Multiple sequence alignment - TraesCS7D01G053200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G053200 chr7D 100.000 2312 0 0 2277 4588 28031667 28029356 0.000000e+00 4270.0
1 TraesCS7D01G053200 chr7D 100.000 1921 0 0 1 1921 28033943 28032023 0.000000e+00 3548.0
2 TraesCS7D01G053200 chr7D 84.271 871 100 16 3019 3875 28040929 28040082 0.000000e+00 815.0
3 TraesCS7D01G053200 chr7D 84.202 595 88 5 685 1276 28043553 28042962 1.430000e-159 573.0
4 TraesCS7D01G053200 chr7D 89.825 285 27 2 2673 2956 28041203 28040920 9.380000e-97 364.0
5 TraesCS7D01G053200 chr7D 90.000 260 23 1 3338 3594 28013365 28013106 2.650000e-87 333.0
6 TraesCS7D01G053200 chr7D 85.268 224 27 3 692 914 28013582 28013364 4.620000e-55 226.0
7 TraesCS7D01G053200 chr7D 83.069 189 17 9 1284 1460 28042257 28042072 1.710000e-34 158.0
8 TraesCS7D01G053200 chr7D 95.556 90 4 0 1463 1552 10055378 10055467 1.330000e-30 145.0
9 TraesCS7D01G053200 chr7D 94.565 92 5 0 1462 1553 69082604 69082513 4.780000e-30 143.0
10 TraesCS7D01G053200 chr1B 89.456 1489 140 8 2673 4151 676259433 676257952 0.000000e+00 1864.0
11 TraesCS7D01G053200 chr1B 83.900 559 77 6 685 1232 676260690 676260134 5.260000e-144 521.0
12 TraesCS7D01G053200 chr1B 87.637 364 26 9 4216 4563 676257932 676257572 5.530000e-109 405.0
13 TraesCS7D01G053200 chr1A 88.273 1262 124 13 2874 4132 583333695 583332455 0.000000e+00 1489.0
14 TraesCS7D01G053200 chr1A 90.113 354 22 7 4216 4562 583332446 583332099 9.050000e-122 448.0
15 TraesCS7D01G053200 chr1A 86.310 336 46 0 685 1020 583361390 583361055 2.610000e-97 366.0
16 TraesCS7D01G053200 chr1A 95.714 210 9 0 2673 2882 583335183 583334974 5.690000e-89 339.0
17 TraesCS7D01G053200 chr1A 87.302 63 8 0 2279 2341 583335666 583335604 6.370000e-09 73.1
18 TraesCS7D01G053200 chr4A 92.816 1030 58 10 3549 4563 701752778 701751750 0.000000e+00 1478.0
19 TraesCS7D01G053200 chr4A 83.955 804 95 15 3086 3875 701762897 701762114 0.000000e+00 739.0
20 TraesCS7D01G053200 chr4A 83.838 594 88 7 685 1274 701765763 701765174 4.010000e-155 558.0
21 TraesCS7D01G053200 chr4A 90.884 362 31 2 2674 3034 701763264 701762904 6.900000e-133 484.0
22 TraesCS7D01G053200 chr4A 97.701 87 2 0 1464 1550 570916153 570916239 2.860000e-32 150.0
23 TraesCS7D01G053200 chr4A 81.720 186 19 11 1287 1460 701764459 701764277 1.720000e-29 141.0
24 TraesCS7D01G053200 chr7A 91.795 975 76 2 3178 4151 28444775 28443804 0.000000e+00 1354.0
25 TraesCS7D01G053200 chr7A 90.819 806 55 10 676 1465 28447013 28446211 0.000000e+00 1061.0
26 TraesCS7D01G053200 chr7A 95.946 518 18 1 2618 3132 28445290 28444773 0.000000e+00 837.0
27 TraesCS7D01G053200 chr7A 85.845 763 96 3 2841 3594 28423654 28422895 0.000000e+00 800.0
28 TraesCS7D01G053200 chr7A 85.754 716 80 11 3064 3763 28459707 28458998 0.000000e+00 737.0
29 TraesCS7D01G053200 chr7A 84.874 595 84 5 685 1276 28462433 28461842 3.060000e-166 595.0
30 TraesCS7D01G053200 chr7A 88.222 433 29 6 4149 4567 28443758 28443334 8.860000e-137 497.0
31 TraesCS7D01G053200 chr7A 82.069 580 56 9 25 568 28447719 28447152 7.000000e-123 451.0
32 TraesCS7D01G053200 chr7A 90.385 312 28 2 2674 2984 28460040 28459730 4.270000e-110 409.0
33 TraesCS7D01G053200 chr7A 88.475 295 21 6 2319 2613 28445611 28445330 1.220000e-90 344.0
34 TraesCS7D01G053200 chr7A 88.235 255 23 6 1666 1917 28445868 28445618 9.650000e-77 298.0
35 TraesCS7D01G053200 chr7A 96.552 87 3 0 1463 1549 184126825 184126739 1.330000e-30 145.0
36 TraesCS7D01G053200 chr7A 95.946 74 2 1 1587 1660 28445979 28445907 8.060000e-23 119.0
37 TraesCS7D01G053200 chr7A 85.393 89 13 0 1188 1276 28425675 28425587 4.890000e-15 93.5
38 TraesCS7D01G053200 chr7A 96.364 55 2 0 1548 1602 28446212 28446158 1.760000e-14 91.6
39 TraesCS7D01G053200 chr7A 95.918 49 2 0 572 620 28447080 28447032 3.810000e-11 80.5
40 TraesCS7D01G053200 chr1D 87.643 1133 130 6 2673 3800 485743615 485742488 0.000000e+00 1308.0
41 TraesCS7D01G053200 chr1D 84.229 558 75 6 690 1236 485744712 485744157 8.740000e-147 531.0
42 TraesCS7D01G053200 chr1D 91.837 49 4 0 1184 1232 485744030 485743982 8.240000e-08 69.4
43 TraesCS7D01G053200 chr7B 91.935 186 12 1 2907 3089 705668127 705667942 1.640000e-64 257.0
44 TraesCS7D01G053200 chr5B 82.258 186 29 4 4278 4461 295074039 295074222 1.710000e-34 158.0
45 TraesCS7D01G053200 chr5B 94.565 92 5 0 1459 1550 285935643 285935734 4.780000e-30 143.0
46 TraesCS7D01G053200 chr2D 97.727 88 2 0 1462 1549 307490173 307490086 7.950000e-33 152.0
47 TraesCS7D01G053200 chr6B 95.699 93 4 0 1458 1550 96886071 96886163 2.860000e-32 150.0
48 TraesCS7D01G053200 chr6A 95.652 92 4 0 1458 1549 121887925 121888016 1.030000e-31 148.0
49 TraesCS7D01G053200 chr6A 79.675 123 21 4 4341 4461 468179461 468179581 8.180000e-13 86.1
50 TraesCS7D01G053200 chr2B 95.455 88 4 0 1463 1550 691994696 691994783 1.720000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G053200 chr7D 28029356 28033943 4587 True 3909.000000 4270 100.000000 1 4588 2 chr7D.!!$R3 4587
1 TraesCS7D01G053200 chr7D 28040082 28043553 3471 True 477.500000 815 85.341750 685 3875 4 chr7D.!!$R4 3190
2 TraesCS7D01G053200 chr1B 676257572 676260690 3118 True 930.000000 1864 86.997667 685 4563 3 chr1B.!!$R1 3878
3 TraesCS7D01G053200 chr1A 583332099 583335666 3567 True 587.275000 1489 90.350500 2279 4562 4 chr1A.!!$R2 2283
4 TraesCS7D01G053200 chr4A 701751750 701752778 1028 True 1478.000000 1478 92.816000 3549 4563 1 chr4A.!!$R1 1014
5 TraesCS7D01G053200 chr4A 701762114 701765763 3649 True 480.500000 739 85.099250 685 3875 4 chr4A.!!$R2 3190
6 TraesCS7D01G053200 chr7A 28458998 28462433 3435 True 580.333333 737 87.004333 685 3763 3 chr7A.!!$R4 3078
7 TraesCS7D01G053200 chr7A 28443334 28447719 4385 True 513.310000 1354 91.378900 25 4567 10 chr7A.!!$R3 4542
8 TraesCS7D01G053200 chr7A 28422895 28425675 2780 True 446.750000 800 85.619000 1188 3594 2 chr7A.!!$R2 2406
9 TraesCS7D01G053200 chr1D 485742488 485744712 2224 True 636.133333 1308 87.903000 690 3800 3 chr1D.!!$R1 3110

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 238 0.179108 CATTCTCGACCTCCGTTCCC 60.179 60.0 0.00 0.0 39.75 3.97 F
1370 2626 0.036765 TGGCATGTTCGGTCTACACC 60.037 55.0 0.00 0.0 39.69 4.16 F
2882 5977 0.263765 AGGGTATCGTGAAGGGCCTA 59.736 55.0 6.41 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 3397 1.139058 AGCTAAGGTGCATTCCGGTAG 59.861 52.381 0.0 0.0 34.99 3.18 R
3187 6294 1.402968 CCACAGGCTCAATTCCATTCG 59.597 52.381 0.0 0.0 0.00 3.34 R
3839 6967 0.875059 CTTCAGCCAAGAACCGAACC 59.125 55.000 0.0 0.0 33.29 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.281761 CAAAGGCCCAGTCAGCGT 60.282 61.111 0.00 0.00 0.00 5.07
18 19 2.032681 AAAGGCCCAGTCAGCGTC 59.967 61.111 0.00 0.00 0.00 5.19
19 20 2.520536 AAAGGCCCAGTCAGCGTCT 61.521 57.895 0.00 0.00 0.00 4.18
20 21 2.456287 AAAGGCCCAGTCAGCGTCTC 62.456 60.000 0.00 0.00 0.00 3.36
21 22 4.803426 GGCCCAGTCAGCGTCTCG 62.803 72.222 0.00 0.00 0.00 4.04
22 23 3.749064 GCCCAGTCAGCGTCTCGA 61.749 66.667 0.00 0.00 0.00 4.04
23 24 2.179517 CCCAGTCAGCGTCTCGAC 59.820 66.667 0.00 0.00 0.00 4.20
115 133 3.241177 GGAACGCCGCCGATATTC 58.759 61.111 0.00 0.00 38.29 1.75
121 139 1.079750 GCCGCCGATATTCCTCCTC 60.080 63.158 0.00 0.00 0.00 3.71
149 167 2.892640 CCGCCTCGAATCTCCACA 59.107 61.111 0.00 0.00 0.00 4.17
157 175 2.434884 AATCTCCACACGCGCAGG 60.435 61.111 5.73 5.76 0.00 4.85
158 176 3.240134 AATCTCCACACGCGCAGGT 62.240 57.895 5.73 0.54 0.00 4.00
214 232 2.107141 CGCCCATTCTCGACCTCC 59.893 66.667 0.00 0.00 0.00 4.30
220 238 0.179108 CATTCTCGACCTCCGTTCCC 60.179 60.000 0.00 0.00 39.75 3.97
221 239 1.664321 ATTCTCGACCTCCGTTCCCG 61.664 60.000 0.00 0.00 39.75 5.14
222 240 2.749044 CTCGACCTCCGTTCCCGA 60.749 66.667 0.00 0.00 39.75 5.14
223 241 3.048941 CTCGACCTCCGTTCCCGAC 62.049 68.421 0.00 0.00 39.75 4.79
281 305 4.080919 TGAGCTGCACCTGTATGTAATCTT 60.081 41.667 1.02 0.00 0.00 2.40
287 311 5.123227 GCACCTGTATGTAATCTTTGCCTA 58.877 41.667 0.00 0.00 0.00 3.93
293 317 5.989168 TGTATGTAATCTTTGCCTATCACCG 59.011 40.000 0.00 0.00 0.00 4.94
296 320 5.250200 TGTAATCTTTGCCTATCACCGTTT 58.750 37.500 0.00 0.00 0.00 3.60
306 330 4.258543 CCTATCACCGTTTCTGCCTTTTA 58.741 43.478 0.00 0.00 0.00 1.52
307 331 4.881850 CCTATCACCGTTTCTGCCTTTTAT 59.118 41.667 0.00 0.00 0.00 1.40
317 351 7.402640 CGTTTCTGCCTTTTATCTCTGTTATC 58.597 38.462 0.00 0.00 0.00 1.75
338 372 1.514678 GCATGTCAGGTGTTCGGCAA 61.515 55.000 0.00 0.00 0.00 4.52
363 397 3.386726 TGCCTATGAGCAATACCGTTACT 59.613 43.478 0.00 0.00 40.56 2.24
364 398 4.585581 TGCCTATGAGCAATACCGTTACTA 59.414 41.667 0.00 0.00 40.56 1.82
365 399 5.162075 GCCTATGAGCAATACCGTTACTAG 58.838 45.833 0.00 0.00 0.00 2.57
366 400 5.710984 CCTATGAGCAATACCGTTACTAGG 58.289 45.833 0.00 0.00 0.00 3.02
367 401 4.602340 ATGAGCAATACCGTTACTAGGG 57.398 45.455 0.00 0.00 35.40 3.53
369 403 3.635373 TGAGCAATACCGTTACTAGGGAG 59.365 47.826 0.00 0.00 33.46 4.30
371 405 2.101917 GCAATACCGTTACTAGGGAGCA 59.898 50.000 0.00 0.00 33.46 4.26
372 406 3.431207 GCAATACCGTTACTAGGGAGCAA 60.431 47.826 0.00 0.00 33.46 3.91
378 412 4.058817 CCGTTACTAGGGAGCAATTGATC 58.941 47.826 15.35 15.35 0.00 2.92
380 414 4.499188 CGTTACTAGGGAGCAATTGATCGA 60.499 45.833 16.93 4.74 0.00 3.59
384 418 1.556911 AGGGAGCAATTGATCGACAGT 59.443 47.619 16.93 0.00 0.00 3.55
390 424 4.938080 AGCAATTGATCGACAGTACTAGG 58.062 43.478 10.34 0.00 0.00 3.02
392 426 4.682787 CAATTGATCGACAGTACTAGGCA 58.317 43.478 0.00 0.00 0.00 4.75
395 429 2.426024 TGATCGACAGTACTAGGCAACC 59.574 50.000 0.00 0.00 37.17 3.77
401 435 0.613777 AGTACTAGGCAACCACCTGC 59.386 55.000 0.00 0.00 41.34 4.85
418 452 1.210931 GCTGTGTTGCACGCATGAT 59.789 52.632 0.00 0.00 38.03 2.45
419 453 1.068832 GCTGTGTTGCACGCATGATG 61.069 55.000 0.00 0.00 38.03 3.07
423 457 0.892814 TGTTGCACGCATGATGGGAA 60.893 50.000 16.77 0.00 34.12 3.97
446 480 0.723981 GCGCTGCCTTAGTTCTGAAG 59.276 55.000 0.00 0.00 0.00 3.02
464 498 7.750229 TCTGAAGTTGCTTGATTACATCTTT 57.250 32.000 0.00 0.00 0.00 2.52
475 509 9.525409 GCTTGATTACATCTTTGATTTATTGCT 57.475 29.630 0.00 0.00 0.00 3.91
487 521 4.158209 TGATTTATTGCTGACCACCACATG 59.842 41.667 0.00 0.00 0.00 3.21
490 524 1.174078 TTGCTGACCACCACATGCTG 61.174 55.000 0.00 0.00 0.00 4.41
492 526 0.321564 GCTGACCACCACATGCTGTA 60.322 55.000 0.00 0.00 0.00 2.74
507 544 7.758980 CCACATGCTGTATGATTAGAGTATCTC 59.241 40.741 12.78 0.00 41.76 2.75
508 545 8.302438 CACATGCTGTATGATTAGAGTATCTCA 58.698 37.037 12.78 0.00 41.76 3.27
538 575 2.408271 ATGGTAGACACATGTGCCTG 57.592 50.000 25.68 2.29 0.00 4.85
540 577 1.026718 GGTAGACACATGTGCCTGGC 61.027 60.000 25.68 12.87 0.00 4.85
543 580 0.251474 AGACACATGTGCCTGGCATT 60.251 50.000 26.22 12.97 41.91 3.56
544 581 1.004628 AGACACATGTGCCTGGCATTA 59.995 47.619 26.22 17.34 41.91 1.90
560 597 2.423185 GCATTACATTGCTGTGCCACTA 59.577 45.455 0.00 0.00 39.57 2.74
568 605 9.785982 TTACATTGCTGTGCCACTAATATTATA 57.214 29.630 0.00 0.00 36.79 0.98
569 606 8.868522 ACATTGCTGTGCCACTAATATTATAT 57.131 30.769 0.00 0.00 33.22 0.86
571 608 9.778993 CATTGCTGTGCCACTAATATTATATTC 57.221 33.333 0.18 0.00 0.00 1.75
573 610 8.777865 TGCTGTGCCACTAATATTATATTCTC 57.222 34.615 0.18 0.00 0.00 2.87
574 611 8.597167 TGCTGTGCCACTAATATTATATTCTCT 58.403 33.333 0.18 0.00 0.00 3.10
608 713 8.866956 GTTTTTCATCTTATTTGCATCTTCTGG 58.133 33.333 0.00 0.00 0.00 3.86
620 725 3.367703 GCATCTTCTGGGTGGATTTGTTG 60.368 47.826 0.00 0.00 0.00 3.33
621 726 2.875296 TCTTCTGGGTGGATTTGTTGG 58.125 47.619 0.00 0.00 0.00 3.77
622 727 1.895131 CTTCTGGGTGGATTTGTTGGG 59.105 52.381 0.00 0.00 0.00 4.12
623 728 1.153539 TCTGGGTGGATTTGTTGGGA 58.846 50.000 0.00 0.00 0.00 4.37
624 729 1.203001 TCTGGGTGGATTTGTTGGGAC 60.203 52.381 0.00 0.00 0.00 4.46
626 731 1.148867 TGGGTGGATTTGTTGGGACAT 59.851 47.619 0.00 0.00 39.30 3.06
627 732 2.380249 TGGGTGGATTTGTTGGGACATA 59.620 45.455 0.00 0.00 39.30 2.29
628 733 3.012274 TGGGTGGATTTGTTGGGACATAT 59.988 43.478 0.00 0.00 39.30 1.78
629 734 4.030216 GGGTGGATTTGTTGGGACATATT 58.970 43.478 0.00 0.00 39.30 1.28
630 735 5.205056 GGGTGGATTTGTTGGGACATATTA 58.795 41.667 0.00 0.00 39.30 0.98
631 736 5.301805 GGGTGGATTTGTTGGGACATATTAG 59.698 44.000 0.00 0.00 39.30 1.73
633 738 6.183360 GGTGGATTTGTTGGGACATATTAGTG 60.183 42.308 0.00 0.00 39.30 2.74
634 739 5.359576 TGGATTTGTTGGGACATATTAGTGC 59.640 40.000 0.00 0.00 39.30 4.40
635 740 5.359576 GGATTTGTTGGGACATATTAGTGCA 59.640 40.000 0.00 0.00 39.30 4.57
636 741 6.127479 GGATTTGTTGGGACATATTAGTGCAA 60.127 38.462 0.00 0.00 39.30 4.08
637 742 6.849085 TTTGTTGGGACATATTAGTGCAAT 57.151 33.333 0.00 0.00 39.30 3.56
638 743 7.946381 TTTGTTGGGACATATTAGTGCAATA 57.054 32.000 0.00 0.00 39.30 1.90
639 744 6.935741 TGTTGGGACATATTAGTGCAATAC 57.064 37.500 0.00 0.00 39.30 1.89
640 745 5.525745 TGTTGGGACATATTAGTGCAATACG 59.474 40.000 0.00 0.00 39.30 3.06
641 746 4.062293 TGGGACATATTAGTGCAATACGC 58.938 43.478 0.00 0.00 42.89 4.42
642 747 5.916650 TTGGGACATATTAGTGCAATACGCA 60.917 40.000 0.00 0.00 45.32 5.24
652 757 2.077155 GCAATACGCAATGTCTCGTG 57.923 50.000 0.00 0.00 41.79 4.35
653 758 1.393539 GCAATACGCAATGTCTCGTGT 59.606 47.619 0.00 0.00 41.79 4.49
654 759 2.159707 GCAATACGCAATGTCTCGTGTT 60.160 45.455 0.00 0.00 39.85 3.32
655 760 3.407252 CAATACGCAATGTCTCGTGTTG 58.593 45.455 9.14 9.14 45.76 3.33
656 761 2.425578 TACGCAATGTCTCGTGTTGA 57.574 45.000 0.00 0.00 39.46 3.18
657 762 1.577468 ACGCAATGTCTCGTGTTGAA 58.423 45.000 0.00 0.00 37.55 2.69
658 763 1.937223 ACGCAATGTCTCGTGTTGAAA 59.063 42.857 0.00 0.00 37.55 2.69
659 764 2.548057 ACGCAATGTCTCGTGTTGAAAT 59.452 40.909 0.00 0.00 37.55 2.17
660 765 3.743911 ACGCAATGTCTCGTGTTGAAATA 59.256 39.130 0.00 0.00 37.55 1.40
661 766 4.391830 ACGCAATGTCTCGTGTTGAAATAT 59.608 37.500 0.00 0.00 37.55 1.28
662 767 4.725280 CGCAATGTCTCGTGTTGAAATATG 59.275 41.667 0.00 0.00 0.00 1.78
663 768 4.496895 GCAATGTCTCGTGTTGAAATATGC 59.503 41.667 0.00 0.00 0.00 3.14
664 769 5.630061 CAATGTCTCGTGTTGAAATATGCA 58.370 37.500 0.00 0.00 0.00 3.96
665 770 5.878332 ATGTCTCGTGTTGAAATATGCAA 57.122 34.783 0.00 0.00 0.00 4.08
666 771 5.878332 TGTCTCGTGTTGAAATATGCAAT 57.122 34.783 0.00 0.00 0.00 3.56
667 772 5.630061 TGTCTCGTGTTGAAATATGCAATG 58.370 37.500 0.00 0.00 0.00 2.82
668 773 5.181056 TGTCTCGTGTTGAAATATGCAATGT 59.819 36.000 0.00 0.00 0.00 2.71
669 774 5.734498 GTCTCGTGTTGAAATATGCAATGTC 59.266 40.000 0.00 0.00 0.00 3.06
670 775 5.643348 TCTCGTGTTGAAATATGCAATGTCT 59.357 36.000 0.00 0.00 0.00 3.41
671 776 5.868257 TCGTGTTGAAATATGCAATGTCTC 58.132 37.500 0.00 0.00 0.00 3.36
672 777 5.411053 TCGTGTTGAAATATGCAATGTCTCA 59.589 36.000 0.00 0.00 0.00 3.27
673 778 6.093909 TCGTGTTGAAATATGCAATGTCTCAT 59.906 34.615 0.00 0.00 0.00 2.90
674 779 6.748658 CGTGTTGAAATATGCAATGTCTCATT 59.251 34.615 0.00 0.00 0.00 2.57
687 792 9.671279 TGCAATGTCTCATTCTTCTTAGATTAA 57.329 29.630 0.00 0.00 0.00 1.40
695 800 9.401058 CTCATTCTTCTTAGATTAAATGTGGGT 57.599 33.333 9.79 0.00 0.00 4.51
842 948 4.613143 GCATCCAGGCCCATGAAT 57.387 55.556 10.47 0.00 0.00 2.57
893 999 3.858868 GAAGACGCAGGCCGACACA 62.859 63.158 0.00 0.00 41.02 3.72
902 1008 3.637273 GCCGACACACCCTCCCTT 61.637 66.667 0.00 0.00 0.00 3.95
903 1009 2.288025 GCCGACACACCCTCCCTTA 61.288 63.158 0.00 0.00 0.00 2.69
1118 1227 8.839914 CATGTGTTTAATTGTTTGACTGTATCG 58.160 33.333 0.00 0.00 0.00 2.92
1139 1248 9.160576 GTATCGATCTGACTATTATATTCGCAC 57.839 37.037 0.00 0.00 0.00 5.34
1140 1249 6.552629 TCGATCTGACTATTATATTCGCACC 58.447 40.000 0.00 0.00 0.00 5.01
1258 1376 3.257469 TGTAATGAGGCAAGCTGAGAG 57.743 47.619 0.00 0.00 0.00 3.20
1276 1394 6.567687 TGAGAGTTCAAGAAACAAACACAA 57.432 33.333 0.00 0.00 40.56 3.33
1370 2626 0.036765 TGGCATGTTCGGTCTACACC 60.037 55.000 0.00 0.00 39.69 4.16
1393 2651 5.007332 CCCGAAGTATTGTGTTAACTATGCC 59.993 44.000 7.22 0.00 0.00 4.40
1443 2705 3.245087 TGCTTGGACCTGCAATTACCTTA 60.245 43.478 9.70 0.00 36.15 2.69
1468 2731 7.696992 TCAAAGTTTCTCAATGTAATACCCC 57.303 36.000 0.00 0.00 0.00 4.95
1469 2732 6.661805 TCAAAGTTTCTCAATGTAATACCCCC 59.338 38.462 0.00 0.00 0.00 5.40
1470 2733 6.402981 AAGTTTCTCAATGTAATACCCCCT 57.597 37.500 0.00 0.00 0.00 4.79
1471 2734 6.002653 AGTTTCTCAATGTAATACCCCCTC 57.997 41.667 0.00 0.00 0.00 4.30
1472 2735 5.104067 AGTTTCTCAATGTAATACCCCCTCC 60.104 44.000 0.00 0.00 0.00 4.30
1473 2736 4.015617 TCTCAATGTAATACCCCCTCCA 57.984 45.455 0.00 0.00 0.00 3.86
1474 2737 4.577096 TCTCAATGTAATACCCCCTCCAT 58.423 43.478 0.00 0.00 0.00 3.41
1475 2738 4.597507 TCTCAATGTAATACCCCCTCCATC 59.402 45.833 0.00 0.00 0.00 3.51
1476 2739 3.655777 TCAATGTAATACCCCCTCCATCC 59.344 47.826 0.00 0.00 0.00 3.51
1477 2740 2.127651 TGTAATACCCCCTCCATCCC 57.872 55.000 0.00 0.00 0.00 3.85
1478 2741 1.298693 TGTAATACCCCCTCCATCCCA 59.701 52.381 0.00 0.00 0.00 4.37
1479 2742 2.294604 TGTAATACCCCCTCCATCCCAA 60.295 50.000 0.00 0.00 0.00 4.12
1480 2743 2.009186 AATACCCCCTCCATCCCAAA 57.991 50.000 0.00 0.00 0.00 3.28
1481 2744 2.245425 ATACCCCCTCCATCCCAAAT 57.755 50.000 0.00 0.00 0.00 2.32
1482 2745 2.009186 TACCCCCTCCATCCCAAATT 57.991 50.000 0.00 0.00 0.00 1.82
1483 2746 2.009186 ACCCCCTCCATCCCAAATTA 57.991 50.000 0.00 0.00 0.00 1.40
1484 2747 2.302779 ACCCCCTCCATCCCAAATTAA 58.697 47.619 0.00 0.00 0.00 1.40
1485 2748 2.247372 ACCCCCTCCATCCCAAATTAAG 59.753 50.000 0.00 0.00 0.00 1.85
1486 2749 2.247372 CCCCCTCCATCCCAAATTAAGT 59.753 50.000 0.00 0.00 0.00 2.24
1487 2750 3.299503 CCCCTCCATCCCAAATTAAGTG 58.700 50.000 0.00 0.00 0.00 3.16
1488 2751 3.052944 CCCCTCCATCCCAAATTAAGTGA 60.053 47.826 0.00 0.00 0.00 3.41
1489 2752 3.954258 CCCTCCATCCCAAATTAAGTGAC 59.046 47.826 0.00 0.00 0.00 3.67
1490 2753 4.325344 CCCTCCATCCCAAATTAAGTGACT 60.325 45.833 0.00 0.00 0.00 3.41
1491 2754 4.884164 CCTCCATCCCAAATTAAGTGACTC 59.116 45.833 0.00 0.00 0.00 3.36
1492 2755 5.500234 CTCCATCCCAAATTAAGTGACTCA 58.500 41.667 0.00 0.00 0.00 3.41
1493 2756 5.886609 TCCATCCCAAATTAAGTGACTCAA 58.113 37.500 0.00 0.00 0.00 3.02
1494 2757 5.710099 TCCATCCCAAATTAAGTGACTCAAC 59.290 40.000 0.00 0.00 0.00 3.18
1495 2758 5.711976 CCATCCCAAATTAAGTGACTCAACT 59.288 40.000 0.00 0.00 0.00 3.16
1496 2759 6.209391 CCATCCCAAATTAAGTGACTCAACTT 59.791 38.462 0.00 0.00 42.89 2.66
1497 2760 7.255942 CCATCCCAAATTAAGTGACTCAACTTT 60.256 37.037 0.00 0.00 40.77 2.66
1498 2761 7.038154 TCCCAAATTAAGTGACTCAACTTTG 57.962 36.000 0.00 0.00 40.77 2.77
1499 2762 6.605594 TCCCAAATTAAGTGACTCAACTTTGT 59.394 34.615 8.71 0.00 40.77 2.83
1500 2763 7.776030 TCCCAAATTAAGTGACTCAACTTTGTA 59.224 33.333 8.71 0.00 40.77 2.41
1501 2764 7.860872 CCCAAATTAAGTGACTCAACTTTGTAC 59.139 37.037 8.71 0.00 40.77 2.90
1502 2765 8.621286 CCAAATTAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
1507 2770 9.880157 TTAAGTGACTCAACTTTGTACTAACTT 57.120 29.630 0.00 0.00 40.77 2.66
1508 2771 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
1509 2772 9.880157 AAGTGACTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
1510 2773 9.530633 AGTGACTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
1511 2774 9.310716 GTGACTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
1526 2789 9.310716 ACTAACTTTAGTACAAAGTTGAGTCAC 57.689 33.333 27.85 0.00 46.41 3.67
1527 2790 9.530633 CTAACTTTAGTACAAAGTTGAGTCACT 57.469 33.333 27.85 13.98 46.41 3.41
1528 2791 8.788325 AACTTTAGTACAAAGTTGAGTCACTT 57.212 30.769 23.48 0.00 45.58 3.16
1529 2792 9.880157 AACTTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 23.48 0.00 45.58 2.24
1535 2798 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
1536 2799 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
1537 2800 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
1538 2801 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1539 2802 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
1540 2803 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
1541 2804 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
1542 2805 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
1543 2806 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1544 2807 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
1545 2808 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1546 2809 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1547 2810 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1548 2811 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1585 3046 6.507023 CACTTGTTGGATTTCTGCTAAACTT 58.493 36.000 0.00 0.00 0.00 2.66
1606 3067 7.251704 ACTTCTGATACTCACAAAACAACAG 57.748 36.000 0.00 0.00 0.00 3.16
1627 3088 9.950680 CAACAGTTTTTGTCTACTTACATTGAT 57.049 29.630 0.00 0.00 39.73 2.57
1660 3121 7.065923 GGTACCACTTTATTCCAGTGATTTCTC 59.934 40.741 7.15 0.00 43.90 2.87
1661 3122 5.946377 ACCACTTTATTCCAGTGATTTCTCC 59.054 40.000 1.54 0.00 43.90 3.71
1663 3124 7.037586 ACCACTTTATTCCAGTGATTTCTCCTA 60.038 37.037 1.54 0.00 43.90 2.94
1717 3211 6.589135 TCATTGAGAGCAATCTGTGACATAT 58.411 36.000 0.00 0.00 42.66 1.78
1744 3238 8.361139 AGATAATCTTTAGATGGGTGTTCGTAG 58.639 37.037 0.00 0.00 34.49 3.51
1745 3239 6.540438 AATCTTTAGATGGGTGTTCGTAGA 57.460 37.500 0.00 0.00 34.49 2.59
1746 3240 5.320549 TCTTTAGATGGGTGTTCGTAGAC 57.679 43.478 0.00 0.00 34.32 2.59
1747 3241 5.014858 TCTTTAGATGGGTGTTCGTAGACT 58.985 41.667 0.00 0.00 34.32 3.24
1748 3242 4.978083 TTAGATGGGTGTTCGTAGACTC 57.022 45.455 0.00 0.00 34.32 3.36
1749 3243 1.743958 AGATGGGTGTTCGTAGACTCG 59.256 52.381 0.00 0.00 34.32 4.18
1750 3244 1.471684 GATGGGTGTTCGTAGACTCGT 59.528 52.381 0.00 0.00 34.32 4.18
1801 3301 7.935338 ATTTAAGTGAAGCATCTTGTGTTTG 57.065 32.000 0.00 0.00 30.81 2.93
1840 3340 5.239525 ACAAAAACGAGAGAAAAGATGGGAG 59.760 40.000 0.00 0.00 0.00 4.30
1845 3345 3.307762 CGAGAGAAAAGATGGGAGGGTTT 60.308 47.826 0.00 0.00 0.00 3.27
1896 3397 6.401367 GCATTTTGCATGTTACATTGGTTCTC 60.401 38.462 0.00 0.00 44.26 2.87
1909 3410 1.653151 GGTTCTCTACCGGAATGCAC 58.347 55.000 9.46 0.00 37.12 4.57
1910 3411 1.653151 GTTCTCTACCGGAATGCACC 58.347 55.000 9.46 0.00 0.00 5.01
1911 3412 1.207329 GTTCTCTACCGGAATGCACCT 59.793 52.381 9.46 0.00 0.00 4.00
1912 3413 1.568504 TCTCTACCGGAATGCACCTT 58.431 50.000 9.46 0.00 0.00 3.50
1913 3414 2.742348 TCTCTACCGGAATGCACCTTA 58.258 47.619 9.46 0.00 0.00 2.69
1914 3415 2.693591 TCTCTACCGGAATGCACCTTAG 59.306 50.000 9.46 0.00 0.00 2.18
1915 3416 1.138266 TCTACCGGAATGCACCTTAGC 59.862 52.381 9.46 0.00 0.00 3.09
1916 3417 1.139058 CTACCGGAATGCACCTTAGCT 59.861 52.381 9.46 0.00 34.99 3.32
1917 3418 0.328258 ACCGGAATGCACCTTAGCTT 59.672 50.000 9.46 0.00 34.99 3.74
1918 3419 1.017387 CCGGAATGCACCTTAGCTTC 58.983 55.000 0.00 0.00 34.99 3.86
1919 3420 1.407437 CCGGAATGCACCTTAGCTTCT 60.407 52.381 0.00 0.00 34.99 2.85
1920 3421 2.359900 CGGAATGCACCTTAGCTTCTT 58.640 47.619 0.00 0.00 34.99 2.52
2315 3816 6.855836 TGATTGTTCTGGATCTTTGTATTGC 58.144 36.000 0.00 0.00 0.00 3.56
2316 3817 5.643379 TTGTTCTGGATCTTTGTATTGCC 57.357 39.130 0.00 0.00 0.00 4.52
2317 3818 4.661222 TGTTCTGGATCTTTGTATTGCCA 58.339 39.130 0.00 0.00 0.00 4.92
2353 3856 9.606631 CTTACTAGCATAGAAGAACTGGAAATT 57.393 33.333 0.00 0.00 42.77 1.82
2364 3867 7.706607 AGAAGAACTGGAAATTAAAACAACTGC 59.293 33.333 0.00 0.00 0.00 4.40
2365 3868 6.872920 AGAACTGGAAATTAAAACAACTGCA 58.127 32.000 0.00 0.00 0.00 4.41
2366 3869 6.756542 AGAACTGGAAATTAAAACAACTGCAC 59.243 34.615 0.00 0.00 0.00 4.57
2367 3870 6.220726 ACTGGAAATTAAAACAACTGCACT 57.779 33.333 0.00 0.00 0.00 4.40
2368 3871 6.042143 ACTGGAAATTAAAACAACTGCACTG 58.958 36.000 0.00 0.00 0.00 3.66
2369 3872 6.127479 ACTGGAAATTAAAACAACTGCACTGA 60.127 34.615 0.00 0.00 0.00 3.41
2370 3873 6.815089 TGGAAATTAAAACAACTGCACTGAT 58.185 32.000 0.00 0.00 0.00 2.90
2420 3924 3.118038 TCCGGCTTAGAGCAAATTACCAT 60.118 43.478 0.00 0.00 44.75 3.55
2464 3969 7.612668 AACTTTTGATCTCAGATCTGTCATG 57.387 36.000 21.92 13.04 0.00 3.07
2476 3981 6.051074 CAGATCTGTCATGGTGCTATGTTTA 58.949 40.000 14.95 0.00 0.00 2.01
2565 4072 5.877012 TCTTCTGTGTCTGAGGAATATTTGC 59.123 40.000 0.00 0.00 0.00 3.68
2575 4082 7.380602 GTCTGAGGAATATTTGCAATTATGTGC 59.619 37.037 13.18 9.44 45.15 4.57
2759 4567 4.233789 GCACAATCCGCATAAAGAACAAA 58.766 39.130 0.00 0.00 0.00 2.83
2839 4647 0.321564 TGCCATTTCTGTGGAGACGG 60.322 55.000 0.00 0.00 42.02 4.79
2882 5977 0.263765 AGGGTATCGTGAAGGGCCTA 59.736 55.000 6.41 0.00 0.00 3.93
2901 5996 4.530875 CCTATTGTCATCAAGAAAGCCCT 58.469 43.478 0.00 0.00 36.97 5.19
2986 6090 1.815003 GCATTCTGTAACAGCAGCCTT 59.185 47.619 0.00 0.00 36.49 4.35
3062 6169 7.573968 AGGTAATGTGCCAAAATCTAATCTC 57.426 36.000 0.00 0.00 0.00 2.75
3117 6224 6.817765 GAGTTTTCTCAATGGTGGATTGTA 57.182 37.500 0.00 0.00 45.53 2.41
3130 6237 4.710375 GGTGGATTGTAGTCTGTTAGGAGA 59.290 45.833 0.00 0.00 0.00 3.71
3143 6250 5.129980 TCTGTTAGGAGATGCACATGAAGAT 59.870 40.000 0.00 0.00 0.00 2.40
3164 6271 7.636150 AGATATCCCACAGAAAATTGAAGTG 57.364 36.000 0.00 0.00 0.00 3.16
3187 6294 6.747280 GTGGAAAGCACACATGATAAATGTAC 59.253 38.462 0.00 0.00 38.67 2.90
3205 6312 2.496899 ACGAATGGAATTGAGCCTGT 57.503 45.000 0.00 0.00 36.07 4.00
3220 6327 3.893326 GCCTGTGGCTTCCAAAAATAT 57.107 42.857 0.73 0.00 46.69 1.28
3236 6343 8.642432 TCCAAAAATATTACAACATGTGAACCA 58.358 29.630 0.00 0.00 0.00 3.67
3263 6370 3.822735 TCACTTCCCAAGCAGAATTTCTG 59.177 43.478 19.92 19.92 46.90 3.02
3326 6433 1.795286 GAAGTGACTGCGCATATAGGC 59.205 52.381 12.24 0.53 0.00 3.93
3336 6443 2.759191 CGCATATAGGCTCAGCAGAAA 58.241 47.619 7.89 0.00 0.00 2.52
3344 6451 3.225104 AGGCTCAGCAGAAACATTGAAA 58.775 40.909 0.00 0.00 0.00 2.69
3376 6483 2.547211 CACTGAACAGCAAAGGACAGAG 59.453 50.000 0.00 0.00 0.00 3.35
3393 6500 3.118408 ACAGAGTTGTGGTTCAGTTGCTA 60.118 43.478 0.00 0.00 35.83 3.49
3427 6534 5.560724 TGGAAGTTATAGCAAGTCAGCTTT 58.439 37.500 0.00 0.00 43.70 3.51
3611 6726 2.169832 TCTTTACTGTCAGCACCTGC 57.830 50.000 0.00 0.00 42.49 4.85
3785 6913 1.831580 AGGCTTGAAGATTCACCAGC 58.168 50.000 9.71 9.71 39.27 4.85
3787 6915 1.160137 GCTTGAAGATTCACCAGCGT 58.840 50.000 0.00 0.00 36.83 5.07
3839 6967 7.416154 TGTGAAAGGTAAAGTCAAATACTCG 57.584 36.000 0.00 0.00 37.50 4.18
3958 7087 8.138365 TCTGTATACATTTCGGTTGCTAATTC 57.862 34.615 5.91 0.00 0.00 2.17
4074 7203 9.079833 CATACTCATATTTTTGGCACTTCTTTG 57.920 33.333 0.00 0.00 0.00 2.77
4089 7218 2.536066 TCTTTGGCTGCTCTGGTACTA 58.464 47.619 0.00 0.00 0.00 1.82
4090 7219 2.903784 TCTTTGGCTGCTCTGGTACTAA 59.096 45.455 0.00 0.00 0.00 2.24
4133 7265 1.005215 CAGTTCTTGGGGCATCTCCTT 59.995 52.381 0.00 0.00 34.39 3.36
4378 7584 3.149196 CTGGAACTGCCACTTATGTTGT 58.851 45.455 0.00 0.00 43.33 3.32
4403 7609 1.195115 TCTAGCTTTGAGGTGCCGAT 58.805 50.000 0.00 0.00 0.00 4.18
4481 7688 8.733458 CATAATTTTGATCCAAGTCTTGACTCA 58.267 33.333 14.42 12.39 0.00 3.41
4510 7718 1.202830 ACAGGACAATTACACCGGCAA 60.203 47.619 0.00 0.00 0.00 4.52
4567 7780 7.172703 CACAACTCTAGGTTTAGAAAATCGGTT 59.827 37.037 0.00 0.00 35.55 4.44
4568 7781 7.172703 ACAACTCTAGGTTTAGAAAATCGGTTG 59.827 37.037 0.00 0.00 38.83 3.77
4569 7782 6.171213 ACTCTAGGTTTAGAAAATCGGTTGG 58.829 40.000 0.00 0.00 35.55 3.77
4570 7783 5.493809 TCTAGGTTTAGAAAATCGGTTGGG 58.506 41.667 0.00 0.00 33.01 4.12
4571 7784 2.823747 AGGTTTAGAAAATCGGTTGGGC 59.176 45.455 0.00 0.00 0.00 5.36
4572 7785 2.823747 GGTTTAGAAAATCGGTTGGGCT 59.176 45.455 0.00 0.00 0.00 5.19
4573 7786 4.011698 GGTTTAGAAAATCGGTTGGGCTA 58.988 43.478 0.00 0.00 0.00 3.93
4574 7787 4.460034 GGTTTAGAAAATCGGTTGGGCTAA 59.540 41.667 0.00 0.00 0.00 3.09
4575 7788 5.047872 GGTTTAGAAAATCGGTTGGGCTAAA 60.048 40.000 6.55 6.55 0.00 1.85
4576 7789 6.448852 GTTTAGAAAATCGGTTGGGCTAAAA 58.551 36.000 10.39 0.00 30.88 1.52
4577 7790 6.651975 TTAGAAAATCGGTTGGGCTAAAAA 57.348 33.333 0.00 0.00 0.00 1.94
4578 7791 5.738619 AGAAAATCGGTTGGGCTAAAAAT 57.261 34.783 0.00 0.00 0.00 1.82
4579 7792 5.720202 AGAAAATCGGTTGGGCTAAAAATC 58.280 37.500 0.00 0.00 0.00 2.17
4580 7793 5.245075 AGAAAATCGGTTGGGCTAAAAATCA 59.755 36.000 0.00 0.00 0.00 2.57
4581 7794 4.718940 AATCGGTTGGGCTAAAAATCAG 57.281 40.909 0.00 0.00 0.00 2.90
4582 7795 3.149005 TCGGTTGGGCTAAAAATCAGT 57.851 42.857 0.00 0.00 0.00 3.41
4583 7796 3.078837 TCGGTTGGGCTAAAAATCAGTC 58.921 45.455 0.00 0.00 0.00 3.51
4584 7797 2.159572 CGGTTGGGCTAAAAATCAGTCG 60.160 50.000 0.00 0.00 0.00 4.18
4585 7798 3.078837 GGTTGGGCTAAAAATCAGTCGA 58.921 45.455 0.00 0.00 0.00 4.20
4586 7799 3.119955 GGTTGGGCTAAAAATCAGTCGAC 60.120 47.826 7.70 7.70 0.00 4.20
4587 7800 3.695830 TGGGCTAAAAATCAGTCGACT 57.304 42.857 13.58 13.58 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.281761 ACGCTGACTGGGCCTTTG 60.282 61.111 4.53 0.00 0.00 2.77
1 2 2.032681 GACGCTGACTGGGCCTTT 59.967 61.111 4.53 0.00 0.00 3.11
2 3 2.925170 AGACGCTGACTGGGCCTT 60.925 61.111 4.53 0.00 0.00 4.35
3 4 3.386237 GAGACGCTGACTGGGCCT 61.386 66.667 4.53 0.00 0.00 5.19
4 5 4.803426 CGAGACGCTGACTGGGCC 62.803 72.222 0.00 0.00 0.00 5.80
5 6 3.749064 TCGAGACGCTGACTGGGC 61.749 66.667 0.00 0.00 0.00 5.36
6 7 2.179517 GTCGAGACGCTGACTGGG 59.820 66.667 0.00 0.00 32.37 4.45
7 8 2.179517 GGTCGAGACGCTGACTGG 59.820 66.667 0.00 0.00 35.45 4.00
8 9 1.442857 GTGGTCGAGACGCTGACTG 60.443 63.158 0.00 0.00 35.45 3.51
9 10 1.601197 AGTGGTCGAGACGCTGACT 60.601 57.895 2.59 0.00 35.45 3.41
10 11 1.442857 CAGTGGTCGAGACGCTGAC 60.443 63.158 20.27 3.92 37.25 3.51
11 12 2.954611 CAGTGGTCGAGACGCTGA 59.045 61.111 20.27 0.00 37.25 4.26
12 13 2.807045 GCAGTGGTCGAGACGCTG 60.807 66.667 20.49 20.49 37.74 5.18
13 14 2.983930 GAGCAGTGGTCGAGACGCT 61.984 63.158 6.57 11.17 0.00 5.07
14 15 2.505118 GAGCAGTGGTCGAGACGC 60.505 66.667 6.57 0.00 0.00 5.19
15 16 1.154131 CTGAGCAGTGGTCGAGACG 60.154 63.158 17.03 0.29 32.15 4.18
16 17 0.598562 TTCTGAGCAGTGGTCGAGAC 59.401 55.000 17.03 0.00 32.15 3.36
17 18 0.884514 CTTCTGAGCAGTGGTCGAGA 59.115 55.000 17.03 16.32 32.15 4.04
18 19 3.415237 CTTCTGAGCAGTGGTCGAG 57.585 57.895 17.03 14.53 32.15 4.04
100 118 1.300697 GAGGAATATCGGCGGCGTT 60.301 57.895 31.06 24.88 0.00 4.84
101 119 2.338984 GAGGAATATCGGCGGCGT 59.661 61.111 31.06 19.95 0.00 5.68
104 122 1.213013 CGAGGAGGAATATCGGCGG 59.787 63.158 7.21 0.00 32.93 6.13
112 130 2.490217 CGTGCGTCGAGGAGGAAT 59.510 61.111 9.75 0.00 42.86 3.01
140 158 2.434884 CCTGCGCGTGTGGAGATT 60.435 61.111 8.43 0.00 0.00 2.40
141 159 3.695606 ACCTGCGCGTGTGGAGAT 61.696 61.111 18.04 0.00 0.00 2.75
157 175 4.899239 CAGGATCGAGGCGGCCAC 62.899 72.222 23.09 14.72 0.00 5.01
190 208 2.185867 GAGAATGGGCGGCGTACA 59.814 61.111 9.37 8.57 0.00 2.90
237 255 2.428085 GGGAGAGGAAGAGGTCGGC 61.428 68.421 0.00 0.00 0.00 5.54
243 261 4.766272 TCACGGGGAGAGGAAGAG 57.234 61.111 0.00 0.00 0.00 2.85
281 305 1.448985 GCAGAAACGGTGATAGGCAA 58.551 50.000 0.00 0.00 0.00 4.52
287 311 4.589908 AGATAAAAGGCAGAAACGGTGAT 58.410 39.130 0.00 0.00 0.00 3.06
293 317 8.394121 CAGATAACAGAGATAAAAGGCAGAAAC 58.606 37.037 0.00 0.00 0.00 2.78
296 320 6.051717 GCAGATAACAGAGATAAAAGGCAGA 58.948 40.000 0.00 0.00 0.00 4.26
317 351 1.915614 GCCGAACACCTGACATGCAG 61.916 60.000 9.40 9.40 44.49 4.41
338 372 3.820557 ACGGTATTGCTCATAGGCATTT 58.179 40.909 0.00 0.00 42.09 2.32
355 389 2.835764 TCAATTGCTCCCTAGTAACGGT 59.164 45.455 0.00 0.00 29.52 4.83
361 395 2.766263 TGTCGATCAATTGCTCCCTAGT 59.234 45.455 0.00 0.00 0.00 2.57
363 397 2.766263 ACTGTCGATCAATTGCTCCCTA 59.234 45.455 0.00 0.00 0.00 3.53
364 398 1.556911 ACTGTCGATCAATTGCTCCCT 59.443 47.619 0.00 0.00 0.00 4.20
365 399 2.029838 ACTGTCGATCAATTGCTCCC 57.970 50.000 0.00 0.00 0.00 4.30
366 400 3.786635 AGTACTGTCGATCAATTGCTCC 58.213 45.455 0.00 0.00 0.00 4.70
367 401 4.979197 CCTAGTACTGTCGATCAATTGCTC 59.021 45.833 5.39 0.00 0.00 4.26
369 403 3.491267 GCCTAGTACTGTCGATCAATTGC 59.509 47.826 5.39 0.00 0.00 3.56
371 405 5.109903 GTTGCCTAGTACTGTCGATCAATT 58.890 41.667 5.39 0.00 0.00 2.32
372 406 4.441634 GGTTGCCTAGTACTGTCGATCAAT 60.442 45.833 5.39 0.00 0.00 2.57
378 412 1.403780 GGTGGTTGCCTAGTACTGTCG 60.404 57.143 5.39 0.00 0.00 4.35
380 414 1.623811 CAGGTGGTTGCCTAGTACTGT 59.376 52.381 5.39 0.00 37.04 3.55
384 418 0.613260 CAGCAGGTGGTTGCCTAGTA 59.387 55.000 0.00 0.00 45.18 1.82
401 435 0.455464 CCATCATGCGTGCAACACAG 60.455 55.000 0.00 0.00 35.74 3.66
418 452 1.909459 TAAGGCAGCGCATCTTCCCA 61.909 55.000 11.47 0.00 0.00 4.37
419 453 1.153168 TAAGGCAGCGCATCTTCCC 60.153 57.895 11.47 0.00 0.00 3.97
423 457 0.539051 AGAACTAAGGCAGCGCATCT 59.461 50.000 11.47 0.00 0.00 2.90
429 463 2.095516 GCAACTTCAGAACTAAGGCAGC 60.096 50.000 0.00 0.00 0.00 5.25
464 498 3.760738 TGTGGTGGTCAGCAATAAATCA 58.239 40.909 4.33 0.00 40.82 2.57
473 507 3.271014 CAGCATGTGGTGGTCAGC 58.729 61.111 4.35 0.00 39.67 4.26
487 521 7.135089 TCGTGAGATACTCTAATCATACAGC 57.865 40.000 0.00 0.00 33.31 4.40
507 544 8.020819 ACATGTGTCTACCATTTATTTTTCGTG 58.979 33.333 0.00 0.00 0.00 4.35
508 545 8.020819 CACATGTGTCTACCATTTATTTTTCGT 58.979 33.333 18.03 0.00 0.00 3.85
540 577 4.700268 TTAGTGGCACAGCAATGTAATG 57.300 40.909 21.41 0.00 41.80 1.90
543 580 9.958180 ATATAATATTAGTGGCACAGCAATGTA 57.042 29.630 21.41 12.00 41.80 2.29
544 581 8.868522 ATATAATATTAGTGGCACAGCAATGT 57.131 30.769 21.41 11.05 41.80 2.71
608 713 5.891551 ACTAATATGTCCCAACAAATCCACC 59.108 40.000 0.00 0.00 39.30 4.61
620 725 4.663636 GCGTATTGCACTAATATGTCCC 57.336 45.455 0.00 0.00 45.45 4.46
633 738 1.393539 ACACGAGACATTGCGTATTGC 59.606 47.619 0.00 0.00 46.70 3.56
634 739 3.122780 TCAACACGAGACATTGCGTATTG 59.877 43.478 0.00 0.00 43.81 1.90
635 740 3.322369 TCAACACGAGACATTGCGTATT 58.678 40.909 0.00 0.00 38.92 1.89
636 741 2.954316 TCAACACGAGACATTGCGTAT 58.046 42.857 0.00 0.00 38.92 3.06
637 742 2.425578 TCAACACGAGACATTGCGTA 57.574 45.000 0.00 0.00 38.92 4.42
638 743 1.577468 TTCAACACGAGACATTGCGT 58.423 45.000 0.00 0.00 42.11 5.24
639 744 2.661504 TTTCAACACGAGACATTGCG 57.338 45.000 0.00 0.00 0.00 4.85
640 745 4.496895 GCATATTTCAACACGAGACATTGC 59.503 41.667 0.00 0.00 0.00 3.56
641 746 5.630061 TGCATATTTCAACACGAGACATTG 58.370 37.500 0.00 0.00 0.00 2.82
642 747 5.878332 TGCATATTTCAACACGAGACATT 57.122 34.783 0.00 0.00 0.00 2.71
643 748 5.878332 TTGCATATTTCAACACGAGACAT 57.122 34.783 0.00 0.00 0.00 3.06
644 749 5.181056 ACATTGCATATTTCAACACGAGACA 59.819 36.000 0.00 0.00 0.00 3.41
645 750 5.631026 ACATTGCATATTTCAACACGAGAC 58.369 37.500 0.00 0.00 0.00 3.36
646 751 5.643348 AGACATTGCATATTTCAACACGAGA 59.357 36.000 0.00 0.00 0.00 4.04
647 752 5.872635 AGACATTGCATATTTCAACACGAG 58.127 37.500 0.00 0.00 0.00 4.18
648 753 5.411053 TGAGACATTGCATATTTCAACACGA 59.589 36.000 0.00 0.00 0.00 4.35
649 754 5.630061 TGAGACATTGCATATTTCAACACG 58.370 37.500 0.00 0.00 0.00 4.49
650 755 7.972277 AGAATGAGACATTGCATATTTCAACAC 59.028 33.333 1.64 0.00 0.00 3.32
651 756 8.058667 AGAATGAGACATTGCATATTTCAACA 57.941 30.769 1.64 0.00 0.00 3.33
652 757 8.922058 AAGAATGAGACATTGCATATTTCAAC 57.078 30.769 1.64 0.00 0.00 3.18
653 758 8.963725 AGAAGAATGAGACATTGCATATTTCAA 58.036 29.630 1.64 0.00 0.00 2.69
654 759 8.515695 AGAAGAATGAGACATTGCATATTTCA 57.484 30.769 1.64 0.00 0.00 2.69
657 762 9.842775 TCTAAGAAGAATGAGACATTGCATATT 57.157 29.630 1.64 0.00 0.00 1.28
659 764 9.842775 AATCTAAGAAGAATGAGACATTGCATA 57.157 29.630 1.64 0.00 34.73 3.14
660 765 8.749026 AATCTAAGAAGAATGAGACATTGCAT 57.251 30.769 1.64 0.00 34.73 3.96
661 766 9.671279 TTAATCTAAGAAGAATGAGACATTGCA 57.329 29.630 1.64 0.00 34.73 4.08
668 773 9.618890 CCCACATTTAATCTAAGAAGAATGAGA 57.381 33.333 0.00 0.00 34.73 3.27
669 774 9.401058 ACCCACATTTAATCTAAGAAGAATGAG 57.599 33.333 0.00 0.00 34.73 2.90
786 892 1.000896 CCGGCTTCTTCCCCATGTT 60.001 57.895 0.00 0.00 0.00 2.71
1118 1227 9.856488 TTAAGGTGCGAATATAATAGTCAGATC 57.144 33.333 0.00 0.00 0.00 2.75
1163 1272 3.583806 TGGCACAAAGTTGAACACAAAG 58.416 40.909 0.00 0.00 31.92 2.77
1370 2626 5.276678 CGGCATAGTTAACACAATACTTCGG 60.277 44.000 8.61 0.00 0.00 4.30
1408 2670 2.562298 GTCCAAGCAAACATGGATCCAA 59.438 45.455 20.67 1.96 44.98 3.53
1443 2705 7.342026 GGGGGTATTACATTGAGAAACTTTGAT 59.658 37.037 0.00 0.00 0.00 2.57
1465 2728 2.247372 ACTTAATTTGGGATGGAGGGGG 59.753 50.000 0.00 0.00 0.00 5.40
1466 2729 3.052944 TCACTTAATTTGGGATGGAGGGG 60.053 47.826 0.00 0.00 0.00 4.79
1467 2730 3.954258 GTCACTTAATTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
1468 2731 4.860022 AGTCACTTAATTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
1469 2732 5.500234 TGAGTCACTTAATTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
1470 2733 5.512942 TGAGTCACTTAATTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
1471 2734 5.711976 AGTTGAGTCACTTAATTTGGGATGG 59.288 40.000 0.00 0.00 0.00 3.51
1472 2735 6.824305 AGTTGAGTCACTTAATTTGGGATG 57.176 37.500 0.00 0.00 0.00 3.51
1473 2736 7.287696 ACAAAGTTGAGTCACTTAATTTGGGAT 59.712 33.333 16.35 0.00 35.87 3.85
1474 2737 6.605594 ACAAAGTTGAGTCACTTAATTTGGGA 59.394 34.615 16.35 0.00 35.87 4.37
1475 2738 6.805713 ACAAAGTTGAGTCACTTAATTTGGG 58.194 36.000 16.35 4.33 35.87 4.12
1476 2739 8.621286 AGTACAAAGTTGAGTCACTTAATTTGG 58.379 33.333 16.35 5.04 35.87 3.28
1481 2744 9.880157 AAGTTAGTACAAAGTTGAGTCACTTAA 57.120 29.630 0.00 0.00 35.87 1.85
1482 2745 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
1483 2746 8.788325 AAAGTTAGTACAAAGTTGAGTCACTT 57.212 30.769 0.00 0.00 38.74 3.16
1484 2747 9.530633 CTAAAGTTAGTACAAAGTTGAGTCACT 57.469 33.333 0.00 0.00 0.00 3.41
1485 2748 9.310716 ACTAAAGTTAGTACAAAGTTGAGTCAC 57.689 33.333 1.81 0.00 41.92 3.67
1500 2763 9.310716 GTGACTCAACTTTGTACTAAAGTTAGT 57.689 33.333 23.56 23.28 45.57 2.24
1501 2764 9.530633 AGTGACTCAACTTTGTACTAAAGTTAG 57.469 33.333 23.56 21.61 45.57 2.34
1502 2765 9.880157 AAGTGACTCAACTTTGTACTAAAGTTA 57.120 29.630 23.56 15.88 45.57 2.24
1509 2772 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
1510 2773 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
1511 2774 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
1512 2775 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
1513 2776 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
1514 2777 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
1515 2778 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1516 2779 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1517 2780 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1518 2781 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1519 2782 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
1520 2783 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
1521 2784 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
1522 2785 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
1523 2786 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
1524 2787 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1525 2788 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1526 2789 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1527 2790 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1528 2791 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1529 2792 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1530 2793 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1531 2794 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
1532 2795 2.178325 TGATATACTCCCTCCGTCCCAA 59.822 50.000 0.00 0.00 0.00 4.12
1533 2796 1.784593 TGATATACTCCCTCCGTCCCA 59.215 52.381 0.00 0.00 0.00 4.37
1534 2797 2.225066 ACTGATATACTCCCTCCGTCCC 60.225 54.545 0.00 0.00 0.00 4.46
1535 2798 3.157750 ACTGATATACTCCCTCCGTCC 57.842 52.381 0.00 0.00 0.00 4.79
1536 2799 4.142790 TGAACTGATATACTCCCTCCGTC 58.857 47.826 0.00 0.00 0.00 4.79
1537 2800 4.180377 TGAACTGATATACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
1538 2801 4.559704 GCTTGAACTGATATACTCCCTCCG 60.560 50.000 0.00 0.00 0.00 4.63
1539 2802 4.345257 TGCTTGAACTGATATACTCCCTCC 59.655 45.833 0.00 0.00 0.00 4.30
1540 2803 5.069781 AGTGCTTGAACTGATATACTCCCTC 59.930 44.000 0.00 0.00 0.00 4.30
1541 2804 4.965532 AGTGCTTGAACTGATATACTCCCT 59.034 41.667 0.00 0.00 0.00 4.20
1542 2805 5.283457 AGTGCTTGAACTGATATACTCCC 57.717 43.478 0.00 0.00 0.00 4.30
1543 2806 6.109359 ACAAGTGCTTGAACTGATATACTCC 58.891 40.000 17.62 0.00 42.93 3.85
1544 2807 7.413438 CCAACAAGTGCTTGAACTGATATACTC 60.413 40.741 17.62 0.00 42.93 2.59
1545 2808 6.372659 CCAACAAGTGCTTGAACTGATATACT 59.627 38.462 17.62 0.00 42.93 2.12
1546 2809 6.371548 TCCAACAAGTGCTTGAACTGATATAC 59.628 38.462 17.62 0.00 42.93 1.47
1547 2810 6.472016 TCCAACAAGTGCTTGAACTGATATA 58.528 36.000 17.62 0.00 42.93 0.86
1548 2811 5.316167 TCCAACAAGTGCTTGAACTGATAT 58.684 37.500 17.62 0.00 42.93 1.63
1585 3046 7.624360 AAACTGTTGTTTTGTGAGTATCAGA 57.376 32.000 0.00 0.00 44.72 3.27
1627 3088 6.045813 ACTGGAATAAAGTGGTACCCCTTAAA 59.954 38.462 10.27 2.51 0.00 1.52
1660 3121 9.956720 CATGTTTTTCAAAGCTATAGGAATAGG 57.043 33.333 1.04 0.00 36.37 2.57
1717 3211 8.246430 ACGAACACCCATCTAAAGATTATCTA 57.754 34.615 0.00 0.00 31.21 1.98
1767 3265 6.804534 TGCTTCACTTAAATTTGTTGTTCG 57.195 33.333 0.00 0.00 0.00 3.95
1801 3301 7.694784 TCTCGTTTTTGTGTAGTTCATTGTTTC 59.305 33.333 0.00 0.00 0.00 2.78
1896 3397 1.139058 AGCTAAGGTGCATTCCGGTAG 59.861 52.381 0.00 0.00 34.99 3.18
2276 3777 3.019564 ACAATCAGCTAAGGTGCATTCC 58.980 45.455 0.00 0.00 34.99 3.01
2277 3778 4.397417 AGAACAATCAGCTAAGGTGCATTC 59.603 41.667 0.00 0.00 34.99 2.67
2353 3856 5.356882 GCAGTATCAGTGCAGTTGTTTTA 57.643 39.130 0.00 0.00 43.79 1.52
2363 3866 4.813161 ACATTATCAGTGCAGTATCAGTGC 59.187 41.667 0.00 0.00 44.57 4.40
2364 3867 6.314648 ACAACATTATCAGTGCAGTATCAGTG 59.685 38.462 0.00 0.00 38.44 3.66
2365 3868 6.409704 ACAACATTATCAGTGCAGTATCAGT 58.590 36.000 0.00 0.00 0.00 3.41
2366 3869 6.915544 ACAACATTATCAGTGCAGTATCAG 57.084 37.500 0.00 0.00 0.00 2.90
2367 3870 8.203485 TCATACAACATTATCAGTGCAGTATCA 58.797 33.333 0.00 0.00 0.00 2.15
2368 3871 8.593492 TCATACAACATTATCAGTGCAGTATC 57.407 34.615 0.00 0.00 0.00 2.24
2369 3872 8.206867 ACTCATACAACATTATCAGTGCAGTAT 58.793 33.333 0.00 0.00 0.00 2.12
2370 3873 7.555965 ACTCATACAACATTATCAGTGCAGTA 58.444 34.615 0.00 0.00 0.00 2.74
2420 3924 7.681939 AAGTTAACAAGACAGACAAACTTCA 57.318 32.000 8.61 0.00 31.89 3.02
2545 4052 5.885230 TTGCAAATATTCCTCAGACACAG 57.115 39.130 0.00 0.00 0.00 3.66
2565 4072 6.549912 TGCTATGAGCTAAGCACATAATTG 57.450 37.500 12.51 0.00 43.56 2.32
2575 4082 4.124970 TGAATGTGCTGCTATGAGCTAAG 58.875 43.478 0.00 0.00 42.97 2.18
2696 4504 5.824904 AGATTGATTCACACCTGCAATAC 57.175 39.130 0.00 0.00 30.06 1.89
2839 4647 2.159000 CCACTACCCCGTATCAGGTTTC 60.159 54.545 0.00 0.00 37.59 2.78
2882 5977 5.105595 GCTAAAGGGCTTTCTTGATGACAAT 60.106 40.000 0.00 0.00 33.55 2.71
2901 5996 5.973899 TTCAACATTATGCTGGTGCTAAA 57.026 34.783 0.00 0.00 40.48 1.85
3029 6133 6.656632 TTTGGCACATTACCTTGTTTATCA 57.343 33.333 0.00 0.00 39.30 2.15
3062 6169 5.636903 TCTCCATTTTAGATTCTCCAGGG 57.363 43.478 0.00 0.00 0.00 4.45
3117 6224 3.771479 TCATGTGCATCTCCTAACAGACT 59.229 43.478 0.00 0.00 0.00 3.24
3130 6237 4.103627 TCTGTGGGATATCTTCATGTGCAT 59.896 41.667 2.05 0.00 0.00 3.96
3143 6250 5.886609 TCCACTTCAATTTTCTGTGGGATA 58.113 37.500 10.06 0.00 45.74 2.59
3164 6271 5.965334 CGTACATTTATCATGTGTGCTTTCC 59.035 40.000 0.00 0.00 33.76 3.13
3187 6294 1.402968 CCACAGGCTCAATTCCATTCG 59.597 52.381 0.00 0.00 0.00 3.34
3205 6312 7.601886 CACATGTTGTAATATTTTTGGAAGCCA 59.398 33.333 0.00 0.00 0.00 4.75
3220 6327 5.238432 GTGACATCTGGTTCACATGTTGTAA 59.762 40.000 0.00 0.00 30.71 2.41
3236 6343 1.980765 TCTGCTTGGGAAGTGACATCT 59.019 47.619 0.00 0.00 0.00 2.90
3263 6370 4.202080 GGAGTAACAAAGTTTGACCCAACC 60.202 45.833 22.23 12.86 0.00 3.77
3319 6426 5.933617 TCAATGTTTCTGCTGAGCCTATAT 58.066 37.500 0.23 0.00 0.00 0.86
3326 6433 8.633075 TTTTAGTTTTCAATGTTTCTGCTGAG 57.367 30.769 0.00 0.00 0.00 3.35
3336 6443 9.783256 GTTCAGTGTACTTTTAGTTTTCAATGT 57.217 29.630 0.00 0.00 0.00 2.71
3344 6451 6.995511 TTGCTGTTCAGTGTACTTTTAGTT 57.004 33.333 1.38 0.00 0.00 2.24
3376 6483 2.846193 TCCTAGCAACTGAACCACAAC 58.154 47.619 0.00 0.00 0.00 3.32
3393 6500 2.735259 TAACTTCCAGGGGTCTTCCT 57.265 50.000 0.00 0.00 37.71 3.36
3427 6534 3.245229 ACCTGGTGCAGATTTGGTATTCA 60.245 43.478 0.00 0.00 32.44 2.57
3611 6726 1.472480 CTTCCGGCCCAACATTTACAG 59.528 52.381 0.00 0.00 0.00 2.74
3618 6733 0.178975 AATGTTCTTCCGGCCCAACA 60.179 50.000 12.52 12.52 33.42 3.33
3796 6924 2.866028 CTTGGCAGCTCGAGCAAC 59.134 61.111 36.87 27.15 45.16 4.17
3839 6967 0.875059 CTTCAGCCAAGAACCGAACC 59.125 55.000 0.00 0.00 33.29 3.62
4074 7203 3.388350 AGGTTATTAGTACCAGAGCAGCC 59.612 47.826 0.00 0.00 38.16 4.85
4090 7219 9.499369 ACTGAAGATGGATGCTATATAGGTTAT 57.501 33.333 11.72 0.00 0.00 1.89
4133 7265 7.124750 TGAATCATCAGTCTACAGGATTCAAGA 59.875 37.037 14.33 0.00 44.27 3.02
4164 7344 4.854399 TCGGCATAAGAAAACAGTTTGTG 58.146 39.130 0.00 0.00 0.00 3.33
4165 7345 4.578928 ACTCGGCATAAGAAAACAGTTTGT 59.421 37.500 0.00 0.00 0.00 2.83
4208 7395 1.816835 CTCGGCTTAGACACCTGTACA 59.183 52.381 0.00 0.00 0.00 2.90
4372 7578 5.879223 CCTCAAAGCTAGATCAAGACAACAT 59.121 40.000 0.00 0.00 0.00 2.71
4378 7584 3.369892 GGCACCTCAAAGCTAGATCAAGA 60.370 47.826 0.00 0.00 0.00 3.02
4403 7609 0.894141 AAGCCAACACACAACAGCAA 59.106 45.000 0.00 0.00 0.00 3.91
4481 7688 5.057149 GTGTAATTGTCCTGTGACTTGAGT 58.943 41.667 0.00 0.00 42.28 3.41
4510 7718 1.131126 GCACGAGTAAATGCAGCACAT 59.869 47.619 0.00 0.00 41.65 3.21
4543 7756 7.360946 CCAACCGATTTTCTAAACCTAGAGTTG 60.361 40.741 0.00 0.00 39.19 3.16
4567 7780 3.695830 AGTCGACTGATTTTTAGCCCA 57.304 42.857 19.30 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.