTAGTTCGGACTAAAAATACCTC 59.743 42.308 16.96 0.60 45.20 3.85
150 151 6.111382 GGCTTAGTTCGGACTAAAAATACCT 58.889 40.000 16.96 0.00 45.20 3.08
151 152 5.006068 CGGCTTAGTTCGGACTAAAAATACC 59.994 44.000 16.96 11.86 45.20 2.73
152 153 5.807011 TCGGCTTAGTTCGGACTAAAAATAC 59.193 40.000 16.96 5.07 45.20 1.89
153 154 5.964758 TCGGCTTAGTTCGGACTAAAAATA 58.035 37.500 16.96 1.67 45.20 1.40
154 155 4.824289 TCGGCTTAGTTCGGACTAAAAAT 58.176 39.130 16.96 0.00 45.20 1.82
155 156 4.240096 CTCGGCTTAGTTCGGACTAAAAA 58.760 43.478 16.96 0.00 45.20 1.94
156 157 3.367703 CCTCGGCTTAGTTCGGACTAAAA 60.368 47.826 16.96 0.00 45.20 1.52
157 158 2.165030 CCTCGGCTTAGTTCGGACTAAA 59.835 50.000 16.96 1.94 45.20 1.85
158 159 1.747355 CCTCGGCTTAGTTCGGACTAA 59.253 52.381 15.53 15.53 44.09 2.24
159 160 1.386533 CCTCGGCTTAGTTCGGACTA 58.613 55.000 0.00 0.00 37.33 2.59
160 161 1.321074 CCCTCGGCTTAGTTCGGACT 61.321 60.000 0.00 0.00 39.97 3.85
161 162 1.141234 CCCTCGGCTTAGTTCGGAC 59.859 63.158 0.00 0.00 0.00 4.79
162 163 0.396695 ATCCCTCGGCTTAGTTCGGA 60.397 55.000 0.00 0.00 0.00 4.55
163 164 0.032267 GATCCCTCGGCTTAGTTCGG 59.968 60.000 0.00 0.00 0.00 4.30
164 165 1.033574 AGATCCCTCGGCTTAGTTCG 58.966 55.000 0.00 0.00 0.00 3.95
165 166 2.168728 ACAAGATCCCTCGGCTTAGTTC 59.831 50.000 0.00 0.00 0.00 3.01
166 167 2.188817 ACAAGATCCCTCGGCTTAGTT 58.811 47.619 0.00 0.00 0.00 2.24
167 168 1.867363 ACAAGATCCCTCGGCTTAGT 58.133 50.000 0.00 0.00 0.00 2.24
168 169 4.310769 CAATACAAGATCCCTCGGCTTAG 58.689 47.826 0.00 0.00 0.00 2.18
169 170 3.494398 GCAATACAAGATCCCTCGGCTTA 60.494 47.826 0.00 0.00 0.00 3.09
170 171 2.746472 GCAATACAAGATCCCTCGGCTT 60.746 50.000 0.00 0.00 0.00 4.35
171 172 1.202698 GCAATACAAGATCCCTCGGCT 60.203 52.381 0.00 0.00 0.00 5.52
172 173 1.230324 GCAATACAAGATCCCTCGGC 58.770 55.000 0.00 0.00 0.00 5.54
173 174 1.140852 TGGCAATACAAGATCCCTCGG 59.859 52.381 0.00 0.00 0.00 4.63
174 175 2.620251 TGGCAATACAAGATCCCTCG 57.380 50.000 0.00 0.00 0.00 4.63
175 176 3.567164 CACATGGCAATACAAGATCCCTC 59.433 47.826 0.00 0.00 0.00 4.30
176 177 3.053395 ACACATGGCAATACAAGATCCCT 60.053 43.478 0.00 0.00 0.00 4.20
177 178 3.290710 ACACATGGCAATACAAGATCCC 58.709 45.455 0.00 0.00 0.00 3.85
178 179 4.989279 AACACATGGCAATACAAGATCC 57.011 40.909 0.00 0.00 0.00 3.36
179 180 5.577945 CCAAAACACATGGCAATACAAGATC 59.422 40.000 0.00 0.00 0.00 2.75
180 181 5.481105 CCAAAACACATGGCAATACAAGAT 58.519 37.500 0.00 0.00 0.00 2.40
181 182 4.262377 CCCAAAACACATGGCAATACAAGA 60.262 41.667 0.00 0.00 36.58 3.02
182 183 3.995705 CCCAAAACACATGGCAATACAAG 59.004 43.478 0.00 0.00 36.58 3.16
183 184 3.244353 CCCCAAAACACATGGCAATACAA 60.244 43.478 0.00 0.00 36.58 2.41
184 185 2.301296 CCCCAAAACACATGGCAATACA 59.699 45.455 0.00 0.00 36.58 2.29
185 186 2.934801 GCCCCAAAACACATGGCAATAC 60.935 50.000 0.00 0.00 41.76 1.89
186 187 1.277557 GCCCCAAAACACATGGCAATA 59.722 47.619 0.00 0.00 41.76 1.90
187 188 0.036590 GCCCCAAAACACATGGCAAT 59.963 50.000 0.00 0.00 41.76 3.56
188 189 1.053264 AGCCCCAAAACACATGGCAA 61.053 50.000 0.00 0.00 44.60 4.52
189 190 1.053264 AAGCCCCAAAACACATGGCA 61.053 50.000 0.00 0.00 44.60 4.92
190 191 0.972883 TAAGCCCCAAAACACATGGC 59.027 50.000 0.00 0.00 42.48 4.40
191 192 1.550072 CCTAAGCCCCAAAACACATGG 59.450 52.381 0.00 0.00 37.71 3.66
192 193 2.231235 GTCCTAAGCCCCAAAACACATG 59.769 50.000 0.00 0.00 0.00 3.21
193 194 2.158385 TGTCCTAAGCCCCAAAACACAT 60.158 45.455 0.00 0.00 0.00 3.21
194 195 1.215673 TGTCCTAAGCCCCAAAACACA 59.784 47.619 0.00 0.00 0.00 3.72
195 196 1.989706 TGTCCTAAGCCCCAAAACAC 58.010 50.000 0.00 0.00 0.00 3.32
196 197 2.378547 AGATGTCCTAAGCCCCAAAACA 59.621 45.455 0.00 0.00 0.00 2.83
197 198 3.017442 GAGATGTCCTAAGCCCCAAAAC 58.983 50.000 0.00 0.00 0.00 2.43
198 199 2.025321 GGAGATGTCCTAAGCCCCAAAA 60.025 50.000 0.54 0.00 40.17 2.44
199 200 1.564348 GGAGATGTCCTAAGCCCCAAA 59.436 52.381 0.54 0.00 40.17 3.28
200 201 1.213296 GGAGATGTCCTAAGCCCCAA 58.787 55.000 0.54 0.00 40.17 4.12
201 202 0.044092 TGGAGATGTCCTAAGCCCCA 59.956 55.000 10.72 0.00 44.30 4.96
202 203 1.134068 GTTGGAGATGTCCTAAGCCCC 60.134 57.143 10.72 0.00 44.30 5.80
203 204 1.473434 CGTTGGAGATGTCCTAAGCCC 60.473 57.143 10.72 0.00 44.30 5.19
204 205 1.941325 CGTTGGAGATGTCCTAAGCC 58.059 55.000 10.72 0.00 44.30 4.35
205 206 1.291132 GCGTTGGAGATGTCCTAAGC 58.709 55.000 14.07 14.07 43.30 3.09
212 213 1.215647 GAGTCGGCGTTGGAGATGT 59.784 57.895 6.85 0.00 0.00 3.06
229 230 5.241403 ACAAATACCATGTCCTTCTGTGA 57.759 39.130 0.00 0.00 0.00 3.58
254 257 4.003648 GACATCAGTCTGGACCGATTTTT 58.996 43.478 0.00 0.00 41.64 1.94
292 295 4.351111 GGTATAGGGTTGGATGGATGACTT 59.649 45.833 0.00 0.00 0.00 3.01
295 298 2.903784 CGGTATAGGGTTGGATGGATGA 59.096 50.000 0.00 0.00 0.00 2.92
370 374 2.380084 TGGCGGAAACTAGTAGCTTG 57.620 50.000 0.00 0.00 0.00 4.01
449 453 2.418197 CGGTCTTTTCTAGATTGGGCGA 60.418 50.000 0.00 0.00 34.79 5.54
454 458 6.049149 TGATTAGGCGGTCTTTTCTAGATTG 58.951 40.000 0.00 0.00 34.79 2.67
462 466 2.790433 TGCTTGATTAGGCGGTCTTTT 58.210 42.857 0.00 0.00 0.00 2.27
465 469 3.838244 TTATGCTTGATTAGGCGGTCT 57.162 42.857 0.00 0.00 0.00 3.85
500 504 1.606668 TGGGAGACGTTTGTGCATTTC 59.393 47.619 0.00 0.00 0.00 2.17
517 521 0.834612 TTGGCGGAAGGTAGTATGGG 59.165 55.000 0.00 0.00 0.00 4.00
520 524 6.161381 CGTTATATTTGGCGGAAGGTAGTAT 58.839 40.000 0.00 0.00 0.00 2.12
521 525 5.531634 CGTTATATTTGGCGGAAGGTAGTA 58.468 41.667 0.00 0.00 0.00 1.82
539 543 5.880054 AGACTTTGTGCTAATTGCGTTAT 57.120 34.783 0.00 0.00 46.63 1.89
586 590 0.879765 CGTCCCTACTCTGTGTTCGT 59.120 55.000 0.00 0.00 0.00 3.85
589 593 3.693807 TGTATCGTCCCTACTCTGTGTT 58.306 45.455 0.00 0.00 0.00 3.32
592 596 3.223435 CCATGTATCGTCCCTACTCTGT 58.777 50.000 0.00 0.00 0.00 3.41
601 605 2.038387 AAAGGCACCATGTATCGTCC 57.962 50.000 0.00 0.00 0.00 4.79
606 610 4.741321 CCAATCAAAAGGCACCATGTAT 57.259 40.909 0.00 0.00 0.00 2.29
636 640 0.882927 TTTTGCGGGAGTTCGGACAG 60.883 55.000 0.00 0.00 0.00 3.51
641 645 2.622962 GGGGTTTTGCGGGAGTTCG 61.623 63.158 0.00 0.00 0.00 3.95
643 647 1.228459 GAGGGGTTTTGCGGGAGTT 60.228 57.895 0.00 0.00 0.00 3.01
655 659 0.838608 TGTAACCAAACGTGAGGGGT 59.161 50.000 10.86 4.06 36.00 4.95
660 664 3.068560 GGCATACTGTAACCAAACGTGA 58.931 45.455 0.00 0.00 0.00 4.35
672 676 2.491693 CCACATTTTTCGGGCATACTGT 59.508 45.455 0.00 0.00 0.00 3.55
677 681 0.894835 GGACCACATTTTTCGGGCAT 59.105 50.000 0.00 0.00 0.00 4.40
681 685 0.519961 GTCCGGACCACATTTTTCGG 59.480 55.000 24.75 0.00 38.92 4.30
682 686 1.519408 AGTCCGGACCACATTTTTCG 58.481 50.000 30.82 0.00 0.00 3.46
689 693 0.111832 ACTGAGTAGTCCGGACCACA 59.888 55.000 30.61 22.51 28.79 4.17
701 705 3.208594 ACGCGGTCATGTATACTGAGTA 58.791 45.455 12.47 0.00 34.94 2.59
702 706 2.022195 ACGCGGTCATGTATACTGAGT 58.978 47.619 12.47 0.00 32.28 3.41
706 710 1.202486 CCCAACGCGGTCATGTATACT 60.202 52.381 12.47 0.00 0.00 2.12
707 711 1.214367 CCCAACGCGGTCATGTATAC 58.786 55.000 12.47 0.00 0.00 1.47
708 712 0.825410 ACCCAACGCGGTCATGTATA 59.175 50.000 12.47 0.00 0.00 1.47
714 724 2.871216 TTTGTCACCCAACGCGGTCA 62.871 55.000 12.47 0.00 32.17 4.02
747 764 1.446618 GTAACCGTTCGGACCGCAT 60.447 57.895 18.28 0.00 0.00 4.73
748 765 2.049248 GTAACCGTTCGGACCGCA 60.049 61.111 18.28 0.00 0.00 5.69
749 766 3.174573 CGTAACCGTTCGGACCGC 61.175 66.667 18.28 0.00 0.00 5.68
752 769 0.179179 CCTCTCGTAACCGTTCGGAC 60.179 60.000 18.28 5.69 35.01 4.79
767 784 3.069318 GCGGACCCTCGAACCTCT 61.069 66.667 0.00 0.00 0.00 3.69
786 803 3.027419 GGCATAAGGGCATCTCCAC 57.973 57.895 0.00 0.00 42.77 4.02
811 828 8.522830 ACCATTGGAAAAACTCATGTTACATAG 58.477 33.333 10.37 0.00 34.96 2.23
842 859 2.017049 AGATTTCGTGTATGGCAAGGC 58.983 47.619 0.00 0.00 0.00 4.35
847 864 3.802685 GGTGTAGAGATTTCGTGTATGGC 59.197 47.826 0.00 0.00 0.00 4.40
856 881 5.451103 GGGTTAGGTACGGTGTAGAGATTTC 60.451 48.000 0.00 0.00 0.00 2.17
867 892 1.773653 TGGTTTTGGGTTAGGTACGGT 59.226 47.619 0.00 0.00 0.00 4.83
868 893 2.565046 TGGTTTTGGGTTAGGTACGG 57.435 50.000 0.00 0.00 0.00 4.02
869 894 3.437741 GTGATGGTTTTGGGTTAGGTACG 59.562 47.826 0.00 0.00 0.00 3.67
870 895 3.760151 GGTGATGGTTTTGGGTTAGGTAC 59.240 47.826 0.00 0.00 0.00 3.34
871 896 3.658705 AGGTGATGGTTTTGGGTTAGGTA 59.341 43.478 0.00 0.00 0.00 3.08
884 911 2.555664 AGTGGATTCTGAGGTGATGGT 58.444 47.619 0.00 0.00 0.00 3.55
1248 1283 2.841044 ACAAGGACGTCCACCGGT 60.841 61.111 35.00 22.81 42.24 5.28
1293 1328 0.878523 TGAAGTTGGCCGTGAAGACG 60.879 55.000 0.00 0.00 45.67 4.18
1312 1347 1.224592 CGCCCTTGGGATAGTTGCT 59.775 57.895 10.36 0.00 0.00 3.91
1710 1745 2.683362 GCCAATGTTTAGGTAGGTCTGC 59.317 50.000 0.00 0.00 0.00 4.26
1822 1863 2.279650 CCCGTCGACGTTGGTGTT 60.280 61.111 33.49 0.00 37.74 3.32
1879 1929 1.275573 GTCCTTGCCTACCTCGTCTTT 59.724 52.381 0.00 0.00 0.00 2.52
2079 2129 2.443952 AGATCGATGGCGGTGGGA 60.444 61.111 0.54 0.00 38.28 4.37
2437 2487 4.778143 GACCCTGAACCGCGGCAT 62.778 66.667 28.58 15.69 0.00 4.40
2477 2527 1.160329 GGACATCTTGGGAATCGCCG 61.160 60.000 0.00 0.00 37.63 6.46
2479 2529 1.876156 GATGGACATCTTGGGAATCGC 59.124 52.381 5.09 0.00 35.04 4.58
2578 2628 0.670546 GCATCGGCAGGCATACGTAT 60.671 55.000 1.14 1.14 40.72 3.06
2618 2670 2.549064 TGTTCAGGCGCTATATGCAT 57.451 45.000 7.64 3.79 43.06 3.96
2743 2796 5.220970 CCTCACACGTTTACAGGAAACAAAT 60.221 40.000 9.03 0.00 46.72 2.32
2747 2800 3.246936 GTCCTCACACGTTTACAGGAAAC 59.753 47.826 0.00 0.00 43.51 2.78
2763 2816 0.321564 CAATCGTGGCCAAGTCCTCA 60.322 55.000 18.61 0.00 0.00 3.86
2788 2841 5.794894 AGTGTTACTTCTGTTCCATTCGAT 58.205 37.500 0.00 0.00 0.00 3.59
2808 2861 3.454375 AGTAACAACCACGTCAGAAGTG 58.546 45.455 9.38 9.38 39.19 3.16
2809 2862 3.714391 GAGTAACAACCACGTCAGAAGT 58.286 45.455 0.00 0.00 0.00 3.01
2810 2863 2.724690 CGAGTAACAACCACGTCAGAAG 59.275 50.000 0.00 0.00 0.00 2.85
2811 2864 2.358582 TCGAGTAACAACCACGTCAGAA 59.641 45.455 0.00 0.00 0.00 3.02
2814 2867 3.243468 TGAATCGAGTAACAACCACGTCA 60.243 43.478 0.00 0.00 0.00 4.35
2815 2868 3.311106 TGAATCGAGTAACAACCACGTC 58.689 45.455 0.00 0.00 0.00 4.34
2816 2869 3.374220 TGAATCGAGTAACAACCACGT 57.626 42.857 0.00 0.00 0.00 4.49
2817 2870 4.921470 ATTGAATCGAGTAACAACCACG 57.079 40.909 0.00 0.00 0.00 4.94
2831 2899 8.687824 TTTTCGGCATTCTCTTTTATTGAATC 57.312 30.769 0.00 0.00 0.00 2.52
2835 2903 5.863397 TGCTTTTCGGCATTCTCTTTTATTG 59.137 36.000 0.00 0.00 37.29 1.90
2862 2930 4.640805 TTTTTGTGACGCGTATCTCTTC 57.359 40.909 13.97 0.00 0.00 2.87
2867 2935 4.091509 AGACAGATTTTTGTGACGCGTATC 59.908 41.667 13.97 10.01 0.00 2.24
2874 2942 5.395486 GCGTACAAAGACAGATTTTTGTGAC 59.605 40.000 11.60 6.36 44.63 3.67
2877 2945 5.270853 GTGCGTACAAAGACAGATTTTTGT 58.729 37.500 0.00 7.61 46.14 2.83
2891 2959 0.032952 AAGAAGAGCGGTGCGTACAA 59.967 50.000 5.86 0.00 0.00 2.41
2898 2966 0.108424 CAGGAGGAAGAAGAGCGGTG 60.108 60.000 0.00 0.00 0.00 4.94
2899 2967 1.893919 GCAGGAGGAAGAAGAGCGGT 61.894 60.000 0.00 0.00 0.00 5.68
2931 3000 2.557372 GGAGCCCGAGACTCGATCC 61.557 68.421 26.11 22.77 43.74 3.36
2951 3020 4.424566 GCACCATGCACCGCCTTG 62.425 66.667 0.00 0.00 44.26 3.61
2966 3035 1.132721 ACCCTGCTCCTATATCTGGCA 60.133 52.381 0.00 0.00 0.00 4.92
2968 3037 1.821753 CGACCCTGCTCCTATATCTGG 59.178 57.143 0.00 0.00 0.00 3.86
2981 3050 2.679837 CAAAATCTCATGACCGACCCTG 59.320 50.000 0.00 0.00 0.00 4.45
2986 3055 1.368641 CGCCAAAATCTCATGACCGA 58.631 50.000 0.00 0.00 0.00 4.69
3010 3079 0.800631 CCGAGTTTTAGTTTCGCCCC 59.199 55.000 0.00 0.00 33.25 5.80
3057 3126 7.216494 TCATCATAAGTGACTTTGAGTTGACA 58.784 34.615 1.97 0.00 37.14 3.58
3082 3151 3.913163 GGAGAAGGGATCCAGGATAACAT 59.087 47.826 15.23 0.00 36.79 2.71
3086 3155 2.112691 GGAGGAGAAGGGATCCAGGATA 59.887 54.545 15.23 0.00 39.47 2.59
3116 3185 0.243095 GGCGTCTACGTTCACCTTCT 59.757 55.000 0.00 0.00 42.22 2.85
3144 3213 1.446907 CTGCCTTGCTGTCTACCTTG 58.553 55.000 0.00 0.00 0.00 3.61
3145 3214 0.322008 GCTGCCTTGCTGTCTACCTT 60.322 55.000 0.00 0.00 0.00 3.50
3147 3216 2.103042 CGCTGCCTTGCTGTCTACC 61.103 63.158 0.00 0.00 0.00 3.18
3148 3217 0.460987 ATCGCTGCCTTGCTGTCTAC 60.461 55.000 0.00 0.00 0.00 2.59
3162 3231 0.673333 TTGTGAATGACGCCATCGCT 60.673 50.000 0.00 0.00 39.84 4.93
3164 3233 0.374758 CCTTGTGAATGACGCCATCG 59.625 55.000 0.00 0.00 42.43 3.84
3167 3236 0.955428 GCTCCTTGTGAATGACGCCA 60.955 55.000 0.00 0.00 0.00 5.69
3168 3237 1.648467 GGCTCCTTGTGAATGACGCC 61.648 60.000 0.00 0.00 0.00 5.68
3174 3243 1.637553 ACCTCATGGCTCCTTGTGAAT 59.362 47.619 0.00 0.00 36.63 2.57
3217 3290 1.526887 GTCCCGGATGCAATGGAGA 59.473 57.895 0.73 0.00 0.00 3.71
3220 3293 1.526917 GAGGTCCCGGATGCAATGG 60.527 63.158 0.73 0.00 0.00 3.16
3223 3296 0.107214 GAATGAGGTCCCGGATGCAA 60.107 55.000 0.73 0.00 0.00 4.08
3252 3326 3.857093 GCAAATACGTCGCAATCCAAAAT 59.143 39.130 0.00 0.00 0.00 1.82
3261 3335 0.711670 GAACGAGCAAATACGTCGCA 59.288 50.000 0.00 0.00 41.87 5.10
3270 3344 6.946229 GTTCTCACTATAAGAACGAGCAAA 57.054 37.500 0.00 0.00 42.16 3.68
3303 3377 0.672342 ATGACACGGAGGCGGTATAC 59.328 55.000 0.00 0.00 0.00 1.47
3304 3378 0.956633 GATGACACGGAGGCGGTATA 59.043 55.000 0.00 0.00 0.00 1.47
3305 3379 1.040893 TGATGACACGGAGGCGGTAT 61.041 55.000 0.00 0.00 0.00 2.73
3306 3380 1.252215 TTGATGACACGGAGGCGGTA 61.252 55.000 0.00 0.00 0.00 4.02
3307 3381 1.899437 ATTGATGACACGGAGGCGGT 61.899 55.000 0.00 0.00 0.00 5.68
3308 3382 0.104120 TATTGATGACACGGAGGCGG 59.896 55.000 0.00 0.00 0.00 6.13
3309 3383 1.209128 GTATTGATGACACGGAGGCG 58.791 55.000 0.00 0.00 0.00 5.52
3360 3434 9.877222 TCTAATGTATTCAAGTAGACTATGGGA 57.123 33.333 0.00 0.00 0.00 4.37
3401 3475 6.989759 GGATTGGACCGCCATAATTTTATTTT 59.010 34.615 0.00 0.00 45.46 1.82
3402 3476 6.098982 TGGATTGGACCGCCATAATTTTATTT 59.901 34.615 0.00 0.00 45.46 1.40
3421 3495 6.930164 TCATCCTTGTTTGAATTGTTGGATTG 59.070 34.615 0.00 0.00 31.52 2.67
3428 3502 9.480053 CTGTTTTATCATCCTTGTTTGAATTGT 57.520 29.630 0.00 0.00 0.00 2.71
3444 3518 8.623903 GTGCATATTCATCCTTCTGTTTTATCA 58.376 33.333 0.00 0.00 0.00 2.15
3501 3575 7.175990 TGGGATTTTAGTGATCACTTGGTAAAC 59.824 37.037 32.14 18.11 42.54 2.01
3503 3577 6.785076 TGGGATTTTAGTGATCACTTGGTAA 58.215 36.000 32.14 18.00 42.54 2.85
3508 3582 5.880901 ACACTGGGATTTTAGTGATCACTT 58.119 37.500 32.14 15.45 45.46 3.16
3510 3584 5.619981 GCAACACTGGGATTTTAGTGATCAC 60.620 44.000 18.47 18.47 45.46 3.06
3518 3592 3.161866 GGGAAGCAACACTGGGATTTTA 58.838 45.455 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.