Multiple sequence alignment - TraesCS7D01G053600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G053600 chr7D 100.000 4726 0 0 1 4726 28045472 28050197 0.000000e+00 8728.0
1 TraesCS7D01G053600 chr7D 89.513 677 34 26 1215 1877 27421945 27422598 0.000000e+00 822.0
2 TraesCS7D01G053600 chr7D 84.065 615 39 24 4151 4726 28059843 28060437 5.380000e-149 538.0
3 TraesCS7D01G053600 chr4A 88.946 3682 189 94 330 3917 701883578 701887135 0.000000e+00 4344.0
4 TraesCS7D01G053600 chr4A 81.897 464 60 13 4226 4679 701891227 701891676 2.080000e-98 370.0
5 TraesCS7D01G053600 chr4A 77.778 513 64 24 4223 4710 701887681 701888168 2.170000e-68 270.0
6 TraesCS7D01G053600 chr4A 81.212 330 41 11 4409 4726 701899220 701899540 3.650000e-61 246.0
7 TraesCS7D01G053600 chr4A 88.108 185 20 2 4543 4726 701937771 701937954 7.960000e-53 219.0
8 TraesCS7D01G053600 chr4A 79.109 359 32 19 4306 4623 701910673 701911029 1.720000e-49 207.0
9 TraesCS7D01G053600 chr4A 86.111 180 18 4 4547 4726 701935884 701936056 2.250000e-43 187.0
10 TraesCS7D01G053600 chr4A 76.620 432 29 28 4223 4617 701929531 701929927 6.290000e-39 172.0
11 TraesCS7D01G053600 chr4A 81.395 215 24 8 4528 4726 701889785 701889999 1.360000e-35 161.0
12 TraesCS7D01G053600 chr4A 80.503 159 26 3 4541 4699 702346321 702346474 2.990000e-22 117.0
13 TraesCS7D01G053600 chr4A 91.781 73 2 2 3587 3659 701899731 701899799 1.080000e-16 99.0
14 TraesCS7D01G053600 chr4A 92.157 51 4 0 4097 4147 701889397 701889447 6.560000e-09 73.1
15 TraesCS7D01G053600 chr7A 92.951 2752 104 43 1163 3885 28464140 28466830 0.000000e+00 3925.0
16 TraesCS7D01G053600 chr7A 87.902 653 45 23 1215 1857 108493182 108492554 0.000000e+00 737.0
17 TraesCS7D01G053600 chr7A 83.826 507 29 16 617 1091 28463655 28464140 2.610000e-117 433.0
18 TraesCS7D01G053600 chr7A 81.505 465 56 19 4226 4679 28472687 28473132 5.820000e-94 355.0
19 TraesCS7D01G053600 chr7A 83.696 184 24 5 4544 4726 28471228 28471406 8.130000e-38 169.0
20 TraesCS7D01G053600 chr7A 85.976 164 15 1 4531 4686 28480642 28480805 8.130000e-38 169.0
21 TraesCS7D01G053600 chr7A 85.000 160 11 7 4378 4527 28503563 28503719 2.950000e-32 150.0
22 TraesCS7D01G053600 chr7A 97.959 49 1 0 547 595 28463608 28463656 8.430000e-13 86.1
23 TraesCS7D01G053600 chr3B 89.717 671 37 20 1215 1877 661576363 661575717 0.000000e+00 828.0
24 TraesCS7D01G053600 chr3B 89.048 210 18 3 2592 2801 826146441 826146237 6.070000e-64 255.0
25 TraesCS7D01G053600 chr2B 89.717 671 37 20 1215 1877 513259217 513259863 0.000000e+00 828.0
26 TraesCS7D01G053600 chr2B 89.270 671 40 19 1215 1877 363610083 363610729 0.000000e+00 811.0
27 TraesCS7D01G053600 chr2B 89.121 671 40 20 1215 1877 543303355 543302710 0.000000e+00 804.0
28 TraesCS7D01G053600 chr2B 88.532 218 23 1 4283 4500 18106450 18106665 3.630000e-66 263.0
29 TraesCS7D01G053600 chr6D 87.957 656 47 20 1215 1862 192609563 192610194 0.000000e+00 745.0
30 TraesCS7D01G053600 chr1A 86.888 633 51 22 1215 1838 269757123 269757732 0.000000e+00 680.0
31 TraesCS7D01G053600 chr4B 94.037 436 26 0 2531 2966 27405156 27405591 0.000000e+00 662.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G053600 chr7D 28045472 28050197 4725 False 8728.000000 8728 100.000000 1 4726 1 chr7D.!!$F2 4725
1 TraesCS7D01G053600 chr7D 27421945 27422598 653 False 822.000000 822 89.513000 1215 1877 1 chr7D.!!$F1 662
2 TraesCS7D01G053600 chr7D 28059843 28060437 594 False 538.000000 538 84.065000 4151 4726 1 chr7D.!!$F3 575
3 TraesCS7D01G053600 chr4A 701883578 701891676 8098 False 1043.620000 4344 84.434600 330 4726 5 chr4A.!!$F4 4396
4 TraesCS7D01G053600 chr4A 701935884 701937954 2070 False 203.000000 219 87.109500 4543 4726 2 chr4A.!!$F6 183
5 TraesCS7D01G053600 chr7A 28463608 28466830 3222 False 1481.366667 3925 91.578667 547 3885 3 chr7A.!!$F3 3338
6 TraesCS7D01G053600 chr7A 108492554 108493182 628 True 737.000000 737 87.902000 1215 1857 1 chr7A.!!$R1 642
7 TraesCS7D01G053600 chr7A 28471228 28473132 1904 False 262.000000 355 82.600500 4226 4726 2 chr7A.!!$F4 500
8 TraesCS7D01G053600 chr3B 661575717 661576363 646 True 828.000000 828 89.717000 1215 1877 1 chr3B.!!$R1 662
9 TraesCS7D01G053600 chr2B 513259217 513259863 646 False 828.000000 828 89.717000 1215 1877 1 chr2B.!!$F3 662
10 TraesCS7D01G053600 chr2B 363610083 363610729 646 False 811.000000 811 89.270000 1215 1877 1 chr2B.!!$F2 662
11 TraesCS7D01G053600 chr2B 543302710 543303355 645 True 804.000000 804 89.121000 1215 1877 1 chr2B.!!$R1 662
12 TraesCS7D01G053600 chr6D 192609563 192610194 631 False 745.000000 745 87.957000 1215 1862 1 chr6D.!!$F1 647
13 TraesCS7D01G053600 chr1A 269757123 269757732 609 False 680.000000 680 86.888000 1215 1838 1 chr1A.!!$F1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 327 0.108138 ACTCGCCATTACTGTCTGCC 60.108 55.000 0.0 0.0 0.0 4.85 F
973 1021 0.112412 ACAAGAACCCATCCACCCAC 59.888 55.000 0.0 0.0 0.0 4.61 F
1906 2034 0.105453 AGGAGGCGGTGGATGAGTAT 60.105 55.000 0.0 0.0 0.0 2.12 F
2653 2781 1.734465 GACTTCGACATCAAGCAAGGG 59.266 52.381 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1429 1523 0.459489 GCTCGAGCTTCAGTGAGGAT 59.541 55.000 29.88 0.0 38.21 3.24 R
2027 2155 2.443016 CACCTCCTCCTCCTCCCG 60.443 72.222 0.00 0.0 0.00 5.14 R
2743 2871 2.746359 GTGTCCTGCAGCTCCTGT 59.254 61.111 8.66 0.0 33.43 4.00 R
4534 8774 0.472044 TGTGAGCACTAAGGCCACAA 59.528 50.000 5.01 0.0 39.94 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.615849 GCGAAATCCTATTTGCCTCTG 57.384 47.619 0.00 0.00 34.26 3.35
26 27 2.287248 GCGAAATCCTATTTGCCTCTGC 60.287 50.000 0.00 0.00 34.26 4.26
28 29 4.380531 CGAAATCCTATTTGCCTCTGCTA 58.619 43.478 0.00 0.00 38.71 3.49
29 30 4.999950 CGAAATCCTATTTGCCTCTGCTAT 59.000 41.667 0.00 0.00 38.71 2.97
30 31 6.166279 CGAAATCCTATTTGCCTCTGCTATA 58.834 40.000 0.00 0.00 38.71 1.31
31 32 6.312426 CGAAATCCTATTTGCCTCTGCTATAG 59.688 42.308 0.00 0.00 38.71 1.31
34 35 6.591750 TCCTATTTGCCTCTGCTATAGTAC 57.408 41.667 0.84 0.00 38.71 2.73
35 36 6.315714 TCCTATTTGCCTCTGCTATAGTACT 58.684 40.000 0.00 0.00 38.71 2.73
36 37 6.434652 TCCTATTTGCCTCTGCTATAGTACTC 59.565 42.308 0.00 0.00 38.71 2.59
37 38 6.435904 CCTATTTGCCTCTGCTATAGTACTCT 59.564 42.308 0.00 0.00 38.71 3.24
38 39 5.776173 TTTGCCTCTGCTATAGTACTCTC 57.224 43.478 0.00 0.00 38.71 3.20
39 40 3.757270 TGCCTCTGCTATAGTACTCTCC 58.243 50.000 0.00 0.00 38.71 3.71
43 44 4.764823 CCTCTGCTATAGTACTCTCCCTTG 59.235 50.000 0.00 0.00 0.00 3.61
45 46 3.891977 CTGCTATAGTACTCTCCCTTGCA 59.108 47.826 0.00 1.35 0.00 4.08
46 47 3.637229 TGCTATAGTACTCTCCCTTGCAC 59.363 47.826 0.00 0.00 0.00 4.57
47 48 3.637229 GCTATAGTACTCTCCCTTGCACA 59.363 47.826 0.00 0.00 0.00 4.57
49 50 5.395324 GCTATAGTACTCTCCCTTGCACAAA 60.395 44.000 0.00 0.00 0.00 2.83
50 51 3.857157 AGTACTCTCCCTTGCACAAAA 57.143 42.857 0.00 0.00 0.00 2.44
51 52 4.373156 AGTACTCTCCCTTGCACAAAAT 57.627 40.909 0.00 0.00 0.00 1.82
52 53 5.499004 AGTACTCTCCCTTGCACAAAATA 57.501 39.130 0.00 0.00 0.00 1.40
53 54 5.876357 AGTACTCTCCCTTGCACAAAATAA 58.124 37.500 0.00 0.00 0.00 1.40
54 55 6.303839 AGTACTCTCCCTTGCACAAAATAAA 58.696 36.000 0.00 0.00 0.00 1.40
58 59 6.024552 TCTCCCTTGCACAAAATAAATGTC 57.975 37.500 0.00 0.00 0.00 3.06
61 62 4.987912 CCCTTGCACAAAATAAATGTCGTT 59.012 37.500 0.00 0.00 0.00 3.85
62 63 5.107530 CCCTTGCACAAAATAAATGTCGTTG 60.108 40.000 0.00 0.00 0.00 4.10
63 64 5.107530 CCTTGCACAAAATAAATGTCGTTGG 60.108 40.000 0.00 0.00 0.00 3.77
64 65 4.938080 TGCACAAAATAAATGTCGTTGGT 58.062 34.783 0.00 0.00 0.00 3.67
67 68 6.978659 TGCACAAAATAAATGTCGTTGGTTTA 59.021 30.769 0.00 0.00 0.00 2.01
70 71 9.666626 CACAAAATAAATGTCGTTGGTTTAGTA 57.333 29.630 0.00 0.00 0.00 1.82
77 78 7.966246 AATGTCGTTGGTTTAGTATAACACA 57.034 32.000 0.00 0.00 0.00 3.72
78 79 7.966246 ATGTCGTTGGTTTAGTATAACACAA 57.034 32.000 0.00 0.00 0.00 3.33
79 80 7.410800 TGTCGTTGGTTTAGTATAACACAAG 57.589 36.000 0.00 0.00 0.00 3.16
80 81 6.985645 TGTCGTTGGTTTAGTATAACACAAGT 59.014 34.615 0.00 0.00 0.00 3.16
83 84 9.539825 TCGTTGGTTTAGTATAACACAAGTTTA 57.460 29.630 0.00 0.00 39.15 2.01
84 85 9.801714 CGTTGGTTTAGTATAACACAAGTTTAG 57.198 33.333 0.00 0.00 39.15 1.85
92 93 8.236084 AGTATAACACAAGTTTAGTTACAGCG 57.764 34.615 0.36 0.00 39.15 5.18
94 95 5.399604 AACACAAGTTTAGTTACAGCGAC 57.600 39.130 0.00 0.00 33.11 5.19
95 96 4.435425 ACACAAGTTTAGTTACAGCGACA 58.565 39.130 0.00 0.00 0.00 4.35
96 97 4.269363 ACACAAGTTTAGTTACAGCGACAC 59.731 41.667 0.00 0.00 0.00 3.67
97 98 4.506654 CACAAGTTTAGTTACAGCGACACT 59.493 41.667 0.00 0.00 0.00 3.55
98 99 5.006358 CACAAGTTTAGTTACAGCGACACTT 59.994 40.000 0.00 0.00 0.00 3.16
101 102 7.278424 ACAAGTTTAGTTACAGCGACACTTAAA 59.722 33.333 0.00 0.00 0.00 1.52
102 103 7.958053 AGTTTAGTTACAGCGACACTTAAAT 57.042 32.000 0.00 0.00 0.00 1.40
103 104 7.793902 AGTTTAGTTACAGCGACACTTAAATG 58.206 34.615 0.00 0.00 0.00 2.32
104 105 7.440255 AGTTTAGTTACAGCGACACTTAAATGT 59.560 33.333 0.00 0.00 34.78 2.71
105 106 5.591643 AGTTACAGCGACACTTAAATGTG 57.408 39.130 0.00 0.00 43.07 3.21
106 107 4.451096 AGTTACAGCGACACTTAAATGTGG 59.549 41.667 0.00 0.00 41.84 4.17
108 109 3.674997 ACAGCGACACTTAAATGTGGAT 58.325 40.909 3.10 0.00 41.84 3.41
109 110 3.436704 ACAGCGACACTTAAATGTGGATG 59.563 43.478 14.36 14.36 46.34 3.51
110 111 3.436704 CAGCGACACTTAAATGTGGATGT 59.563 43.478 8.82 0.00 39.14 3.06
112 113 3.684788 GCGACACTTAAATGTGGATGTCT 59.315 43.478 3.10 0.00 41.84 3.41
113 114 4.201724 GCGACACTTAAATGTGGATGTCTC 60.202 45.833 3.10 0.00 41.84 3.36
115 116 5.062683 CGACACTTAAATGTGGATGTCTCTG 59.937 44.000 0.00 0.00 41.84 3.35
116 117 6.114187 ACACTTAAATGTGGATGTCTCTGA 57.886 37.500 0.00 0.00 41.84 3.27
117 118 6.533730 ACACTTAAATGTGGATGTCTCTGAA 58.466 36.000 0.00 0.00 41.84 3.02
118 119 7.170965 ACACTTAAATGTGGATGTCTCTGAAT 58.829 34.615 0.00 0.00 41.84 2.57
120 121 9.166173 CACTTAAATGTGGATGTCTCTGAATAA 57.834 33.333 0.00 0.00 34.56 1.40
121 122 9.388506 ACTTAAATGTGGATGTCTCTGAATAAG 57.611 33.333 0.00 0.00 0.00 1.73
122 123 6.690194 AAATGTGGATGTCTCTGAATAAGC 57.310 37.500 0.00 0.00 0.00 3.09
123 124 4.824479 TGTGGATGTCTCTGAATAAGCA 57.176 40.909 0.00 0.00 0.00 3.91
125 126 3.553511 GTGGATGTCTCTGAATAAGCACG 59.446 47.826 0.00 0.00 0.00 5.34
126 127 2.541762 GGATGTCTCTGAATAAGCACGC 59.458 50.000 0.00 0.00 0.00 5.34
127 128 3.452474 GATGTCTCTGAATAAGCACGCT 58.548 45.455 0.00 0.00 0.00 5.07
128 129 4.499865 GGATGTCTCTGAATAAGCACGCTA 60.500 45.833 0.00 0.00 0.00 4.26
129 130 3.770666 TGTCTCTGAATAAGCACGCTAC 58.229 45.455 0.00 0.00 0.00 3.58
132 133 5.299531 TGTCTCTGAATAAGCACGCTACTAT 59.700 40.000 0.00 0.00 0.00 2.12
133 134 5.627367 GTCTCTGAATAAGCACGCTACTATG 59.373 44.000 0.00 0.00 0.00 2.23
134 135 5.299531 TCTCTGAATAAGCACGCTACTATGT 59.700 40.000 0.00 0.00 0.00 2.29
135 136 6.485648 TCTCTGAATAAGCACGCTACTATGTA 59.514 38.462 0.00 0.00 0.00 2.29
137 138 5.220381 TGAATAAGCACGCTACTATGTAGC 58.780 41.667 16.95 16.95 37.21 3.58
138 139 4.848562 ATAAGCACGCTACTATGTAGCA 57.151 40.909 23.68 8.50 40.39 3.49
139 140 2.493713 AGCACGCTACTATGTAGCAC 57.506 50.000 23.68 14.81 40.39 4.40
141 142 2.033550 AGCACGCTACTATGTAGCACTC 59.966 50.000 23.68 13.86 40.39 3.51
142 143 2.859032 GCACGCTACTATGTAGCACTCC 60.859 54.545 23.68 9.50 40.39 3.85
143 144 1.955080 ACGCTACTATGTAGCACTCCC 59.045 52.381 23.68 0.74 40.39 4.30
146 147 3.068307 CGCTACTATGTAGCACTCCCTTT 59.932 47.826 23.68 0.00 40.39 3.11
148 149 5.047943 CGCTACTATGTAGCACTCCCTTTAT 60.048 44.000 23.68 0.00 40.39 1.40
149 150 6.150641 CGCTACTATGTAGCACTCCCTTTATA 59.849 42.308 23.68 0.00 40.39 0.98
150 151 7.309012 CGCTACTATGTAGCACTCCCTTTATAA 60.309 40.741 23.68 0.00 40.39 0.98
151 152 8.365647 GCTACTATGTAGCACTCCCTTTATAAA 58.634 37.037 20.63 0.00 40.14 1.40
152 153 9.915629 CTACTATGTAGCACTCCCTTTATAAAG 57.084 37.037 16.90 16.90 35.79 1.85
154 155 8.989131 ACTATGTAGCACTCCCTTTATAAAGAA 58.011 33.333 23.95 12.04 38.28 2.52
155 156 9.832445 CTATGTAGCACTCCCTTTATAAAGAAA 57.168 33.333 23.95 11.73 38.28 2.52
157 158 8.506168 TGTAGCACTCCCTTTATAAAGAAATG 57.494 34.615 23.95 16.61 38.28 2.32
159 160 9.609346 GTAGCACTCCCTTTATAAAGAAATGTA 57.391 33.333 23.95 6.29 38.28 2.29
161 162 9.125026 AGCACTCCCTTTATAAAGAAATGTATG 57.875 33.333 23.95 13.68 38.28 2.39
162 163 8.903820 GCACTCCCTTTATAAAGAAATGTATGT 58.096 33.333 23.95 9.61 38.28 2.29
175 176 8.997621 AAGAAATGTATGTAAGAGCGTTTAGA 57.002 30.769 0.00 0.00 0.00 2.10
176 177 9.601217 AAGAAATGTATGTAAGAGCGTTTAGAT 57.399 29.630 0.00 0.18 0.00 1.98
177 178 9.601217 AGAAATGTATGTAAGAGCGTTTAGATT 57.399 29.630 0.00 0.00 0.00 2.40
178 179 9.638300 GAAATGTATGTAAGAGCGTTTAGATTG 57.362 33.333 0.00 0.00 0.00 2.67
179 180 6.583912 TGTATGTAAGAGCGTTTAGATTGC 57.416 37.500 0.00 0.00 0.00 3.56
180 181 6.338146 TGTATGTAAGAGCGTTTAGATTGCT 58.662 36.000 0.00 0.00 42.73 3.91
181 182 7.485810 TGTATGTAAGAGCGTTTAGATTGCTA 58.514 34.615 0.00 0.00 39.49 3.49
182 183 7.977293 TGTATGTAAGAGCGTTTAGATTGCTAA 59.023 33.333 0.00 0.00 39.49 3.09
184 185 7.843490 TGTAAGAGCGTTTAGATTGCTAATT 57.157 32.000 0.00 0.00 39.49 1.40
186 187 8.175069 TGTAAGAGCGTTTAGATTGCTAATTTG 58.825 33.333 0.00 0.00 39.49 2.32
189 190 7.685594 AGAGCGTTTAGATTGCTAATTTGTAC 58.314 34.615 0.00 0.00 39.49 2.90
190 191 7.549488 AGAGCGTTTAGATTGCTAATTTGTACT 59.451 33.333 0.00 0.00 39.49 2.73
191 192 8.712285 AGCGTTTAGATTGCTAATTTGTACTA 57.288 30.769 0.00 0.00 37.15 1.82
192 193 8.601476 AGCGTTTAGATTGCTAATTTGTACTAC 58.399 33.333 0.00 0.00 37.15 2.73
193 194 8.385111 GCGTTTAGATTGCTAATTTGTACTACA 58.615 33.333 0.00 0.00 36.54 2.74
202 203 9.515226 TTGCTAATTTGTACTACAAGATTTCCT 57.485 29.630 1.95 0.00 39.53 3.36
203 204 9.162764 TGCTAATTTGTACTACAAGATTTCCTC 57.837 33.333 1.95 0.00 39.53 3.71
209 210 6.395629 TGTACTACAAGATTTCCTCTTTCCG 58.604 40.000 0.00 0.00 41.60 4.30
210 211 5.485209 ACTACAAGATTTCCTCTTTCCGT 57.515 39.130 0.00 0.00 41.60 4.69
214 215 4.757149 ACAAGATTTCCTCTTTCCGTTGAG 59.243 41.667 0.00 0.00 41.60 3.02
215 216 3.339141 AGATTTCCTCTTTCCGTTGAGC 58.661 45.455 0.00 0.00 0.00 4.26
216 217 1.508632 TTTCCTCTTTCCGTTGAGCG 58.491 50.000 0.00 0.00 40.95 5.03
218 219 0.319555 TCCTCTTTCCGTTGAGCGTG 60.320 55.000 0.00 0.00 39.32 5.34
219 220 1.291877 CCTCTTTCCGTTGAGCGTGG 61.292 60.000 0.00 0.00 39.32 4.94
220 221 0.319555 CTCTTTCCGTTGAGCGTGGA 60.320 55.000 0.00 0.00 39.32 4.02
221 222 0.319555 TCTTTCCGTTGAGCGTGGAG 60.320 55.000 0.00 0.00 39.32 3.86
223 224 1.750341 TTTCCGTTGAGCGTGGAGGA 61.750 55.000 0.00 0.00 39.32 3.71
224 225 1.750341 TTCCGTTGAGCGTGGAGGAA 61.750 55.000 2.65 2.65 39.32 3.36
225 226 1.301401 CCGTTGAGCGTGGAGGAAA 60.301 57.895 0.00 0.00 39.32 3.13
226 227 1.566018 CCGTTGAGCGTGGAGGAAAC 61.566 60.000 0.00 0.00 39.32 2.78
227 228 0.878523 CGTTGAGCGTGGAGGAAACA 60.879 55.000 0.00 0.00 35.54 2.83
228 229 0.868406 GTTGAGCGTGGAGGAAACAG 59.132 55.000 0.00 0.00 0.00 3.16
230 231 1.376037 GAGCGTGGAGGAAACAGGG 60.376 63.158 0.00 0.00 0.00 4.45
232 233 2.359975 CGTGGAGGAAACAGGGCC 60.360 66.667 0.00 0.00 0.00 5.80
233 234 2.843545 GTGGAGGAAACAGGGCCA 59.156 61.111 6.18 0.00 0.00 5.36
234 235 1.384191 GTGGAGGAAACAGGGCCAT 59.616 57.895 6.18 0.00 0.00 4.40
235 236 0.967380 GTGGAGGAAACAGGGCCATG 60.967 60.000 17.55 17.55 0.00 3.66
237 238 2.037847 AGGAAACAGGGCCATGGC 59.962 61.111 29.47 29.47 41.06 4.40
248 249 3.055719 CCATGGCCGGACACACAC 61.056 66.667 15.41 0.00 0.00 3.82
249 250 3.422303 CATGGCCGGACACACACG 61.422 66.667 15.41 0.00 0.00 4.49
268 269 4.814294 GCCGTCCGTACAGCCCAG 62.814 72.222 0.00 0.00 0.00 4.45
269 270 4.814294 CCGTCCGTACAGCCCAGC 62.814 72.222 0.00 0.00 0.00 4.85
298 299 4.969196 CCACCGTGCACTCGCTGT 62.969 66.667 16.19 1.24 39.64 4.40
300 301 2.049433 ACCGTGCACTCGCTGTAC 60.049 61.111 16.19 0.00 39.64 2.90
301 302 2.258591 CCGTGCACTCGCTGTACT 59.741 61.111 16.19 0.00 39.64 2.73
302 303 1.239296 ACCGTGCACTCGCTGTACTA 61.239 55.000 16.19 0.00 39.64 1.82
303 304 0.797249 CCGTGCACTCGCTGTACTAC 60.797 60.000 16.19 0.00 39.64 2.73
304 305 0.797249 CGTGCACTCGCTGTACTACC 60.797 60.000 16.19 0.00 39.64 3.18
305 306 0.458025 GTGCACTCGCTGTACTACCC 60.458 60.000 10.32 0.00 39.64 3.69
307 308 0.245539 GCACTCGCTGTACTACCCAA 59.754 55.000 0.00 0.00 34.30 4.12
308 309 1.992170 CACTCGCTGTACTACCCAAC 58.008 55.000 0.00 0.00 0.00 3.77
310 311 1.817447 ACTCGCTGTACTACCCAACTC 59.183 52.381 0.00 0.00 0.00 3.01
311 312 0.806868 TCGCTGTACTACCCAACTCG 59.193 55.000 0.00 0.00 0.00 4.18
312 313 0.801067 CGCTGTACTACCCAACTCGC 60.801 60.000 0.00 0.00 0.00 5.03
313 314 0.459759 GCTGTACTACCCAACTCGCC 60.460 60.000 0.00 0.00 0.00 5.54
315 316 1.480954 CTGTACTACCCAACTCGCCAT 59.519 52.381 0.00 0.00 0.00 4.40
316 317 1.903860 TGTACTACCCAACTCGCCATT 59.096 47.619 0.00 0.00 0.00 3.16
318 319 2.685850 ACTACCCAACTCGCCATTAC 57.314 50.000 0.00 0.00 0.00 1.89
319 320 2.185387 ACTACCCAACTCGCCATTACT 58.815 47.619 0.00 0.00 0.00 2.24
320 321 2.093658 ACTACCCAACTCGCCATTACTG 60.094 50.000 0.00 0.00 0.00 2.74
321 322 0.690762 ACCCAACTCGCCATTACTGT 59.309 50.000 0.00 0.00 0.00 3.55
323 324 1.066143 CCCAACTCGCCATTACTGTCT 60.066 52.381 0.00 0.00 0.00 3.41
324 325 2.002586 CCAACTCGCCATTACTGTCTG 58.997 52.381 0.00 0.00 0.00 3.51
325 326 1.394917 CAACTCGCCATTACTGTCTGC 59.605 52.381 0.00 0.00 0.00 4.26
326 327 0.108138 ACTCGCCATTACTGTCTGCC 60.108 55.000 0.00 0.00 0.00 4.85
327 328 0.811616 CTCGCCATTACTGTCTGCCC 60.812 60.000 0.00 0.00 0.00 5.36
328 329 1.078497 CGCCATTACTGTCTGCCCA 60.078 57.895 0.00 0.00 0.00 5.36
340 341 0.179094 TCTGCCCAACGTATTAGCCG 60.179 55.000 0.00 0.00 0.00 5.52
364 365 4.032786 GCCATTGGCGTATTTTGTCATTTC 59.967 41.667 12.82 0.00 39.62 2.17
372 373 0.236187 TTTTGTCATTTCCGCCGACG 59.764 50.000 0.00 0.00 39.67 5.12
374 375 1.286354 TTGTCATTTCCGCCGACGAC 61.286 55.000 0.00 0.00 43.93 4.34
375 376 2.505337 TCATTTCCGCCGACGACG 60.505 61.111 0.00 0.00 43.93 5.12
386 387 4.760047 GACGACGGTGGCAGCCAT 62.760 66.667 19.75 0.11 35.28 4.40
387 388 4.760047 ACGACGGTGGCAGCCATC 62.760 66.667 19.75 17.61 35.28 3.51
388 389 4.457496 CGACGGTGGCAGCCATCT 62.457 66.667 22.86 9.66 35.28 2.90
389 390 2.045926 GACGGTGGCAGCCATCTT 60.046 61.111 22.86 13.94 35.28 2.40
391 392 2.825836 CGGTGGCAGCCATCTTCC 60.826 66.667 22.86 15.38 35.28 3.46
393 394 1.000396 GGTGGCAGCCATCTTCCTT 60.000 57.895 19.75 0.00 35.28 3.36
394 395 1.318158 GGTGGCAGCCATCTTCCTTG 61.318 60.000 19.75 0.00 35.28 3.61
395 396 1.000521 TGGCAGCCATCTTCCTTGG 60.001 57.895 11.22 0.00 37.31 3.61
396 397 1.304282 GGCAGCCATCTTCCTTGGA 59.696 57.895 6.55 0.00 36.26 3.53
398 399 1.034292 GCAGCCATCTTCCTTGGACC 61.034 60.000 0.00 0.00 36.26 4.46
399 400 0.329261 CAGCCATCTTCCTTGGACCA 59.671 55.000 0.00 0.00 36.26 4.02
404 405 2.363683 CATCTTCCTTGGACCAGAAGC 58.636 52.381 15.51 0.00 37.51 3.86
446 447 2.434185 CTACATGGCGCCACACGT 60.434 61.111 35.50 29.47 46.11 4.49
467 468 2.281276 GGCGACCCCGTCAACTTT 60.281 61.111 0.00 0.00 40.69 2.66
470 471 1.670083 CGACCCCGTCAACTTTCCC 60.670 63.158 0.00 0.00 32.09 3.97
474 475 2.356553 CCGTCAACTTTCCCGCGA 60.357 61.111 8.23 0.00 0.00 5.87
475 476 2.664436 CCGTCAACTTTCCCGCGAC 61.664 63.158 8.23 0.00 0.00 5.19
476 477 2.851104 GTCAACTTTCCCGCGACG 59.149 61.111 8.23 0.00 0.00 5.12
477 478 3.039588 TCAACTTTCCCGCGACGC 61.040 61.111 8.23 10.49 0.00 5.19
478 479 3.342627 CAACTTTCCCGCGACGCA 61.343 61.111 21.35 0.00 0.00 5.24
479 480 2.589442 AACTTTCCCGCGACGCAA 60.589 55.556 21.35 3.56 0.00 4.85
481 482 3.788766 CTTTCCCGCGACGCAAGG 61.789 66.667 21.35 19.26 46.39 3.61
606 621 4.742201 CGGGCCAGGTCACGTGAG 62.742 72.222 20.73 8.44 0.00 3.51
691 706 2.124695 GCAACGGTCAGATCCCCC 60.125 66.667 0.00 0.00 0.00 5.40
856 902 3.241530 TGAGAGCCAGCCACCGTT 61.242 61.111 0.00 0.00 0.00 4.44
858 904 1.448013 GAGAGCCAGCCACCGTTAC 60.448 63.158 0.00 0.00 0.00 2.50
874 920 3.340034 CGTTACAGAGAGTGAGGAGAGT 58.660 50.000 0.00 0.00 0.00 3.24
891 937 4.700213 GGAGAGTGATAGGATAGTGAGAGC 59.300 50.000 0.00 0.00 0.00 4.09
895 941 5.700183 AGTGATAGGATAGTGAGAGCTTGA 58.300 41.667 0.00 0.00 0.00 3.02
899 945 3.565307 AGGATAGTGAGAGCTTGAGAGG 58.435 50.000 0.00 0.00 0.00 3.69
973 1021 0.112412 ACAAGAACCCATCCACCCAC 59.888 55.000 0.00 0.00 0.00 4.61
978 1026 4.447342 CCCATCCACCCACCCAGC 62.447 72.222 0.00 0.00 0.00 4.85
985 1033 1.984026 CACCCACCCAGCCAAATCC 60.984 63.158 0.00 0.00 0.00 3.01
986 1034 2.364186 CCCACCCAGCCAAATCCC 60.364 66.667 0.00 0.00 0.00 3.85
987 1035 2.364186 CCACCCAGCCAAATCCCC 60.364 66.667 0.00 0.00 0.00 4.81
989 1037 1.984026 CACCCAGCCAAATCCCCAC 60.984 63.158 0.00 0.00 0.00 4.61
992 1040 3.451894 CAGCCAAATCCCCACCGC 61.452 66.667 0.00 0.00 0.00 5.68
993 1041 3.978193 AGCCAAATCCCCACCGCA 61.978 61.111 0.00 0.00 0.00 5.69
995 1043 2.785425 GCCAAATCCCCACCGCATC 61.785 63.158 0.00 0.00 0.00 3.91
996 1044 2.480610 CCAAATCCCCACCGCATCG 61.481 63.158 0.00 0.00 0.00 3.84
997 1045 2.828549 AAATCCCCACCGCATCGC 60.829 61.111 0.00 0.00 0.00 4.58
998 1046 3.636929 AAATCCCCACCGCATCGCA 62.637 57.895 0.00 0.00 0.00 5.10
999 1047 2.909457 AAATCCCCACCGCATCGCAT 62.909 55.000 0.00 0.00 0.00 4.73
1000 1048 3.832237 ATCCCCACCGCATCGCATC 62.832 63.158 0.00 0.00 0.00 3.91
1002 1050 4.854924 CCCACCGCATCGCATCCA 62.855 66.667 0.00 0.00 0.00 3.41
1003 1051 2.592574 CCACCGCATCGCATCCAT 60.593 61.111 0.00 0.00 0.00 3.41
1157 1225 2.768492 GCCCGGCAGCTTCTGATTG 61.768 63.158 3.91 0.00 32.44 2.67
1159 1227 1.372087 CCCGGCAGCTTCTGATTGAC 61.372 60.000 0.00 0.00 32.44 3.18
1199 1272 8.304596 CGTAGATGTTATAGGCCATTCTTTCTA 58.695 37.037 5.01 0.16 0.00 2.10
1422 1516 4.659115 GATCCACATTCATCCATCCATCA 58.341 43.478 0.00 0.00 0.00 3.07
1423 1517 4.734843 TCCACATTCATCCATCCATCAT 57.265 40.909 0.00 0.00 0.00 2.45
1424 1518 4.659115 TCCACATTCATCCATCCATCATC 58.341 43.478 0.00 0.00 0.00 2.92
1426 1520 4.403734 CACATTCATCCATCCATCATCCA 58.596 43.478 0.00 0.00 0.00 3.41
1427 1521 5.016831 CACATTCATCCATCCATCATCCAT 58.983 41.667 0.00 0.00 0.00 3.41
1428 1522 5.125578 CACATTCATCCATCCATCATCCATC 59.874 44.000 0.00 0.00 0.00 3.51
1429 1523 5.222254 ACATTCATCCATCCATCATCCATCA 60.222 40.000 0.00 0.00 0.00 3.07
1473 1581 3.102972 AGCCACACACATATCAGAGAGT 58.897 45.455 0.00 0.00 0.00 3.24
1476 1584 4.428209 CCACACACATATCAGAGAGTGAC 58.572 47.826 0.00 0.00 38.28 3.67
1488 1598 1.810151 GAGAGTGACTTGAGAGCGAGT 59.190 52.381 0.00 0.00 41.53 4.18
1525 1635 4.392940 CAAAGCAGAGGAGGAAGAAGAAA 58.607 43.478 0.00 0.00 0.00 2.52
1526 1636 3.979101 AGCAGAGGAGGAAGAAGAAAG 57.021 47.619 0.00 0.00 0.00 2.62
1527 1637 3.247162 AGCAGAGGAGGAAGAAGAAAGT 58.753 45.455 0.00 0.00 0.00 2.66
1528 1638 3.650461 AGCAGAGGAGGAAGAAGAAAGTT 59.350 43.478 0.00 0.00 0.00 2.66
1529 1639 4.000325 GCAGAGGAGGAAGAAGAAAGTTC 59.000 47.826 0.00 0.00 0.00 3.01
1531 1641 5.237048 CAGAGGAGGAAGAAGAAAGTTCAG 58.763 45.833 0.00 0.00 0.00 3.02
1540 1650 4.746466 AGAAGAAAGTTCAGAGGAGGAGA 58.254 43.478 0.00 0.00 0.00 3.71
1900 2028 2.444895 GAGGAGGAGGCGGTGGAT 60.445 66.667 0.00 0.00 0.00 3.41
1906 2034 0.105453 AGGAGGCGGTGGATGAGTAT 60.105 55.000 0.00 0.00 0.00 2.12
2173 2301 4.052229 AAGTCGCCGTCCCACTCG 62.052 66.667 0.00 0.00 0.00 4.18
2653 2781 1.734465 GACTTCGACATCAAGCAAGGG 59.266 52.381 0.00 0.00 0.00 3.95
3388 3516 3.066814 ACCCCGCTCTACACCGTC 61.067 66.667 0.00 0.00 0.00 4.79
3787 3935 0.324285 AGAAGAAGCAGCAGGGACAG 59.676 55.000 0.00 0.00 0.00 3.51
3800 3948 3.614092 CAGGGACAGTTCACAGCATTAT 58.386 45.455 0.00 0.00 0.00 1.28
3801 3949 4.012374 CAGGGACAGTTCACAGCATTATT 58.988 43.478 0.00 0.00 0.00 1.40
3802 3950 5.185454 CAGGGACAGTTCACAGCATTATTA 58.815 41.667 0.00 0.00 0.00 0.98
3803 3951 5.647658 CAGGGACAGTTCACAGCATTATTAA 59.352 40.000 0.00 0.00 0.00 1.40
3804 3952 6.319658 CAGGGACAGTTCACAGCATTATTAAT 59.680 38.462 0.00 0.00 0.00 1.40
3805 3953 7.498900 CAGGGACAGTTCACAGCATTATTAATA 59.501 37.037 0.00 0.00 0.00 0.98
3806 3954 7.499232 AGGGACAGTTCACAGCATTATTAATAC 59.501 37.037 0.00 0.00 0.00 1.89
3807 3955 7.282224 GGGACAGTTCACAGCATTATTAATACA 59.718 37.037 0.00 0.00 0.00 2.29
3808 3956 8.840321 GGACAGTTCACAGCATTATTAATACAT 58.160 33.333 0.00 0.00 0.00 2.29
3837 3985 6.632909 TCCATTACATTCTTTTCAGCCATTG 58.367 36.000 0.00 0.00 0.00 2.82
3840 3988 8.034215 CCATTACATTCTTTTCAGCCATTGTAA 58.966 33.333 0.00 0.00 0.00 2.41
3841 3989 8.863049 CATTACATTCTTTTCAGCCATTGTAAC 58.137 33.333 0.00 0.00 0.00 2.50
3842 3990 5.783111 ACATTCTTTTCAGCCATTGTAACC 58.217 37.500 0.00 0.00 0.00 2.85
3843 3991 5.539955 ACATTCTTTTCAGCCATTGTAACCT 59.460 36.000 0.00 0.00 0.00 3.50
3844 3992 6.041979 ACATTCTTTTCAGCCATTGTAACCTT 59.958 34.615 0.00 0.00 0.00 3.50
3845 3993 6.478512 TTCTTTTCAGCCATTGTAACCTTT 57.521 33.333 0.00 0.00 0.00 3.11
3846 3994 5.841810 TCTTTTCAGCCATTGTAACCTTTG 58.158 37.500 0.00 0.00 0.00 2.77
3847 3995 5.596361 TCTTTTCAGCCATTGTAACCTTTGA 59.404 36.000 0.00 0.00 0.00 2.69
3848 3996 5.860941 TTTCAGCCATTGTAACCTTTGAA 57.139 34.783 0.00 0.00 0.00 2.69
3852 4006 5.538053 TCAGCCATTGTAACCTTTGAATTGA 59.462 36.000 0.00 0.00 0.00 2.57
3858 4012 7.972277 CCATTGTAACCTTTGAATTGATCAGAG 59.028 37.037 0.00 0.00 39.77 3.35
3862 4016 7.884877 TGTAACCTTTGAATTGATCAGAGTCAT 59.115 33.333 0.00 0.00 38.33 3.06
3881 4035 8.781196 AGAGTCATAAATGAAATGGAATCATCG 58.219 33.333 0.00 0.00 38.75 3.84
3898 4052 9.092876 GGAATCATCGATAAGTCTATTTCATCC 57.907 37.037 0.00 0.00 0.00 3.51
3901 4055 8.992835 TCATCGATAAGTCTATTTCATCCATG 57.007 34.615 0.00 0.00 0.00 3.66
3904 4058 7.093354 TCGATAAGTCTATTTCATCCATGCTC 58.907 38.462 0.00 0.00 0.00 4.26
3906 4060 5.378230 AAGTCTATTTCATCCATGCTCCA 57.622 39.130 0.00 0.00 0.00 3.86
3907 4061 5.579753 AGTCTATTTCATCCATGCTCCAT 57.420 39.130 0.00 0.00 0.00 3.41
3908 4062 5.314529 AGTCTATTTCATCCATGCTCCATG 58.685 41.667 0.00 0.00 41.10 3.66
3909 4063 5.068636 GTCTATTTCATCCATGCTCCATGT 58.931 41.667 4.69 0.00 39.94 3.21
3911 4065 4.665833 ATTTCATCCATGCTCCATGTTG 57.334 40.909 4.69 2.78 39.94 3.33
3914 4259 2.097036 CATCCATGCTCCATGTTGTGT 58.903 47.619 4.69 0.00 39.94 3.72
3917 4262 3.281158 TCCATGCTCCATGTTGTGTATG 58.719 45.455 4.69 0.00 39.94 2.39
3920 4265 4.035558 CCATGCTCCATGTTGTGTATGTAC 59.964 45.833 4.69 0.00 39.94 2.90
3930 4275 7.538334 CCATGTTGTGTATGTACAATCTTTGTG 59.462 37.037 0.00 0.00 45.03 3.33
3931 4276 7.793927 TGTTGTGTATGTACAATCTTTGTGA 57.206 32.000 0.00 0.00 45.03 3.58
3937 4282 8.171196 GTGTATGTACAATCTTTGTGACATCTG 58.829 37.037 0.00 0.00 45.03 2.90
3944 4289 7.143340 ACAATCTTTGTGACATCTGAAATGTG 58.857 34.615 0.00 0.00 43.48 3.21
3946 4291 6.698008 TCTTTGTGACATCTGAAATGTGTT 57.302 33.333 0.00 0.00 31.52 3.32
3947 4292 6.728200 TCTTTGTGACATCTGAAATGTGTTC 58.272 36.000 0.00 0.00 31.52 3.18
3948 4293 6.543465 TCTTTGTGACATCTGAAATGTGTTCT 59.457 34.615 0.00 0.00 31.52 3.01
3950 4295 6.063640 TGTGACATCTGAAATGTGTTCTTG 57.936 37.500 0.00 0.00 31.52 3.02
3952 4297 6.138761 GTGACATCTGAAATGTGTTCTTGTC 58.861 40.000 0.00 0.00 31.52 3.18
3954 4299 6.017687 TGACATCTGAAATGTGTTCTTGTCTG 60.018 38.462 0.00 0.00 33.79 3.51
3955 4300 6.057533 ACATCTGAAATGTGTTCTTGTCTGA 58.942 36.000 0.00 0.00 0.00 3.27
3957 4302 7.230108 ACATCTGAAATGTGTTCTTGTCTGAAT 59.770 33.333 0.00 0.00 0.00 2.57
3958 4303 7.572523 TCTGAAATGTGTTCTTGTCTGAATT 57.427 32.000 0.00 0.00 0.00 2.17
3959 4304 7.420002 TCTGAAATGTGTTCTTGTCTGAATTG 58.580 34.615 0.00 0.00 0.00 2.32
3960 4305 7.282901 TCTGAAATGTGTTCTTGTCTGAATTGA 59.717 33.333 0.00 0.00 0.00 2.57
3961 4306 7.944061 TGAAATGTGTTCTTGTCTGAATTGAT 58.056 30.769 0.00 0.00 0.00 2.57
3962 4307 8.415553 TGAAATGTGTTCTTGTCTGAATTGATT 58.584 29.630 0.00 0.00 0.00 2.57
3963 4308 8.583810 AAATGTGTTCTTGTCTGAATTGATTG 57.416 30.769 0.00 0.00 0.00 2.67
3964 4309 6.940831 TGTGTTCTTGTCTGAATTGATTGA 57.059 33.333 0.00 0.00 0.00 2.57
3965 4310 7.332213 TGTGTTCTTGTCTGAATTGATTGAA 57.668 32.000 0.00 0.00 0.00 2.69
3966 4311 7.944061 TGTGTTCTTGTCTGAATTGATTGAAT 58.056 30.769 0.00 0.00 0.00 2.57
3967 4312 8.077991 TGTGTTCTTGTCTGAATTGATTGAATC 58.922 33.333 0.00 0.00 0.00 2.52
3968 4313 7.540055 GTGTTCTTGTCTGAATTGATTGAATCC 59.460 37.037 2.26 0.00 0.00 3.01
3969 4314 6.764308 TCTTGTCTGAATTGATTGAATCCC 57.236 37.500 2.26 0.00 0.00 3.85
3970 4315 6.247676 TCTTGTCTGAATTGATTGAATCCCA 58.752 36.000 2.26 0.00 0.00 4.37
3971 4316 6.893554 TCTTGTCTGAATTGATTGAATCCCAT 59.106 34.615 2.26 0.00 0.00 4.00
3989 4334 3.795623 CATTCCCATGGAGAAAAGCAG 57.204 47.619 15.22 0.00 31.21 4.24
3990 4335 2.978156 TTCCCATGGAGAAAAGCAGT 57.022 45.000 15.22 0.00 31.21 4.40
3991 4336 2.205022 TCCCATGGAGAAAAGCAGTG 57.795 50.000 15.22 0.00 0.00 3.66
3995 4340 3.512724 CCCATGGAGAAAAGCAGTGAATT 59.487 43.478 15.22 0.00 0.00 2.17
4000 4350 4.276678 TGGAGAAAAGCAGTGAATTCTGTG 59.723 41.667 7.05 5.22 37.70 3.66
4013 4363 7.061441 CAGTGAATTCTGTGTGCATAATTGTTC 59.939 37.037 7.05 0.00 33.42 3.18
4024 4374 6.038356 GTGCATAATTGTTCCAGAATTCAGG 58.962 40.000 10.56 10.56 0.00 3.86
4025 4375 5.716228 TGCATAATTGTTCCAGAATTCAGGT 59.284 36.000 15.78 0.00 0.00 4.00
4032 4419 5.551233 TGTTCCAGAATTCAGGTAGAACAG 58.449 41.667 15.78 0.00 39.49 3.16
4033 4420 5.306937 TGTTCCAGAATTCAGGTAGAACAGA 59.693 40.000 15.78 0.00 39.49 3.41
4044 4431 6.013379 TCAGGTAGAACAGATTCAGAGAACT 58.987 40.000 0.00 0.00 37.29 3.01
4045 4432 6.495181 TCAGGTAGAACAGATTCAGAGAACTT 59.505 38.462 0.00 0.00 37.29 2.66
4046 4433 6.811170 CAGGTAGAACAGATTCAGAGAACTTC 59.189 42.308 0.00 0.00 37.29 3.01
4047 4434 6.495181 AGGTAGAACAGATTCAGAGAACTTCA 59.505 38.462 0.00 0.00 37.29 3.02
4048 4435 6.588373 GGTAGAACAGATTCAGAGAACTTCAC 59.412 42.308 0.00 0.00 37.29 3.18
4049 4436 6.418057 AGAACAGATTCAGAGAACTTCACT 57.582 37.500 0.00 0.00 37.29 3.41
4050 4437 6.454795 AGAACAGATTCAGAGAACTTCACTC 58.545 40.000 0.00 0.00 37.29 3.51
4052 4439 6.418057 ACAGATTCAGAGAACTTCACTCTT 57.582 37.500 0.00 0.00 41.94 2.85
4053 4440 6.222389 ACAGATTCAGAGAACTTCACTCTTG 58.778 40.000 0.00 0.00 41.94 3.02
4056 4443 7.869937 CAGATTCAGAGAACTTCACTCTTGTTA 59.130 37.037 0.00 0.00 41.94 2.41
4059 4446 8.594881 TTCAGAGAACTTCACTCTTGTTATTC 57.405 34.615 0.00 0.00 41.94 1.75
4062 4449 8.494347 CAGAGAACTTCACTCTTGTTATTCTTG 58.506 37.037 0.00 0.00 41.94 3.02
4064 4451 8.371770 AGAACTTCACTCTTGTTATTCTTGTC 57.628 34.615 0.00 0.00 0.00 3.18
4066 4453 7.721286 ACTTCACTCTTGTTATTCTTGTCTG 57.279 36.000 0.00 0.00 0.00 3.51
4068 4455 8.421784 ACTTCACTCTTGTTATTCTTGTCTGTA 58.578 33.333 0.00 0.00 0.00 2.74
4069 4456 9.429359 CTTCACTCTTGTTATTCTTGTCTGTAT 57.571 33.333 0.00 0.00 0.00 2.29
4070 4457 8.988064 TCACTCTTGTTATTCTTGTCTGTATC 57.012 34.615 0.00 0.00 0.00 2.24
4071 4458 8.035394 TCACTCTTGTTATTCTTGTCTGTATCC 58.965 37.037 0.00 0.00 0.00 2.59
4073 4460 7.038302 ACTCTTGTTATTCTTGTCTGTATCCCA 60.038 37.037 0.00 0.00 0.00 4.37
4074 4461 7.861629 TCTTGTTATTCTTGTCTGTATCCCAT 58.138 34.615 0.00 0.00 0.00 4.00
4076 4463 5.822519 TGTTATTCTTGTCTGTATCCCATGC 59.177 40.000 0.00 0.00 0.00 4.06
4077 4464 4.785346 ATTCTTGTCTGTATCCCATGCT 57.215 40.909 0.00 0.00 0.00 3.79
4078 4465 3.548745 TCTTGTCTGTATCCCATGCTG 57.451 47.619 0.00 0.00 0.00 4.41
4079 4466 2.840038 TCTTGTCTGTATCCCATGCTGT 59.160 45.455 0.00 0.00 0.00 4.40
4080 4467 3.264193 TCTTGTCTGTATCCCATGCTGTT 59.736 43.478 0.00 0.00 0.00 3.16
4082 4469 3.609853 TGTCTGTATCCCATGCTGTTTC 58.390 45.455 0.00 0.00 0.00 2.78
4083 4470 3.008923 TGTCTGTATCCCATGCTGTTTCA 59.991 43.478 0.00 0.00 0.00 2.69
4084 4471 3.624861 GTCTGTATCCCATGCTGTTTCAG 59.375 47.826 0.00 0.00 34.12 3.02
4086 4473 3.875727 CTGTATCCCATGCTGTTTCAGAG 59.124 47.826 0.66 0.00 32.44 3.35
4087 4474 3.519107 TGTATCCCATGCTGTTTCAGAGA 59.481 43.478 0.66 0.00 32.44 3.10
4088 4475 2.775911 TCCCATGCTGTTTCAGAGAG 57.224 50.000 0.66 0.00 32.44 3.20
4089 4476 2.259917 TCCCATGCTGTTTCAGAGAGA 58.740 47.619 0.66 0.00 32.44 3.10
4090 4477 2.842496 TCCCATGCTGTTTCAGAGAGAT 59.158 45.455 0.66 0.00 32.44 2.75
4091 4478 2.943690 CCCATGCTGTTTCAGAGAGATG 59.056 50.000 0.66 0.00 32.44 2.90
4092 4479 2.943690 CCATGCTGTTTCAGAGAGATGG 59.056 50.000 0.66 0.00 32.44 3.51
4093 4480 3.370209 CCATGCTGTTTCAGAGAGATGGA 60.370 47.826 0.00 0.00 32.38 3.41
4094 4481 3.606595 TGCTGTTTCAGAGAGATGGAG 57.393 47.619 0.66 0.00 32.44 3.86
4095 4482 3.168292 TGCTGTTTCAGAGAGATGGAGA 58.832 45.455 0.66 0.00 32.44 3.71
4096 4483 3.773667 TGCTGTTTCAGAGAGATGGAGAT 59.226 43.478 0.66 0.00 32.44 2.75
4097 4484 4.121317 GCTGTTTCAGAGAGATGGAGATG 58.879 47.826 0.66 0.00 32.44 2.90
4098 4485 4.141981 GCTGTTTCAGAGAGATGGAGATGA 60.142 45.833 0.66 0.00 32.44 2.92
4099 4486 5.336150 TGTTTCAGAGAGATGGAGATGAC 57.664 43.478 0.00 0.00 0.00 3.06
4100 4487 5.022122 TGTTTCAGAGAGATGGAGATGACT 58.978 41.667 0.00 0.00 0.00 3.41
4101 4488 5.105432 TGTTTCAGAGAGATGGAGATGACTG 60.105 44.000 0.00 0.00 0.00 3.51
4102 4489 4.516652 TCAGAGAGATGGAGATGACTGA 57.483 45.455 0.00 0.00 0.00 3.41
4103 4490 4.864726 TCAGAGAGATGGAGATGACTGAA 58.135 43.478 0.00 0.00 31.69 3.02
4104 4491 4.888823 TCAGAGAGATGGAGATGACTGAAG 59.111 45.833 0.00 0.00 31.69 3.02
4127 4514 7.775053 AGAAATTCAGAGAACTCACTCTAGT 57.225 36.000 4.64 0.00 44.18 2.57
4147 4534 8.282455 TCTAGTTCTAGTGAAATGGTAGAGTG 57.718 38.462 6.73 0.00 32.06 3.51
4149 4536 7.164230 AGTTCTAGTGAAATGGTAGAGTGAG 57.836 40.000 0.00 0.00 33.52 3.51
4156 4554 8.083828 AGTGAAATGGTAGAGTGAGATTATGT 57.916 34.615 0.00 0.00 0.00 2.29
4182 4586 7.547019 TCAATCACACTTTGCATTGTTGTAAAA 59.453 29.630 0.00 0.00 37.06 1.52
4183 4587 8.336806 CAATCACACTTTGCATTGTTGTAAAAT 58.663 29.630 0.00 0.00 37.06 1.82
4184 4588 7.840342 TCACACTTTGCATTGTTGTAAAATT 57.160 28.000 0.00 0.00 37.06 1.82
4196 4600 4.211584 TGTTGTAAAATTGCAGCAATGCAG 59.788 37.500 21.56 0.00 46.21 4.41
4208 4612 1.885887 GCAATGCAGGGTACAACTTGA 59.114 47.619 0.00 0.00 0.00 3.02
4224 4629 6.291377 ACAACTTGATCTGAACTAAGCTTCA 58.709 36.000 0.00 0.00 0.00 3.02
4225 4630 6.939163 ACAACTTGATCTGAACTAAGCTTCAT 59.061 34.615 0.00 0.00 29.71 2.57
4226 4631 7.118971 ACAACTTGATCTGAACTAAGCTTCATC 59.881 37.037 0.00 0.22 29.71 2.92
4228 4633 7.164122 ACTTGATCTGAACTAAGCTTCATCAA 58.836 34.615 0.00 2.30 32.27 2.57
4229 4634 7.333921 ACTTGATCTGAACTAAGCTTCATCAAG 59.666 37.037 19.03 19.03 44.23 3.02
4255 6843 4.855388 CAGCGAAATGACAGAATGAAAAGG 59.145 41.667 0.00 0.00 39.69 3.11
4257 6845 3.848019 CGAAATGACAGAATGAAAAGGCG 59.152 43.478 0.00 0.00 39.69 5.52
4264 6856 1.956477 AGAATGAAAAGGCGCACTTGT 59.044 42.857 10.83 5.26 39.96 3.16
4276 6868 2.096218 GCGCACTTGTTCCTTCTGTTAG 60.096 50.000 0.30 0.00 0.00 2.34
4330 8570 6.252995 GGAATATCAATTGGGGCCAATAGTA 58.747 40.000 4.39 0.00 44.86 1.82
4444 8684 6.199342 GCATCTTTAGTTTGTCTCGGAGATAC 59.801 42.308 11.46 9.83 33.89 2.24
4469 8709 8.270744 ACCAGAGCTTGATTTATATGAGAAACT 58.729 33.333 0.00 0.00 0.00 2.66
4502 8742 4.022849 GGATTCAGTGAGGAACAACTTTGG 60.023 45.833 0.00 0.00 0.00 3.28
4527 8767 7.143340 GTGTTGGGGAGTTTAATTAACTGAAC 58.857 38.462 0.00 0.00 47.00 3.18
4528 8768 6.265876 TGTTGGGGAGTTTAATTAACTGAACC 59.734 38.462 0.00 0.00 47.00 3.62
4529 8769 5.954757 TGGGGAGTTTAATTAACTGAACCA 58.045 37.500 0.00 2.16 47.00 3.67
4530 8770 6.374588 TGGGGAGTTTAATTAACTGAACCAA 58.625 36.000 0.00 0.00 47.00 3.67
4534 8774 8.364894 GGGAGTTTAATTAACTGAACCAATTGT 58.635 33.333 4.43 0.00 47.00 2.71
4535 8775 9.758651 GGAGTTTAATTAACTGAACCAATTGTT 57.241 29.630 4.43 0.00 47.00 2.83
4539 8779 8.879342 TTAATTAACTGAACCAATTGTTGTGG 57.121 30.769 4.43 0.00 42.28 4.17
4540 8780 2.888834 ACTGAACCAATTGTTGTGGC 57.111 45.000 4.43 0.00 40.02 5.01
4541 8781 1.412343 ACTGAACCAATTGTTGTGGCC 59.588 47.619 4.43 0.00 40.02 5.36
4542 8782 1.688197 CTGAACCAATTGTTGTGGCCT 59.312 47.619 3.32 0.00 40.02 5.19
4544 8784 3.300388 TGAACCAATTGTTGTGGCCTTA 58.700 40.909 3.32 0.00 40.02 2.69
4545 8785 3.320541 TGAACCAATTGTTGTGGCCTTAG 59.679 43.478 3.32 0.00 40.02 2.18
4682 8980 2.163010 CACCATTCTGAAGCATCACACC 59.837 50.000 0.00 0.00 0.00 4.16
4689 8987 4.086457 TCTGAAGCATCACACCTACTGTA 58.914 43.478 0.00 0.00 0.00 2.74
4704 9002 9.601217 ACACCTACTGTATGATTTATTCAACTC 57.399 33.333 0.00 0.00 38.03 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.096092 AGGCAAATAGGATTTCGCCAAA 58.904 40.909 18.82 0.00 42.10 3.28
2 3 2.687935 GAGGCAAATAGGATTTCGCCAA 59.312 45.455 18.82 0.00 42.10 4.52
5 6 2.287248 GCAGAGGCAAATAGGATTTCGC 60.287 50.000 0.00 0.00 40.72 4.70
7 8 7.164803 ACTATAGCAGAGGCAAATAGGATTTC 58.835 38.462 0.00 0.00 44.61 2.17
8 9 7.084268 ACTATAGCAGAGGCAAATAGGATTT 57.916 36.000 0.00 0.00 44.61 2.17
11 12 6.315714 AGTACTATAGCAGAGGCAAATAGGA 58.684 40.000 0.00 3.31 44.61 2.94
12 13 6.435904 AGAGTACTATAGCAGAGGCAAATAGG 59.564 42.308 0.00 0.00 44.61 2.57
13 14 7.362574 GGAGAGTACTATAGCAGAGGCAAATAG 60.363 44.444 0.00 0.00 44.61 1.73
14 15 6.434652 GGAGAGTACTATAGCAGAGGCAAATA 59.565 42.308 0.00 0.00 44.61 1.40
15 16 5.245075 GGAGAGTACTATAGCAGAGGCAAAT 59.755 44.000 0.00 0.00 44.61 2.32
16 17 4.585162 GGAGAGTACTATAGCAGAGGCAAA 59.415 45.833 0.00 0.00 44.61 3.68
17 18 4.145807 GGAGAGTACTATAGCAGAGGCAA 58.854 47.826 0.00 0.00 44.61 4.52
18 19 3.498841 GGGAGAGTACTATAGCAGAGGCA 60.499 52.174 0.00 0.00 44.61 4.75
19 20 3.086282 GGGAGAGTACTATAGCAGAGGC 58.914 54.545 0.00 0.00 41.61 4.70
20 21 4.650972 AGGGAGAGTACTATAGCAGAGG 57.349 50.000 0.00 0.00 0.00 3.69
21 22 4.217550 GCAAGGGAGAGTACTATAGCAGAG 59.782 50.000 0.00 0.00 0.00 3.35
22 23 4.145807 GCAAGGGAGAGTACTATAGCAGA 58.854 47.826 0.00 0.00 0.00 4.26
23 24 3.891977 TGCAAGGGAGAGTACTATAGCAG 59.108 47.826 0.00 0.00 0.00 4.24
24 25 3.637229 GTGCAAGGGAGAGTACTATAGCA 59.363 47.826 0.00 0.00 0.00 3.49
25 26 3.637229 TGTGCAAGGGAGAGTACTATAGC 59.363 47.826 0.00 0.00 0.00 2.97
26 27 5.854010 TTGTGCAAGGGAGAGTACTATAG 57.146 43.478 0.00 0.00 0.00 1.31
28 29 5.499004 TTTTGTGCAAGGGAGAGTACTAT 57.501 39.130 0.00 0.00 0.00 2.12
29 30 4.967084 TTTTGTGCAAGGGAGAGTACTA 57.033 40.909 0.00 0.00 0.00 1.82
30 31 3.857157 TTTTGTGCAAGGGAGAGTACT 57.143 42.857 0.00 0.00 0.00 2.73
31 32 6.569179 TTTATTTTGTGCAAGGGAGAGTAC 57.431 37.500 0.00 0.00 0.00 2.73
34 35 6.029346 ACATTTATTTTGTGCAAGGGAGAG 57.971 37.500 0.00 0.00 0.00 3.20
35 36 5.335583 CGACATTTATTTTGTGCAAGGGAGA 60.336 40.000 0.00 0.00 0.00 3.71
36 37 4.858692 CGACATTTATTTTGTGCAAGGGAG 59.141 41.667 0.00 0.00 0.00 4.30
37 38 4.279671 ACGACATTTATTTTGTGCAAGGGA 59.720 37.500 0.00 0.00 0.00 4.20
38 39 4.555262 ACGACATTTATTTTGTGCAAGGG 58.445 39.130 0.00 0.00 0.00 3.95
39 40 5.107530 CCAACGACATTTATTTTGTGCAAGG 60.108 40.000 0.00 0.00 0.00 3.61
43 44 5.898630 AACCAACGACATTTATTTTGTGC 57.101 34.783 0.00 0.00 0.00 4.57
51 52 9.486497 TGTGTTATACTAAACCAACGACATTTA 57.514 29.630 0.00 0.00 0.00 1.40
52 53 8.380743 TGTGTTATACTAAACCAACGACATTT 57.619 30.769 0.00 0.00 0.00 2.32
53 54 7.966246 TGTGTTATACTAAACCAACGACATT 57.034 32.000 0.00 0.00 0.00 2.71
54 55 7.658575 ACTTGTGTTATACTAAACCAACGACAT 59.341 33.333 0.00 0.00 0.00 3.06
58 59 9.801714 CTAAACTTGTGTTATACTAAACCAACG 57.198 33.333 0.00 0.00 34.96 4.10
67 68 8.084073 TCGCTGTAACTAAACTTGTGTTATACT 58.916 33.333 0.00 0.00 34.96 2.12
70 71 6.702723 TGTCGCTGTAACTAAACTTGTGTTAT 59.297 34.615 0.00 0.00 34.96 1.89
71 72 6.019640 GTGTCGCTGTAACTAAACTTGTGTTA 60.020 38.462 0.00 0.00 34.96 2.41
72 73 4.871557 TGTCGCTGTAACTAAACTTGTGTT 59.128 37.500 0.00 0.00 38.16 3.32
73 74 4.269363 GTGTCGCTGTAACTAAACTTGTGT 59.731 41.667 0.00 0.00 0.00 3.72
75 76 4.690122 AGTGTCGCTGTAACTAAACTTGT 58.310 39.130 0.00 0.00 0.00 3.16
76 77 5.652744 AAGTGTCGCTGTAACTAAACTTG 57.347 39.130 0.00 0.00 0.00 3.16
77 78 7.775397 TTTAAGTGTCGCTGTAACTAAACTT 57.225 32.000 0.00 0.00 0.00 2.66
78 79 7.440255 ACATTTAAGTGTCGCTGTAACTAAACT 59.560 33.333 0.00 0.00 0.00 2.66
79 80 7.529519 CACATTTAAGTGTCGCTGTAACTAAAC 59.470 37.037 0.00 0.00 34.83 2.01
80 81 7.307514 CCACATTTAAGTGTCGCTGTAACTAAA 60.308 37.037 0.00 0.00 37.82 1.85
83 84 4.451096 CCACATTTAAGTGTCGCTGTAACT 59.549 41.667 0.00 0.00 37.82 2.24
84 85 4.449743 TCCACATTTAAGTGTCGCTGTAAC 59.550 41.667 0.00 0.00 37.82 2.50
86 87 4.260139 TCCACATTTAAGTGTCGCTGTA 57.740 40.909 0.00 0.00 37.82 2.74
87 88 3.120321 TCCACATTTAAGTGTCGCTGT 57.880 42.857 0.00 0.00 37.82 4.40
88 89 3.436704 ACATCCACATTTAAGTGTCGCTG 59.563 43.478 0.00 0.00 37.82 5.18
89 90 3.674997 ACATCCACATTTAAGTGTCGCT 58.325 40.909 0.00 0.00 37.82 4.93
90 91 3.684788 AGACATCCACATTTAAGTGTCGC 59.315 43.478 0.00 0.00 40.49 5.19
91 92 5.062683 CAGAGACATCCACATTTAAGTGTCG 59.937 44.000 0.00 0.00 40.49 4.35
92 93 6.166279 TCAGAGACATCCACATTTAAGTGTC 58.834 40.000 0.00 0.00 37.82 3.67
94 95 7.621428 ATTCAGAGACATCCACATTTAAGTG 57.379 36.000 0.00 0.00 39.21 3.16
95 96 9.388506 CTTATTCAGAGACATCCACATTTAAGT 57.611 33.333 0.00 0.00 0.00 2.24
96 97 8.341173 GCTTATTCAGAGACATCCACATTTAAG 58.659 37.037 0.00 0.00 0.00 1.85
97 98 7.828717 TGCTTATTCAGAGACATCCACATTTAA 59.171 33.333 0.00 0.00 0.00 1.52
98 99 7.280876 GTGCTTATTCAGAGACATCCACATTTA 59.719 37.037 0.00 0.00 0.00 1.40
101 102 5.121811 GTGCTTATTCAGAGACATCCACAT 58.878 41.667 0.00 0.00 0.00 3.21
102 103 4.507710 GTGCTTATTCAGAGACATCCACA 58.492 43.478 0.00 0.00 0.00 4.17
103 104 3.553511 CGTGCTTATTCAGAGACATCCAC 59.446 47.826 0.00 0.00 0.00 4.02
104 105 3.785486 CGTGCTTATTCAGAGACATCCA 58.215 45.455 0.00 0.00 0.00 3.41
105 106 2.541762 GCGTGCTTATTCAGAGACATCC 59.458 50.000 0.00 0.00 0.00 3.51
106 107 3.452474 AGCGTGCTTATTCAGAGACATC 58.548 45.455 0.00 0.00 0.00 3.06
108 109 3.444034 AGTAGCGTGCTTATTCAGAGACA 59.556 43.478 0.00 0.00 0.00 3.41
109 110 4.035278 AGTAGCGTGCTTATTCAGAGAC 57.965 45.455 0.00 0.00 0.00 3.36
110 111 5.299531 ACATAGTAGCGTGCTTATTCAGAGA 59.700 40.000 0.00 0.00 0.00 3.10
112 113 5.515797 ACATAGTAGCGTGCTTATTCAGA 57.484 39.130 0.00 0.00 0.00 3.27
113 114 5.343593 GCTACATAGTAGCGTGCTTATTCAG 59.656 44.000 12.75 0.00 0.00 3.02
115 116 5.117287 GTGCTACATAGTAGCGTGCTTATTC 59.883 44.000 20.37 3.43 43.13 1.75
116 117 4.982916 GTGCTACATAGTAGCGTGCTTATT 59.017 41.667 20.37 0.00 43.13 1.40
117 118 4.278669 AGTGCTACATAGTAGCGTGCTTAT 59.721 41.667 20.37 0.00 43.13 1.73
118 119 3.630769 AGTGCTACATAGTAGCGTGCTTA 59.369 43.478 20.37 3.28 43.13 3.09
120 121 2.025155 AGTGCTACATAGTAGCGTGCT 58.975 47.619 20.37 15.76 43.13 4.40
121 122 2.386249 GAGTGCTACATAGTAGCGTGC 58.614 52.381 20.37 14.20 43.13 5.34
122 123 2.287668 GGGAGTGCTACATAGTAGCGTG 60.288 54.545 20.37 0.00 43.13 5.34
123 124 1.955080 GGGAGTGCTACATAGTAGCGT 59.045 52.381 20.37 12.45 43.13 5.07
125 126 4.674281 AAAGGGAGTGCTACATAGTAGC 57.326 45.455 19.35 19.35 40.76 3.58
126 127 9.915629 CTTTATAAAGGGAGTGCTACATAGTAG 57.084 37.037 16.19 0.00 32.40 2.57
127 128 9.650714 TCTTTATAAAGGGAGTGCTACATAGTA 57.349 33.333 22.11 0.00 36.67 1.82
128 129 8.548880 TCTTTATAAAGGGAGTGCTACATAGT 57.451 34.615 22.11 0.00 36.67 2.12
129 130 9.832445 TTTCTTTATAAAGGGAGTGCTACATAG 57.168 33.333 22.11 0.00 36.67 2.23
132 133 8.107095 ACATTTCTTTATAAAGGGAGTGCTACA 58.893 33.333 22.11 0.00 36.67 2.74
133 134 8.507524 ACATTTCTTTATAAAGGGAGTGCTAC 57.492 34.615 22.11 0.00 36.67 3.58
135 136 9.125026 CATACATTTCTTTATAAAGGGAGTGCT 57.875 33.333 22.11 12.02 36.67 4.40
149 150 9.431887 TCTAAACGCTCTTACATACATTTCTTT 57.568 29.630 0.00 0.00 0.00 2.52
150 151 8.997621 TCTAAACGCTCTTACATACATTTCTT 57.002 30.769 0.00 0.00 0.00 2.52
151 152 9.601217 AATCTAAACGCTCTTACATACATTTCT 57.399 29.630 0.00 0.00 0.00 2.52
152 153 9.638300 CAATCTAAACGCTCTTACATACATTTC 57.362 33.333 0.00 0.00 0.00 2.17
154 155 7.495934 AGCAATCTAAACGCTCTTACATACATT 59.504 33.333 0.00 0.00 0.00 2.71
155 156 6.986817 AGCAATCTAAACGCTCTTACATACAT 59.013 34.615 0.00 0.00 0.00 2.29
157 158 6.830114 AGCAATCTAAACGCTCTTACATAC 57.170 37.500 0.00 0.00 0.00 2.39
159 160 8.438676 AATTAGCAATCTAAACGCTCTTACAT 57.561 30.769 0.00 0.00 38.21 2.29
160 161 7.843490 AATTAGCAATCTAAACGCTCTTACA 57.157 32.000 0.00 0.00 38.21 2.41
161 162 8.175716 ACAAATTAGCAATCTAAACGCTCTTAC 58.824 33.333 0.00 0.00 38.21 2.34
162 163 8.263940 ACAAATTAGCAATCTAAACGCTCTTA 57.736 30.769 0.00 0.00 38.21 2.10
164 165 6.743575 ACAAATTAGCAATCTAAACGCTCT 57.256 33.333 0.00 0.00 38.21 4.09
165 166 7.685594 AGTACAAATTAGCAATCTAAACGCTC 58.314 34.615 0.00 0.00 38.21 5.03
167 168 8.385111 TGTAGTACAAATTAGCAATCTAAACGC 58.615 33.333 0.00 0.00 38.21 4.84
176 177 9.515226 AGGAAATCTTGTAGTACAAATTAGCAA 57.485 29.630 16.26 0.00 37.69 3.91
177 178 9.162764 GAGGAAATCTTGTAGTACAAATTAGCA 57.837 33.333 16.26 0.00 37.69 3.49
178 179 9.384764 AGAGGAAATCTTGTAGTACAAATTAGC 57.615 33.333 16.26 12.69 37.69 3.09
192 193 7.582219 CGCTCAACGGAAAGAGGAAATCTTG 62.582 48.000 0.00 0.00 42.26 3.02
193 194 5.624222 CGCTCAACGGAAAGAGGAAATCTT 61.624 45.833 0.00 0.00 43.86 2.40
195 196 2.094417 CGCTCAACGGAAAGAGGAAATC 59.906 50.000 0.00 0.00 38.44 2.17
196 197 2.076863 CGCTCAACGGAAAGAGGAAAT 58.923 47.619 0.00 0.00 38.44 2.17
198 199 3.210857 CGCTCAACGGAAAGAGGAA 57.789 52.632 0.00 0.00 38.44 3.36
199 200 4.988065 CGCTCAACGGAAAGAGGA 57.012 55.556 0.00 0.00 38.44 3.71
209 210 0.868406 CTGTTTCCTCCACGCTCAAC 59.132 55.000 0.00 0.00 0.00 3.18
210 211 0.250295 CCTGTTTCCTCCACGCTCAA 60.250 55.000 0.00 0.00 0.00 3.02
214 215 3.056328 GCCCTGTTTCCTCCACGC 61.056 66.667 0.00 0.00 0.00 5.34
215 216 2.359975 GGCCCTGTTTCCTCCACG 60.360 66.667 0.00 0.00 0.00 4.94
216 217 0.967380 CATGGCCCTGTTTCCTCCAC 60.967 60.000 0.00 0.00 0.00 4.02
218 219 1.380380 CCATGGCCCTGTTTCCTCC 60.380 63.158 7.30 0.00 0.00 4.30
219 220 2.054453 GCCATGGCCCTGTTTCCTC 61.054 63.158 27.24 0.00 34.56 3.71
220 221 2.037847 GCCATGGCCCTGTTTCCT 59.962 61.111 27.24 0.00 34.56 3.36
232 233 3.422303 CGTGTGTGTCCGGCCATG 61.422 66.667 2.24 0.00 0.00 3.66
233 234 4.697756 CCGTGTGTGTCCGGCCAT 62.698 66.667 2.24 0.00 37.43 4.40
252 253 4.814294 GCTGGGCTGTACGGACGG 62.814 72.222 5.68 0.82 34.77 4.79
283 284 1.239296 TAGTACAGCGAGTGCACGGT 61.239 55.000 12.01 2.95 46.23 4.83
284 285 0.797249 GTAGTACAGCGAGTGCACGG 60.797 60.000 12.01 8.94 46.23 4.94
285 286 0.797249 GGTAGTACAGCGAGTGCACG 60.797 60.000 12.01 0.96 46.23 5.34
286 287 0.458025 GGGTAGTACAGCGAGTGCAC 60.458 60.000 9.40 9.40 46.23 4.57
287 288 0.896479 TGGGTAGTACAGCGAGTGCA 60.896 55.000 2.06 0.00 46.23 4.57
288 289 0.245539 TTGGGTAGTACAGCGAGTGC 59.754 55.000 2.06 0.00 43.24 4.40
290 291 1.817447 GAGTTGGGTAGTACAGCGAGT 59.183 52.381 2.06 0.00 0.00 4.18
292 293 0.806868 CGAGTTGGGTAGTACAGCGA 59.193 55.000 2.06 0.00 0.00 4.93
294 295 0.459759 GGCGAGTTGGGTAGTACAGC 60.460 60.000 2.06 0.00 0.00 4.40
295 296 0.892755 TGGCGAGTTGGGTAGTACAG 59.107 55.000 2.06 0.00 0.00 2.74
296 297 1.563924 ATGGCGAGTTGGGTAGTACA 58.436 50.000 2.06 0.00 0.00 2.90
297 298 2.685850 AATGGCGAGTTGGGTAGTAC 57.314 50.000 0.00 0.00 0.00 2.73
298 299 3.131577 CAGTAATGGCGAGTTGGGTAGTA 59.868 47.826 0.00 0.00 0.00 1.82
300 301 2.093658 ACAGTAATGGCGAGTTGGGTAG 60.094 50.000 0.00 0.00 0.00 3.18
301 302 1.903860 ACAGTAATGGCGAGTTGGGTA 59.096 47.619 0.00 0.00 0.00 3.69
302 303 0.690762 ACAGTAATGGCGAGTTGGGT 59.309 50.000 0.00 0.00 0.00 4.51
303 304 1.066143 AGACAGTAATGGCGAGTTGGG 60.066 52.381 0.00 0.00 0.00 4.12
304 305 2.002586 CAGACAGTAATGGCGAGTTGG 58.997 52.381 0.00 0.00 0.00 3.77
305 306 1.394917 GCAGACAGTAATGGCGAGTTG 59.605 52.381 0.00 0.00 0.00 3.16
307 308 0.108138 GGCAGACAGTAATGGCGAGT 60.108 55.000 0.00 0.00 31.92 4.18
308 309 0.811616 GGGCAGACAGTAATGGCGAG 60.812 60.000 0.00 0.00 42.55 5.03
310 311 0.676466 TTGGGCAGACAGTAATGGCG 60.676 55.000 0.00 0.00 42.55 5.69
311 312 0.811281 GTTGGGCAGACAGTAATGGC 59.189 55.000 0.00 0.00 41.01 4.40
312 313 1.086696 CGTTGGGCAGACAGTAATGG 58.913 55.000 0.00 0.00 0.00 3.16
313 314 1.808411 ACGTTGGGCAGACAGTAATG 58.192 50.000 0.00 0.00 0.00 1.90
315 316 3.688694 AATACGTTGGGCAGACAGTAA 57.311 42.857 0.00 0.00 0.00 2.24
316 317 3.429822 GCTAATACGTTGGGCAGACAGTA 60.430 47.826 0.00 0.00 0.00 2.74
318 319 1.933853 GCTAATACGTTGGGCAGACAG 59.066 52.381 0.00 0.00 0.00 3.51
319 320 1.406341 GGCTAATACGTTGGGCAGACA 60.406 52.381 0.00 0.00 40.45 3.41
320 321 1.296727 GGCTAATACGTTGGGCAGAC 58.703 55.000 0.00 0.00 40.45 3.51
321 322 0.179094 CGGCTAATACGTTGGGCAGA 60.179 55.000 0.00 0.00 40.72 4.26
323 324 1.153329 CCGGCTAATACGTTGGGCA 60.153 57.895 0.00 0.00 40.72 5.36
324 325 2.540228 GCCGGCTAATACGTTGGGC 61.540 63.158 22.15 0.00 37.90 5.36
325 326 1.890510 GGCCGGCTAATACGTTGGG 60.891 63.158 28.56 0.00 0.00 4.12
326 327 0.534203 ATGGCCGGCTAATACGTTGG 60.534 55.000 28.56 0.00 0.00 3.77
327 328 1.002900 CAATGGCCGGCTAATACGTTG 60.003 52.381 28.56 21.46 0.00 4.10
328 329 1.305201 CAATGGCCGGCTAATACGTT 58.695 50.000 28.56 13.87 0.00 3.99
372 373 2.045926 AAGATGGCTGCCACCGTC 60.046 61.111 25.99 17.96 44.76 4.79
374 375 2.825836 GGAAGATGGCTGCCACCG 60.826 66.667 25.99 0.00 39.94 4.94
375 376 1.000396 AAGGAAGATGGCTGCCACC 60.000 57.895 25.99 20.29 43.05 4.61
376 377 1.318158 CCAAGGAAGATGGCTGCCAC 61.318 60.000 25.99 17.46 43.05 5.01
378 379 1.034292 GTCCAAGGAAGATGGCTGCC 61.034 60.000 12.87 12.87 40.58 4.85
379 380 1.034292 GGTCCAAGGAAGATGGCTGC 61.034 60.000 0.00 0.00 37.88 5.25
382 383 0.620556 TCTGGTCCAAGGAAGATGGC 59.379 55.000 0.00 0.00 37.88 4.40
384 385 2.363683 GCTTCTGGTCCAAGGAAGATG 58.636 52.381 20.05 6.00 38.82 2.90
385 386 1.283321 GGCTTCTGGTCCAAGGAAGAT 59.717 52.381 20.05 0.00 38.82 2.40
386 387 0.693049 GGCTTCTGGTCCAAGGAAGA 59.307 55.000 20.05 0.00 38.82 2.87
387 388 0.401738 TGGCTTCTGGTCCAAGGAAG 59.598 55.000 14.00 14.00 39.32 3.46
388 389 0.110486 GTGGCTTCTGGTCCAAGGAA 59.890 55.000 0.00 0.00 33.57 3.36
389 390 1.761174 GTGGCTTCTGGTCCAAGGA 59.239 57.895 0.00 0.00 33.57 3.36
391 392 2.328099 GCGTGGCTTCTGGTCCAAG 61.328 63.158 0.00 0.00 33.57 3.61
393 394 4.680237 CGCGTGGCTTCTGGTCCA 62.680 66.667 0.00 0.00 0.00 4.02
394 395 4.681978 ACGCGTGGCTTCTGGTCC 62.682 66.667 12.93 0.00 0.00 4.46
395 396 3.414700 CACGCGTGGCTTCTGGTC 61.415 66.667 31.15 0.00 0.00 4.02
418 419 3.864686 CATGTAGGCCGCACGCAC 61.865 66.667 5.20 0.00 40.31 5.34
428 429 3.195002 CGTGTGGCGCCATGTAGG 61.195 66.667 35.23 22.27 41.84 3.18
429 430 2.434185 ACGTGTGGCGCCATGTAG 60.434 61.111 35.23 24.97 46.11 2.74
430 431 2.433491 GACGTGTGGCGCCATGTA 60.433 61.111 35.23 19.58 46.11 2.29
477 478 4.514577 ACGGCCGAGATCGCCTTG 62.515 66.667 35.90 0.00 38.18 3.61
478 479 4.208686 GACGGCCGAGATCGCCTT 62.209 66.667 35.90 5.18 38.18 4.35
482 483 4.271816 CAGGGACGGCCGAGATCG 62.272 72.222 35.90 13.38 39.44 3.69
483 484 4.593864 GCAGGGACGGCCGAGATC 62.594 72.222 35.90 19.68 45.65 2.75
693 708 3.234730 GATGGGGATCGGACGGCT 61.235 66.667 0.00 0.00 0.00 5.52
856 902 4.853468 ATCACTCTCCTCACTCTCTGTA 57.147 45.455 0.00 0.00 0.00 2.74
858 904 4.136796 CCTATCACTCTCCTCACTCTCTG 58.863 52.174 0.00 0.00 0.00 3.35
874 920 5.946486 TCTCAAGCTCTCACTATCCTATCA 58.054 41.667 0.00 0.00 0.00 2.15
891 937 2.208431 GCCATTGACGATCCTCTCAAG 58.792 52.381 0.00 0.00 30.04 3.02
895 941 0.387202 CTCGCCATTGACGATCCTCT 59.613 55.000 0.00 0.00 39.12 3.69
899 945 0.598680 CCTCCTCGCCATTGACGATC 60.599 60.000 0.00 0.00 39.12 3.69
973 1021 2.364186 GGTGGGGATTTGGCTGGG 60.364 66.667 0.00 0.00 0.00 4.45
978 1026 2.480610 CGATGCGGTGGGGATTTGG 61.481 63.158 0.00 0.00 0.00 3.28
985 1033 4.854924 TGGATGCGATGCGGTGGG 62.855 66.667 0.00 0.00 0.00 4.61
986 1034 2.592574 ATGGATGCGATGCGGTGG 60.593 61.111 0.00 0.00 0.00 4.61
987 1035 1.232621 ATGATGGATGCGATGCGGTG 61.233 55.000 0.00 0.00 0.00 4.94
989 1037 1.642037 GGATGATGGATGCGATGCGG 61.642 60.000 0.00 0.00 0.00 5.69
992 1040 2.014857 GGATGGATGATGGATGCGATG 58.985 52.381 0.00 0.00 0.00 3.84
993 1041 1.631898 TGGATGGATGATGGATGCGAT 59.368 47.619 0.00 0.00 0.00 4.58
995 1043 2.014857 GATGGATGGATGATGGATGCG 58.985 52.381 0.00 0.00 0.00 4.73
996 1044 2.025226 AGGATGGATGGATGATGGATGC 60.025 50.000 0.00 0.00 0.00 3.91
997 1045 4.720273 TCTAGGATGGATGGATGATGGATG 59.280 45.833 0.00 0.00 0.00 3.51
998 1046 4.969133 TCTAGGATGGATGGATGATGGAT 58.031 43.478 0.00 0.00 0.00 3.41
999 1047 4.424761 TCTAGGATGGATGGATGATGGA 57.575 45.455 0.00 0.00 0.00 3.41
1000 1048 5.712084 AATCTAGGATGGATGGATGATGG 57.288 43.478 0.00 0.00 36.00 3.51
1001 1049 7.889073 AGAAAAATCTAGGATGGATGGATGATG 59.111 37.037 0.00 0.00 36.00 3.07
1002 1050 7.997915 AGAAAAATCTAGGATGGATGGATGAT 58.002 34.615 0.00 0.00 36.00 2.45
1003 1051 7.398289 AGAAAAATCTAGGATGGATGGATGA 57.602 36.000 0.00 0.00 36.00 2.92
1116 1184 4.527583 CTGCAGAGCCTCCTCGCC 62.528 72.222 8.42 0.00 43.05 5.54
1157 1225 5.105675 ACATCTACGAAGGAAGAAGAAGGTC 60.106 44.000 0.00 0.00 0.00 3.85
1159 1227 5.331876 ACATCTACGAAGGAAGAAGAAGG 57.668 43.478 0.00 0.00 0.00 3.46
1422 1516 3.047115 AGCTTCAGTGAGGATGATGGAT 58.953 45.455 6.41 0.00 0.00 3.41
1423 1517 2.433604 GAGCTTCAGTGAGGATGATGGA 59.566 50.000 6.41 0.00 0.00 3.41
1424 1518 2.802415 CGAGCTTCAGTGAGGATGATGG 60.802 54.545 6.41 0.00 0.00 3.51
1426 1520 2.361757 CTCGAGCTTCAGTGAGGATGAT 59.638 50.000 6.41 0.00 0.00 2.45
1427 1521 1.747924 CTCGAGCTTCAGTGAGGATGA 59.252 52.381 6.41 0.03 0.00 2.92
1428 1522 1.802136 GCTCGAGCTTCAGTGAGGATG 60.802 57.143 29.88 0.00 38.21 3.51
1429 1523 0.459489 GCTCGAGCTTCAGTGAGGAT 59.541 55.000 29.88 0.00 38.21 3.24
1473 1581 1.809547 CTCTCACTCGCTCTCAAGTCA 59.190 52.381 0.00 0.00 0.00 3.41
1476 1584 1.539388 ACACTCTCACTCGCTCTCAAG 59.461 52.381 0.00 0.00 0.00 3.02
1488 1598 2.224354 TGCTTTGCTGATCACACTCTCA 60.224 45.455 0.00 0.00 0.00 3.27
1525 1635 2.292192 CCTCCTTCTCCTCCTCTGAACT 60.292 54.545 0.00 0.00 0.00 3.01
1526 1636 2.107366 CCTCCTTCTCCTCCTCTGAAC 58.893 57.143 0.00 0.00 0.00 3.18
1527 1637 2.003830 TCCTCCTTCTCCTCCTCTGAA 58.996 52.381 0.00 0.00 0.00 3.02
1528 1638 1.568597 CTCCTCCTTCTCCTCCTCTGA 59.431 57.143 0.00 0.00 0.00 3.27
1529 1639 1.287739 ACTCCTCCTTCTCCTCCTCTG 59.712 57.143 0.00 0.00 0.00 3.35
1531 1641 2.543037 AACTCCTCCTTCTCCTCCTC 57.457 55.000 0.00 0.00 0.00 3.71
1540 1650 1.279271 AGCGCAATGTAACTCCTCCTT 59.721 47.619 11.47 0.00 0.00 3.36
1582 1703 0.742281 CTGCCAACATCCCTGAGACG 60.742 60.000 0.00 0.00 0.00 4.18
1896 2024 2.818169 GGGGCGCCATACTCATCCA 61.818 63.158 30.85 0.00 0.00 3.41
2027 2155 2.443016 CACCTCCTCCTCCTCCCG 60.443 72.222 0.00 0.00 0.00 5.14
2173 2301 4.773117 GTGCCCGACGAGGACGAC 62.773 72.222 0.00 0.00 45.00 4.34
2743 2871 2.746359 GTGTCCTGCAGCTCCTGT 59.254 61.111 8.66 0.00 33.43 4.00
3501 3632 7.538575 TGAAAAAGTTCAGTTCTTTCCTCTTG 58.461 34.615 0.00 0.00 38.88 3.02
3805 3953 9.865321 CTGAAAAGAATGTAATGGAATGAATGT 57.135 29.630 0.00 0.00 0.00 2.71
3806 3954 8.814235 GCTGAAAAGAATGTAATGGAATGAATG 58.186 33.333 0.00 0.00 0.00 2.67
3807 3955 7.983484 GGCTGAAAAGAATGTAATGGAATGAAT 59.017 33.333 0.00 0.00 0.00 2.57
3808 3956 7.039152 TGGCTGAAAAGAATGTAATGGAATGAA 60.039 33.333 0.00 0.00 0.00 2.57
3809 3957 6.436847 TGGCTGAAAAGAATGTAATGGAATGA 59.563 34.615 0.00 0.00 0.00 2.57
3810 3958 6.632909 TGGCTGAAAAGAATGTAATGGAATG 58.367 36.000 0.00 0.00 0.00 2.67
3811 3959 6.855763 TGGCTGAAAAGAATGTAATGGAAT 57.144 33.333 0.00 0.00 0.00 3.01
3812 3960 6.855763 ATGGCTGAAAAGAATGTAATGGAA 57.144 33.333 0.00 0.00 0.00 3.53
3813 3961 6.211184 ACAATGGCTGAAAAGAATGTAATGGA 59.789 34.615 0.00 0.00 0.00 3.41
3814 3962 6.400568 ACAATGGCTGAAAAGAATGTAATGG 58.599 36.000 0.00 0.00 0.00 3.16
3815 3963 8.863049 GTTACAATGGCTGAAAAGAATGTAATG 58.137 33.333 0.00 0.00 0.00 1.90
3816 3964 8.034804 GGTTACAATGGCTGAAAAGAATGTAAT 58.965 33.333 0.00 0.00 0.00 1.89
3817 3965 7.232534 AGGTTACAATGGCTGAAAAGAATGTAA 59.767 33.333 0.00 0.00 0.00 2.41
3837 3985 7.672983 TGACTCTGATCAATTCAAAGGTTAC 57.327 36.000 0.00 0.00 32.78 2.50
3840 3988 8.868522 TTTATGACTCTGATCAATTCAAAGGT 57.131 30.769 0.00 0.00 32.78 3.50
3841 3989 9.731819 CATTTATGACTCTGATCAATTCAAAGG 57.268 33.333 0.00 0.00 32.78 3.11
3848 3996 9.636789 TCCATTTCATTTATGACTCTGATCAAT 57.363 29.630 0.00 0.00 36.36 2.57
3852 4006 9.636789 TGATTCCATTTCATTTATGACTCTGAT 57.363 29.630 0.00 0.00 36.36 2.90
3881 4035 7.164122 TGGAGCATGGATGAAATAGACTTATC 58.836 38.462 0.00 0.00 0.00 1.75
3885 4039 5.163120 ACATGGAGCATGGATGAAATAGACT 60.163 40.000 0.00 0.00 45.16 3.24
3886 4040 5.068636 ACATGGAGCATGGATGAAATAGAC 58.931 41.667 0.00 0.00 45.16 2.59
3887 4041 5.314718 ACATGGAGCATGGATGAAATAGA 57.685 39.130 0.00 0.00 45.16 1.98
3898 4052 4.635324 TGTACATACACAACATGGAGCATG 59.365 41.667 0.00 0.00 46.18 4.06
3901 4055 5.586243 AGATTGTACATACACAACATGGAGC 59.414 40.000 0.00 0.00 41.02 4.70
3904 4058 7.538334 CACAAAGATTGTACATACACAACATGG 59.462 37.037 0.00 0.00 43.23 3.66
3906 4060 8.289618 GTCACAAAGATTGTACATACACAACAT 58.710 33.333 0.00 0.00 43.23 2.71
3907 4061 7.281100 TGTCACAAAGATTGTACATACACAACA 59.719 33.333 0.00 0.00 43.23 3.33
3908 4062 7.635423 TGTCACAAAGATTGTACATACACAAC 58.365 34.615 0.00 0.00 43.23 3.32
3909 4063 7.793927 TGTCACAAAGATTGTACATACACAA 57.206 32.000 0.00 0.00 43.23 3.33
3911 4065 8.171196 CAGATGTCACAAAGATTGTACATACAC 58.829 37.037 0.00 0.00 43.23 2.90
3914 4259 9.500785 TTTCAGATGTCACAAAGATTGTACATA 57.499 29.630 0.00 0.00 43.23 2.29
3917 4262 8.292448 ACATTTCAGATGTCACAAAGATTGTAC 58.708 33.333 0.00 0.00 43.23 2.90
3920 4265 7.143340 ACACATTTCAGATGTCACAAAGATTG 58.857 34.615 0.00 0.00 0.00 2.67
3930 4275 6.203530 TCAGACAAGAACACATTTCAGATGTC 59.796 38.462 0.00 0.00 35.95 3.06
3931 4276 6.057533 TCAGACAAGAACACATTTCAGATGT 58.942 36.000 0.00 0.00 0.00 3.06
3937 4282 8.697067 CAATCAATTCAGACAAGAACACATTTC 58.303 33.333 0.00 0.00 0.00 2.17
3944 4289 7.031975 GGGATTCAATCAATTCAGACAAGAAC 58.968 38.462 0.00 0.00 0.00 3.01
3946 4291 6.247676 TGGGATTCAATCAATTCAGACAAGA 58.752 36.000 0.00 0.00 0.00 3.02
3947 4292 6.519679 TGGGATTCAATCAATTCAGACAAG 57.480 37.500 0.00 0.00 0.00 3.16
3948 4293 7.364056 GGAATGGGATTCAATCAATTCAGACAA 60.364 37.037 19.29 0.00 41.03 3.18
3950 4295 6.462067 GGGAATGGGATTCAATCAATTCAGAC 60.462 42.308 19.29 10.21 41.03 3.51
3952 4297 5.364446 TGGGAATGGGATTCAATCAATTCAG 59.636 40.000 19.29 0.00 41.03 3.02
3954 4299 5.874897 TGGGAATGGGATTCAATCAATTC 57.125 39.130 13.21 13.21 41.03 2.17
3955 4300 5.072600 CCATGGGAATGGGATTCAATCAATT 59.927 40.000 2.85 0.00 41.03 2.32
3957 4302 3.968649 CCATGGGAATGGGATTCAATCAA 59.031 43.478 2.85 0.00 41.03 2.57
3958 4303 3.207093 TCCATGGGAATGGGATTCAATCA 59.793 43.478 13.02 0.00 41.95 2.57
3959 4304 3.830755 CTCCATGGGAATGGGATTCAATC 59.169 47.826 13.02 0.00 41.95 2.67
3960 4305 3.468244 TCTCCATGGGAATGGGATTCAAT 59.532 43.478 13.02 0.00 41.95 2.57
3961 4306 2.858133 TCTCCATGGGAATGGGATTCAA 59.142 45.455 13.02 0.00 41.95 2.69
3962 4307 2.501667 TCTCCATGGGAATGGGATTCA 58.498 47.619 13.02 0.00 41.95 2.57
3963 4308 3.600448 TTCTCCATGGGAATGGGATTC 57.400 47.619 13.02 0.00 41.95 2.52
3964 4309 4.292643 CTTTTCTCCATGGGAATGGGATT 58.707 43.478 13.02 0.00 41.95 3.01
3965 4310 3.919834 CTTTTCTCCATGGGAATGGGAT 58.080 45.455 13.02 0.00 41.95 3.85
3966 4311 2.624029 GCTTTTCTCCATGGGAATGGGA 60.624 50.000 13.02 0.00 41.95 4.37
3967 4312 1.758862 GCTTTTCTCCATGGGAATGGG 59.241 52.381 13.02 8.41 41.95 4.00
3968 4313 2.429610 CTGCTTTTCTCCATGGGAATGG 59.570 50.000 13.02 10.50 43.01 3.16
3969 4314 3.094572 ACTGCTTTTCTCCATGGGAATG 58.905 45.455 13.02 10.84 0.00 2.67
3970 4315 3.094572 CACTGCTTTTCTCCATGGGAAT 58.905 45.455 13.02 0.00 0.00 3.01
3971 4316 2.108075 TCACTGCTTTTCTCCATGGGAA 59.892 45.455 13.02 11.54 0.00 3.97
3983 4328 2.689471 TGCACACAGAATTCACTGCTTT 59.311 40.909 8.44 0.00 41.06 3.51
3986 4331 4.424061 TTATGCACACAGAATTCACTGC 57.576 40.909 8.44 8.66 41.06 4.40
3987 4332 6.384224 ACAATTATGCACACAGAATTCACTG 58.616 36.000 8.44 4.60 42.55 3.66
3989 4334 6.308766 GGAACAATTATGCACACAGAATTCAC 59.691 38.462 8.44 0.00 42.55 3.18
3990 4335 6.015603 TGGAACAATTATGCACACAGAATTCA 60.016 34.615 8.44 0.00 42.55 2.57
3991 4336 6.389091 TGGAACAATTATGCACACAGAATTC 58.611 36.000 0.00 0.00 42.55 2.17
3995 4340 4.650734 TCTGGAACAATTATGCACACAGA 58.349 39.130 0.00 0.00 38.70 3.41
4000 4350 6.038356 CCTGAATTCTGGAACAATTATGCAC 58.962 40.000 23.28 0.00 38.70 4.57
4013 4363 6.409704 TGAATCTGTTCTACCTGAATTCTGG 58.590 40.000 25.23 25.23 36.99 3.86
4024 4374 7.375053 AGTGAAGTTCTCTGAATCTGTTCTAC 58.625 38.462 6.65 0.00 35.33 2.59
4025 4375 7.450014 AGAGTGAAGTTCTCTGAATCTGTTCTA 59.550 37.037 12.03 0.00 40.26 2.10
4032 4419 8.770438 ATAACAAGAGTGAAGTTCTCTGAATC 57.230 34.615 12.03 0.00 41.36 2.52
4033 4420 9.213799 GAATAACAAGAGTGAAGTTCTCTGAAT 57.786 33.333 12.03 0.00 41.36 2.57
4044 4431 9.424319 GATACAGACAAGAATAACAAGAGTGAA 57.576 33.333 0.00 0.00 0.00 3.18
4045 4432 8.035394 GGATACAGACAAGAATAACAAGAGTGA 58.965 37.037 0.00 0.00 0.00 3.41
4046 4433 7.278868 GGGATACAGACAAGAATAACAAGAGTG 59.721 40.741 0.00 0.00 39.74 3.51
4047 4434 7.038302 TGGGATACAGACAAGAATAACAAGAGT 60.038 37.037 0.00 0.00 39.74 3.24
4048 4435 7.331026 TGGGATACAGACAAGAATAACAAGAG 58.669 38.462 0.00 0.00 39.74 2.85
4049 4436 7.252612 TGGGATACAGACAAGAATAACAAGA 57.747 36.000 0.00 0.00 39.74 3.02
4050 4437 7.467811 GCATGGGATACAGACAAGAATAACAAG 60.468 40.741 0.00 0.00 39.74 3.16
4052 4439 5.822519 GCATGGGATACAGACAAGAATAACA 59.177 40.000 0.00 0.00 39.74 2.41
4053 4440 6.017605 CAGCATGGGATACAGACAAGAATAAC 60.018 42.308 0.00 0.00 39.74 1.89
4056 4443 4.080129 ACAGCATGGGATACAGACAAGAAT 60.080 41.667 0.00 0.00 43.62 2.40
4059 4446 3.272574 ACAGCATGGGATACAGACAAG 57.727 47.619 0.00 0.00 43.62 3.16
4062 4449 3.609853 TGAAACAGCATGGGATACAGAC 58.390 45.455 0.00 0.00 43.62 3.51
4064 4451 3.875727 CTCTGAAACAGCATGGGATACAG 59.124 47.826 0.00 0.00 43.62 2.74
4066 4453 4.125703 CTCTCTGAAACAGCATGGGATAC 58.874 47.826 0.00 0.00 43.62 2.24
4068 4455 2.842496 TCTCTCTGAAACAGCATGGGAT 59.158 45.455 0.00 0.00 43.62 3.85
4069 4456 2.259917 TCTCTCTGAAACAGCATGGGA 58.740 47.619 0.00 0.00 43.62 4.37
4070 4457 2.775911 TCTCTCTGAAACAGCATGGG 57.224 50.000 0.00 0.00 43.62 4.00
4071 4458 2.943690 CCATCTCTCTGAAACAGCATGG 59.056 50.000 0.00 0.00 43.62 3.66
4073 4460 3.773667 TCTCCATCTCTCTGAAACAGCAT 59.226 43.478 0.00 0.00 0.00 3.79
4074 4461 3.168292 TCTCCATCTCTCTGAAACAGCA 58.832 45.455 0.00 0.00 0.00 4.41
4076 4463 5.127519 AGTCATCTCCATCTCTCTGAAACAG 59.872 44.000 0.00 0.00 0.00 3.16
4077 4464 5.022122 AGTCATCTCCATCTCTCTGAAACA 58.978 41.667 0.00 0.00 0.00 2.83
4078 4465 5.126869 TCAGTCATCTCCATCTCTCTGAAAC 59.873 44.000 0.00 0.00 0.00 2.78
4079 4466 5.267587 TCAGTCATCTCCATCTCTCTGAAA 58.732 41.667 0.00 0.00 0.00 2.69
4080 4467 4.864726 TCAGTCATCTCCATCTCTCTGAA 58.135 43.478 0.00 0.00 0.00 3.02
4082 4469 4.888823 TCTTCAGTCATCTCCATCTCTCTG 59.111 45.833 0.00 0.00 0.00 3.35
4083 4470 5.128033 TCTTCAGTCATCTCCATCTCTCT 57.872 43.478 0.00 0.00 0.00 3.10
4084 4471 5.850557 TTCTTCAGTCATCTCCATCTCTC 57.149 43.478 0.00 0.00 0.00 3.20
4086 4473 7.046652 TGAATTTCTTCAGTCATCTCCATCTC 58.953 38.462 0.00 0.00 36.46 2.75
4087 4474 6.955364 TGAATTTCTTCAGTCATCTCCATCT 58.045 36.000 0.00 0.00 36.46 2.90
4100 4487 7.060383 AGAGTGAGTTCTCTGAATTTCTTCA 57.940 36.000 0.00 0.00 42.36 3.02
4101 4488 8.303876 ACTAGAGTGAGTTCTCTGAATTTCTTC 58.696 37.037 0.00 0.00 43.54 2.87
4102 4489 8.189119 ACTAGAGTGAGTTCTCTGAATTTCTT 57.811 34.615 0.00 0.00 43.54 2.52
4103 4490 7.775053 ACTAGAGTGAGTTCTCTGAATTTCT 57.225 36.000 0.00 0.00 43.54 2.52
4120 4507 8.110908 ACTCTACCATTTCACTAGAACTAGAGT 58.889 37.037 14.64 0.00 35.22 3.24
4121 4508 8.402472 CACTCTACCATTTCACTAGAACTAGAG 58.598 40.741 14.64 7.72 36.97 2.43
4127 4514 7.962995 ATCTCACTCTACCATTTCACTAGAA 57.037 36.000 0.00 0.00 0.00 2.10
4131 4518 8.083828 ACATAATCTCACTCTACCATTTCACT 57.916 34.615 0.00 0.00 0.00 3.41
4147 4534 6.845302 TGCAAAGTGTGATTGACATAATCTC 58.155 36.000 0.00 0.00 36.78 2.75
4149 4536 7.543172 ACAATGCAAAGTGTGATTGACATAATC 59.457 33.333 10.59 0.00 36.78 1.75
4156 4554 5.008619 ACAACAATGCAAAGTGTGATTGA 57.991 34.783 10.59 0.00 33.03 2.57
4196 4600 5.351740 GCTTAGTTCAGATCAAGTTGTACCC 59.648 44.000 2.11 0.00 0.00 3.69
4208 4612 5.816777 GCTCTTGATGAAGCTTAGTTCAGAT 59.183 40.000 0.00 0.00 39.78 2.90
4224 4629 2.676839 CTGTCATTTCGCTGCTCTTGAT 59.323 45.455 0.00 0.00 0.00 2.57
4225 4630 2.071540 CTGTCATTTCGCTGCTCTTGA 58.928 47.619 0.00 0.00 0.00 3.02
4226 4631 2.071540 TCTGTCATTTCGCTGCTCTTG 58.928 47.619 0.00 0.00 0.00 3.02
4228 4633 2.462456 TTCTGTCATTTCGCTGCTCT 57.538 45.000 0.00 0.00 0.00 4.09
4229 4634 2.674852 TCATTCTGTCATTTCGCTGCTC 59.325 45.455 0.00 0.00 0.00 4.26
4255 6843 0.663153 AACAGAAGGAACAAGTGCGC 59.337 50.000 0.00 0.00 0.00 6.09
4257 6845 2.878406 TGCTAACAGAAGGAACAAGTGC 59.122 45.455 0.00 0.00 0.00 4.40
4264 6856 0.685097 AGCCGTGCTAACAGAAGGAA 59.315 50.000 0.00 0.00 36.99 3.36
4288 6880 4.613925 TTCCCATGATCTCATCTGCTAC 57.386 45.455 0.00 0.00 33.61 3.58
4300 6892 4.098894 GCCCCAATTGATATTCCCATGAT 58.901 43.478 7.12 0.00 0.00 2.45
4302 6894 2.568509 GGCCCCAATTGATATTCCCATG 59.431 50.000 7.12 0.00 0.00 3.66
4444 8684 8.674263 AGTTTCTCATATAAATCAAGCTCTGG 57.326 34.615 0.00 0.00 0.00 3.86
4469 8709 7.565029 TGTTCCTCACTGAATCCTTGATCTATA 59.435 37.037 0.00 0.00 0.00 1.31
4475 8715 4.103153 AGTTGTTCCTCACTGAATCCTTGA 59.897 41.667 0.00 0.00 0.00 3.02
4477 8717 4.713792 AGTTGTTCCTCACTGAATCCTT 57.286 40.909 0.00 0.00 0.00 3.36
4478 8718 4.713792 AAGTTGTTCCTCACTGAATCCT 57.286 40.909 0.00 0.00 0.00 3.24
4502 8742 6.887626 TCAGTTAATTAAACTCCCCAACAC 57.112 37.500 0.00 0.00 45.64 3.32
4527 8767 2.610232 GCACTAAGGCCACAACAATTGG 60.610 50.000 10.83 0.00 37.17 3.16
4528 8768 2.297033 AGCACTAAGGCCACAACAATTG 59.703 45.455 5.01 3.24 0.00 2.32
4529 8769 2.558359 GAGCACTAAGGCCACAACAATT 59.442 45.455 5.01 0.00 0.00 2.32
4530 8770 2.162681 GAGCACTAAGGCCACAACAAT 58.837 47.619 5.01 0.00 0.00 2.71
4534 8774 0.472044 TGTGAGCACTAAGGCCACAA 59.528 50.000 5.01 0.00 39.94 3.33
4535 8775 0.692476 ATGTGAGCACTAAGGCCACA 59.308 50.000 5.01 0.00 43.74 4.17
4536 8776 2.691409 TATGTGAGCACTAAGGCCAC 57.309 50.000 5.01 0.00 36.29 5.01
4539 8779 3.804873 GCTACTTATGTGAGCACTAAGGC 59.195 47.826 16.64 11.20 36.20 4.35
4540 8780 4.045104 CGCTACTTATGTGAGCACTAAGG 58.955 47.826 16.64 4.94 35.91 2.69
4541 8781 3.487574 GCGCTACTTATGTGAGCACTAAG 59.512 47.826 0.00 13.41 35.91 2.18
4542 8782 3.444916 GCGCTACTTATGTGAGCACTAA 58.555 45.455 0.00 0.00 35.91 2.24
4544 8784 1.471676 GGCGCTACTTATGTGAGCACT 60.472 52.381 7.64 0.00 35.91 4.40
4545 8785 0.931005 GGCGCTACTTATGTGAGCAC 59.069 55.000 7.64 0.00 35.91 4.40
4689 8987 8.734386 GGTGAGAACTTGAGTTGAATAAATCAT 58.266 33.333 0.30 0.00 40.19 2.45
4704 9002 1.728971 GTGAGCGATGGTGAGAACTTG 59.271 52.381 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.