Multiple sequence alignment - TraesCS7D01G054400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G054400 chr7D 100.000 2699 0 0 1 2699 29058385 29055687 0.000000e+00 4985.0
1 TraesCS7D01G054400 chr7D 79.730 666 114 10 1014 1668 80772358 80771703 1.890000e-126 462.0
2 TraesCS7D01G054400 chr4A 90.267 750 67 1 1010 1753 701282928 701283677 0.000000e+00 976.0
3 TraesCS7D01G054400 chr4A 83.710 620 97 2 1023 1638 701293316 701293935 1.390000e-162 582.0
4 TraesCS7D01G054400 chr2A 93.445 656 40 1 2043 2695 768619158 768618503 0.000000e+00 970.0
5 TraesCS7D01G054400 chr2A 92.760 663 42 1 2043 2699 19884422 19885084 0.000000e+00 953.0
6 TraesCS7D01G054400 chr2A 76.125 289 60 8 1760 2047 18305892 18305612 2.800000e-30 143.0
7 TraesCS7D01G054400 chr4B 92.879 660 44 1 2043 2699 232225497 232224838 0.000000e+00 955.0
8 TraesCS7D01G054400 chr4B 71.827 646 171 9 1016 1657 582112826 582113464 9.930000e-40 174.0
9 TraesCS7D01G054400 chr7A 88.975 771 79 3 995 1759 29165589 29164819 0.000000e+00 948.0
10 TraesCS7D01G054400 chr7A 85.298 687 47 20 316 993 146215836 146215195 0.000000e+00 660.0
11 TraesCS7D01G054400 chr7A 84.578 616 91 4 1025 1638 29160900 29160287 2.300000e-170 608.0
12 TraesCS7D01G054400 chr7A 90.938 320 27 1 1 318 146216258 146215939 1.920000e-116 429.0
13 TraesCS7D01G054400 chr1B 92.716 659 42 1 2043 2695 16918202 16917544 0.000000e+00 946.0
14 TraesCS7D01G054400 chr1B 81.298 647 119 2 1016 1661 349547301 349546656 8.560000e-145 523.0
15 TraesCS7D01G054400 chr1B 78.431 255 42 8 1760 2011 433631822 433631578 1.290000e-33 154.0
16 TraesCS7D01G054400 chr6D 92.308 663 45 2 2043 2699 16700348 16699686 0.000000e+00 937.0
17 TraesCS7D01G054400 chr3A 92.413 659 46 2 2045 2699 739944102 739943444 0.000000e+00 937.0
18 TraesCS7D01G054400 chr3A 80.275 218 32 6 1760 1975 118568322 118568530 1.290000e-33 154.0
19 TraesCS7D01G054400 chr1D 92.308 663 45 1 2043 2699 312413935 312414597 0.000000e+00 937.0
20 TraesCS7D01G054400 chr1D 92.390 657 47 1 2046 2699 15515737 15515081 0.000000e+00 933.0
21 TraesCS7D01G054400 chr1D 80.799 651 121 4 1013 1661 262287834 262288482 8.620000e-140 507.0
22 TraesCS7D01G054400 chr3B 92.273 660 48 1 2043 2699 27467265 27466606 0.000000e+00 933.0
23 TraesCS7D01G054400 chr3B 90.625 320 28 1 1 318 66058111 66058430 8.930000e-115 424.0
24 TraesCS7D01G054400 chr3B 91.786 280 19 2 316 591 66058533 66058812 1.170000e-103 387.0
25 TraesCS7D01G054400 chr3B 86.667 360 29 8 635 994 66058807 66059147 5.450000e-102 381.0
26 TraesCS7D01G054400 chr5A 87.373 689 57 13 316 993 579626920 579627589 0.000000e+00 763.0
27 TraesCS7D01G054400 chr5A 92.188 320 23 1 1 318 579626500 579626819 4.100000e-123 451.0
28 TraesCS7D01G054400 chr5A 91.562 320 23 2 1 318 41971804 41972121 3.190000e-119 438.0
29 TraesCS7D01G054400 chr5A 93.985 133 8 0 859 991 41972752 41972884 4.560000e-48 202.0
30 TraesCS7D01G054400 chr5A 79.791 287 50 6 1760 2046 506150250 506149972 4.560000e-48 202.0
31 TraesCS7D01G054400 chr1A 80.864 648 120 4 1016 1661 337658530 337657885 8.620000e-140 507.0
32 TraesCS7D01G054400 chr7B 80.597 670 115 11 1014 1668 27974535 27973866 1.120000e-138 503.0
33 TraesCS7D01G054400 chr7B 76.336 262 50 10 1753 2012 718145084 718145335 2.180000e-26 130.0
34 TraesCS7D01G054400 chr4D 73.356 593 147 10 1016 1604 465357899 465358484 2.720000e-50 209.0
35 TraesCS7D01G054400 chr5B 78.425 292 52 10 1759 2047 16369082 16369365 2.130000e-41 180.0
36 TraesCS7D01G054400 chr5B 79.195 149 24 4 1760 1908 711999767 711999908 2.210000e-16 97.1
37 TraesCS7D01G054400 chrUn 79.681 251 40 7 1760 2008 20613472 20613231 1.280000e-38 171.0
38 TraesCS7D01G054400 chr6A 82.178 101 16 1 1759 1859 51762222 51762320 4.790000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G054400 chr7D 29055687 29058385 2698 True 4985.000000 4985 100.000000 1 2699 1 chr7D.!!$R1 2698
1 TraesCS7D01G054400 chr7D 80771703 80772358 655 True 462.000000 462 79.730000 1014 1668 1 chr7D.!!$R2 654
2 TraesCS7D01G054400 chr4A 701282928 701283677 749 False 976.000000 976 90.267000 1010 1753 1 chr4A.!!$F1 743
3 TraesCS7D01G054400 chr4A 701293316 701293935 619 False 582.000000 582 83.710000 1023 1638 1 chr4A.!!$F2 615
4 TraesCS7D01G054400 chr2A 768618503 768619158 655 True 970.000000 970 93.445000 2043 2695 1 chr2A.!!$R2 652
5 TraesCS7D01G054400 chr2A 19884422 19885084 662 False 953.000000 953 92.760000 2043 2699 1 chr2A.!!$F1 656
6 TraesCS7D01G054400 chr4B 232224838 232225497 659 True 955.000000 955 92.879000 2043 2699 1 chr4B.!!$R1 656
7 TraesCS7D01G054400 chr7A 29160287 29165589 5302 True 778.000000 948 86.776500 995 1759 2 chr7A.!!$R1 764
8 TraesCS7D01G054400 chr7A 146215195 146216258 1063 True 544.500000 660 88.118000 1 993 2 chr7A.!!$R2 992
9 TraesCS7D01G054400 chr1B 16917544 16918202 658 True 946.000000 946 92.716000 2043 2695 1 chr1B.!!$R1 652
10 TraesCS7D01G054400 chr1B 349546656 349547301 645 True 523.000000 523 81.298000 1016 1661 1 chr1B.!!$R2 645
11 TraesCS7D01G054400 chr6D 16699686 16700348 662 True 937.000000 937 92.308000 2043 2699 1 chr6D.!!$R1 656
12 TraesCS7D01G054400 chr3A 739943444 739944102 658 True 937.000000 937 92.413000 2045 2699 1 chr3A.!!$R1 654
13 TraesCS7D01G054400 chr1D 312413935 312414597 662 False 937.000000 937 92.308000 2043 2699 1 chr1D.!!$F2 656
14 TraesCS7D01G054400 chr1D 15515081 15515737 656 True 933.000000 933 92.390000 2046 2699 1 chr1D.!!$R1 653
15 TraesCS7D01G054400 chr1D 262287834 262288482 648 False 507.000000 507 80.799000 1013 1661 1 chr1D.!!$F1 648
16 TraesCS7D01G054400 chr3B 27466606 27467265 659 True 933.000000 933 92.273000 2043 2699 1 chr3B.!!$R1 656
17 TraesCS7D01G054400 chr3B 66058111 66059147 1036 False 397.333333 424 89.692667 1 994 3 chr3B.!!$F1 993
18 TraesCS7D01G054400 chr5A 579626500 579627589 1089 False 607.000000 763 89.780500 1 993 2 chr5A.!!$F2 992
19 TraesCS7D01G054400 chr5A 41971804 41972884 1080 False 320.000000 438 92.773500 1 991 2 chr5A.!!$F1 990
20 TraesCS7D01G054400 chr1A 337657885 337658530 645 True 507.000000 507 80.864000 1016 1661 1 chr1A.!!$R1 645
21 TraesCS7D01G054400 chr7B 27973866 27974535 669 True 503.000000 503 80.597000 1014 1668 1 chr7B.!!$R1 654
22 TraesCS7D01G054400 chr4D 465357899 465358484 585 False 209.000000 209 73.356000 1016 1604 1 chr4D.!!$F1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 148 0.109039 GGAGCCACTCGAAGTCTGAC 60.109 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 2088 0.103755 CAGCTCTGCCGAGATGCTTA 59.896 55.0 10.5 0.0 45.47 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 84 6.416415 TGTTTCCTCTTACCTTTGTGTTGTA 58.584 36.000 0.00 0.00 0.00 2.41
86 89 5.351233 TCTTACCTTTGTGTTGTATTGCG 57.649 39.130 0.00 0.00 0.00 4.85
136 139 0.321564 TTTGACCATGGAGCCACTCG 60.322 55.000 21.47 0.00 0.00 4.18
145 148 0.109039 GGAGCCACTCGAAGTCTGAC 60.109 60.000 0.00 0.00 0.00 3.51
174 177 7.439157 TCTCATGATTCTTGAATTTGACGTT 57.561 32.000 0.00 0.00 0.00 3.99
191 194 8.487313 TTTGACGTTCTATTATGCACACTAAT 57.513 30.769 0.00 0.00 0.00 1.73
208 211 8.673711 GCACACTAATATTATTGGTCTGTTTCA 58.326 33.333 15.05 0.00 0.00 2.69
310 313 8.925161 TTGTTTTCAAGAAGATTACAAACCTG 57.075 30.769 0.00 0.00 34.60 4.00
348 456 4.878971 TCAAAACATTTGAGGACTCGACAA 59.121 37.500 1.57 0.00 0.00 3.18
353 461 4.989168 ACATTTGAGGACTCGACAACTAAC 59.011 41.667 0.00 0.00 0.00 2.34
381 490 4.971220 CACGTTGCGGTGTTTTAAATTAGT 59.029 37.500 0.00 0.00 33.24 2.24
408 517 1.186917 TTGCAAGCCCAACCATCCAG 61.187 55.000 0.00 0.00 0.00 3.86
446 559 3.374764 AGCCCTAATGGTTTTTGATCCC 58.625 45.455 0.00 0.00 36.04 3.85
447 560 2.434336 GCCCTAATGGTTTTTGATCCCC 59.566 50.000 0.00 0.00 36.04 4.81
485 601 7.603651 TGAGTTGAGTCCTAAGAAATCTGTAC 58.396 38.462 0.00 0.00 0.00 2.90
489 605 7.081526 TGAGTCCTAAGAAATCTGTACGTAC 57.918 40.000 18.90 18.90 0.00 3.67
500 616 6.579666 AATCTGTACGTACACTCAGGTTTA 57.420 37.500 24.10 0.00 28.52 2.01
513 629 5.817816 CACTCAGGTTTAGTTGTGTCTTTCT 59.182 40.000 0.00 0.00 0.00 2.52
528 644 8.450578 TGTGTCTTTCTGAAATGTATGTTCTT 57.549 30.769 2.88 0.00 0.00 2.52
552 668 9.941664 CTTCAAAGGTACAATATCTGCAAATAG 57.058 33.333 0.00 0.00 0.00 1.73
557 673 6.708054 AGGTACAATATCTGCAAATAGTCAGC 59.292 38.462 0.00 0.00 0.00 4.26
560 676 6.351711 ACAATATCTGCAAATAGTCAGCTCA 58.648 36.000 0.00 0.00 0.00 4.26
619 740 6.588719 TTTGTGTTGCTATTTCCAAGCTAT 57.411 33.333 0.00 0.00 40.73 2.97
671 792 9.624697 TTCTTTTTAGGTCATTTGATTCAATCG 57.375 29.630 0.00 0.00 0.00 3.34
674 795 3.355378 AGGTCATTTGATTCAATCGGCA 58.645 40.909 0.00 0.00 0.00 5.69
721 892 5.407995 GGCATCTATGTAAAGTCATGAGCTC 59.592 44.000 6.82 6.82 0.00 4.09
722 893 5.987953 GCATCTATGTAAAGTCATGAGCTCA 59.012 40.000 20.79 20.79 0.00 4.26
723 894 6.649973 GCATCTATGTAAAGTCATGAGCTCAT 59.350 38.462 23.75 23.75 36.96 2.90
724 895 7.172875 GCATCTATGTAAAGTCATGAGCTCATT 59.827 37.037 26.70 15.05 33.61 2.57
725 896 8.496751 CATCTATGTAAAGTCATGAGCTCATTG 58.503 37.037 26.70 20.24 33.61 2.82
726 897 4.952262 TGTAAAGTCATGAGCTCATTGC 57.048 40.909 26.70 20.34 43.29 3.56
742 913 6.567050 GCTCATTGCTGGAATATTTTCTTCA 58.433 36.000 0.00 0.00 38.95 3.02
743 914 7.037438 GCTCATTGCTGGAATATTTTCTTCAA 58.963 34.615 0.00 0.00 38.95 2.69
744 915 7.009907 GCTCATTGCTGGAATATTTTCTTCAAC 59.990 37.037 0.00 0.00 38.95 3.18
745 916 8.125978 TCATTGCTGGAATATTTTCTTCAACT 57.874 30.769 0.00 0.00 32.16 3.16
789 960 2.074547 AAGCTGCATGAATGTTGCAC 57.925 45.000 1.02 0.00 44.73 4.57
799 970 4.044336 TGAATGTTGCACTGTTGAAAGG 57.956 40.909 0.00 0.00 0.00 3.11
832 1003 6.479436 TGTTATGATGTAAAAACGGTATGCG 58.521 36.000 0.00 0.00 0.00 4.73
839 1010 6.724694 TGTAAAAACGGTATGCGTCTTATT 57.275 33.333 0.00 0.00 0.00 1.40
840 1011 7.131498 TGTAAAAACGGTATGCGTCTTATTT 57.869 32.000 0.00 0.00 0.00 1.40
841 1012 7.235777 TGTAAAAACGGTATGCGTCTTATTTC 58.764 34.615 0.00 0.00 0.00 2.17
842 1013 6.490566 AAAAACGGTATGCGTCTTATTTCT 57.509 33.333 0.00 0.00 0.00 2.52
843 1014 5.464965 AAACGGTATGCGTCTTATTTCTG 57.535 39.130 0.00 0.00 0.00 3.02
844 1015 2.864343 ACGGTATGCGTCTTATTTCTGC 59.136 45.455 0.00 0.00 0.00 4.26
845 1016 2.863740 CGGTATGCGTCTTATTTCTGCA 59.136 45.455 0.00 0.00 40.23 4.41
846 1017 3.308595 CGGTATGCGTCTTATTTCTGCAA 59.691 43.478 0.00 0.00 39.26 4.08
847 1018 4.024893 CGGTATGCGTCTTATTTCTGCAAT 60.025 41.667 0.00 0.00 39.26 3.56
848 1019 5.444122 GGTATGCGTCTTATTTCTGCAATC 58.556 41.667 0.00 0.00 39.26 2.67
849 1020 5.237344 GGTATGCGTCTTATTTCTGCAATCT 59.763 40.000 0.00 0.00 39.26 2.40
850 1021 5.824904 ATGCGTCTTATTTCTGCAATCTT 57.175 34.783 0.00 0.00 39.26 2.40
851 1022 5.627499 TGCGTCTTATTTCTGCAATCTTT 57.373 34.783 0.00 0.00 31.69 2.52
852 1023 6.012658 TGCGTCTTATTTCTGCAATCTTTT 57.987 33.333 0.00 0.00 31.69 2.27
853 1024 5.858049 TGCGTCTTATTTCTGCAATCTTTTG 59.142 36.000 0.00 0.00 35.85 2.44
854 1025 5.858581 GCGTCTTATTTCTGCAATCTTTTGT 59.141 36.000 0.00 0.00 35.17 2.83
855 1026 6.363357 GCGTCTTATTTCTGCAATCTTTTGTT 59.637 34.615 0.00 0.00 35.17 2.83
856 1027 7.409767 GCGTCTTATTTCTGCAATCTTTTGTTC 60.410 37.037 0.00 0.00 35.17 3.18
857 1028 7.061094 CGTCTTATTTCTGCAATCTTTTGTTCC 59.939 37.037 0.00 0.00 35.17 3.62
914 1085 4.883585 CCTTTCTAATTGCATGCCTCTACA 59.116 41.667 16.68 0.00 0.00 2.74
998 1169 1.617357 GGGTTGTCGACTAGTTCCTGT 59.383 52.381 17.92 0.00 0.00 4.00
1007 1178 3.119101 CGACTAGTTCCTGTAATGGCTGT 60.119 47.826 0.00 0.00 0.00 4.40
1013 1184 0.394352 CCTGTAATGGCTGTGGGGAC 60.394 60.000 0.00 0.00 0.00 4.46
1021 1192 3.775654 CTGTGGGGACGGGAGAGC 61.776 72.222 0.00 0.00 0.00 4.09
1139 1310 1.621301 CTCACCAACAAGAGCGAGCG 61.621 60.000 0.00 0.00 0.00 5.03
1188 1359 2.124570 GTGCCCGTGCTCATCCAT 60.125 61.111 0.00 0.00 38.71 3.41
1194 1365 2.124570 GTGCTCATCCATGGCGGT 60.125 61.111 6.96 0.00 35.57 5.68
1200 1371 0.621082 TCATCCATGGCGGTAAACCA 59.379 50.000 6.96 0.00 42.61 3.67
1218 1389 0.824109 CAATCTGCGAGTCCCAGGTA 59.176 55.000 4.98 0.00 0.00 3.08
1227 1398 1.829222 GAGTCCCAGGTAATCGTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
1266 1443 1.686110 CTCTGTAGGCCCGACCCTT 60.686 63.158 0.00 0.00 40.58 3.95
1332 1509 0.179205 CCTACGTCGACGACAAGGTC 60.179 60.000 41.52 0.00 43.02 3.85
1333 1510 0.795085 CTACGTCGACGACAAGGTCT 59.205 55.000 41.52 20.54 43.02 3.85
1362 1548 1.454663 GGGAATGCTCTTGAGGGCC 60.455 63.158 0.00 0.00 0.00 5.80
1383 1575 4.361971 ACGGACGAGGAGAGGGCA 62.362 66.667 0.00 0.00 0.00 5.36
1402 1594 2.997897 AGTGGACGAGGCAGACCC 60.998 66.667 0.00 0.00 36.11 4.46
1413 1605 4.379243 CAGACCCTCGCAGCGGTT 62.379 66.667 16.42 0.00 30.56 4.44
1418 1610 2.434884 CCTCGCAGCGGTTGATGT 60.435 61.111 16.42 0.00 32.92 3.06
1422 1614 2.100031 CGCAGCGGTTGATGTGCTA 61.100 57.895 7.00 0.00 37.15 3.49
1425 1617 1.725641 CAGCGGTTGATGTGCTAGAA 58.274 50.000 0.00 0.00 37.15 2.10
1446 1638 3.695606 GGCGTGAGGGAGTGCTCA 61.696 66.667 1.41 0.00 0.00 4.26
1450 1648 1.294659 CGTGAGGGAGTGCTCAAAGC 61.295 60.000 1.41 0.00 42.82 3.51
1531 1739 2.263227 CATGGGTGTACGCGACCA 59.737 61.111 15.93 13.27 34.89 4.02
1539 1747 2.159338 GGTGTACGCGACCAAGAAGATA 60.159 50.000 15.93 0.00 33.25 1.98
1557 1765 4.759782 AGATATCCGGTCACAACTTCTTG 58.240 43.478 0.00 0.00 0.00 3.02
1661 1869 2.511659 TGACAGCTTGGTAGAGTACGT 58.488 47.619 0.00 0.00 0.00 3.57
1738 1946 4.270153 ACCTGCTCCCCTGGTGGA 62.270 66.667 4.20 4.20 43.36 4.02
1748 1956 2.777692 TCCCCTGGTGGATGTCTATTTC 59.222 50.000 0.33 0.00 35.39 2.17
1753 1961 4.141413 CCTGGTGGATGTCTATTTCCATGA 60.141 45.833 0.00 0.00 43.61 3.07
1755 1963 4.474651 TGGTGGATGTCTATTTCCATGACT 59.525 41.667 0.00 0.00 43.61 3.41
1759 1967 7.389053 GGTGGATGTCTATTTCCATGACTATTC 59.611 40.741 0.00 0.00 43.61 1.75
1760 1968 7.933577 GTGGATGTCTATTTCCATGACTATTCA 59.066 37.037 0.00 0.00 43.61 2.57
1762 1970 8.153550 GGATGTCTATTTCCATGACTATTCACT 58.846 37.037 0.00 0.00 33.38 3.41
1764 1972 9.988815 ATGTCTATTTCCATGACTATTCACTAC 57.011 33.333 0.00 0.00 33.38 2.73
1765 1973 9.201989 TGTCTATTTCCATGACTATTCACTACT 57.798 33.333 0.00 0.00 33.38 2.57
1772 1980 9.647918 TTCCATGACTATTCACTACTAGAATCT 57.352 33.333 0.00 0.00 37.02 2.40
1773 1981 9.072375 TCCATGACTATTCACTACTAGAATCTG 57.928 37.037 0.00 0.00 37.02 2.90
1774 1982 8.303156 CCATGACTATTCACTACTAGAATCTGG 58.697 40.741 0.00 0.00 37.02 3.86
1775 1983 8.855110 CATGACTATTCACTACTAGAATCTGGT 58.145 37.037 4.36 4.36 37.02 4.00
1776 1984 8.824756 TGACTATTCACTACTAGAATCTGGTT 57.175 34.615 4.22 0.00 37.02 3.67
1777 1985 9.256228 TGACTATTCACTACTAGAATCTGGTTT 57.744 33.333 4.22 0.00 37.02 3.27
1779 1987 9.877178 ACTATTCACTACTAGAATCTGGTTTTG 57.123 33.333 4.22 3.05 37.02 2.44
1780 1988 9.877178 CTATTCACTACTAGAATCTGGTTTTGT 57.123 33.333 4.22 0.00 37.02 2.83
1781 1989 8.779354 ATTCACTACTAGAATCTGGTTTTGTC 57.221 34.615 4.22 0.00 30.16 3.18
1782 1990 6.698380 TCACTACTAGAATCTGGTTTTGTCC 58.302 40.000 4.22 0.00 0.00 4.02
1783 1991 5.875359 CACTACTAGAATCTGGTTTTGTCCC 59.125 44.000 4.22 0.00 0.00 4.46
1784 1992 3.939066 ACTAGAATCTGGTTTTGTCCCG 58.061 45.455 0.00 0.00 0.00 5.14
1786 1994 3.059352 AGAATCTGGTTTTGTCCCGAG 57.941 47.619 0.00 0.00 0.00 4.63
1792 2000 1.489649 TGGTTTTGTCCCGAGTACCAA 59.510 47.619 0.00 0.00 33.05 3.67
1793 2001 2.148768 GGTTTTGTCCCGAGTACCAAG 58.851 52.381 0.00 0.00 0.00 3.61
1794 2002 2.224354 GGTTTTGTCCCGAGTACCAAGA 60.224 50.000 0.00 0.00 0.00 3.02
1795 2003 2.804527 GTTTTGTCCCGAGTACCAAGAC 59.195 50.000 0.00 0.00 0.00 3.01
1798 2006 1.822990 TGTCCCGAGTACCAAGACATC 59.177 52.381 2.50 0.00 32.75 3.06
1801 2009 1.134788 CCCGAGTACCAAGACATCACC 60.135 57.143 0.00 0.00 0.00 4.02
1802 2010 1.469251 CCGAGTACCAAGACATCACCG 60.469 57.143 0.00 0.00 0.00 4.94
1806 2014 2.897969 AGTACCAAGACATCACCGAGTT 59.102 45.455 0.00 0.00 0.00 3.01
1808 2016 3.208747 ACCAAGACATCACCGAGTTTT 57.791 42.857 0.00 0.00 0.00 2.43
1830 2038 0.321346 TTCTGTCATGAGCTCGGCAA 59.679 50.000 9.64 0.00 0.00 4.52
1831 2039 0.321346 TCTGTCATGAGCTCGGCAAA 59.679 50.000 9.64 0.00 0.00 3.68
1832 2040 0.445436 CTGTCATGAGCTCGGCAAAC 59.555 55.000 9.64 3.60 0.00 2.93
1834 2042 1.160137 GTCATGAGCTCGGCAAACTT 58.840 50.000 9.64 0.00 0.00 2.66
1835 2043 1.129437 GTCATGAGCTCGGCAAACTTC 59.871 52.381 9.64 0.00 0.00 3.01
1836 2044 1.002430 TCATGAGCTCGGCAAACTTCT 59.998 47.619 9.64 0.00 0.00 2.85
1838 2046 0.681733 TGAGCTCGGCAAACTTCTCT 59.318 50.000 9.64 0.00 0.00 3.10
1839 2047 1.893137 TGAGCTCGGCAAACTTCTCTA 59.107 47.619 9.64 0.00 0.00 2.43
1840 2048 2.497675 TGAGCTCGGCAAACTTCTCTAT 59.502 45.455 9.64 0.00 0.00 1.98
1841 2049 2.863137 GAGCTCGGCAAACTTCTCTATG 59.137 50.000 0.00 0.00 0.00 2.23
1842 2050 1.328986 GCTCGGCAAACTTCTCTATGC 59.671 52.381 0.00 0.00 38.06 3.14
1847 2055 2.622436 GCAAACTTCTCTATGCCGAGT 58.378 47.619 0.00 0.00 32.73 4.18
1850 2058 2.853731 ACTTCTCTATGCCGAGTTCG 57.146 50.000 0.00 0.00 39.44 3.95
1851 2059 2.366533 ACTTCTCTATGCCGAGTTCGA 58.633 47.619 2.59 0.00 43.02 3.71
1853 2061 3.003897 ACTTCTCTATGCCGAGTTCGATC 59.996 47.826 2.59 0.00 43.02 3.69
1854 2062 1.880675 TCTCTATGCCGAGTTCGATCC 59.119 52.381 2.59 0.00 43.02 3.36
1855 2063 1.609072 CTCTATGCCGAGTTCGATCCA 59.391 52.381 2.59 0.00 43.02 3.41
1856 2064 2.028876 TCTATGCCGAGTTCGATCCAA 58.971 47.619 2.59 0.00 43.02 3.53
1858 2066 2.107950 ATGCCGAGTTCGATCCAAAA 57.892 45.000 2.59 0.00 43.02 2.44
1859 2067 2.107950 TGCCGAGTTCGATCCAAAAT 57.892 45.000 2.59 0.00 43.02 1.82
1860 2068 2.432444 TGCCGAGTTCGATCCAAAATT 58.568 42.857 2.59 0.00 43.02 1.82
1861 2069 2.161410 TGCCGAGTTCGATCCAAAATTG 59.839 45.455 2.59 0.00 43.02 2.32
1862 2070 2.161609 GCCGAGTTCGATCCAAAATTGT 59.838 45.455 2.59 0.00 43.02 2.71
1863 2071 3.372822 GCCGAGTTCGATCCAAAATTGTA 59.627 43.478 2.59 0.00 43.02 2.41
1865 2073 4.630069 CCGAGTTCGATCCAAAATTGTACT 59.370 41.667 2.59 0.00 43.02 2.73
1866 2074 5.445939 CCGAGTTCGATCCAAAATTGTACTG 60.446 44.000 2.59 0.00 43.02 2.74
1869 2077 7.462856 CGAGTTCGATCCAAAATTGTACTGTAG 60.463 40.741 0.00 0.00 43.02 2.74
1870 2078 7.159372 AGTTCGATCCAAAATTGTACTGTAGT 58.841 34.615 0.00 0.00 0.00 2.73
1871 2079 7.331193 AGTTCGATCCAAAATTGTACTGTAGTC 59.669 37.037 0.00 0.00 0.00 2.59
1873 2081 5.803461 CGATCCAAAATTGTACTGTAGTCGA 59.197 40.000 0.00 0.00 0.00 4.20
1874 2082 6.237490 CGATCCAAAATTGTACTGTAGTCGAC 60.237 42.308 7.70 7.70 0.00 4.20
1875 2083 4.919168 TCCAAAATTGTACTGTAGTCGACG 59.081 41.667 10.46 0.00 0.00 5.12
1884 2092 2.097142 ACTGTAGTCGACGGTGATAAGC 59.903 50.000 10.46 0.00 46.44 3.09
1885 2093 2.086094 TGTAGTCGACGGTGATAAGCA 58.914 47.619 10.46 0.00 0.00 3.91
1888 2096 2.025155 AGTCGACGGTGATAAGCATCT 58.975 47.619 10.46 0.00 31.93 2.90
1890 2098 1.002792 TCGACGGTGATAAGCATCTCG 60.003 52.381 0.00 0.00 35.87 4.04
1892 2100 0.249489 ACGGTGATAAGCATCTCGGC 60.249 55.000 0.00 0.00 34.87 5.54
1893 2101 0.249447 CGGTGATAAGCATCTCGGCA 60.249 55.000 0.00 0.00 35.83 5.69
1897 2105 1.269988 TGATAAGCATCTCGGCAGAGC 60.270 52.381 9.22 0.00 44.02 4.09
1898 2106 1.000731 GATAAGCATCTCGGCAGAGCT 59.999 52.381 9.22 0.82 44.02 4.09
1900 2108 1.897225 AAGCATCTCGGCAGAGCTGT 61.897 55.000 17.08 3.93 44.02 4.40
1902 2110 2.172372 CATCTCGGCAGAGCTGTGC 61.172 63.158 26.78 26.78 44.02 4.57
1908 2116 2.257676 GCAGAGCTGTGCCTTTGC 59.742 61.111 24.66 0.00 37.49 3.68
1909 2117 2.960170 CAGAGCTGTGCCTTTGCC 59.040 61.111 0.00 0.00 36.33 4.52
1910 2118 1.900016 CAGAGCTGTGCCTTTGCCA 60.900 57.895 0.00 0.00 36.33 4.92
1914 2122 3.451665 CTGTGCCTTTGCCAGCTT 58.548 55.556 0.00 0.00 36.33 3.74
1915 2123 1.288127 CTGTGCCTTTGCCAGCTTC 59.712 57.895 0.00 0.00 36.33 3.86
1917 2125 1.288127 GTGCCTTTGCCAGCTTCTG 59.712 57.895 0.00 0.00 36.33 3.02
1918 2126 1.151221 TGCCTTTGCCAGCTTCTGA 59.849 52.632 0.00 0.00 36.33 3.27
1919 2127 0.251474 TGCCTTTGCCAGCTTCTGAT 60.251 50.000 0.00 0.00 36.33 2.90
1920 2128 0.893447 GCCTTTGCCAGCTTCTGATT 59.107 50.000 0.00 0.00 32.44 2.57
1923 2131 3.056607 GCCTTTGCCAGCTTCTGATTAAA 60.057 43.478 0.00 0.00 32.44 1.52
1924 2132 4.561326 GCCTTTGCCAGCTTCTGATTAAAA 60.561 41.667 0.00 0.00 32.44 1.52
1925 2133 4.925646 CCTTTGCCAGCTTCTGATTAAAAC 59.074 41.667 0.00 0.00 32.44 2.43
1926 2134 5.279156 CCTTTGCCAGCTTCTGATTAAAACT 60.279 40.000 0.00 0.00 32.44 2.66
1927 2135 4.771590 TGCCAGCTTCTGATTAAAACTG 57.228 40.909 0.00 0.00 32.44 3.16
1928 2136 4.397420 TGCCAGCTTCTGATTAAAACTGA 58.603 39.130 0.00 0.00 32.44 3.41
1929 2137 4.456911 TGCCAGCTTCTGATTAAAACTGAG 59.543 41.667 0.00 0.00 32.44 3.35
1930 2138 4.457257 GCCAGCTTCTGATTAAAACTGAGT 59.543 41.667 0.00 0.00 32.44 3.41
1931 2139 5.391416 GCCAGCTTCTGATTAAAACTGAGTC 60.391 44.000 0.00 0.00 32.44 3.36
1932 2140 5.163913 CCAGCTTCTGATTAAAACTGAGTCG 60.164 44.000 0.00 0.00 32.44 4.18
1933 2141 4.932200 AGCTTCTGATTAAAACTGAGTCGG 59.068 41.667 0.00 0.00 0.00 4.79
1934 2142 4.436183 GCTTCTGATTAAAACTGAGTCGGC 60.436 45.833 0.00 0.00 0.00 5.54
1935 2143 3.250744 TCTGATTAAAACTGAGTCGGCG 58.749 45.455 0.00 0.00 0.00 6.46
1936 2144 3.057104 TCTGATTAAAACTGAGTCGGCGA 60.057 43.478 4.99 4.99 0.00 5.54
1937 2145 3.655486 TGATTAAAACTGAGTCGGCGAA 58.345 40.909 12.92 0.00 0.00 4.70
1938 2146 3.430895 TGATTAAAACTGAGTCGGCGAAC 59.569 43.478 12.92 9.93 0.00 3.95
1940 2148 1.658994 AAAACTGAGTCGGCGAACAA 58.341 45.000 12.92 0.00 0.00 2.83
1941 2149 1.658994 AAACTGAGTCGGCGAACAAA 58.341 45.000 12.92 0.00 0.00 2.83
1966 2174 2.350522 ACTCGGCAGAATCACATGTTC 58.649 47.619 0.00 0.00 0.00 3.18
1967 2175 1.325640 CTCGGCAGAATCACATGTTCG 59.674 52.381 0.00 0.00 0.00 3.95
1968 2176 0.247814 CGGCAGAATCACATGTTCGC 60.248 55.000 0.00 0.24 0.00 4.70
1969 2177 0.099436 GGCAGAATCACATGTTCGCC 59.901 55.000 12.71 12.71 37.75 5.54
1971 2179 1.358877 CAGAATCACATGTTCGCCGA 58.641 50.000 0.00 0.00 0.00 5.54
1972 2180 1.325640 CAGAATCACATGTTCGCCGAG 59.674 52.381 0.00 0.00 0.00 4.63
1974 2182 1.732259 GAATCACATGTTCGCCGAGTT 59.268 47.619 0.00 0.00 0.00 3.01
1976 2184 0.669318 TCACATGTTCGCCGAGTTCC 60.669 55.000 0.00 0.00 0.00 3.62
1979 2187 2.642254 ATGTTCGCCGAGTTCCCGA 61.642 57.895 0.00 0.00 0.00 5.14
1980 2188 2.808321 GTTCGCCGAGTTCCCGAC 60.808 66.667 0.00 0.00 0.00 4.79
1981 2189 3.296836 TTCGCCGAGTTCCCGACA 61.297 61.111 0.00 0.00 0.00 4.35
1982 2190 3.277211 TTCGCCGAGTTCCCGACAG 62.277 63.158 0.00 0.00 0.00 3.51
1983 2191 3.744719 CGCCGAGTTCCCGACAGA 61.745 66.667 0.00 0.00 0.00 3.41
1984 2192 2.654877 GCCGAGTTCCCGACAGAA 59.345 61.111 0.00 0.00 0.00 3.02
1985 2193 1.446272 GCCGAGTTCCCGACAGAAG 60.446 63.158 0.00 0.00 0.00 2.85
1988 2196 1.000506 CCGAGTTCCCGACAGAAGAAA 59.999 52.381 0.00 0.00 0.00 2.52
1989 2197 2.059541 CGAGTTCCCGACAGAAGAAAC 58.940 52.381 0.00 0.00 0.00 2.78
1990 2198 2.288273 CGAGTTCCCGACAGAAGAAACT 60.288 50.000 0.00 0.00 0.00 2.66
1991 2199 3.318886 GAGTTCCCGACAGAAGAAACTC 58.681 50.000 0.00 0.00 0.00 3.01
1992 2200 2.059541 GTTCCCGACAGAAGAAACTCG 58.940 52.381 0.00 0.00 0.00 4.18
1993 2201 0.601558 TCCCGACAGAAGAAACTCGG 59.398 55.000 0.00 0.00 40.07 4.63
1994 2202 1.014564 CCCGACAGAAGAAACTCGGC 61.015 60.000 0.00 0.00 39.17 5.54
1995 2203 0.319555 CCGACAGAAGAAACTCGGCA 60.320 55.000 0.00 0.00 33.97 5.69
1997 2205 1.864711 CGACAGAAGAAACTCGGCAAA 59.135 47.619 0.00 0.00 0.00 3.68
2000 2208 4.434330 CGACAGAAGAAACTCGGCAAATAC 60.434 45.833 0.00 0.00 0.00 1.89
2001 2209 4.385825 ACAGAAGAAACTCGGCAAATACA 58.614 39.130 0.00 0.00 0.00 2.29
2002 2210 4.452455 ACAGAAGAAACTCGGCAAATACAG 59.548 41.667 0.00 0.00 0.00 2.74
2003 2211 4.690748 CAGAAGAAACTCGGCAAATACAGA 59.309 41.667 0.00 0.00 0.00 3.41
2004 2212 4.691216 AGAAGAAACTCGGCAAATACAGAC 59.309 41.667 0.00 0.00 0.00 3.51
2005 2213 4.002906 AGAAACTCGGCAAATACAGACA 57.997 40.909 0.00 0.00 0.00 3.41
2006 2214 4.579869 AGAAACTCGGCAAATACAGACAT 58.420 39.130 0.00 0.00 0.00 3.06
2007 2215 4.393062 AGAAACTCGGCAAATACAGACATG 59.607 41.667 0.00 0.00 0.00 3.21
2008 2216 3.334583 ACTCGGCAAATACAGACATGT 57.665 42.857 0.00 0.00 43.76 3.21
2009 2217 3.002791 ACTCGGCAAATACAGACATGTG 58.997 45.455 1.15 0.00 40.79 3.21
2010 2218 2.352651 CTCGGCAAATACAGACATGTGG 59.647 50.000 1.15 0.00 40.79 4.17
2011 2219 1.401552 CGGCAAATACAGACATGTGGG 59.598 52.381 1.15 0.00 40.79 4.61
2012 2220 1.750778 GGCAAATACAGACATGTGGGG 59.249 52.381 1.15 0.00 40.79 4.96
2013 2221 2.620367 GGCAAATACAGACATGTGGGGA 60.620 50.000 1.15 0.00 40.79 4.81
2014 2222 3.088532 GCAAATACAGACATGTGGGGAA 58.911 45.455 1.15 0.00 40.79 3.97
2015 2223 3.119495 GCAAATACAGACATGTGGGGAAC 60.119 47.826 1.15 0.00 40.79 3.62
2017 2225 0.036765 TACAGACATGTGGGGAACGC 60.037 55.000 1.15 0.00 40.79 4.84
2018 2226 2.040544 CAGACATGTGGGGAACGCC 61.041 63.158 1.15 0.85 42.25 5.68
2019 2227 2.224159 AGACATGTGGGGAACGCCT 61.224 57.895 1.15 0.00 42.25 5.52
2020 2228 1.303317 GACATGTGGGGAACGCCTT 60.303 57.895 1.15 0.00 42.25 4.35
2021 2229 1.586154 GACATGTGGGGAACGCCTTG 61.586 60.000 1.15 6.90 42.25 3.61
2023 2231 3.505790 ATGTGGGGAACGCCTTGCA 62.506 57.895 9.19 6.26 42.25 4.08
2025 2233 3.884774 TGGGGAACGCCTTGCAGT 61.885 61.111 9.19 0.00 42.25 4.40
2026 2234 2.349755 GGGGAACGCCTTGCAGTA 59.650 61.111 0.60 0.00 34.11 2.74
2027 2235 1.077716 GGGGAACGCCTTGCAGTAT 60.078 57.895 0.60 0.00 34.11 2.12
2028 2236 0.679960 GGGGAACGCCTTGCAGTATT 60.680 55.000 0.60 0.00 34.11 1.89
2029 2237 1.173913 GGGAACGCCTTGCAGTATTT 58.826 50.000 0.00 0.00 0.00 1.40
2030 2238 1.135402 GGGAACGCCTTGCAGTATTTG 60.135 52.381 0.00 0.00 0.00 2.32
2031 2239 1.810151 GGAACGCCTTGCAGTATTTGA 59.190 47.619 0.00 0.00 0.00 2.69
2032 2240 2.423538 GGAACGCCTTGCAGTATTTGAT 59.576 45.455 0.00 0.00 0.00 2.57
2033 2241 3.429085 GAACGCCTTGCAGTATTTGATG 58.571 45.455 0.00 0.00 0.00 3.07
2034 2242 1.745087 ACGCCTTGCAGTATTTGATGG 59.255 47.619 0.00 0.00 0.00 3.51
2035 2243 2.016318 CGCCTTGCAGTATTTGATGGA 58.984 47.619 0.00 0.00 0.00 3.41
2036 2244 2.032550 CGCCTTGCAGTATTTGATGGAG 59.967 50.000 0.00 0.00 0.00 3.86
2037 2245 2.223665 GCCTTGCAGTATTTGATGGAGC 60.224 50.000 0.00 0.00 0.00 4.70
2038 2246 2.360165 CCTTGCAGTATTTGATGGAGCC 59.640 50.000 0.00 0.00 0.00 4.70
2039 2247 1.667236 TGCAGTATTTGATGGAGCCG 58.333 50.000 0.00 0.00 0.00 5.52
2040 2248 1.065491 TGCAGTATTTGATGGAGCCGT 60.065 47.619 0.00 0.00 0.00 5.68
2041 2249 1.331756 GCAGTATTTGATGGAGCCGTG 59.668 52.381 0.00 0.00 0.00 4.94
2076 2284 1.001746 CTCCTGCCATGTCGCTATCAT 59.998 52.381 0.00 0.00 0.00 2.45
2139 2523 3.078837 ACACAACCGAAGTTTGTTGTCT 58.921 40.909 17.21 7.68 32.45 3.41
2249 4505 1.737793 GCCAAGTCCGGTCTTGTATTG 59.262 52.381 30.77 20.29 42.01 1.90
2343 4870 3.316868 GCTTAGTATGAGACGAGGCTTCT 59.683 47.826 0.00 0.00 33.68 2.85
2368 4895 4.096231 CGGAACATGACTTGGATTGCAATA 59.904 41.667 12.97 0.00 0.00 1.90
2392 4919 6.403866 TTTCATGCCACAACTTTCAAGTAT 57.596 33.333 0.00 0.00 38.57 2.12
2438 4966 1.910580 TTGTGATCCCCTCCGGCTTC 61.911 60.000 0.00 0.00 0.00 3.86
2471 4999 4.773674 TCGATCCCAAGGTAGTAACTCAAA 59.226 41.667 0.00 0.00 0.00 2.69
2528 5664 7.656412 TCATTTGTAGCTTGAAGTTTGCAATA 58.344 30.769 0.00 0.00 0.00 1.90
2530 5666 8.928733 CATTTGTAGCTTGAAGTTTGCAATAAT 58.071 29.630 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 84 0.394762 ATGCTCATGGGTGACGCAAT 60.395 50.000 6.39 0.00 39.85 3.56
86 89 5.907207 ACGATATATATGCTCATGGGTGAC 58.093 41.667 0.00 0.00 0.00 3.67
136 139 7.715657 AGAATCATGAGATACAGTCAGACTTC 58.284 38.462 0.00 0.00 33.08 3.01
145 148 9.932699 GTCAAATTCAAGAATCATGAGATACAG 57.067 33.333 0.09 0.00 33.08 2.74
203 206 9.993881 CACACAAAAATCTTATTTCGATGAAAC 57.006 29.630 0.00 0.00 34.23 2.78
284 287 9.364989 CAGGTTTGTAATCTTCTTGAAAACAAA 57.635 29.630 0.00 0.00 39.18 2.83
286 289 7.488322 CCAGGTTTGTAATCTTCTTGAAAACA 58.512 34.615 0.00 0.00 0.00 2.83
308 311 6.272318 TGTTTTGAAAAAGTATCAGTGCCAG 58.728 36.000 0.00 0.00 0.00 4.85
310 313 7.713764 AATGTTTTGAAAAAGTATCAGTGCC 57.286 32.000 0.00 0.00 0.00 5.01
338 446 2.287188 TGTGACGTTAGTTGTCGAGTCC 60.287 50.000 0.00 0.00 39.22 3.85
353 461 2.299294 AAACACCGCAACGTGTGACG 62.299 55.000 10.39 8.47 46.19 4.35
381 490 2.825532 GGTTGGGCTTGCAATTAGAGAA 59.174 45.455 0.00 0.00 0.00 2.87
393 502 2.101640 AAAACTGGATGGTTGGGCTT 57.898 45.000 0.00 0.00 0.00 4.35
446 559 6.276832 ACTCAACTCATCAATCCATTTTGG 57.723 37.500 0.00 0.00 39.43 3.28
447 560 6.152323 AGGACTCAACTCATCAATCCATTTTG 59.848 38.462 0.00 0.00 0.00 2.44
485 601 4.365723 ACACAACTAAACCTGAGTGTACG 58.634 43.478 0.00 0.00 38.32 3.67
489 605 5.817816 AGAAAGACACAACTAAACCTGAGTG 59.182 40.000 0.00 0.00 0.00 3.51
500 616 7.807977 ACATACATTTCAGAAAGACACAACT 57.192 32.000 1.28 0.00 0.00 3.16
513 629 8.684386 TGTACCTTTGAAGAACATACATTTCA 57.316 30.769 0.00 0.00 0.00 2.69
528 644 9.109393 GACTATTTGCAGATATTGTACCTTTGA 57.891 33.333 0.00 0.00 0.00 2.69
552 668 3.631145 TTTGCAGAACAATGAGCTGAC 57.369 42.857 10.25 4.04 38.31 3.51
557 673 7.416154 AAATTGTCATTTGCAGAACAATGAG 57.584 32.000 10.99 0.00 38.31 2.90
560 676 7.499895 AGGAAAAATTGTCATTTGCAGAACAAT 59.500 29.630 10.46 10.46 38.31 2.71
592 709 6.040391 AGCTTGGAAATAGCAACACAAAACTA 59.960 34.615 0.00 0.00 41.11 2.24
593 710 5.049828 GCTTGGAAATAGCAACACAAAACT 58.950 37.500 0.00 0.00 38.51 2.66
647 768 7.009540 GCCGATTGAATCAAATGACCTAAAAAG 59.990 37.037 5.95 0.00 0.00 2.27
654 775 3.129287 ACTGCCGATTGAATCAAATGACC 59.871 43.478 5.95 0.00 0.00 4.02
657 778 4.100529 GACACTGCCGATTGAATCAAATG 58.899 43.478 5.95 0.00 0.00 2.32
658 779 3.758023 TGACACTGCCGATTGAATCAAAT 59.242 39.130 5.95 0.00 0.00 2.32
665 786 6.287525 TGATTTATATGACACTGCCGATTGA 58.712 36.000 0.00 0.00 0.00 2.57
668 789 8.846943 TTATTGATTTATATGACACTGCCGAT 57.153 30.769 0.00 0.00 0.00 4.18
721 892 8.767478 AAGTTGAAGAAAATATTCCAGCAATG 57.233 30.769 0.00 0.00 36.12 2.82
722 893 9.211485 CAAAGTTGAAGAAAATATTCCAGCAAT 57.789 29.630 0.00 0.00 36.12 3.56
723 894 8.203485 ACAAAGTTGAAGAAAATATTCCAGCAA 58.797 29.630 0.00 0.00 36.12 3.91
724 895 7.652909 CACAAAGTTGAAGAAAATATTCCAGCA 59.347 33.333 0.00 0.00 36.12 4.41
725 896 7.653311 ACACAAAGTTGAAGAAAATATTCCAGC 59.347 33.333 0.00 0.00 36.12 4.85
726 897 9.533253 AACACAAAGTTGAAGAAAATATTCCAG 57.467 29.630 0.00 0.00 39.49 3.86
727 898 9.883142 AAACACAAAGTTGAAGAAAATATTCCA 57.117 25.926 0.00 0.00 41.19 3.53
733 904 9.487790 TTGAGAAAACACAAAGTTGAAGAAAAT 57.512 25.926 0.00 0.00 41.19 1.82
734 905 8.879342 TTGAGAAAACACAAAGTTGAAGAAAA 57.121 26.923 0.00 0.00 41.19 2.29
735 906 9.139174 GATTGAGAAAACACAAAGTTGAAGAAA 57.861 29.630 0.00 0.00 41.19 2.52
736 907 7.759433 GGATTGAGAAAACACAAAGTTGAAGAA 59.241 33.333 0.00 0.00 41.19 2.52
737 908 7.122650 AGGATTGAGAAAACACAAAGTTGAAGA 59.877 33.333 0.00 0.00 41.19 2.87
738 909 7.260603 AGGATTGAGAAAACACAAAGTTGAAG 58.739 34.615 0.00 0.00 41.19 3.02
739 910 7.169158 AGGATTGAGAAAACACAAAGTTGAA 57.831 32.000 0.00 0.00 41.19 2.69
740 911 6.773976 AGGATTGAGAAAACACAAAGTTGA 57.226 33.333 0.00 0.00 41.19 3.18
789 960 9.177608 TCATAACAATCTATTCCCTTTCAACAG 57.822 33.333 0.00 0.00 0.00 3.16
832 1003 8.084684 AGGAACAAAAGATTGCAGAAATAAGAC 58.915 33.333 0.00 0.00 40.34 3.01
839 1010 8.474025 TCTTTTAAGGAACAAAAGATTGCAGAA 58.526 29.630 6.24 0.00 43.56 3.02
840 1011 8.006298 TCTTTTAAGGAACAAAAGATTGCAGA 57.994 30.769 6.24 0.00 43.56 4.26
841 1012 8.647143 TTCTTTTAAGGAACAAAAGATTGCAG 57.353 30.769 10.17 0.00 46.14 4.41
846 1017 9.875691 GCCATATTCTTTTAAGGAACAAAAGAT 57.124 29.630 10.17 5.10 46.14 2.40
847 1018 8.865090 TGCCATATTCTTTTAAGGAACAAAAGA 58.135 29.630 6.24 6.24 45.57 2.52
848 1019 9.657419 ATGCCATATTCTTTTAAGGAACAAAAG 57.343 29.630 0.00 1.97 42.02 2.27
855 1026 9.515226 GTGGTATATGCCATATTCTTTTAAGGA 57.485 33.333 16.13 0.00 41.08 3.36
856 1027 9.520515 AGTGGTATATGCCATATTCTTTTAAGG 57.479 33.333 16.13 0.00 41.08 2.69
869 1040 5.133660 AGGGAAAATGTAGTGGTATATGCCA 59.866 40.000 8.67 8.67 35.93 4.92
890 1061 3.294214 AGAGGCATGCAATTAGAAAGGG 58.706 45.455 21.36 0.00 0.00 3.95
998 1169 2.675242 CCCGTCCCCACAGCCATTA 61.675 63.158 0.00 0.00 0.00 1.90
1013 1184 2.125350 GCTTCACCTGCTCTCCCG 60.125 66.667 0.00 0.00 0.00 5.14
1021 1192 1.604593 CCCCCAACAGCTTCACCTG 60.605 63.158 0.00 0.00 38.78 4.00
1092 1263 3.068165 CCTCCATGTATTCGTAGCTCACA 59.932 47.826 0.00 0.00 0.00 3.58
1139 1310 4.475135 GGTTGGAGCGGAGGAGCC 62.475 72.222 0.00 0.00 38.01 4.70
1188 1359 1.302383 CGCAGATTGGTTTACCGCCA 61.302 55.000 0.00 0.00 39.43 5.69
1194 1365 1.626321 TGGGACTCGCAGATTGGTTTA 59.374 47.619 0.00 0.00 33.89 2.01
1200 1371 1.568504 TTACCTGGGACTCGCAGATT 58.431 50.000 21.65 11.94 45.41 2.40
1227 1398 0.311165 CGAAGGCCTCGTCGATGTAT 59.689 55.000 20.03 0.00 45.29 2.29
1332 1509 1.586028 CATTCCCCACGGCAACAAG 59.414 57.895 0.00 0.00 0.00 3.16
1333 1510 2.569354 GCATTCCCCACGGCAACAA 61.569 57.895 0.00 0.00 0.00 2.83
1337 1514 2.905996 AAGAGCATTCCCCACGGCA 61.906 57.895 0.00 0.00 0.00 5.69
1362 1548 1.658686 CCCTCTCCTCGTCCGTCTTG 61.659 65.000 0.00 0.00 0.00 3.02
1383 1575 1.979693 GGTCTGCCTCGTCCACTCT 60.980 63.158 0.00 0.00 0.00 3.24
1402 1594 2.780643 CACATCAACCGCTGCGAG 59.219 61.111 25.45 15.86 0.00 5.03
1413 1605 1.550524 ACGCCTTCTTCTAGCACATCA 59.449 47.619 0.00 0.00 0.00 3.07
1418 1610 0.532573 CCTCACGCCTTCTTCTAGCA 59.467 55.000 0.00 0.00 0.00 3.49
1422 1614 0.543174 ACTCCCTCACGCCTTCTTCT 60.543 55.000 0.00 0.00 0.00 2.85
1425 1617 2.948720 GCACTCCCTCACGCCTTCT 61.949 63.158 0.00 0.00 0.00 2.85
1446 1638 1.202405 CCAAAGAACACCTTGCGCTTT 60.202 47.619 9.73 0.00 34.79 3.51
1450 1648 1.370414 CGCCAAAGAACACCTTGCG 60.370 57.895 0.00 0.00 39.67 4.85
1457 1655 1.144276 TCGTCACCGCCAAAGAACA 59.856 52.632 0.00 0.00 0.00 3.18
1479 1683 2.439883 AGGACGTCGAGGTAGCCC 60.440 66.667 11.30 8.48 0.00 5.19
1515 1719 1.079405 CTTGGTCGCGTACACCCAT 60.079 57.895 12.42 0.00 32.24 4.00
1531 1739 5.187967 AGAAGTTGTGACCGGATATCTTCTT 59.812 40.000 9.46 4.28 37.63 2.52
1539 1747 1.697432 TCCAAGAAGTTGTGACCGGAT 59.303 47.619 9.46 0.00 30.95 4.18
1676 1884 1.068127 AGTTGCTTACAGTCGTTCCGT 59.932 47.619 0.00 0.00 0.00 4.69
1680 1888 5.178809 GGTTTATCAGTTGCTTACAGTCGTT 59.821 40.000 0.00 0.00 0.00 3.85
1684 1892 3.435671 GCGGTTTATCAGTTGCTTACAGT 59.564 43.478 0.00 0.00 0.00 3.55
1738 1946 9.988815 GTAGTGAATAGTCATGGAAATAGACAT 57.011 33.333 0.00 0.00 35.80 3.06
1748 1956 8.303156 CCAGATTCTAGTAGTGAATAGTCATGG 58.697 40.741 0.00 0.00 35.80 3.66
1753 1961 9.877178 CAAAACCAGATTCTAGTAGTGAATAGT 57.123 33.333 0.00 0.00 34.67 2.12
1755 1963 9.871238 GACAAAACCAGATTCTAGTAGTGAATA 57.129 33.333 0.00 0.00 34.67 1.75
1759 1967 5.875359 GGGACAAAACCAGATTCTAGTAGTG 59.125 44.000 0.00 0.00 0.00 2.74
1760 1968 5.337330 CGGGACAAAACCAGATTCTAGTAGT 60.337 44.000 0.00 0.00 0.00 2.73
1762 1970 4.773674 TCGGGACAAAACCAGATTCTAGTA 59.226 41.667 0.00 0.00 0.00 1.82
1763 1971 3.581332 TCGGGACAAAACCAGATTCTAGT 59.419 43.478 0.00 0.00 0.00 2.57
1764 1972 4.184629 CTCGGGACAAAACCAGATTCTAG 58.815 47.826 0.00 0.00 34.10 2.43
1765 1973 3.581332 ACTCGGGACAAAACCAGATTCTA 59.419 43.478 0.00 0.00 34.10 2.10
1767 1975 2.779506 ACTCGGGACAAAACCAGATTC 58.220 47.619 0.00 0.00 34.10 2.52
1768 1976 2.951229 ACTCGGGACAAAACCAGATT 57.049 45.000 0.00 0.00 34.10 2.40
1769 1977 2.027469 GGTACTCGGGACAAAACCAGAT 60.027 50.000 0.00 0.00 34.10 2.90
1770 1978 1.345415 GGTACTCGGGACAAAACCAGA 59.655 52.381 0.00 0.00 33.56 3.86
1771 1979 1.071071 TGGTACTCGGGACAAAACCAG 59.929 52.381 0.00 0.00 33.28 4.00
1772 1980 1.129917 TGGTACTCGGGACAAAACCA 58.870 50.000 0.00 0.00 34.73 3.67
1773 1981 2.148768 CTTGGTACTCGGGACAAAACC 58.851 52.381 0.00 0.00 0.00 3.27
1774 1982 2.804527 GTCTTGGTACTCGGGACAAAAC 59.195 50.000 0.00 0.00 0.00 2.43
1775 1983 2.435069 TGTCTTGGTACTCGGGACAAAA 59.565 45.455 0.00 0.00 34.58 2.44
1776 1984 2.040939 TGTCTTGGTACTCGGGACAAA 58.959 47.619 0.00 0.00 34.58 2.83
1777 1985 1.707106 TGTCTTGGTACTCGGGACAA 58.293 50.000 0.00 0.00 34.58 3.18
1778 1986 1.822990 GATGTCTTGGTACTCGGGACA 59.177 52.381 0.00 11.46 40.43 4.02
1779 1987 1.822990 TGATGTCTTGGTACTCGGGAC 59.177 52.381 0.00 0.00 0.00 4.46
1780 1988 1.822990 GTGATGTCTTGGTACTCGGGA 59.177 52.381 0.00 0.00 0.00 5.14
1781 1989 1.134788 GGTGATGTCTTGGTACTCGGG 60.135 57.143 0.00 0.00 0.00 5.14
1782 1990 1.469251 CGGTGATGTCTTGGTACTCGG 60.469 57.143 0.00 0.00 0.00 4.63
1783 1991 1.471287 TCGGTGATGTCTTGGTACTCG 59.529 52.381 0.00 0.00 0.00 4.18
1784 1992 2.492484 ACTCGGTGATGTCTTGGTACTC 59.508 50.000 0.00 0.00 0.00 2.59
1786 1994 3.314541 AACTCGGTGATGTCTTGGTAC 57.685 47.619 0.00 0.00 0.00 3.34
1808 2016 1.806542 GCCGAGCTCATGACAGAAAAA 59.193 47.619 15.40 0.00 0.00 1.94
1812 2020 0.321346 TTTGCCGAGCTCATGACAGA 59.679 50.000 15.40 0.00 0.00 3.41
1813 2021 0.445436 GTTTGCCGAGCTCATGACAG 59.555 55.000 15.40 0.00 0.00 3.51
1815 2023 1.129437 GAAGTTTGCCGAGCTCATGAC 59.871 52.381 15.40 4.69 0.00 3.06
1817 2025 1.396301 GAGAAGTTTGCCGAGCTCATG 59.604 52.381 15.40 5.13 0.00 3.07
1822 2030 1.328986 GCATAGAGAAGTTTGCCGAGC 59.671 52.381 0.00 0.00 0.00 5.03
1823 2031 1.936547 GGCATAGAGAAGTTTGCCGAG 59.063 52.381 0.00 0.00 44.58 4.63
1824 2032 2.024176 GGCATAGAGAAGTTTGCCGA 57.976 50.000 0.00 0.00 44.58 5.54
1830 2038 2.753452 TCGAACTCGGCATAGAGAAGTT 59.247 45.455 9.58 0.00 40.57 2.66
1831 2039 2.366533 TCGAACTCGGCATAGAGAAGT 58.633 47.619 9.58 0.00 40.57 3.01
1832 2040 3.560503 GATCGAACTCGGCATAGAGAAG 58.439 50.000 9.58 2.07 40.57 2.85
1834 2042 1.880675 GGATCGAACTCGGCATAGAGA 59.119 52.381 9.58 0.00 40.57 3.10
1835 2043 1.609072 TGGATCGAACTCGGCATAGAG 59.391 52.381 0.00 2.16 43.56 2.43
1836 2044 1.687563 TGGATCGAACTCGGCATAGA 58.312 50.000 0.00 0.00 40.29 1.98
1838 2046 2.971660 TTTGGATCGAACTCGGCATA 57.028 45.000 0.00 0.00 40.29 3.14
1839 2047 2.107950 TTTTGGATCGAACTCGGCAT 57.892 45.000 0.00 0.00 40.29 4.40
1840 2048 2.107950 ATTTTGGATCGAACTCGGCA 57.892 45.000 0.00 0.00 40.29 5.69
1841 2049 2.161609 ACAATTTTGGATCGAACTCGGC 59.838 45.455 0.00 0.00 40.29 5.54
1842 2050 4.630069 AGTACAATTTTGGATCGAACTCGG 59.370 41.667 0.00 0.00 40.29 4.63
1843 2051 5.120208 ACAGTACAATTTTGGATCGAACTCG 59.880 40.000 0.00 0.00 41.45 4.18
1844 2052 6.481954 ACAGTACAATTTTGGATCGAACTC 57.518 37.500 0.00 0.00 0.00 3.01
1845 2053 7.159372 ACTACAGTACAATTTTGGATCGAACT 58.841 34.615 0.00 0.00 0.00 3.01
1846 2054 7.360575 ACTACAGTACAATTTTGGATCGAAC 57.639 36.000 0.00 0.00 0.00 3.95
1847 2055 6.309494 CGACTACAGTACAATTTTGGATCGAA 59.691 38.462 0.00 0.00 0.00 3.71
1850 2058 6.237490 CGTCGACTACAGTACAATTTTGGATC 60.237 42.308 14.70 0.00 0.00 3.36
1851 2059 5.575606 CGTCGACTACAGTACAATTTTGGAT 59.424 40.000 14.70 0.00 0.00 3.41
1853 2061 4.090930 CCGTCGACTACAGTACAATTTTGG 59.909 45.833 14.70 0.00 0.00 3.28
1854 2062 4.682860 ACCGTCGACTACAGTACAATTTTG 59.317 41.667 14.70 0.00 0.00 2.44
1855 2063 4.682860 CACCGTCGACTACAGTACAATTTT 59.317 41.667 14.70 0.00 0.00 1.82
1856 2064 4.022935 TCACCGTCGACTACAGTACAATTT 60.023 41.667 14.70 0.00 0.00 1.82
1858 2066 3.076621 TCACCGTCGACTACAGTACAAT 58.923 45.455 14.70 0.00 0.00 2.71
1859 2067 2.493035 TCACCGTCGACTACAGTACAA 58.507 47.619 14.70 0.00 0.00 2.41
1860 2068 2.168326 TCACCGTCGACTACAGTACA 57.832 50.000 14.70 0.00 0.00 2.90
1861 2069 4.784710 GCTTATCACCGTCGACTACAGTAC 60.785 50.000 14.70 0.00 0.00 2.73
1862 2070 3.310774 GCTTATCACCGTCGACTACAGTA 59.689 47.826 14.70 0.00 0.00 2.74
1863 2071 2.097142 GCTTATCACCGTCGACTACAGT 59.903 50.000 14.70 2.81 0.00 3.55
1865 2073 2.086094 TGCTTATCACCGTCGACTACA 58.914 47.619 14.70 0.00 0.00 2.74
1866 2074 2.838386 TGCTTATCACCGTCGACTAC 57.162 50.000 14.70 0.00 0.00 2.73
1869 2077 2.386249 GAGATGCTTATCACCGTCGAC 58.614 52.381 5.18 5.18 0.00 4.20
1870 2078 1.002792 CGAGATGCTTATCACCGTCGA 60.003 52.381 0.00 0.00 30.38 4.20
1871 2079 1.399572 CGAGATGCTTATCACCGTCG 58.600 55.000 0.00 0.00 0.00 5.12
1873 2081 0.249489 GCCGAGATGCTTATCACCGT 60.249 55.000 0.00 0.00 0.00 4.83
1874 2082 0.249447 TGCCGAGATGCTTATCACCG 60.249 55.000 0.00 0.00 0.00 4.94
1875 2083 1.069204 TCTGCCGAGATGCTTATCACC 59.931 52.381 0.00 0.00 0.00 4.02
1877 2085 1.269988 GCTCTGCCGAGATGCTTATCA 60.270 52.381 9.60 0.00 39.74 2.15
1878 2086 1.000731 AGCTCTGCCGAGATGCTTATC 59.999 52.381 9.60 0.00 39.74 1.75
1879 2087 1.047002 AGCTCTGCCGAGATGCTTAT 58.953 50.000 9.60 0.00 39.74 1.73
1880 2088 0.103755 CAGCTCTGCCGAGATGCTTA 59.896 55.000 10.50 0.00 45.47 3.09
1881 2089 1.153409 CAGCTCTGCCGAGATGCTT 60.153 57.895 10.50 0.00 45.47 3.91
1882 2090 2.500165 CAGCTCTGCCGAGATGCT 59.500 61.111 10.50 0.00 45.47 3.79
1885 2093 2.186384 GCACAGCTCTGCCGAGAT 59.814 61.111 9.60 0.00 39.74 2.75
1892 2100 1.863662 CTGGCAAAGGCACAGCTCTG 61.864 60.000 0.00 0.00 43.71 3.35
1893 2101 1.602888 CTGGCAAAGGCACAGCTCT 60.603 57.895 0.00 0.00 43.71 4.09
1897 2105 1.177256 AGAAGCTGGCAAAGGCACAG 61.177 55.000 0.00 0.00 43.71 3.66
1898 2106 1.152694 AGAAGCTGGCAAAGGCACA 60.153 52.632 0.00 0.00 43.71 4.57
1900 2108 0.251474 ATCAGAAGCTGGCAAAGGCA 60.251 50.000 0.00 0.00 43.71 4.75
1902 2110 4.789012 TTTAATCAGAAGCTGGCAAAGG 57.211 40.909 0.00 0.00 31.51 3.11
1903 2111 5.632347 CAGTTTTAATCAGAAGCTGGCAAAG 59.368 40.000 0.00 0.00 33.39 2.77
1906 2114 4.397420 TCAGTTTTAATCAGAAGCTGGCA 58.603 39.130 0.00 0.00 36.41 4.92
1907 2115 4.457257 ACTCAGTTTTAATCAGAAGCTGGC 59.543 41.667 0.00 0.00 36.41 4.85
1908 2116 5.163913 CGACTCAGTTTTAATCAGAAGCTGG 60.164 44.000 0.00 0.00 36.41 4.85
1909 2117 5.163913 CCGACTCAGTTTTAATCAGAAGCTG 60.164 44.000 0.00 0.00 36.88 4.24
1910 2118 4.932200 CCGACTCAGTTTTAATCAGAAGCT 59.068 41.667 0.00 0.00 0.00 3.74
1914 2122 3.057104 TCGCCGACTCAGTTTTAATCAGA 60.057 43.478 0.00 0.00 0.00 3.27
1915 2123 3.250744 TCGCCGACTCAGTTTTAATCAG 58.749 45.455 0.00 0.00 0.00 2.90
1917 2125 3.430895 TGTTCGCCGACTCAGTTTTAATC 59.569 43.478 0.00 0.00 0.00 1.75
1918 2126 3.395639 TGTTCGCCGACTCAGTTTTAAT 58.604 40.909 0.00 0.00 0.00 1.40
1919 2127 2.823984 TGTTCGCCGACTCAGTTTTAA 58.176 42.857 0.00 0.00 0.00 1.52
1920 2128 2.512485 TGTTCGCCGACTCAGTTTTA 57.488 45.000 0.00 0.00 0.00 1.52
1923 2131 1.658994 TTTTGTTCGCCGACTCAGTT 58.341 45.000 0.00 0.00 0.00 3.16
1924 2132 1.658994 TTTTTGTTCGCCGACTCAGT 58.341 45.000 0.00 0.00 0.00 3.41
1944 2152 2.783135 ACATGTGATTCTGCCGAGTTT 58.217 42.857 0.00 0.00 0.00 2.66
1945 2153 2.479566 ACATGTGATTCTGCCGAGTT 57.520 45.000 0.00 0.00 0.00 3.01
1947 2155 1.325640 CGAACATGTGATTCTGCCGAG 59.674 52.381 0.00 0.00 0.00 4.63
1949 2157 0.247814 GCGAACATGTGATTCTGCCG 60.248 55.000 0.00 0.00 0.00 5.69
1951 2159 0.247814 CGGCGAACATGTGATTCTGC 60.248 55.000 0.00 2.00 0.00 4.26
1952 2160 1.325640 CTCGGCGAACATGTGATTCTG 59.674 52.381 12.13 0.00 0.00 3.02
1953 2161 1.066858 ACTCGGCGAACATGTGATTCT 60.067 47.619 12.13 0.00 0.00 2.40
1956 2164 1.359848 GAACTCGGCGAACATGTGAT 58.640 50.000 12.13 0.00 0.00 3.06
1957 2165 0.669318 GGAACTCGGCGAACATGTGA 60.669 55.000 12.13 0.00 0.00 3.58
1958 2166 1.635663 GGGAACTCGGCGAACATGTG 61.636 60.000 12.13 0.00 0.00 3.21
1960 2168 2.452813 CGGGAACTCGGCGAACATG 61.453 63.158 12.13 0.92 0.00 3.21
1961 2169 2.125673 CGGGAACTCGGCGAACAT 60.126 61.111 12.13 0.00 0.00 2.71
1962 2170 3.296836 TCGGGAACTCGGCGAACA 61.297 61.111 12.13 0.00 0.00 3.18
1966 2174 3.277211 TTCTGTCGGGAACTCGGCG 62.277 63.158 0.00 0.00 37.60 6.46
1967 2175 1.446272 CTTCTGTCGGGAACTCGGC 60.446 63.158 0.00 0.00 35.05 5.54
1968 2176 0.601558 TTCTTCTGTCGGGAACTCGG 59.398 55.000 0.00 0.00 0.00 4.63
1969 2177 2.059541 GTTTCTTCTGTCGGGAACTCG 58.940 52.381 0.00 0.00 0.00 4.18
1971 2179 2.288273 CGAGTTTCTTCTGTCGGGAACT 60.288 50.000 0.00 0.00 0.00 3.01
1972 2180 2.059541 CGAGTTTCTTCTGTCGGGAAC 58.940 52.381 0.00 0.00 0.00 3.62
1974 2182 0.601558 CCGAGTTTCTTCTGTCGGGA 59.398 55.000 1.62 0.00 46.68 5.14
1979 2187 4.385825 TGTATTTGCCGAGTTTCTTCTGT 58.614 39.130 0.00 0.00 0.00 3.41
1980 2188 4.690748 TCTGTATTTGCCGAGTTTCTTCTG 59.309 41.667 0.00 0.00 0.00 3.02
1981 2189 4.691216 GTCTGTATTTGCCGAGTTTCTTCT 59.309 41.667 0.00 0.00 0.00 2.85
1982 2190 4.451096 TGTCTGTATTTGCCGAGTTTCTTC 59.549 41.667 0.00 0.00 0.00 2.87
1983 2191 4.385825 TGTCTGTATTTGCCGAGTTTCTT 58.614 39.130 0.00 0.00 0.00 2.52
1984 2192 4.002906 TGTCTGTATTTGCCGAGTTTCT 57.997 40.909 0.00 0.00 0.00 2.52
1985 2193 4.154195 ACATGTCTGTATTTGCCGAGTTTC 59.846 41.667 0.00 0.00 32.49 2.78
1988 2196 3.002791 CACATGTCTGTATTTGCCGAGT 58.997 45.455 0.00 0.00 33.14 4.18
1989 2197 2.352651 CCACATGTCTGTATTTGCCGAG 59.647 50.000 0.00 0.00 33.14 4.63
1990 2198 2.355197 CCACATGTCTGTATTTGCCGA 58.645 47.619 0.00 0.00 33.14 5.54
1991 2199 1.401552 CCCACATGTCTGTATTTGCCG 59.598 52.381 0.00 0.00 33.14 5.69
1992 2200 1.750778 CCCCACATGTCTGTATTTGCC 59.249 52.381 0.00 0.00 33.14 4.52
1993 2201 2.722094 TCCCCACATGTCTGTATTTGC 58.278 47.619 0.00 0.00 33.14 3.68
1994 2202 3.126858 CGTTCCCCACATGTCTGTATTTG 59.873 47.826 0.00 0.00 33.14 2.32
1995 2203 3.343617 CGTTCCCCACATGTCTGTATTT 58.656 45.455 0.00 0.00 33.14 1.40
1997 2205 1.406887 GCGTTCCCCACATGTCTGTAT 60.407 52.381 0.00 0.00 33.14 2.29
2000 2208 2.040544 GGCGTTCCCCACATGTCTG 61.041 63.158 0.00 0.00 0.00 3.51
2001 2209 1.779061 AAGGCGTTCCCCACATGTCT 61.779 55.000 0.00 0.00 0.00 3.41
2002 2210 1.303317 AAGGCGTTCCCCACATGTC 60.303 57.895 0.00 0.00 0.00 3.06
2003 2211 1.603455 CAAGGCGTTCCCCACATGT 60.603 57.895 0.00 0.00 0.00 3.21
2004 2212 2.993471 GCAAGGCGTTCCCCACATG 61.993 63.158 0.00 0.00 0.00 3.21
2005 2213 2.676471 GCAAGGCGTTCCCCACAT 60.676 61.111 0.00 0.00 0.00 3.21
2006 2214 4.196778 TGCAAGGCGTTCCCCACA 62.197 61.111 0.00 0.00 0.00 4.17
2007 2215 2.741486 TACTGCAAGGCGTTCCCCAC 62.741 60.000 0.00 0.00 39.30 4.61
2008 2216 1.847798 ATACTGCAAGGCGTTCCCCA 61.848 55.000 0.00 0.00 39.30 4.96
2009 2217 0.679960 AATACTGCAAGGCGTTCCCC 60.680 55.000 0.00 0.00 39.30 4.81
2010 2218 1.135402 CAAATACTGCAAGGCGTTCCC 60.135 52.381 0.00 0.00 39.30 3.97
2011 2219 1.810151 TCAAATACTGCAAGGCGTTCC 59.190 47.619 0.00 0.00 39.30 3.62
2012 2220 3.429085 CATCAAATACTGCAAGGCGTTC 58.571 45.455 0.00 0.00 39.30 3.95
2013 2221 2.164219 CCATCAAATACTGCAAGGCGTT 59.836 45.455 0.00 0.00 39.30 4.84
2014 2222 1.745087 CCATCAAATACTGCAAGGCGT 59.255 47.619 0.00 0.00 39.30 5.68
2015 2223 2.016318 TCCATCAAATACTGCAAGGCG 58.984 47.619 0.00 0.00 39.30 5.52
2017 2225 2.360165 GGCTCCATCAAATACTGCAAGG 59.640 50.000 0.00 0.00 39.30 3.61
2018 2226 2.032550 CGGCTCCATCAAATACTGCAAG 59.967 50.000 0.00 0.00 42.29 4.01
2019 2227 2.016318 CGGCTCCATCAAATACTGCAA 58.984 47.619 0.00 0.00 0.00 4.08
2020 2228 1.065491 ACGGCTCCATCAAATACTGCA 60.065 47.619 0.00 0.00 0.00 4.41
2021 2229 1.331756 CACGGCTCCATCAAATACTGC 59.668 52.381 0.00 0.00 0.00 4.40
2023 2231 2.738643 CGTCACGGCTCCATCAAATACT 60.739 50.000 0.00 0.00 0.00 2.12
2025 2233 1.472552 CCGTCACGGCTCCATCAAATA 60.473 52.381 1.50 0.00 41.17 1.40
2026 2234 0.744414 CCGTCACGGCTCCATCAAAT 60.744 55.000 1.50 0.00 41.17 2.32
2027 2235 1.375396 CCGTCACGGCTCCATCAAA 60.375 57.895 1.50 0.00 41.17 2.69
2028 2236 2.264480 CCGTCACGGCTCCATCAA 59.736 61.111 1.50 0.00 41.17 2.57
2038 2246 0.173481 AGATGTGGATGACCGTCACG 59.827 55.000 2.57 0.00 39.42 4.35
2039 2247 1.471676 GGAGATGTGGATGACCGTCAC 60.472 57.143 2.57 0.00 39.42 3.67
2040 2248 0.824109 GGAGATGTGGATGACCGTCA 59.176 55.000 3.10 3.10 39.42 4.35
2041 2249 1.115467 AGGAGATGTGGATGACCGTC 58.885 55.000 0.00 0.00 39.42 4.79
2048 2256 1.142465 GACATGGCAGGAGATGTGGAT 59.858 52.381 5.99 0.00 32.85 3.41
2076 2284 6.136857 AGATGGTGGAGCTACTTGACTATAA 58.863 40.000 0.00 0.00 0.00 0.98
2139 2523 9.832445 GGAAAATATACTCAGGTACATCAAAGA 57.168 33.333 0.00 0.00 0.00 2.52
2343 4870 2.487762 GCAATCCAAGTCATGTTCCGAA 59.512 45.455 0.00 0.00 0.00 4.30
2368 4895 5.280654 ACTTGAAAGTTGTGGCATGAAAT 57.719 34.783 0.00 0.00 35.21 2.17
2392 4919 3.448301 CCAGGAGGCATATGCAAAGAAAA 59.552 43.478 28.07 0.00 44.36 2.29
2438 4966 2.418746 CCTTGGGATCGAGGTACAACAG 60.419 54.545 0.00 0.00 39.30 3.16
2471 4999 4.293494 TCAAGATGACTGATCTAGGGCTT 58.707 43.478 0.00 0.00 40.89 4.35
2528 5664 2.175202 ACTGGAGCAGACGAAGAGATT 58.825 47.619 0.00 0.00 35.18 2.40
2530 5666 1.621992 AACTGGAGCAGACGAAGAGA 58.378 50.000 0.00 0.00 35.18 3.10
2678 6285 2.899339 GAAGCTCCTCGGGCATGC 60.899 66.667 9.90 9.90 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.