Multiple sequence alignment - TraesCS7D01G052900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G052900 chr7D 100.000 4213 0 0 1 4213 27661403 27657191 0.000000e+00 7781
1 TraesCS7D01G052900 chrUn 89.572 4277 252 74 1 4213 81688336 81692482 0.000000e+00 5249
2 TraesCS7D01G052900 chrUn 87.730 163 8 4 155 316 81685373 81685524 3.350000e-41 180
3 TraesCS7D01G052900 chrUn 85.882 170 10 9 20 179 81685202 81685367 7.240000e-38 169
4 TraesCS7D01G052900 chr4A 90.105 4083 225 79 15 3996 703271782 703267778 0.000000e+00 5136
5 TraesCS7D01G052900 chr4A 96.629 178 6 0 4036 4213 703267776 703267599 3.180000e-76 296
6 TraesCS7D01G052900 chr4A 74.138 406 93 12 1113 1512 466926093 466926492 1.570000e-34 158
7 TraesCS7D01G052900 chr4A 73.292 322 70 15 1187 1500 499341753 499342066 2.070000e-18 104
8 TraesCS7D01G052900 chr4D 74.160 387 88 11 1171 1551 109911826 109911446 2.620000e-32 150
9 TraesCS7D01G052900 chr4D 73.913 322 68 15 1187 1500 85579430 85579743 9.570000e-22 115
10 TraesCS7D01G052900 chr4B 73.869 398 90 13 1122 1512 171028463 171028073 3.390000e-31 147
11 TraesCS7D01G052900 chr4B 73.602 322 69 15 1187 1500 122520740 122521053 4.450000e-20 110
12 TraesCS7D01G052900 chr3D 76.404 267 53 7 1113 1374 439838813 439839074 7.350000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G052900 chr7D 27657191 27661403 4212 True 7781 7781 100.000 1 4213 1 chr7D.!!$R1 4212
1 TraesCS7D01G052900 chrUn 81685202 81692482 7280 False 1866 5249 87.728 1 4213 3 chrUn.!!$F1 4212
2 TraesCS7D01G052900 chr4A 703267599 703271782 4183 True 2716 5136 93.367 15 4213 2 chr4A.!!$R1 4198

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 3439 0.178870 CCCCCTAATCCCCTCCCTAC 60.179 65.0 0.0 0.0 0.00 3.18 F
829 4025 0.249405 CTCCTCCTCGCAGATTCAGC 60.249 60.0 0.0 0.0 33.89 4.26 F
2228 5467 0.673644 GCGCCAGCTAAAGGTTCAGA 60.674 55.0 0.0 0.0 41.01 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 4866 1.272212 CCTGACAAAATCCAAACCCCG 59.728 52.381 0.0 0.0 0.0 5.73 R
2535 5789 1.134788 GGTGTGTTCTCGTATCCAGGG 60.135 57.143 0.0 0.0 0.0 4.45 R
3675 6957 0.603707 CGAGGCAGAGCAAGTTCCAA 60.604 55.000 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 3176 9.644119 GGCATACCAGTAATTGTCACAACAAGG 62.644 44.444 0.00 0.00 41.52 3.61
120 3262 4.290722 AGGATGATGATGATTAGTTCCCCC 59.709 45.833 0.00 0.00 0.00 5.40
122 3264 5.458069 GGATGATGATGATTAGTTCCCCCAA 60.458 44.000 0.00 0.00 0.00 4.12
123 3265 4.792068 TGATGATGATTAGTTCCCCCAAC 58.208 43.478 0.00 0.00 34.86 3.77
228 3404 0.396695 CTCCTACTAACCGGGCTCCA 60.397 60.000 6.32 0.00 0.00 3.86
240 3416 1.111715 GGGCTCCATTTCCATCTGCC 61.112 60.000 0.00 0.00 38.28 4.85
260 3439 0.178870 CCCCCTAATCCCCTCCCTAC 60.179 65.000 0.00 0.00 0.00 3.18
316 3496 1.202817 ACCAACGGAACCAAACAACAC 59.797 47.619 0.00 0.00 0.00 3.32
350 3536 2.540910 TCTCCCTCTCCACCCCCT 60.541 66.667 0.00 0.00 0.00 4.79
351 3537 2.366167 CTCCCTCTCCACCCCCTG 60.366 72.222 0.00 0.00 0.00 4.45
387 3575 4.031129 CTGCTGGTGGGAGCTGCT 62.031 66.667 0.00 0.00 40.49 4.24
390 3578 2.046507 CTGGTGGGAGCTGCTGAC 60.047 66.667 7.01 2.16 0.00 3.51
391 3579 3.618780 CTGGTGGGAGCTGCTGACC 62.619 68.421 7.01 16.58 0.00 4.02
392 3580 3.325753 GGTGGGAGCTGCTGACCT 61.326 66.667 7.01 0.00 0.00 3.85
393 3581 2.267324 GTGGGAGCTGCTGACCTC 59.733 66.667 7.01 6.59 0.00 3.85
394 3582 3.385384 TGGGAGCTGCTGACCTCG 61.385 66.667 7.01 0.00 0.00 4.63
496 3687 2.041596 CCCCTCCCCCGTCCTTAA 59.958 66.667 0.00 0.00 0.00 1.85
749 3945 3.127030 GTGGATTTCTGCTAGGTTTTCCG 59.873 47.826 0.00 0.00 46.35 4.30
816 4012 1.681486 CCCGCTCTTCTTCCTCCTCC 61.681 65.000 0.00 0.00 0.00 4.30
829 4025 0.249405 CTCCTCCTCGCAGATTCAGC 60.249 60.000 0.00 0.00 33.89 4.26
947 4148 3.607661 GGGAGGCCTCGTCGGATC 61.608 72.222 26.36 10.43 33.16 3.36
1161 4375 2.060980 GGTCATCCGGTCCTGCTCT 61.061 63.158 0.00 0.00 0.00 4.09
1638 4866 3.017442 GGTGGTCTTTGGAGGCTAAATC 58.983 50.000 0.00 0.00 0.00 2.17
1698 4927 2.789842 GGGGAGCCCGTTTTACATC 58.210 57.895 0.00 0.00 36.85 3.06
1838 5067 3.542648 TCTTCGAGTGTATCAGGTCGAT 58.457 45.455 0.00 0.00 40.85 3.59
1904 5133 1.900351 CCAAGGAGCTCATCACCGA 59.100 57.895 17.19 0.00 0.00 4.69
1926 5155 4.271816 CTGCGGCGCGATCCTAGT 62.272 66.667 28.09 0.00 0.00 2.57
1935 5164 1.036707 GCGATCCTAGTCAGAGGCTT 58.963 55.000 0.00 0.00 36.45 4.35
1963 5192 3.305403 CGAGCAAGTTCTAGGTGAGACAA 60.305 47.826 0.00 0.00 32.31 3.18
1996 5232 2.225091 TGGGAAACAACAGGATGCTCAT 60.225 45.455 0.00 0.00 42.53 2.90
2015 5251 7.577303 TGCTCATAATTCCATTCCTTTCTACT 58.423 34.615 0.00 0.00 0.00 2.57
2017 5253 9.213799 GCTCATAATTCCATTCCTTTCTACTAG 57.786 37.037 0.00 0.00 0.00 2.57
2097 5336 5.874810 GTGTCTATACCTTCATGCAACTGAA 59.125 40.000 2.89 2.89 34.14 3.02
2143 5382 7.921786 TCAATCAGAATTCGGTTGATTAGTT 57.078 32.000 16.66 0.00 38.98 2.24
2146 5385 6.494893 TCAGAATTCGGTTGATTAGTTTGG 57.505 37.500 5.48 0.00 0.00 3.28
2166 5405 7.926018 AGTTTGGAATTGTTTACTTAAAGCTGG 59.074 33.333 0.00 0.00 0.00 4.85
2228 5467 0.673644 GCGCCAGCTAAAGGTTCAGA 60.674 55.000 0.00 0.00 41.01 3.27
2311 5552 0.968405 TTGCTGGCCCTTGAATGTTC 59.032 50.000 0.00 0.00 0.00 3.18
2320 5561 3.554960 GCCCTTGAATGTTCCCTTTTGAC 60.555 47.826 0.00 0.00 0.00 3.18
2354 5601 8.177119 TGGTTGCTTCTTTATTAGTGTTGATT 57.823 30.769 0.00 0.00 0.00 2.57
2355 5602 8.081633 TGGTTGCTTCTTTATTAGTGTTGATTG 58.918 33.333 0.00 0.00 0.00 2.67
2356 5603 8.296713 GGTTGCTTCTTTATTAGTGTTGATTGA 58.703 33.333 0.00 0.00 0.00 2.57
2370 5617 6.038382 AGTGTTGATTGATGATTCATCTCTGC 59.962 38.462 23.49 12.81 41.06 4.26
2379 5626 1.067295 TTCATCTCTGCCACCCTTGT 58.933 50.000 0.00 0.00 0.00 3.16
2389 5636 1.273327 GCCACCCTTGTTGGAATCTTG 59.727 52.381 0.00 0.00 38.35 3.02
2436 5683 6.982160 TTTCCAGACCTTACTGTGTAGTAA 57.018 37.500 0.00 0.00 44.84 2.24
2506 5760 5.148502 TGTTTACCATGTGGGGTTTATTGT 58.851 37.500 3.77 0.00 42.42 2.71
2535 5789 1.246056 TGCCCTTTGTGCAGAGCATC 61.246 55.000 0.00 0.00 41.91 3.91
2553 5807 2.225382 TCCCTGGATACGAGAACACA 57.775 50.000 0.00 0.00 42.51 3.72
2840 6094 0.040058 AACCCATGAAGGATGCTGCA 59.960 50.000 4.13 4.13 41.22 4.41
2846 6100 1.675641 GAAGGATGCTGCACCCGTT 60.676 57.895 7.55 9.23 0.00 4.44
2858 6112 2.358125 CCCGTTGTGTCGATGCCA 60.358 61.111 0.00 0.00 0.00 4.92
2867 6121 0.321346 TGTCGATGCCAAGCTTCTCA 59.679 50.000 0.00 0.00 31.76 3.27
2870 6124 2.421424 GTCGATGCCAAGCTTCTCATTT 59.579 45.455 10.33 0.00 31.76 2.32
2876 6130 2.991866 GCCAAGCTTCTCATTTTTCTGC 59.008 45.455 0.00 0.00 0.00 4.26
2942 6196 0.966920 ACGACACCACGAAGGAGAAT 59.033 50.000 5.70 0.00 41.22 2.40
3086 6346 2.434884 AGCAGGCGGAATCACACG 60.435 61.111 0.00 0.00 0.00 4.49
3096 6356 3.657448 AATCACACGATCGGCGCCA 62.657 57.895 28.98 14.46 46.04 5.69
3185 6448 1.898574 GCACTTGTCCACCACCCTG 60.899 63.158 0.00 0.00 0.00 4.45
3326 6590 3.616641 CGAAGTGAGATGAGATGAGACG 58.383 50.000 0.00 0.00 0.00 4.18
3327 6591 3.311048 CGAAGTGAGATGAGATGAGACGA 59.689 47.826 0.00 0.00 0.00 4.20
3328 6592 4.552572 CGAAGTGAGATGAGATGAGACGAG 60.553 50.000 0.00 0.00 0.00 4.18
3335 6599 5.563592 AGATGAGATGAGACGAGATGAGAT 58.436 41.667 0.00 0.00 0.00 2.75
3372 6636 1.824852 TGAGTGTGTCACTGTCACTGT 59.175 47.619 7.14 0.00 45.44 3.55
3373 6637 2.159240 TGAGTGTGTCACTGTCACTGTC 60.159 50.000 7.14 5.29 45.44 3.51
3374 6638 1.824852 AGTGTGTCACTGTCACTGTCA 59.175 47.619 4.27 0.00 43.63 3.58
3375 6639 1.927174 GTGTGTCACTGTCACTGTCAC 59.073 52.381 4.27 1.05 36.83 3.67
3376 6640 1.134818 TGTGTCACTGTCACTGTCACC 60.135 52.381 4.27 0.00 36.83 4.02
3377 6641 0.464036 TGTCACTGTCACTGTCACCC 59.536 55.000 0.00 0.00 0.00 4.61
3387 6651 2.816087 TCACTGTCACCCGTAGTAGAAC 59.184 50.000 0.00 0.00 0.00 3.01
3390 6654 2.485426 CTGTCACCCGTAGTAGAACGAA 59.515 50.000 0.00 0.00 45.68 3.85
3450 6725 1.654105 GTAGATCGCCGAGTGTTTGTG 59.346 52.381 0.00 0.00 0.00 3.33
3479 6754 5.697633 GTGCCAAGTGATGATGTGAAATTTT 59.302 36.000 0.00 0.00 0.00 1.82
3480 6755 5.697178 TGCCAAGTGATGATGTGAAATTTTG 59.303 36.000 0.00 0.00 0.00 2.44
3492 6767 6.042638 TGTGAAATTTTGGTTTGGAACTCA 57.957 33.333 0.00 0.00 0.00 3.41
3493 6768 5.872070 TGTGAAATTTTGGTTTGGAACTCAC 59.128 36.000 0.00 0.00 0.00 3.51
3555 6830 0.865769 CGGGAAGAGAACCGTGTTTG 59.134 55.000 0.00 0.00 44.85 2.93
3556 6831 1.539496 CGGGAAGAGAACCGTGTTTGA 60.539 52.381 0.00 0.00 44.85 2.69
3614 6889 5.256474 TGGAGAGGATTTGACCAGAAATTC 58.744 41.667 0.00 0.00 0.00 2.17
3643 6925 7.812669 ACGGTTTCTTATATTGCTTTCCTTTTG 59.187 33.333 0.00 0.00 0.00 2.44
3668 6950 3.869246 TGAAAGAAGTTCAGACGACAACC 59.131 43.478 5.50 0.00 41.47 3.77
3669 6951 2.528041 AGAAGTTCAGACGACAACCC 57.472 50.000 5.50 0.00 0.00 4.11
3674 6956 0.107831 TTCAGACGACAACCCCCAAG 59.892 55.000 0.00 0.00 0.00 3.61
3675 6957 1.052124 TCAGACGACAACCCCCAAGT 61.052 55.000 0.00 0.00 0.00 3.16
3676 6958 0.179029 CAGACGACAACCCCCAAGTT 60.179 55.000 0.00 0.00 0.00 2.66
3730 7014 1.798234 AACACCATGTCGTCGTCCGA 61.798 55.000 0.00 0.00 45.00 4.55
4019 7311 2.029666 CACGGCCCTGATCGATCC 59.970 66.667 22.31 6.48 0.00 3.36
4026 7318 4.630785 CTGATCGATCCGCCGCGT 62.631 66.667 22.31 0.00 0.00 6.01
4027 7319 4.201679 TGATCGATCCGCCGCGTT 62.202 61.111 22.31 0.00 0.00 4.84
4028 7320 3.692367 GATCGATCCGCCGCGTTG 61.692 66.667 14.76 0.00 0.00 4.10
4113 7405 3.003113 GCTACAGGACCCGCTCGTT 62.003 63.158 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.096092 GGTATGCCAATGTTGAGGGAAA 58.904 45.455 0.00 0.00 34.09 3.13
2 3 2.042297 TGGTATGCCAATGTTGAGGGAA 59.958 45.455 0.00 0.00 42.83 3.97
4 5 2.026641 CTGGTATGCCAATGTTGAGGG 58.973 52.381 3.43 0.00 45.51 4.30
9 3144 5.714333 TGACAATTACTGGTATGCCAATGTT 59.286 36.000 3.43 0.00 45.51 2.71
10 3145 5.125417 GTGACAATTACTGGTATGCCAATGT 59.875 40.000 3.43 1.78 45.51 2.71
32 3167 0.385390 GCCTTGTCACCCTTGTTGTG 59.615 55.000 0.00 0.00 35.01 3.33
41 3176 2.545742 GGTTTGATGTTGCCTTGTCACC 60.546 50.000 0.00 0.00 0.00 4.02
100 3242 5.103558 TGTTGGGGGAACTAATCATCATCAT 60.104 40.000 0.00 0.00 35.37 2.45
115 3257 2.288598 TGGTGGTATATGTTGGGGGA 57.711 50.000 0.00 0.00 0.00 4.81
117 3259 3.230134 CCATTGGTGGTATATGTTGGGG 58.770 50.000 0.00 0.00 40.83 4.96
331 3517 2.041405 GGGGTGGAGAGGGAGAGG 60.041 72.222 0.00 0.00 0.00 3.69
333 3519 2.540910 AGGGGGTGGAGAGGGAGA 60.541 66.667 0.00 0.00 0.00 3.71
335 3521 4.741239 GCAGGGGGTGGAGAGGGA 62.741 72.222 0.00 0.00 0.00 4.20
723 3919 1.482593 ACCTAGCAGAAATCCACCGAG 59.517 52.381 0.00 0.00 0.00 4.63
766 3962 1.135944 GCAAGCTTTAGCACTCGAACC 60.136 52.381 0.00 0.00 45.16 3.62
799 3995 0.744281 GAGGAGGAGGAAGAAGAGCG 59.256 60.000 0.00 0.00 0.00 5.03
911 4107 3.528370 CGAATCGCCCCGGAGACT 61.528 66.667 0.73 0.00 0.00 3.24
1062 4276 4.221422 GCCGCCTCCAGTATCGCA 62.221 66.667 0.00 0.00 0.00 5.10
1161 4375 3.295304 CTCGCCGGTGACCATGTCA 62.295 63.158 15.21 0.00 40.50 3.58
1551 4765 3.646715 GGCTGGGTGTAGGTGGCA 61.647 66.667 0.00 0.00 0.00 4.92
1638 4866 1.272212 CCTGACAAAATCCAAACCCCG 59.728 52.381 0.00 0.00 0.00 5.73
1935 5164 1.476891 CCTAGAACTTGCTCGGCTGTA 59.523 52.381 0.00 0.00 0.00 2.74
1983 5219 5.537674 GGAATGGAATTATGAGCATCCTGTT 59.462 40.000 0.00 0.00 36.07 3.16
2015 5251 9.696917 CTTGTGTATGATGCTAATGATGTACTA 57.303 33.333 0.00 0.00 0.00 1.82
2017 5253 7.172190 AGCTTGTGTATGATGCTAATGATGTAC 59.828 37.037 0.00 0.00 31.71 2.90
2018 5254 7.219322 AGCTTGTGTATGATGCTAATGATGTA 58.781 34.615 0.00 0.00 31.71 2.29
2019 5255 6.060136 AGCTTGTGTATGATGCTAATGATGT 58.940 36.000 0.00 0.00 31.71 3.06
2020 5256 6.555812 AGCTTGTGTATGATGCTAATGATG 57.444 37.500 0.00 0.00 31.71 3.07
2097 5336 7.415592 TGATCTCTACATTCTGATCAACAGT 57.584 36.000 0.00 0.00 45.86 3.55
2143 5382 7.354751 ACCAGCTTTAAGTAAACAATTCCAA 57.645 32.000 0.00 0.00 0.00 3.53
2146 5385 8.865590 TCAAACCAGCTTTAAGTAAACAATTC 57.134 30.769 0.00 0.00 0.00 2.17
2184 5423 4.161942 AGCTCATGACTTAGCAGTGAAGAT 59.838 41.667 7.34 0.00 41.32 2.40
2228 5467 5.251700 AGAAATCCAGAACATGACCCTAACT 59.748 40.000 0.00 0.00 0.00 2.24
2311 5552 4.605640 ACCATGTGATTTGTCAAAAGGG 57.394 40.909 1.31 0.00 0.00 3.95
2320 5561 7.894376 AATAAAGAAGCAACCATGTGATTTG 57.106 32.000 0.00 0.00 0.00 2.32
2354 5601 2.158711 GGGTGGCAGAGATGAATCATCA 60.159 50.000 23.41 1.18 42.72 3.07
2355 5602 2.106166 AGGGTGGCAGAGATGAATCATC 59.894 50.000 15.01 15.01 40.80 2.92
2356 5603 2.133520 AGGGTGGCAGAGATGAATCAT 58.866 47.619 0.00 0.00 0.00 2.45
2370 5617 2.297033 CACAAGATTCCAACAAGGGTGG 59.703 50.000 0.00 0.00 38.24 4.61
2379 5626 4.344679 ACAGCCAAATTCACAAGATTCCAA 59.655 37.500 0.00 0.00 0.00 3.53
2389 5636 3.308438 AGCAATGACAGCCAAATTCAC 57.692 42.857 0.00 0.00 0.00 3.18
2436 5683 5.574188 AGGAAACCATTAACAGCTGATCTT 58.426 37.500 23.35 7.04 0.00 2.40
2506 5760 2.360801 GCACAAAGGGCAGTTGTTTAGA 59.639 45.455 2.60 0.00 37.09 2.10
2535 5789 1.134788 GGTGTGTTCTCGTATCCAGGG 60.135 57.143 0.00 0.00 0.00 4.45
2587 5841 1.905843 CTCCCGAGGCCGATCTCAT 60.906 63.158 0.00 0.00 38.22 2.90
2615 5869 2.876645 GAGAACGAGCACGAGCCG 60.877 66.667 11.40 12.44 43.56 5.52
2840 6094 2.358247 GGCATCGACACAACGGGT 60.358 61.111 0.00 0.00 0.00 5.28
2846 6100 0.035317 AGAAGCTTGGCATCGACACA 59.965 50.000 2.10 0.00 31.18 3.72
2858 6112 2.229784 CCCGCAGAAAAATGAGAAGCTT 59.770 45.455 0.00 0.00 0.00 3.74
2867 6121 0.331616 ACCCTAGCCCGCAGAAAAAT 59.668 50.000 0.00 0.00 0.00 1.82
2870 6124 2.666098 GGACCCTAGCCCGCAGAAA 61.666 63.158 0.00 0.00 0.00 2.52
2912 6166 3.712881 GTGTCGTTGCCTGACGCC 61.713 66.667 3.11 0.00 42.50 5.68
2913 6167 3.712881 GGTGTCGTTGCCTGACGC 61.713 66.667 5.38 5.38 44.15 5.19
2915 6169 2.594962 CGTGGTGTCGTTGCCTGAC 61.595 63.158 0.00 0.00 36.88 3.51
2916 6170 2.279851 CGTGGTGTCGTTGCCTGA 60.280 61.111 0.00 0.00 0.00 3.86
2917 6171 1.831389 CTTCGTGGTGTCGTTGCCTG 61.831 60.000 0.00 0.00 0.00 4.85
2918 6172 1.594293 CTTCGTGGTGTCGTTGCCT 60.594 57.895 0.00 0.00 0.00 4.75
2920 6174 1.557443 CTCCTTCGTGGTGTCGTTGC 61.557 60.000 0.00 0.00 37.07 4.17
2921 6175 0.031585 TCTCCTTCGTGGTGTCGTTG 59.968 55.000 0.00 0.00 37.07 4.10
2922 6176 0.748450 TTCTCCTTCGTGGTGTCGTT 59.252 50.000 0.00 0.00 37.07 3.85
2942 6196 3.059884 GTCTTCGACACAATGAGCTTCA 58.940 45.455 0.00 0.00 32.09 3.02
3080 6340 4.794439 CTGGCGCCGATCGTGTGA 62.794 66.667 23.90 0.00 41.07 3.58
3116 6379 2.927856 ACCGCCATGTCCAGGTCA 60.928 61.111 0.00 0.00 29.76 4.02
3171 6434 2.457323 GGGACAGGGTGGTGGACAA 61.457 63.158 0.00 0.00 0.00 3.18
3241 6504 0.793250 GAACAAACTCTGAGCGCTCC 59.207 55.000 33.23 16.56 0.00 4.70
3326 6590 8.853077 TCTCTAATCTCTTCTCATCTCATCTC 57.147 38.462 0.00 0.00 0.00 2.75
3327 6591 9.239551 CATCTCTAATCTCTTCTCATCTCATCT 57.760 37.037 0.00 0.00 0.00 2.90
3328 6592 9.234827 TCATCTCTAATCTCTTCTCATCTCATC 57.765 37.037 0.00 0.00 0.00 2.92
3335 6599 6.889177 ACACACTCATCTCTAATCTCTTCTCA 59.111 38.462 0.00 0.00 0.00 3.27
3372 6636 3.084039 ACATTCGTTCTACTACGGGTGA 58.916 45.455 0.00 0.00 41.67 4.02
3373 6637 3.498927 ACATTCGTTCTACTACGGGTG 57.501 47.619 0.00 0.00 41.67 4.61
3374 6638 5.591877 AGATTACATTCGTTCTACTACGGGT 59.408 40.000 0.00 0.00 41.67 5.28
3375 6639 5.913514 CAGATTACATTCGTTCTACTACGGG 59.086 44.000 0.00 0.00 41.67 5.28
3376 6640 5.913514 CCAGATTACATTCGTTCTACTACGG 59.086 44.000 0.00 0.00 41.67 4.02
3377 6641 6.632035 GTCCAGATTACATTCGTTCTACTACG 59.368 42.308 0.00 0.00 42.68 3.51
3387 6651 8.713737 ATATCATCATGTCCAGATTACATTCG 57.286 34.615 0.00 0.00 35.39 3.34
3479 6754 3.002862 CGAAATTCGTGAGTTCCAAACCA 59.997 43.478 7.29 0.00 34.72 3.67
3480 6755 3.551551 CGAAATTCGTGAGTTCCAAACC 58.448 45.455 7.29 0.00 34.72 3.27
3614 6889 5.963586 GGAAAGCAATATAAGAAACCGTTCG 59.036 40.000 0.00 0.00 38.90 3.95
3643 6925 3.555956 TGTCGTCTGAACTTCTTTCAAGC 59.444 43.478 0.00 0.00 43.90 4.01
3674 6956 0.877743 GAGGCAGAGCAAGTTCCAAC 59.122 55.000 0.00 0.00 0.00 3.77
3675 6957 0.603707 CGAGGCAGAGCAAGTTCCAA 60.604 55.000 0.00 0.00 0.00 3.53
3676 6958 1.004560 CGAGGCAGAGCAAGTTCCA 60.005 57.895 0.00 0.00 0.00 3.53
3677 6959 2.394563 GCGAGGCAGAGCAAGTTCC 61.395 63.158 0.00 0.00 0.00 3.62
3681 6963 2.884685 CGAGCGAGGCAGAGCAAG 60.885 66.667 0.00 0.00 35.48 4.01
3830 7121 1.262640 GGGTTTAGGAGAGCACGGGA 61.263 60.000 0.00 0.00 0.00 5.14
3997 7289 2.268920 GATCAGGGCCGTGCAGAA 59.731 61.111 20.76 3.64 0.00 3.02
4019 7311 4.973360 CAACCAACCAACGCGGCG 62.973 66.667 22.36 22.36 39.03 6.46
4026 7318 1.305297 TGCACCACCAACCAACCAA 60.305 52.632 0.00 0.00 0.00 3.67
4027 7319 1.756172 CTGCACCACCAACCAACCA 60.756 57.895 0.00 0.00 0.00 3.67
4028 7320 2.498056 CCTGCACCACCAACCAACC 61.498 63.158 0.00 0.00 0.00 3.77
4029 7321 2.498056 CCCTGCACCACCAACCAAC 61.498 63.158 0.00 0.00 0.00 3.77
4030 7322 2.123511 CCCTGCACCACCAACCAA 60.124 61.111 0.00 0.00 0.00 3.67
4098 7390 4.003788 CCAACGAGCGGGTCCTGT 62.004 66.667 0.98 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.