Multiple sequence alignment - TraesCS7D01G051800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G051800 chr7D 100.000 5277 0 0 1 5277 27097828 27092552 0.000000e+00 9745.0
1 TraesCS7D01G051800 chr7D 86.213 1661 181 25 2903 4547 26819625 26817997 0.000000e+00 1755.0
2 TraesCS7D01G051800 chr7D 84.244 1428 159 26 1603 3002 27049849 27048460 0.000000e+00 1330.0
3 TraesCS7D01G051800 chr7D 87.383 1173 120 19 2824 3987 27048572 27047419 0.000000e+00 1321.0
4 TraesCS7D01G051800 chr7D 82.891 1356 139 35 1607 2908 26821036 26819720 0.000000e+00 1133.0
5 TraesCS7D01G051800 chr7D 94.184 705 36 2 4578 5277 240875017 240874313 0.000000e+00 1070.0
6 TraesCS7D01G051800 chr7D 92.188 704 49 3 4578 5276 406996280 406995578 0.000000e+00 990.0
7 TraesCS7D01G051800 chr7D 83.131 824 95 20 2913 3698 26834990 26834173 0.000000e+00 712.0
8 TraesCS7D01G051800 chr7D 83.969 655 80 12 964 1606 27050437 27049796 5.850000e-169 604.0
9 TraesCS7D01G051800 chr7D 83.204 643 79 17 3929 4547 26833930 26833293 3.570000e-156 562.0
10 TraesCS7D01G051800 chr7D 86.895 351 41 4 3349 3698 26982394 26982048 6.410000e-104 388.0
11 TraesCS7D01G051800 chr7D 83.375 397 38 20 2052 2430 26983146 26982760 5.060000e-90 342.0
12 TraesCS7D01G051800 chr7D 98.551 69 1 0 3630 3698 26791690 26791622 7.180000e-24 122.0
13 TraesCS7D01G051800 chr7D 98.039 51 1 0 1556 1606 27096222 27096172 7.280000e-14 89.8
14 TraesCS7D01G051800 chr7D 98.039 51 1 0 1607 1657 27096273 27096223 7.280000e-14 89.8
15 TraesCS7D01G051800 chr7A 93.134 2971 151 24 1607 4555 27291251 27288312 0.000000e+00 4307.0
16 TraesCS7D01G051800 chr7A 85.748 2982 316 52 1627 4547 27281988 27279055 0.000000e+00 3051.0
17 TraesCS7D01G051800 chr7A 92.374 695 40 9 918 1606 27291888 27291201 0.000000e+00 977.0
18 TraesCS7D01G051800 chr7A 84.194 620 66 18 1001 1606 27282559 27281958 1.650000e-159 573.0
19 TraesCS7D01G051800 chr7A 86.486 333 42 3 3368 3698 27244046 27243715 3.880000e-96 363.0
20 TraesCS7D01G051800 chr7A 85.714 217 28 3 3718 3932 27233216 27233001 5.320000e-55 226.0
21 TraesCS7D01G051800 chr7A 78.135 311 41 15 1003 1313 27233959 27233676 7.030000e-39 172.0
22 TraesCS7D01G051800 chr7A 80.693 202 22 10 2052 2241 27233638 27233442 1.980000e-29 141.0
23 TraesCS7D01G051800 chr4A 86.001 2993 312 53 1607 4547 704647532 704644595 0.000000e+00 3107.0
24 TraesCS7D01G051800 chr4A 85.887 829 88 15 3730 4547 704629332 704628522 0.000000e+00 856.0
25 TraesCS7D01G051800 chr4A 85.226 819 91 15 3740 4547 704598245 704597446 0.000000e+00 815.0
26 TraesCS7D01G051800 chr4A 84.690 823 96 15 3736 4547 704578384 704577581 0.000000e+00 795.0
27 TraesCS7D01G051800 chr4A 81.975 638 91 14 3932 4547 710852049 710851414 2.180000e-143 520.0
28 TraesCS7D01G051800 chr4A 87.688 398 39 8 964 1358 704648132 704647742 6.230000e-124 455.0
29 TraesCS7D01G051800 chr4A 79.751 642 75 24 3929 4547 704621225 704620616 1.060000e-111 414.0
30 TraesCS7D01G051800 chr4A 83.047 407 56 10 2892 3287 710852968 710852564 1.810000e-94 357.0
31 TraesCS7D01G051800 chr4A 87.234 282 29 6 964 1242 704657005 704656728 1.100000e-81 315.0
32 TraesCS7D01G051800 chr4A 97.101 69 2 0 3630 3698 704578454 704578386 3.340000e-22 117.0
33 TraesCS7D01G051800 chr2A 91.266 790 62 4 1 784 738295164 738294376 0.000000e+00 1070.0
34 TraesCS7D01G051800 chr5D 93.371 709 40 4 4574 5277 490369552 490368846 0.000000e+00 1042.0
35 TraesCS7D01G051800 chr1D 93.079 708 40 5 4575 5277 118880743 118881446 0.000000e+00 1027.0
36 TraesCS7D01G051800 chr3D 92.797 708 44 3 4575 5277 420601766 420602471 0.000000e+00 1018.0
37 TraesCS7D01G051800 chr3D 92.102 709 50 3 4575 5277 105355329 105356037 0.000000e+00 994.0
38 TraesCS7D01G051800 chr6D 91.922 718 52 3 4565 5277 33859524 33860240 0.000000e+00 1000.0
39 TraesCS7D01G051800 chr6D 92.319 703 49 2 4578 5275 312348062 312347360 0.000000e+00 994.0
40 TraesCS7D01G051800 chr6D 86.667 60 8 0 172 231 428253752 428253811 3.410000e-07 67.6
41 TraesCS7D01G051800 chr4D 92.330 704 48 3 4579 5277 354205442 354204740 0.000000e+00 996.0
42 TraesCS7D01G051800 chrUn 89.672 610 45 8 1912 2508 296087788 296088392 0.000000e+00 761.0
43 TraesCS7D01G051800 chrUn 89.672 610 45 8 1912 2508 296092890 296093494 0.000000e+00 761.0
44 TraesCS7D01G051800 chrUn 89.672 610 45 8 1912 2508 352685284 352685888 0.000000e+00 761.0
45 TraesCS7D01G051800 chr6B 88.835 412 37 5 381 784 696087291 696086881 1.020000e-136 497.0
46 TraesCS7D01G051800 chr6B 86.667 60 8 0 172 231 644180744 644180803 3.410000e-07 67.6
47 TraesCS7D01G051800 chr2B 91.016 256 19 3 381 635 788525868 788525616 5.060000e-90 342.0
48 TraesCS7D01G051800 chr2B 91.176 68 6 0 800 867 78867811 78867744 5.630000e-15 93.5
49 TraesCS7D01G051800 chr2D 91.176 68 6 0 800 867 50689245 50689178 5.630000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G051800 chr7D 27092552 27097828 5276 True 3308.2 9745 98.692667 1 5277 3 chr7D.!!$R8 5276
1 TraesCS7D01G051800 chr7D 26817997 26821036 3039 True 1444.0 1755 84.552000 1607 4547 2 chr7D.!!$R4 2940
2 TraesCS7D01G051800 chr7D 27047419 27050437 3018 True 1085.0 1330 85.198667 964 3987 3 chr7D.!!$R7 3023
3 TraesCS7D01G051800 chr7D 240874313 240875017 704 True 1070.0 1070 94.184000 4578 5277 1 chr7D.!!$R2 699
4 TraesCS7D01G051800 chr7D 406995578 406996280 702 True 990.0 990 92.188000 4578 5276 1 chr7D.!!$R3 698
5 TraesCS7D01G051800 chr7D 26833293 26834990 1697 True 637.0 712 83.167500 2913 4547 2 chr7D.!!$R5 1634
6 TraesCS7D01G051800 chr7D 26982048 26983146 1098 True 365.0 388 85.135000 2052 3698 2 chr7D.!!$R6 1646
7 TraesCS7D01G051800 chr7A 27288312 27291888 3576 True 2642.0 4307 92.754000 918 4555 2 chr7A.!!$R4 3637
8 TraesCS7D01G051800 chr7A 27279055 27282559 3504 True 1812.0 3051 84.971000 1001 4547 2 chr7A.!!$R3 3546
9 TraesCS7D01G051800 chr4A 704644595 704648132 3537 True 1781.0 3107 86.844500 964 4547 2 chr4A.!!$R6 3583
10 TraesCS7D01G051800 chr4A 704628522 704629332 810 True 856.0 856 85.887000 3730 4547 1 chr4A.!!$R3 817
11 TraesCS7D01G051800 chr4A 704597446 704598245 799 True 815.0 815 85.226000 3740 4547 1 chr4A.!!$R1 807
12 TraesCS7D01G051800 chr4A 704577581 704578454 873 True 456.0 795 90.895500 3630 4547 2 chr4A.!!$R5 917
13 TraesCS7D01G051800 chr4A 710851414 710852968 1554 True 438.5 520 82.511000 2892 4547 2 chr4A.!!$R7 1655
14 TraesCS7D01G051800 chr4A 704620616 704621225 609 True 414.0 414 79.751000 3929 4547 1 chr4A.!!$R2 618
15 TraesCS7D01G051800 chr2A 738294376 738295164 788 True 1070.0 1070 91.266000 1 784 1 chr2A.!!$R1 783
16 TraesCS7D01G051800 chr5D 490368846 490369552 706 True 1042.0 1042 93.371000 4574 5277 1 chr5D.!!$R1 703
17 TraesCS7D01G051800 chr1D 118880743 118881446 703 False 1027.0 1027 93.079000 4575 5277 1 chr1D.!!$F1 702
18 TraesCS7D01G051800 chr3D 420601766 420602471 705 False 1018.0 1018 92.797000 4575 5277 1 chr3D.!!$F2 702
19 TraesCS7D01G051800 chr3D 105355329 105356037 708 False 994.0 994 92.102000 4575 5277 1 chr3D.!!$F1 702
20 TraesCS7D01G051800 chr6D 33859524 33860240 716 False 1000.0 1000 91.922000 4565 5277 1 chr6D.!!$F1 712
21 TraesCS7D01G051800 chr6D 312347360 312348062 702 True 994.0 994 92.319000 4578 5275 1 chr6D.!!$R1 697
22 TraesCS7D01G051800 chr4D 354204740 354205442 702 True 996.0 996 92.330000 4579 5277 1 chr4D.!!$R1 698
23 TraesCS7D01G051800 chrUn 296087788 296088392 604 False 761.0 761 89.672000 1912 2508 1 chrUn.!!$F1 596
24 TraesCS7D01G051800 chrUn 296092890 296093494 604 False 761.0 761 89.672000 1912 2508 1 chrUn.!!$F2 596
25 TraesCS7D01G051800 chrUn 352685284 352685888 604 False 761.0 761 89.672000 1912 2508 1 chrUn.!!$F3 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 805 0.036732 TTTCGCTGACTCTGCCCATT 59.963 50.000 2.58 0.0 0.00 3.16 F
805 812 0.106819 GACTCTGCCCATTGCTGGAT 60.107 55.000 0.00 0.0 46.37 3.41 F
807 814 0.106868 CTCTGCCCATTGCTGGATCA 60.107 55.000 0.00 0.0 46.37 2.92 F
852 859 0.535335 GGGCAGGTGAATGTCGTCTA 59.465 55.000 0.00 0.0 0.00 2.59 F
854 861 1.067142 GGCAGGTGAATGTCGTCTACA 60.067 52.381 0.00 0.0 43.86 2.74 F
946 953 1.104577 GCTCGCCAGCTACCTACTCT 61.105 60.000 0.00 0.0 43.09 3.24 F
951 958 1.611491 GCCAGCTACCTACTCTGCTAG 59.389 57.143 0.00 0.0 34.10 3.42 F
2013 2099 2.027561 CCTATGAAGAAACGACACCCCA 60.028 50.000 0.00 0.0 0.00 4.96 F
3029 3309 2.383608 GGTCTTCTACCTTGCCCCA 58.616 57.895 0.00 0.0 45.75 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2234 2345 1.686355 AGACGGCTACCATCTCTCTG 58.314 55.000 0.00 0.0 0.00 3.35 R
2785 2918 3.381272 TCTTGCCAGGAAACAAGAAGTTG 59.619 43.478 5.71 0.0 46.89 3.16 R
2815 2952 7.173218 GCCAGCATAAGACTGCAACTATATTAA 59.827 37.037 0.00 0.0 44.77 1.40 R
2822 2959 1.457346 GCCAGCATAAGACTGCAACT 58.543 50.000 0.00 0.0 44.77 3.16 R
2866 3007 8.068380 CAGAAGACAATACTTATGATGCATGTG 58.932 37.037 2.46 0.0 40.23 3.21 R
2888 3029 3.944650 TGCAGCAGAAAACTGTAACAGAA 59.055 39.130 0.00 0.0 37.47 3.02 R
2943 3215 7.833786 AGAATGCAATGATATGACAAAACACT 58.166 30.769 0.00 0.0 0.00 3.55 R
3231 3519 1.625818 CACAGGGAAGGAGCTAACAGT 59.374 52.381 0.00 0.0 0.00 3.55 R
4806 5231 0.620556 TAGCCTTGCCCTTCTTCCTG 59.379 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.747460 TGGTTCGCCTGCTGCATC 60.747 61.111 1.31 0.00 41.33 3.91
92 93 1.667154 CGATGAACTCCTGCTCCCGA 61.667 60.000 0.00 0.00 0.00 5.14
113 114 0.824109 TGGATCTACGCTGAACTGGG 59.176 55.000 0.00 0.00 0.00 4.45
152 153 1.297689 GGAGTGATGCAGCACCTGA 59.702 57.895 30.16 0.00 39.59 3.86
155 156 1.002868 GTGATGCAGCACCTGAGGT 60.003 57.895 24.34 0.00 35.62 3.85
163 164 1.209019 CAGCACCTGAGGTTCAGCTAT 59.791 52.381 13.76 0.00 42.98 2.97
173 174 1.402968 GGTTCAGCTATACCGACACGA 59.597 52.381 1.04 0.00 0.00 4.35
198 199 4.143333 CCGGCAGGTAGGTGTCCG 62.143 72.222 0.00 0.00 37.07 4.79
243 244 2.547855 CCAGCCTGCGCATAGTGTATAA 60.548 50.000 12.24 0.00 37.52 0.98
255 256 7.095229 GCGCATAGTGTATAAATTCATGAGGAA 60.095 37.037 0.30 0.00 40.46 3.36
256 257 8.773645 CGCATAGTGTATAAATTCATGAGGAAA 58.226 33.333 0.00 0.00 39.39 3.13
268 269 9.533831 AAATTCATGAGGAAACTGTAAATAGGT 57.466 29.630 0.00 0.00 44.43 3.08
271 272 7.685481 TCATGAGGAAACTGTAAATAGGTCAA 58.315 34.615 0.00 0.00 44.43 3.18
311 312 7.670916 CAAAGAGAAGCTACTTACATCTTTCG 58.329 38.462 9.78 0.00 33.06 3.46
329 330 3.021269 TCGTGACGCATTTGTAGAACT 57.979 42.857 0.00 0.00 0.00 3.01
330 331 2.729360 TCGTGACGCATTTGTAGAACTG 59.271 45.455 0.00 0.00 0.00 3.16
334 335 4.211374 GTGACGCATTTGTAGAACTGTTCT 59.789 41.667 24.80 24.80 43.72 3.01
370 371 1.525077 GGTCACCACCTTGCAACGA 60.525 57.895 0.00 0.00 40.00 3.85
377 378 2.224426 ACCACCTTGCAACGACATTCTA 60.224 45.455 0.00 0.00 0.00 2.10
378 379 2.416547 CCACCTTGCAACGACATTCTAG 59.583 50.000 0.00 0.00 0.00 2.43
379 380 2.416547 CACCTTGCAACGACATTCTAGG 59.583 50.000 0.00 0.00 0.00 3.02
400 401 2.124695 GGGATCAACGGGAGCACC 60.125 66.667 0.00 0.00 32.12 5.01
424 425 2.445654 GCCTGGGAGGAGGAGGAG 60.446 72.222 0.00 0.00 37.67 3.69
443 444 1.632409 AGGAGCTTGCCATCTTCTTCA 59.368 47.619 0.00 0.00 0.00 3.02
446 447 3.446516 GGAGCTTGCCATCTTCTTCATTT 59.553 43.478 0.00 0.00 0.00 2.32
453 454 6.349243 TGCCATCTTCTTCATTTTGATTGT 57.651 33.333 0.00 0.00 0.00 2.71
460 461 7.490840 TCTTCTTCATTTTGATTGTTGCAAGA 58.509 30.769 0.00 0.00 0.00 3.02
484 485 2.352960 GCTTGGAGAAGATAAGGCAACG 59.647 50.000 0.00 0.00 46.39 4.10
507 508 0.106967 GGGAGGCTGTGGATTCTTCC 60.107 60.000 0.00 0.00 42.94 3.46
536 537 2.039084 GGAGGCAGATGTATAAGTGGGG 59.961 54.545 0.00 0.00 0.00 4.96
537 538 1.421646 AGGCAGATGTATAAGTGGGGC 59.578 52.381 0.00 0.00 0.00 5.80
546 547 1.418908 ATAAGTGGGGCCGGATGGAG 61.419 60.000 5.05 0.00 37.49 3.86
568 569 2.030958 GTCCGTTTGCCACCTACCG 61.031 63.158 0.00 0.00 0.00 4.02
577 578 2.490217 CACCTACCGTCTGAGCCG 59.510 66.667 0.00 0.00 0.00 5.52
593 594 1.528309 CCGTGGCACAAGAAAGGGT 60.528 57.895 19.09 0.00 44.16 4.34
616 617 0.531532 CCCATCTGAGCCGCTAACTG 60.532 60.000 0.00 0.00 0.00 3.16
668 670 1.388133 GGTGGGGCCTTCTTTGGAT 59.612 57.895 0.84 0.00 0.00 3.41
672 674 2.760650 GTGGGGCCTTCTTTGGATAAAG 59.239 50.000 0.84 0.00 43.72 1.85
753 755 5.700722 AACGTTGACGGCTATGATATAGA 57.299 39.130 0.00 0.00 44.95 1.98
762 769 5.067153 ACGGCTATGATATAGAGTGCATCTC 59.933 44.000 7.88 7.88 43.05 2.75
770 777 1.227205 GAGTGCATCTCGGGCTCAG 60.227 63.158 0.00 0.00 33.25 3.35
784 791 1.328986 GGCTCAGAATAGCACTTTCGC 59.671 52.381 0.00 0.00 44.64 4.70
785 792 2.275318 GCTCAGAATAGCACTTTCGCT 58.725 47.619 0.00 0.00 46.26 4.93
786 793 2.030213 GCTCAGAATAGCACTTTCGCTG 59.970 50.000 0.00 0.00 43.68 5.18
787 794 3.515630 CTCAGAATAGCACTTTCGCTGA 58.484 45.455 0.00 0.00 43.68 4.26
788 795 3.254060 TCAGAATAGCACTTTCGCTGAC 58.746 45.455 0.00 0.00 43.68 3.51
789 796 3.056536 TCAGAATAGCACTTTCGCTGACT 60.057 43.478 0.00 0.00 43.68 3.41
790 797 3.305629 CAGAATAGCACTTTCGCTGACTC 59.694 47.826 0.00 0.00 43.68 3.36
791 798 3.194542 AGAATAGCACTTTCGCTGACTCT 59.805 43.478 0.00 0.00 43.68 3.24
792 799 2.354109 TAGCACTTTCGCTGACTCTG 57.646 50.000 0.00 0.00 43.68 3.35
793 800 0.948141 AGCACTTTCGCTGACTCTGC 60.948 55.000 0.00 0.00 41.85 4.26
794 801 1.905922 GCACTTTCGCTGACTCTGCC 61.906 60.000 2.58 0.00 0.00 4.85
795 802 1.004440 ACTTTCGCTGACTCTGCCC 60.004 57.895 2.58 0.00 0.00 5.36
796 803 1.004560 CTTTCGCTGACTCTGCCCA 60.005 57.895 2.58 0.00 0.00 5.36
797 804 0.392193 CTTTCGCTGACTCTGCCCAT 60.392 55.000 2.58 0.00 0.00 4.00
798 805 0.036732 TTTCGCTGACTCTGCCCATT 59.963 50.000 2.58 0.00 0.00 3.16
799 806 0.674581 TTCGCTGACTCTGCCCATTG 60.675 55.000 2.58 0.00 0.00 2.82
800 807 2.758089 CGCTGACTCTGCCCATTGC 61.758 63.158 2.58 0.00 41.77 3.56
801 808 1.378250 GCTGACTCTGCCCATTGCT 60.378 57.895 0.00 0.00 42.00 3.91
802 809 1.654954 GCTGACTCTGCCCATTGCTG 61.655 60.000 0.00 0.00 42.00 4.41
803 810 1.001764 TGACTCTGCCCATTGCTGG 60.002 57.895 0.00 0.00 42.73 4.85
804 811 1.300963 GACTCTGCCCATTGCTGGA 59.699 57.895 0.00 0.00 46.37 3.86
805 812 0.106819 GACTCTGCCCATTGCTGGAT 60.107 55.000 0.00 0.00 46.37 3.41
806 813 0.106819 ACTCTGCCCATTGCTGGATC 60.107 55.000 0.00 0.00 46.37 3.36
807 814 0.106868 CTCTGCCCATTGCTGGATCA 60.107 55.000 0.00 0.00 46.37 2.92
808 815 0.554305 TCTGCCCATTGCTGGATCAT 59.446 50.000 0.00 0.00 46.37 2.45
809 816 1.063492 TCTGCCCATTGCTGGATCATT 60.063 47.619 0.00 0.00 46.37 2.57
810 817 1.760613 CTGCCCATTGCTGGATCATTT 59.239 47.619 0.00 0.00 46.37 2.32
811 818 1.483004 TGCCCATTGCTGGATCATTTG 59.517 47.619 0.00 0.00 46.37 2.32
812 819 1.758280 GCCCATTGCTGGATCATTTGA 59.242 47.619 0.00 0.00 46.37 2.69
813 820 2.367567 GCCCATTGCTGGATCATTTGAT 59.632 45.455 0.00 0.00 46.37 2.57
814 821 3.181458 GCCCATTGCTGGATCATTTGATT 60.181 43.478 0.00 0.00 46.37 2.57
815 822 4.039488 GCCCATTGCTGGATCATTTGATTA 59.961 41.667 0.00 0.00 46.37 1.75
816 823 5.279809 GCCCATTGCTGGATCATTTGATTAT 60.280 40.000 0.00 0.00 46.37 1.28
817 824 6.163476 CCCATTGCTGGATCATTTGATTATG 58.837 40.000 0.00 0.00 46.37 1.90
818 825 6.239487 CCCATTGCTGGATCATTTGATTATGT 60.239 38.462 0.00 0.00 46.37 2.29
819 826 7.039574 CCCATTGCTGGATCATTTGATTATGTA 60.040 37.037 0.00 0.00 46.37 2.29
820 827 8.528643 CCATTGCTGGATCATTTGATTATGTAT 58.471 33.333 0.00 0.00 46.37 2.29
821 828 9.569167 CATTGCTGGATCATTTGATTATGTATC 57.431 33.333 0.00 0.00 34.37 2.24
822 829 7.368480 TGCTGGATCATTTGATTATGTATCG 57.632 36.000 0.00 0.00 35.94 2.92
823 830 6.936335 TGCTGGATCATTTGATTATGTATCGT 59.064 34.615 0.00 0.00 35.94 3.73
824 831 7.095102 TGCTGGATCATTTGATTATGTATCGTG 60.095 37.037 0.00 0.00 35.94 4.35
825 832 7.132694 TGGATCATTTGATTATGTATCGTGC 57.867 36.000 0.00 0.00 35.94 5.34
826 833 6.709846 TGGATCATTTGATTATGTATCGTGCA 59.290 34.615 0.00 0.00 35.94 4.57
827 834 7.095102 TGGATCATTTGATTATGTATCGTGCAG 60.095 37.037 0.00 0.00 35.94 4.41
828 835 5.989249 TCATTTGATTATGTATCGTGCAGC 58.011 37.500 0.00 0.00 35.94 5.25
829 836 5.526846 TCATTTGATTATGTATCGTGCAGCA 59.473 36.000 0.00 0.00 35.94 4.41
830 837 5.809719 TTTGATTATGTATCGTGCAGCAA 57.190 34.783 0.00 0.00 35.94 3.91
831 838 6.375945 TTTGATTATGTATCGTGCAGCAAT 57.624 33.333 0.00 0.00 35.94 3.56
832 839 5.596268 TGATTATGTATCGTGCAGCAATC 57.404 39.130 0.00 0.00 35.94 2.67
833 840 4.150451 TGATTATGTATCGTGCAGCAATCG 59.850 41.667 0.00 0.00 35.94 3.34
834 841 1.220529 ATGTATCGTGCAGCAATCGG 58.779 50.000 0.00 0.00 0.00 4.18
835 842 0.809636 TGTATCGTGCAGCAATCGGG 60.810 55.000 0.00 0.00 0.00 5.14
836 843 1.887242 TATCGTGCAGCAATCGGGC 60.887 57.895 0.00 0.00 0.00 6.13
837 844 2.585791 TATCGTGCAGCAATCGGGCA 62.586 55.000 0.00 0.00 35.83 5.36
838 845 4.170062 CGTGCAGCAATCGGGCAG 62.170 66.667 0.00 0.00 38.38 4.85
839 846 3.818787 GTGCAGCAATCGGGCAGG 61.819 66.667 0.00 0.00 38.38 4.85
840 847 4.349503 TGCAGCAATCGGGCAGGT 62.350 61.111 0.00 0.00 35.83 4.00
841 848 3.818787 GCAGCAATCGGGCAGGTG 61.819 66.667 0.00 0.00 35.83 4.00
842 849 2.046023 CAGCAATCGGGCAGGTGA 60.046 61.111 0.00 0.00 35.83 4.02
843 850 1.675310 CAGCAATCGGGCAGGTGAA 60.675 57.895 0.00 0.00 35.83 3.18
844 851 1.033746 CAGCAATCGGGCAGGTGAAT 61.034 55.000 0.00 0.00 35.83 2.57
845 852 1.033746 AGCAATCGGGCAGGTGAATG 61.034 55.000 0.00 0.00 35.83 2.67
846 853 1.315257 GCAATCGGGCAGGTGAATGT 61.315 55.000 0.00 0.00 0.00 2.71
847 854 0.734889 CAATCGGGCAGGTGAATGTC 59.265 55.000 0.00 0.00 0.00 3.06
848 855 0.744414 AATCGGGCAGGTGAATGTCG 60.744 55.000 0.00 0.00 0.00 4.35
849 856 1.899437 ATCGGGCAGGTGAATGTCGT 61.899 55.000 0.00 0.00 0.00 4.34
850 857 2.100631 CGGGCAGGTGAATGTCGTC 61.101 63.158 0.00 0.00 0.00 4.20
851 858 1.296715 GGGCAGGTGAATGTCGTCT 59.703 57.895 0.00 0.00 0.00 4.18
852 859 0.535335 GGGCAGGTGAATGTCGTCTA 59.465 55.000 0.00 0.00 0.00 2.59
853 860 1.641577 GGCAGGTGAATGTCGTCTAC 58.358 55.000 0.00 0.00 0.00 2.59
854 861 1.067142 GGCAGGTGAATGTCGTCTACA 60.067 52.381 0.00 0.00 43.86 2.74
855 862 2.263077 GCAGGTGAATGTCGTCTACAG 58.737 52.381 0.00 0.00 42.70 2.74
856 863 2.094700 GCAGGTGAATGTCGTCTACAGA 60.095 50.000 0.00 0.00 42.70 3.41
857 864 3.614150 GCAGGTGAATGTCGTCTACAGAA 60.614 47.826 0.00 0.00 42.70 3.02
858 865 4.748892 CAGGTGAATGTCGTCTACAGAAT 58.251 43.478 0.00 0.00 42.70 2.40
859 866 5.678871 GCAGGTGAATGTCGTCTACAGAATA 60.679 44.000 0.00 0.00 42.70 1.75
860 867 5.974158 CAGGTGAATGTCGTCTACAGAATAG 59.026 44.000 0.00 0.00 42.70 1.73
861 868 5.652891 AGGTGAATGTCGTCTACAGAATAGT 59.347 40.000 0.00 0.00 42.70 2.12
862 869 6.153000 AGGTGAATGTCGTCTACAGAATAGTT 59.847 38.462 0.00 0.00 42.70 2.24
863 870 6.472808 GGTGAATGTCGTCTACAGAATAGTTC 59.527 42.308 0.00 0.00 42.70 3.01
864 871 6.472808 GTGAATGTCGTCTACAGAATAGTTCC 59.527 42.308 0.00 0.00 42.70 3.62
865 872 4.611310 TGTCGTCTACAGAATAGTTCCG 57.389 45.455 0.00 0.00 33.01 4.30
866 873 3.376234 TGTCGTCTACAGAATAGTTCCGG 59.624 47.826 0.00 0.00 33.01 5.14
867 874 3.624861 GTCGTCTACAGAATAGTTCCGGA 59.375 47.826 0.00 0.00 0.00 5.14
868 875 4.095483 GTCGTCTACAGAATAGTTCCGGAA 59.905 45.833 14.35 14.35 0.00 4.30
869 876 4.701651 TCGTCTACAGAATAGTTCCGGAAA 59.298 41.667 20.79 4.38 0.00 3.13
870 877 5.183713 TCGTCTACAGAATAGTTCCGGAAAA 59.816 40.000 20.79 10.95 0.00 2.29
871 878 5.515626 CGTCTACAGAATAGTTCCGGAAAAG 59.484 44.000 20.79 6.35 0.00 2.27
872 879 6.624423 CGTCTACAGAATAGTTCCGGAAAAGA 60.624 42.308 20.79 7.47 0.00 2.52
873 880 7.095270 GTCTACAGAATAGTTCCGGAAAAGAA 58.905 38.462 20.79 4.92 0.00 2.52
874 881 7.601508 GTCTACAGAATAGTTCCGGAAAAGAAA 59.398 37.037 20.79 2.96 0.00 2.52
875 882 8.152246 TCTACAGAATAGTTCCGGAAAAGAAAA 58.848 33.333 20.79 1.04 0.00 2.29
876 883 7.203255 ACAGAATAGTTCCGGAAAAGAAAAG 57.797 36.000 20.79 9.94 0.00 2.27
877 884 6.771267 ACAGAATAGTTCCGGAAAAGAAAAGT 59.229 34.615 20.79 10.60 0.00 2.66
878 885 7.935210 ACAGAATAGTTCCGGAAAAGAAAAGTA 59.065 33.333 20.79 2.45 0.00 2.24
879 886 8.228464 CAGAATAGTTCCGGAAAAGAAAAGTAC 58.772 37.037 20.79 2.54 0.00 2.73
880 887 7.935210 AGAATAGTTCCGGAAAAGAAAAGTACA 59.065 33.333 20.79 0.00 0.00 2.90
881 888 5.746307 AGTTCCGGAAAAGAAAAGTACAC 57.254 39.130 20.79 1.70 0.00 2.90
882 889 4.271776 AGTTCCGGAAAAGAAAAGTACACG 59.728 41.667 20.79 0.00 0.00 4.49
883 890 3.132925 TCCGGAAAAGAAAAGTACACGG 58.867 45.455 0.00 0.00 40.09 4.94
884 891 2.224784 CCGGAAAAGAAAAGTACACGGG 59.775 50.000 0.00 0.00 35.50 5.28
885 892 2.224784 CGGAAAAGAAAAGTACACGGGG 59.775 50.000 0.00 0.00 0.00 5.73
886 893 2.030540 GGAAAAGAAAAGTACACGGGGC 60.031 50.000 0.00 0.00 0.00 5.80
887 894 2.651382 AAAGAAAAGTACACGGGGCT 57.349 45.000 0.00 0.00 0.00 5.19
888 895 3.775261 AAAGAAAAGTACACGGGGCTA 57.225 42.857 0.00 0.00 0.00 3.93
889 896 2.756840 AGAAAAGTACACGGGGCTAC 57.243 50.000 0.00 0.00 0.00 3.58
890 897 1.277273 AGAAAAGTACACGGGGCTACC 59.723 52.381 0.00 0.00 0.00 3.18
900 907 2.904131 GGGCTACCCACTGAGCTC 59.096 66.667 6.82 6.82 44.65 4.09
901 908 1.990060 GGGCTACCCACTGAGCTCA 60.990 63.158 17.19 17.19 44.65 4.26
902 909 1.965754 GGGCTACCCACTGAGCTCAG 61.966 65.000 36.57 36.57 44.65 3.35
912 919 2.202730 GAGCTCAGCTCGCTCCAC 60.203 66.667 11.89 0.00 45.85 4.02
913 920 2.679642 AGCTCAGCTCGCTCCACT 60.680 61.111 0.00 0.00 30.62 4.00
914 921 2.508887 GCTCAGCTCGCTCCACTG 60.509 66.667 0.00 0.00 0.00 3.66
915 922 2.508887 CTCAGCTCGCTCCACTGC 60.509 66.667 0.00 0.00 0.00 4.40
916 923 4.074526 TCAGCTCGCTCCACTGCC 62.075 66.667 0.00 0.00 0.00 4.85
946 953 1.104577 GCTCGCCAGCTACCTACTCT 61.105 60.000 0.00 0.00 43.09 3.24
951 958 1.611491 GCCAGCTACCTACTCTGCTAG 59.389 57.143 0.00 0.00 34.10 3.42
952 959 2.235016 CCAGCTACCTACTCTGCTAGG 58.765 57.143 0.00 0.00 39.55 3.02
1150 1158 3.077556 CCTCCACCTCCACCTCCG 61.078 72.222 0.00 0.00 0.00 4.63
1151 1159 2.283966 CTCCACCTCCACCTCCGT 60.284 66.667 0.00 0.00 0.00 4.69
1176 1184 4.516195 GAGCCGCCGGAGTTCTCC 62.516 72.222 7.68 8.66 0.00 3.71
1358 1373 4.142730 GGACTCACAAGATGCAAATCTGTC 60.143 45.833 0.00 0.00 0.00 3.51
1365 1380 4.675190 AGATGCAAATCTGTCTCGTTTG 57.325 40.909 0.00 0.00 36.26 2.93
1373 1388 2.397413 CTGTCTCGTTTGGCCCACCT 62.397 60.000 0.00 0.00 36.63 4.00
1405 1420 3.535561 CACAGTGGAATCTGGGTGTATC 58.464 50.000 0.00 0.00 39.48 2.24
1590 1656 9.807649 ATTCATGTACATTTTGAAGATAAAGCC 57.192 29.630 5.37 0.00 33.26 4.35
1591 1657 8.579850 TCATGTACATTTTGAAGATAAAGCCT 57.420 30.769 5.37 0.00 0.00 4.58
1592 1658 8.677300 TCATGTACATTTTGAAGATAAAGCCTC 58.323 33.333 5.37 0.00 0.00 4.70
1593 1659 7.994425 TGTACATTTTGAAGATAAAGCCTCA 57.006 32.000 0.00 0.00 0.00 3.86
1594 1660 7.816640 TGTACATTTTGAAGATAAAGCCTCAC 58.183 34.615 0.00 0.00 0.00 3.51
1595 1661 6.899393 ACATTTTGAAGATAAAGCCTCACA 57.101 33.333 0.00 0.00 0.00 3.58
1596 1662 7.472334 ACATTTTGAAGATAAAGCCTCACAT 57.528 32.000 0.00 0.00 0.00 3.21
1597 1663 7.899973 ACATTTTGAAGATAAAGCCTCACATT 58.100 30.769 0.00 0.00 0.00 2.71
1598 1664 7.816031 ACATTTTGAAGATAAAGCCTCACATTG 59.184 33.333 0.00 0.00 0.00 2.82
1599 1665 7.523293 TTTTGAAGATAAAGCCTCACATTGA 57.477 32.000 0.00 0.00 0.00 2.57
1600 1666 6.748333 TTGAAGATAAAGCCTCACATTGAG 57.252 37.500 0.00 0.00 43.91 3.02
1601 1667 4.637534 TGAAGATAAAGCCTCACATTGAGC 59.362 41.667 0.00 0.00 42.98 4.26
1602 1668 4.500499 AGATAAAGCCTCACATTGAGCT 57.500 40.909 0.00 0.00 42.98 4.09
1603 1669 4.197750 AGATAAAGCCTCACATTGAGCTG 58.802 43.478 0.00 0.00 42.98 4.24
1604 1670 2.283145 AAAGCCTCACATTGAGCTGT 57.717 45.000 0.00 0.00 42.98 4.40
1605 1671 3.423539 AAAGCCTCACATTGAGCTGTA 57.576 42.857 0.00 0.00 42.98 2.74
1782 1859 6.131961 AGGTGAATTTCTCTAATTCCCCATG 58.868 40.000 12.22 0.00 46.98 3.66
1942 2025 6.036191 GTCGACCAGAAAAACCTATTGAGATC 59.964 42.308 3.51 0.00 0.00 2.75
1945 2028 7.928706 CGACCAGAAAAACCTATTGAGATCTAT 59.071 37.037 0.00 0.00 0.00 1.98
1974 2057 4.264352 TGAAGGGTATGGGCTTTCTTTCAT 60.264 41.667 0.00 0.00 0.00 2.57
2012 2098 2.235402 TCCTATGAAGAAACGACACCCC 59.765 50.000 0.00 0.00 0.00 4.95
2013 2099 2.027561 CCTATGAAGAAACGACACCCCA 60.028 50.000 0.00 0.00 0.00 4.96
2028 2114 7.284074 ACGACACCCCACATATTTATAATTGA 58.716 34.615 0.00 0.00 0.00 2.57
2148 2254 6.657117 TCCATTTTGTCGAAAGGTGAATATCA 59.343 34.615 0.00 0.00 0.00 2.15
2234 2345 7.011857 TGTTTTTGCCATGTAAAATTTCAGGTC 59.988 33.333 6.10 0.00 28.52 3.85
2493 2608 5.756195 TTGCAGCAGAATCACCATTATAC 57.244 39.130 0.00 0.00 0.00 1.47
2510 2633 8.982723 ACCATTATACAATACTCACTCTGTTCT 58.017 33.333 0.00 0.00 0.00 3.01
2511 2634 9.254133 CCATTATACAATACTCACTCTGTTCTG 57.746 37.037 0.00 0.00 0.00 3.02
2516 2639 9.950496 ATACAATACTCACTCTGTTCTGAAAAT 57.050 29.630 0.00 0.00 0.00 1.82
2517 2640 8.316640 ACAATACTCACTCTGTTCTGAAAATC 57.683 34.615 0.00 0.00 0.00 2.17
2525 2648 6.643770 CACTCTGTTCTGAAAATCCAAAATGG 59.356 38.462 0.00 0.00 39.43 3.16
2680 2813 7.226720 ACTTACTTGGTGATTTACTGTTGTGAG 59.773 37.037 0.00 0.00 0.00 3.51
2693 2826 9.549078 TTTACTGTTGTGAGTGTTGATGTATTA 57.451 29.630 0.00 0.00 0.00 0.98
2733 2866 7.542477 GTCAAACTTGATGAAGATCGACTTAGA 59.458 37.037 0.00 0.00 39.73 2.10
2785 2918 7.883833 GGAACAGAGGGGGTATTAATATTTCTC 59.116 40.741 0.00 4.69 0.00 2.87
2866 3007 7.273381 GCCATGTGTTTTGTCATTCATTAGTAC 59.727 37.037 0.00 0.00 0.00 2.73
2871 3012 9.117145 GTGTTTTGTCATTCATTAGTACACATG 57.883 33.333 0.00 0.00 34.06 3.21
2879 3020 9.558396 TCATTCATTAGTACACATGCATCATAA 57.442 29.630 0.00 0.00 0.00 1.90
2888 3029 8.206867 AGTACACATGCATCATAAGTATTGTCT 58.793 33.333 0.00 0.00 0.00 3.41
2943 3215 6.057533 CCATTCATTAGTAAGCAGACATGGA 58.942 40.000 0.00 0.00 30.83 3.41
2956 3228 4.455533 GCAGACATGGAGTGTTTTGTCATA 59.544 41.667 0.00 0.00 42.36 2.15
2958 3230 6.676456 GCAGACATGGAGTGTTTTGTCATATC 60.676 42.308 0.00 0.00 42.36 1.63
2982 3256 3.083293 TGCATTCTTCTGCTGCAATGTA 58.917 40.909 3.02 0.66 42.53 2.29
3010 3285 6.283694 TGCATTCATTAGTCAGACATAGGAC 58.716 40.000 2.66 0.00 0.00 3.85
3012 3287 5.515797 TTCATTAGTCAGACATAGGACGG 57.484 43.478 2.66 0.00 39.01 4.79
3029 3309 2.383608 GGTCTTCTACCTTGCCCCA 58.616 57.895 0.00 0.00 45.75 4.96
3181 3469 3.200483 GGACACATACGGTTTGTATCCC 58.800 50.000 15.51 8.45 41.93 3.85
3211 3499 4.380843 TTTTATCAGACCTTGCTTCCCA 57.619 40.909 0.00 0.00 0.00 4.37
3231 3519 2.409064 TGTTCCTGACAGGGTCCTTA 57.591 50.000 21.56 0.00 35.59 2.69
3307 3596 5.270893 TGCTATCGCTTGGTCTATTTACA 57.729 39.130 0.00 0.00 36.97 2.41
3317 3606 9.095065 CGCTTGGTCTATTTACAGTAAGTAATT 57.905 33.333 0.00 0.00 42.03 1.40
3381 3713 8.451908 AGCACATTACCTTTGATTTATAGGTC 57.548 34.615 0.00 0.00 41.28 3.85
3424 3757 9.462174 TGTTCATGATTTTGTTACTGTTGAATC 57.538 29.630 0.00 0.00 0.00 2.52
3441 3774 7.988737 TGTTGAATCAAGTATGATGGTTCATC 58.011 34.615 0.00 3.96 44.80 2.92
3698 4034 3.321111 TGGGCATACGAGGTCTAATTCTC 59.679 47.826 0.00 0.00 0.00 2.87
3709 4046 3.709141 GGTCTAATTCTCCTCTCCTGCTT 59.291 47.826 0.00 0.00 0.00 3.91
3766 4103 3.638860 TCTCGTATGGTACCAGTTCCAT 58.361 45.455 21.41 12.78 45.10 3.41
3776 4113 2.632537 ACCAGTTCCATAACCTGACCT 58.367 47.619 0.00 0.00 36.15 3.85
3910 4247 4.621991 ACGCATCTGTAAATAGGTAGCTG 58.378 43.478 4.27 0.00 0.00 4.24
4005 4398 4.517952 TGTAGCATCAAACAACATTGGG 57.482 40.909 0.00 0.00 0.00 4.12
4133 4533 4.119136 GTTGTTGCTAAACCTGTGCATTT 58.881 39.130 0.00 0.00 36.55 2.32
4219 4619 1.783071 ACACGGGGGTGAAAATGTTT 58.217 45.000 0.62 0.00 0.00 2.83
4468 4880 4.663636 ATTGTCGAAGTTCCGTCAATTC 57.336 40.909 11.30 0.00 42.38 2.17
4511 4936 5.757850 AACTGTGTGGAGATGAAACTTTC 57.242 39.130 0.00 0.00 0.00 2.62
4555 4980 6.974622 GGGTTTATGAAGCAAAGATGTACATG 59.025 38.462 14.43 0.83 34.98 3.21
4556 4981 7.362920 GGGTTTATGAAGCAAAGATGTACATGT 60.363 37.037 14.43 6.34 34.98 3.21
4557 4982 7.698130 GGTTTATGAAGCAAAGATGTACATGTC 59.302 37.037 14.43 0.00 33.52 3.06
4558 4983 4.926860 TGAAGCAAAGATGTACATGTCG 57.073 40.909 14.43 5.58 0.00 4.35
4559 4984 3.684305 TGAAGCAAAGATGTACATGTCGG 59.316 43.478 14.43 6.30 0.00 4.79
4560 4985 2.632377 AGCAAAGATGTACATGTCGGG 58.368 47.619 14.43 3.77 0.00 5.14
4561 4986 1.670811 GCAAAGATGTACATGTCGGGG 59.329 52.381 14.43 1.28 0.00 5.73
4562 4987 1.670811 CAAAGATGTACATGTCGGGGC 59.329 52.381 14.43 0.00 0.00 5.80
4563 4988 1.204146 AAGATGTACATGTCGGGGCT 58.796 50.000 14.43 0.00 0.00 5.19
4564 4989 0.465705 AGATGTACATGTCGGGGCTG 59.534 55.000 14.43 0.00 0.00 4.85
4565 4990 0.178068 GATGTACATGTCGGGGCTGT 59.822 55.000 14.43 0.00 0.00 4.40
4566 4991 0.618458 ATGTACATGTCGGGGCTGTT 59.382 50.000 7.78 0.00 0.00 3.16
4567 4992 0.398696 TGTACATGTCGGGGCTGTTT 59.601 50.000 0.00 0.00 0.00 2.83
4568 4993 0.802494 GTACATGTCGGGGCTGTTTG 59.198 55.000 0.00 0.00 0.00 2.93
4569 4994 0.322098 TACATGTCGGGGCTGTTTGG 60.322 55.000 0.00 0.00 0.00 3.28
4570 4995 1.603455 CATGTCGGGGCTGTTTGGT 60.603 57.895 0.00 0.00 0.00 3.67
4571 4996 1.152830 ATGTCGGGGCTGTTTGGTT 59.847 52.632 0.00 0.00 0.00 3.67
4572 4997 1.178534 ATGTCGGGGCTGTTTGGTTG 61.179 55.000 0.00 0.00 0.00 3.77
4576 5001 2.736531 GGGCTGTTTGGTTGCTGG 59.263 61.111 0.00 0.00 0.00 4.85
4605 5030 1.087202 GGTGCGACATATGCCAACGA 61.087 55.000 1.58 0.00 0.00 3.85
4629 5054 2.378038 GCTTATCATTGTGGGAGCCAA 58.622 47.619 0.00 0.00 34.18 4.52
4643 5068 0.464036 AGCCAATAAGACATCGCCGA 59.536 50.000 0.00 0.00 0.00 5.54
4677 5102 5.056480 CGGGATAAAGTGAAGACATGCATA 58.944 41.667 0.00 0.00 0.00 3.14
4738 5163 0.253160 ACACCCCTAATCCTGCTCCA 60.253 55.000 0.00 0.00 0.00 3.86
4806 5231 2.079925 CTCCTTGAGCTGTTTGGCTAC 58.920 52.381 0.00 0.00 43.20 3.58
4913 5348 2.263545 GGTTTATATAGGCCGACCCCT 58.736 52.381 0.00 0.00 39.05 4.79
5020 5455 4.021925 GACTGCCGGCCTCTTGGT 62.022 66.667 26.77 12.69 35.27 3.67
5156 5591 0.029567 CTCTCGCTGTAGCCTTACCG 59.970 60.000 0.00 0.00 37.91 4.02
5190 5625 4.389992 CCTTAATGATGCGCATACTTCGAT 59.610 41.667 25.40 7.07 35.78 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.664025 TTCATCGACGGCAGCCAGG 62.664 63.158 13.30 0.00 0.00 4.45
92 93 1.478510 CCAGTTCAGCGTAGATCCAGT 59.521 52.381 0.00 0.00 0.00 4.00
113 114 4.211502 GCCATGCACCAATCCGCC 62.212 66.667 0.00 0.00 0.00 6.13
152 153 1.404391 CGTGTCGGTATAGCTGAACCT 59.596 52.381 15.10 0.00 33.65 3.50
155 156 2.096980 CACTCGTGTCGGTATAGCTGAA 59.903 50.000 0.00 0.00 33.65 3.02
163 164 1.303799 GGAGCTCACTCGTGTCGGTA 61.304 60.000 17.19 0.00 44.48 4.02
173 174 2.037367 TACCTGCCGGAGCTCACT 59.963 61.111 17.19 0.00 40.80 3.41
223 224 2.438868 TATACACTATGCGCAGGCTG 57.561 50.000 18.32 10.94 40.82 4.85
231 232 9.884465 GTTTCCTCATGAATTTATACACTATGC 57.116 33.333 0.00 0.00 31.67 3.14
243 244 9.178758 GACCTATTTACAGTTTCCTCATGAATT 57.821 33.333 0.00 0.00 31.67 2.17
278 279 9.231297 TGTAAGTAGCTTCTCTTTGCATAAATT 57.769 29.630 0.00 0.00 0.00 1.82
283 284 6.648192 AGATGTAAGTAGCTTCTCTTTGCAT 58.352 36.000 0.00 3.96 0.00 3.96
288 289 6.809196 CACGAAAGATGTAAGTAGCTTCTCTT 59.191 38.462 0.00 0.00 0.00 2.85
296 297 4.163552 TGCGTCACGAAAGATGTAAGTAG 58.836 43.478 0.00 0.00 0.00 2.57
311 312 4.211374 AGAACAGTTCTACAAATGCGTCAC 59.789 41.667 14.58 0.00 38.49 3.67
370 371 3.682718 CGTTGATCCCTTGCCTAGAATGT 60.683 47.826 0.00 0.00 0.00 2.71
377 378 1.915078 CTCCCGTTGATCCCTTGCCT 61.915 60.000 0.00 0.00 0.00 4.75
378 379 1.452108 CTCCCGTTGATCCCTTGCC 60.452 63.158 0.00 0.00 0.00 4.52
379 380 2.115291 GCTCCCGTTGATCCCTTGC 61.115 63.158 0.00 0.00 0.00 4.01
424 425 2.119801 TGAAGAAGATGGCAAGCTCC 57.880 50.000 0.00 0.00 0.00 4.70
443 444 5.464030 AGCTCTCTTGCAACAATCAAAAT 57.536 34.783 0.00 0.00 34.99 1.82
446 447 3.005050 CCAAGCTCTCTTGCAACAATCAA 59.995 43.478 0.00 0.00 46.38 2.57
453 454 2.369860 TCTTCTCCAAGCTCTCTTGCAA 59.630 45.455 0.00 0.00 46.38 4.08
460 461 3.110705 TGCCTTATCTTCTCCAAGCTCT 58.889 45.455 0.00 0.00 0.00 4.09
468 469 2.280628 CACCCGTTGCCTTATCTTCTC 58.719 52.381 0.00 0.00 0.00 2.87
484 485 2.558380 GAATCCACAGCCTCCCACCC 62.558 65.000 0.00 0.00 0.00 4.61
507 508 0.617413 ACATCTGCCTCCTTCCACTG 59.383 55.000 0.00 0.00 0.00 3.66
508 509 2.254152 TACATCTGCCTCCTTCCACT 57.746 50.000 0.00 0.00 0.00 4.00
510 511 4.101585 CACTTATACATCTGCCTCCTTCCA 59.898 45.833 0.00 0.00 0.00 3.53
519 520 1.878102 CGGCCCCACTTATACATCTGC 60.878 57.143 0.00 0.00 0.00 4.26
546 547 2.438951 TAGGTGGCAAACGGACGGAC 62.439 60.000 0.00 0.00 0.00 4.79
553 554 1.005394 AGACGGTAGGTGGCAAACG 60.005 57.895 0.00 0.00 0.00 3.60
558 559 2.184579 GCTCAGACGGTAGGTGGC 59.815 66.667 0.00 0.00 0.00 5.01
568 569 2.280797 TTGTGCCACGGCTCAGAC 60.281 61.111 12.19 1.49 43.85 3.51
577 578 0.668535 GACACCCTTTCTTGTGCCAC 59.331 55.000 0.00 0.00 35.90 5.01
638 640 1.682005 CCCCACCATGATGCGGTTT 60.682 57.895 0.00 0.00 33.25 3.27
658 660 5.920193 TTCCATGCCTTTATCCAAAGAAG 57.080 39.130 0.00 0.00 43.32 2.85
668 670 3.525609 TGGACAGGTATTCCATGCCTTTA 59.474 43.478 0.00 0.00 43.28 1.85
672 674 2.435372 TTGGACAGGTATTCCATGCC 57.565 50.000 0.00 0.00 42.88 4.40
714 716 1.447140 TTTCTCGCGATTCCCACCG 60.447 57.895 10.36 0.00 0.00 4.94
753 755 1.260538 TTCTGAGCCCGAGATGCACT 61.261 55.000 0.00 0.00 0.00 4.40
762 769 1.936547 GAAAGTGCTATTCTGAGCCCG 59.063 52.381 0.00 0.00 42.11 6.13
770 777 3.305629 CAGAGTCAGCGAAAGTGCTATTC 59.694 47.826 0.00 0.00 45.23 1.75
790 797 7.426139 AATCAAATGATCCAGCAATGGGCAG 62.426 44.000 0.00 0.00 38.34 4.85
791 798 5.667768 AATCAAATGATCCAGCAATGGGCA 61.668 41.667 0.00 0.00 38.34 5.36
792 799 1.758280 TCAAATGATCCAGCAATGGGC 59.242 47.619 0.00 0.00 45.30 5.36
793 800 4.682778 AATCAAATGATCCAGCAATGGG 57.317 40.909 0.00 0.00 32.75 4.00
794 801 6.755206 ACATAATCAAATGATCCAGCAATGG 58.245 36.000 0.00 0.00 32.75 3.16
795 802 9.569167 GATACATAATCAAATGATCCAGCAATG 57.431 33.333 0.00 0.00 34.46 2.82
796 803 8.456471 CGATACATAATCAAATGATCCAGCAAT 58.544 33.333 0.00 0.00 33.87 3.56
797 804 7.445096 ACGATACATAATCAAATGATCCAGCAA 59.555 33.333 0.00 0.00 33.87 3.91
798 805 6.936335 ACGATACATAATCAAATGATCCAGCA 59.064 34.615 0.00 0.00 33.87 4.41
799 806 7.239271 CACGATACATAATCAAATGATCCAGC 58.761 38.462 0.00 0.00 33.87 4.85
800 807 7.095102 TGCACGATACATAATCAAATGATCCAG 60.095 37.037 0.00 0.00 33.87 3.86
801 808 6.709846 TGCACGATACATAATCAAATGATCCA 59.290 34.615 0.00 0.00 33.87 3.41
802 809 7.132694 TGCACGATACATAATCAAATGATCC 57.867 36.000 0.00 0.00 33.87 3.36
803 810 6.740002 GCTGCACGATACATAATCAAATGATC 59.260 38.462 0.00 0.00 33.87 2.92
804 811 6.205270 TGCTGCACGATACATAATCAAATGAT 59.795 34.615 0.00 0.00 33.87 2.45
805 812 5.526846 TGCTGCACGATACATAATCAAATGA 59.473 36.000 0.00 0.00 33.87 2.57
806 813 5.750650 TGCTGCACGATACATAATCAAATG 58.249 37.500 0.00 0.00 33.87 2.32
807 814 6.375945 TTGCTGCACGATACATAATCAAAT 57.624 33.333 0.00 0.00 33.87 2.32
808 815 5.809719 TTGCTGCACGATACATAATCAAA 57.190 34.783 0.00 0.00 33.87 2.69
809 816 5.333263 CGATTGCTGCACGATACATAATCAA 60.333 40.000 0.00 0.00 33.87 2.57
810 817 4.150451 CGATTGCTGCACGATACATAATCA 59.850 41.667 0.00 0.00 33.87 2.57
811 818 4.434725 CCGATTGCTGCACGATACATAATC 60.435 45.833 13.37 4.93 0.00 1.75
812 819 3.433274 CCGATTGCTGCACGATACATAAT 59.567 43.478 13.37 0.00 0.00 1.28
813 820 2.799978 CCGATTGCTGCACGATACATAA 59.200 45.455 13.37 0.00 0.00 1.90
814 821 2.403259 CCGATTGCTGCACGATACATA 58.597 47.619 13.37 0.00 0.00 2.29
815 822 1.220529 CCGATTGCTGCACGATACAT 58.779 50.000 13.37 0.00 0.00 2.29
816 823 0.809636 CCCGATTGCTGCACGATACA 60.810 55.000 13.37 0.00 0.00 2.29
817 824 1.934463 CCCGATTGCTGCACGATAC 59.066 57.895 13.37 0.00 0.00 2.24
818 825 1.887242 GCCCGATTGCTGCACGATA 60.887 57.895 13.37 0.00 0.00 2.92
819 826 3.204827 GCCCGATTGCTGCACGAT 61.205 61.111 13.37 0.22 0.00 3.73
820 827 4.695993 TGCCCGATTGCTGCACGA 62.696 61.111 13.37 0.00 0.00 4.35
821 828 4.170062 CTGCCCGATTGCTGCACG 62.170 66.667 0.00 3.39 0.00 5.34
822 829 3.818787 CCTGCCCGATTGCTGCAC 61.819 66.667 0.00 0.00 0.00 4.57
823 830 4.349503 ACCTGCCCGATTGCTGCA 62.350 61.111 0.00 0.00 0.00 4.41
824 831 3.818787 CACCTGCCCGATTGCTGC 61.819 66.667 0.00 0.00 0.00 5.25
825 832 1.033746 ATTCACCTGCCCGATTGCTG 61.034 55.000 0.00 0.00 0.00 4.41
826 833 1.033746 CATTCACCTGCCCGATTGCT 61.034 55.000 0.00 0.00 0.00 3.91
827 834 1.315257 ACATTCACCTGCCCGATTGC 61.315 55.000 0.00 0.00 0.00 3.56
828 835 0.734889 GACATTCACCTGCCCGATTG 59.265 55.000 0.00 0.00 0.00 2.67
829 836 0.744414 CGACATTCACCTGCCCGATT 60.744 55.000 0.00 0.00 0.00 3.34
830 837 1.153369 CGACATTCACCTGCCCGAT 60.153 57.895 0.00 0.00 0.00 4.18
831 838 2.264480 CGACATTCACCTGCCCGA 59.736 61.111 0.00 0.00 0.00 5.14
832 839 2.047274 ACGACATTCACCTGCCCG 60.047 61.111 0.00 0.00 0.00 6.13
833 840 0.535335 TAGACGACATTCACCTGCCC 59.465 55.000 0.00 0.00 0.00 5.36
834 841 1.067142 TGTAGACGACATTCACCTGCC 60.067 52.381 0.00 0.00 31.20 4.85
835 842 2.094700 TCTGTAGACGACATTCACCTGC 60.095 50.000 0.00 0.00 37.45 4.85
836 843 3.850122 TCTGTAGACGACATTCACCTG 57.150 47.619 0.00 0.00 37.45 4.00
837 844 5.652891 ACTATTCTGTAGACGACATTCACCT 59.347 40.000 0.00 0.00 37.45 4.00
838 845 5.892568 ACTATTCTGTAGACGACATTCACC 58.107 41.667 0.00 0.00 37.45 4.02
839 846 6.472808 GGAACTATTCTGTAGACGACATTCAC 59.527 42.308 0.00 0.00 37.45 3.18
840 847 6.561614 GGAACTATTCTGTAGACGACATTCA 58.438 40.000 0.00 0.00 37.45 2.57
841 848 5.681982 CGGAACTATTCTGTAGACGACATTC 59.318 44.000 0.00 0.00 37.45 2.67
842 849 5.450137 CCGGAACTATTCTGTAGACGACATT 60.450 44.000 0.00 0.00 37.45 2.71
843 850 4.036498 CCGGAACTATTCTGTAGACGACAT 59.964 45.833 0.00 0.00 37.45 3.06
844 851 3.376234 CCGGAACTATTCTGTAGACGACA 59.624 47.826 0.00 0.00 34.15 4.35
845 852 3.624861 TCCGGAACTATTCTGTAGACGAC 59.375 47.826 0.00 0.00 34.15 4.34
846 853 3.877559 TCCGGAACTATTCTGTAGACGA 58.122 45.455 0.00 0.00 34.15 4.20
847 854 4.627611 TTCCGGAACTATTCTGTAGACG 57.372 45.455 14.35 0.00 34.15 4.18
848 855 6.628185 TCTTTTCCGGAACTATTCTGTAGAC 58.372 40.000 18.64 0.00 34.15 2.59
849 856 6.845758 TCTTTTCCGGAACTATTCTGTAGA 57.154 37.500 18.64 5.84 34.15 2.59
850 857 7.900782 TTTCTTTTCCGGAACTATTCTGTAG 57.099 36.000 18.64 3.62 34.15 2.74
851 858 7.935210 ACTTTTCTTTTCCGGAACTATTCTGTA 59.065 33.333 18.64 0.00 34.15 2.74
852 859 6.771267 ACTTTTCTTTTCCGGAACTATTCTGT 59.229 34.615 18.64 8.89 34.15 3.41
853 860 7.203255 ACTTTTCTTTTCCGGAACTATTCTG 57.797 36.000 18.64 8.24 35.78 3.02
854 861 7.935210 TGTACTTTTCTTTTCCGGAACTATTCT 59.065 33.333 18.64 0.00 0.00 2.40
855 862 8.013947 GTGTACTTTTCTTTTCCGGAACTATTC 58.986 37.037 18.64 1.10 0.00 1.75
856 863 7.307573 CGTGTACTTTTCTTTTCCGGAACTATT 60.308 37.037 18.64 0.00 0.00 1.73
857 864 6.146673 CGTGTACTTTTCTTTTCCGGAACTAT 59.853 38.462 18.64 0.00 0.00 2.12
858 865 5.463061 CGTGTACTTTTCTTTTCCGGAACTA 59.537 40.000 18.64 7.23 0.00 2.24
859 866 4.271776 CGTGTACTTTTCTTTTCCGGAACT 59.728 41.667 18.64 0.00 0.00 3.01
860 867 4.521010 CGTGTACTTTTCTTTTCCGGAAC 58.479 43.478 18.64 2.05 0.00 3.62
861 868 3.560896 CCGTGTACTTTTCTTTTCCGGAA 59.439 43.478 14.35 14.35 35.04 4.30
862 869 3.132925 CCGTGTACTTTTCTTTTCCGGA 58.867 45.455 0.00 0.00 35.04 5.14
863 870 2.224784 CCCGTGTACTTTTCTTTTCCGG 59.775 50.000 0.00 0.00 0.00 5.14
864 871 2.224784 CCCCGTGTACTTTTCTTTTCCG 59.775 50.000 0.00 0.00 0.00 4.30
865 872 2.030540 GCCCCGTGTACTTTTCTTTTCC 60.031 50.000 0.00 0.00 0.00 3.13
866 873 2.882761 AGCCCCGTGTACTTTTCTTTTC 59.117 45.455 0.00 0.00 0.00 2.29
867 874 2.940158 AGCCCCGTGTACTTTTCTTTT 58.060 42.857 0.00 0.00 0.00 2.27
868 875 2.651382 AGCCCCGTGTACTTTTCTTT 57.349 45.000 0.00 0.00 0.00 2.52
869 876 2.289882 GGTAGCCCCGTGTACTTTTCTT 60.290 50.000 0.00 0.00 0.00 2.52
870 877 1.277273 GGTAGCCCCGTGTACTTTTCT 59.723 52.381 0.00 0.00 0.00 2.52
871 878 1.676916 GGGTAGCCCCGTGTACTTTTC 60.677 57.143 0.00 0.00 42.41 2.29
872 879 0.325933 GGGTAGCCCCGTGTACTTTT 59.674 55.000 0.00 0.00 42.41 2.27
873 880 1.985614 GGGTAGCCCCGTGTACTTT 59.014 57.895 0.00 0.00 42.41 2.66
874 881 3.717750 GGGTAGCCCCGTGTACTT 58.282 61.111 0.00 0.00 42.41 2.24
883 890 1.965754 CTGAGCTCAGTGGGTAGCCC 61.966 65.000 31.71 0.62 39.64 5.19
884 891 1.519719 CTGAGCTCAGTGGGTAGCC 59.480 63.158 31.71 3.29 39.64 3.93
885 892 1.153469 GCTGAGCTCAGTGGGTAGC 60.153 63.158 37.25 22.70 45.45 3.58
886 893 2.589494 AGCTGAGCTCAGTGGGTAG 58.411 57.895 37.25 17.44 45.45 3.18
887 894 4.874521 AGCTGAGCTCAGTGGGTA 57.125 55.556 37.25 6.54 45.45 3.69
897 904 2.508887 CAGTGGAGCGAGCTGAGC 60.509 66.667 0.84 0.00 32.39 4.26
898 905 2.508887 GCAGTGGAGCGAGCTGAG 60.509 66.667 0.84 0.00 32.39 3.35
899 906 4.074526 GGCAGTGGAGCGAGCTGA 62.075 66.667 0.84 0.00 34.64 4.26
903 910 3.655810 GAGTGGGCAGTGGAGCGAG 62.656 68.421 0.00 0.00 34.64 5.03
904 911 3.695606 GAGTGGGCAGTGGAGCGA 61.696 66.667 0.00 0.00 34.64 4.93
905 912 4.767255 GGAGTGGGCAGTGGAGCG 62.767 72.222 0.00 0.00 34.64 5.03
906 913 4.416738 GGGAGTGGGCAGTGGAGC 62.417 72.222 0.00 0.00 0.00 4.70
907 914 3.721706 GGGGAGTGGGCAGTGGAG 61.722 72.222 0.00 0.00 0.00 3.86
908 915 4.270153 AGGGGAGTGGGCAGTGGA 62.270 66.667 0.00 0.00 0.00 4.02
909 916 3.721706 GAGGGGAGTGGGCAGTGG 61.722 72.222 0.00 0.00 0.00 4.00
910 917 4.087892 CGAGGGGAGTGGGCAGTG 62.088 72.222 0.00 0.00 0.00 3.66
928 935 0.665835 CAGAGTAGGTAGCTGGCGAG 59.334 60.000 4.27 0.00 0.00 5.03
929 936 1.384989 GCAGAGTAGGTAGCTGGCGA 61.385 60.000 4.27 0.00 0.00 5.54
935 942 1.989706 AGCCTAGCAGAGTAGGTAGC 58.010 55.000 0.00 0.00 41.69 3.58
951 958 0.747852 GAGCAGGACACTAGGTAGCC 59.252 60.000 0.00 0.00 0.00 3.93
952 959 1.407258 CAGAGCAGGACACTAGGTAGC 59.593 57.143 0.00 0.00 0.00 3.58
960 968 2.125753 CGGAGCAGAGCAGGACAC 60.126 66.667 0.00 0.00 0.00 3.67
1073 1081 4.648626 ACGACGTCCTCCGGGTGA 62.649 66.667 10.58 0.00 42.24 4.02
1087 1095 2.997315 CCTGAGGGTGGCTGACGA 60.997 66.667 0.00 0.00 0.00 4.20
1137 1145 2.352032 GGAGACGGAGGTGGAGGTG 61.352 68.421 0.00 0.00 0.00 4.00
1138 1146 2.037527 GGAGACGGAGGTGGAGGT 59.962 66.667 0.00 0.00 0.00 3.85
1358 1373 1.472480 CAATTAGGTGGGCCAAACGAG 59.528 52.381 8.40 0.00 37.19 4.18
1365 1380 1.037579 GGTGCTCAATTAGGTGGGCC 61.038 60.000 0.00 0.00 44.96 5.80
1373 1388 3.500448 TTCCACTGTGGTGCTCAATTA 57.500 42.857 25.15 0.75 41.75 1.40
1405 1420 8.828644 CATCAGAATCAAAGTAGAAAGAGATGG 58.171 37.037 0.00 0.00 0.00 3.51
1581 1647 4.197750 CAGCTCAATGTGAGGCTTTATCT 58.802 43.478 7.34 0.00 44.43 1.98
1582 1648 3.944015 ACAGCTCAATGTGAGGCTTTATC 59.056 43.478 7.34 0.00 44.43 1.75
1583 1649 3.960571 ACAGCTCAATGTGAGGCTTTAT 58.039 40.909 7.34 0.00 44.43 1.40
1584 1650 3.423539 ACAGCTCAATGTGAGGCTTTA 57.576 42.857 7.34 0.00 44.43 1.85
1585 1651 2.283145 ACAGCTCAATGTGAGGCTTT 57.717 45.000 7.34 0.00 44.43 3.51
1586 1652 2.568956 TCTACAGCTCAATGTGAGGCTT 59.431 45.455 7.34 0.00 44.43 4.35
1587 1653 2.182827 TCTACAGCTCAATGTGAGGCT 58.817 47.619 7.34 0.00 44.43 4.58
1588 1654 2.680312 TCTACAGCTCAATGTGAGGC 57.320 50.000 7.34 0.48 44.43 4.70
1589 1655 4.334759 CCAATTCTACAGCTCAATGTGAGG 59.665 45.833 7.34 0.00 44.43 3.86
1590 1656 5.181009 TCCAATTCTACAGCTCAATGTGAG 58.819 41.667 0.72 0.72 46.90 3.51
1591 1657 5.164620 TCCAATTCTACAGCTCAATGTGA 57.835 39.130 0.00 0.00 34.56 3.58
1592 1658 5.885230 TTCCAATTCTACAGCTCAATGTG 57.115 39.130 0.00 0.00 34.56 3.21
1593 1659 7.177216 TGAATTTCCAATTCTACAGCTCAATGT 59.823 33.333 9.93 0.00 37.19 2.71
1594 1660 7.541162 TGAATTTCCAATTCTACAGCTCAATG 58.459 34.615 9.93 0.00 0.00 2.82
1595 1661 7.707624 TGAATTTCCAATTCTACAGCTCAAT 57.292 32.000 9.93 0.00 0.00 2.57
1596 1662 7.177216 ACATGAATTTCCAATTCTACAGCTCAA 59.823 33.333 0.00 0.00 0.00 3.02
1597 1663 6.660521 ACATGAATTTCCAATTCTACAGCTCA 59.339 34.615 0.00 0.00 0.00 4.26
1598 1664 7.093322 ACATGAATTTCCAATTCTACAGCTC 57.907 36.000 0.00 0.00 0.00 4.09
1599 1665 7.611467 TGTACATGAATTTCCAATTCTACAGCT 59.389 33.333 0.00 0.00 0.00 4.24
1600 1666 7.761409 TGTACATGAATTTCCAATTCTACAGC 58.239 34.615 0.00 0.00 0.00 4.40
1942 2025 4.137543 GCCCATACCCTTCAAACTCATAG 58.862 47.826 0.00 0.00 0.00 2.23
1945 2028 1.992557 AGCCCATACCCTTCAAACTCA 59.007 47.619 0.00 0.00 0.00 3.41
1988 2071 4.941873 GGGTGTCGTTTCTTCATAGGAAAT 59.058 41.667 0.00 0.00 35.55 2.17
2000 2083 7.556733 TTATAAATATGTGGGGTGTCGTTTC 57.443 36.000 0.00 0.00 0.00 2.78
2004 2087 7.737972 TCAATTATAAATATGTGGGGTGTCG 57.262 36.000 0.00 0.00 0.00 4.35
2008 2094 7.015195 GCAGGTTCAATTATAAATATGTGGGGT 59.985 37.037 0.00 0.00 0.00 4.95
2148 2254 5.938125 AGATGCAGACGTGGTAAACTAAAAT 59.062 36.000 0.00 0.00 0.00 1.82
2234 2345 1.686355 AGACGGCTACCATCTCTCTG 58.314 55.000 0.00 0.00 0.00 3.35
2493 2608 7.388776 TGGATTTTCAGAACAGAGTGAGTATTG 59.611 37.037 0.00 0.00 0.00 1.90
2516 2639 5.208121 ACCAAGAACTTCTTCCATTTTGGA 58.792 37.500 9.48 0.00 46.61 3.53
2517 2640 5.535753 ACCAAGAACTTCTTCCATTTTGG 57.464 39.130 0.67 2.00 33.78 3.28
2525 2648 4.639135 AGCACAAACCAAGAACTTCTTC 57.361 40.909 0.67 0.00 33.78 2.87
2668 2801 9.719355 ATAATACATCAACACTCACAACAGTAA 57.281 29.630 0.00 0.00 0.00 2.24
2733 2866 7.964604 AAATCTAAGACGTTCTAGCTTTGTT 57.035 32.000 0.00 0.00 0.00 2.83
2785 2918 3.381272 TCTTGCCAGGAAACAAGAAGTTG 59.619 43.478 5.71 0.00 46.89 3.16
2815 2952 7.173218 GCCAGCATAAGACTGCAACTATATTAA 59.827 37.037 0.00 0.00 44.77 1.40
2817 2954 5.471456 GCCAGCATAAGACTGCAACTATATT 59.529 40.000 0.00 0.00 44.77 1.28
2822 2959 1.457346 GCCAGCATAAGACTGCAACT 58.543 50.000 0.00 0.00 44.77 3.16
2866 3007 8.068380 CAGAAGACAATACTTATGATGCATGTG 58.932 37.037 2.46 0.00 40.23 3.21
2871 3012 9.098355 TGTAACAGAAGACAATACTTATGATGC 57.902 33.333 9.46 3.23 40.23 3.91
2879 3020 9.046296 CAGAAAACTGTAACAGAAGACAATACT 57.954 33.333 0.00 0.00 35.18 2.12
2882 3023 6.543831 AGCAGAAAACTGTAACAGAAGACAAT 59.456 34.615 0.00 0.00 35.18 2.71
2888 3029 3.944650 TGCAGCAGAAAACTGTAACAGAA 59.055 39.130 0.00 0.00 37.47 3.02
2943 3215 7.833786 AGAATGCAATGATATGACAAAACACT 58.166 30.769 0.00 0.00 0.00 3.55
2982 3256 8.627403 CCTATGTCTGACTAATGAATGCAAAAT 58.373 33.333 9.51 0.00 0.00 1.82
3012 3287 2.579410 TTTGGGGCAAGGTAGAAGAC 57.421 50.000 0.00 0.00 0.00 3.01
3089 3376 1.915489 TGGATCCACCTGCAACATACT 59.085 47.619 11.44 0.00 39.86 2.12
3090 3377 2.418368 TGGATCCACCTGCAACATAC 57.582 50.000 11.44 0.00 39.86 2.39
3211 3499 1.747444 AAGGACCCTGTCAGGAACAT 58.253 50.000 21.23 8.40 37.67 2.71
3231 3519 1.625818 CACAGGGAAGGAGCTAACAGT 59.374 52.381 0.00 0.00 0.00 3.55
3324 3613 9.326489 ACATAGCCTATACTTTCAGATTATGGA 57.674 33.333 0.00 0.00 0.00 3.41
3325 3614 9.950496 AACATAGCCTATACTTTCAGATTATGG 57.050 33.333 0.00 0.00 0.00 2.74
3329 3618 8.928448 TCTGAACATAGCCTATACTTTCAGATT 58.072 33.333 19.18 0.00 0.00 2.40
3330 3619 8.484214 TCTGAACATAGCCTATACTTTCAGAT 57.516 34.615 19.18 0.00 0.00 2.90
3334 3637 6.986817 TGCTTCTGAACATAGCCTATACTTTC 59.013 38.462 0.00 0.00 34.03 2.62
3392 3724 9.241919 ACAGTAACAAAATCATGAACATATGGA 57.758 29.630 7.80 0.00 0.00 3.41
3698 4034 4.613925 TGCTATGAATAAGCAGGAGAGG 57.386 45.455 0.00 0.00 44.78 3.69
3766 4103 2.949177 AACATGTGCAGGTCAGGTTA 57.051 45.000 0.00 0.00 37.89 2.85
3776 4113 2.296752 CCCTGATGACAAAACATGTGCA 59.703 45.455 0.00 0.00 44.12 4.57
3910 4247 4.760715 AGATGTTATGATGGCAGAGCATTC 59.239 41.667 5.75 0.00 37.31 2.67
4219 4619 1.743394 TCTACGATCTCAGCGCTTTCA 59.257 47.619 7.50 0.00 0.00 2.69
4468 4880 1.946768 TCACAAAACTTGAAGGGCGAG 59.053 47.619 0.00 0.00 0.00 5.03
4511 4936 0.999406 CGACATGTTTCCCGTGCTAG 59.001 55.000 0.00 0.00 33.01 3.42
4555 4980 3.039134 CAACCAAACAGCCCCGAC 58.961 61.111 0.00 0.00 0.00 4.79
4556 4981 2.909965 GCAACCAAACAGCCCCGA 60.910 61.111 0.00 0.00 0.00 5.14
4557 4982 2.912025 AGCAACCAAACAGCCCCG 60.912 61.111 0.00 0.00 0.00 5.73
4558 4983 2.736531 CAGCAACCAAACAGCCCC 59.263 61.111 0.00 0.00 0.00 5.80
4559 4984 2.736531 CCAGCAACCAAACAGCCC 59.263 61.111 0.00 0.00 0.00 5.19
4560 4985 2.029518 GCCAGCAACCAAACAGCC 59.970 61.111 0.00 0.00 0.00 4.85
4561 4986 2.355009 CGCCAGCAACCAAACAGC 60.355 61.111 0.00 0.00 0.00 4.40
4562 4987 2.336088 CCGCCAGCAACCAAACAG 59.664 61.111 0.00 0.00 0.00 3.16
4563 4988 3.222855 CCCGCCAGCAACCAAACA 61.223 61.111 0.00 0.00 0.00 2.83
4564 4989 3.223589 ACCCGCCAGCAACCAAAC 61.224 61.111 0.00 0.00 0.00 2.93
4565 4990 3.222855 CACCCGCCAGCAACCAAA 61.223 61.111 0.00 0.00 0.00 3.28
4568 4993 4.338710 TACCACCCGCCAGCAACC 62.339 66.667 0.00 0.00 0.00 3.77
4569 4994 2.746277 CTACCACCCGCCAGCAAC 60.746 66.667 0.00 0.00 0.00 4.17
4570 4995 4.028490 CCTACCACCCGCCAGCAA 62.028 66.667 0.00 0.00 0.00 3.91
4572 4997 4.778143 CACCTACCACCCGCCAGC 62.778 72.222 0.00 0.00 0.00 4.85
4605 5030 2.684927 GCTCCCACAATGATAAGCCACT 60.685 50.000 0.00 0.00 0.00 4.00
4629 5054 3.217242 GGCATCGGCGATGTCTTAT 57.783 52.632 40.04 11.36 40.97 1.73
4643 5068 2.025321 ACTTTATCCCGTTTCCAGGCAT 60.025 45.455 0.00 0.00 0.00 4.40
4662 5087 1.743772 GCCGGTATGCATGTCTTCACT 60.744 52.381 10.16 0.00 0.00 3.41
4677 5102 1.520666 CTGGGTAAGATTCGCCGGT 59.479 57.895 1.90 0.00 0.00 5.28
4716 5141 2.508300 GGAGCAGGATTAGGGGTGTTAA 59.492 50.000 0.00 0.00 0.00 2.01
4806 5231 0.620556 TAGCCTTGCCCTTCTTCCTG 59.379 55.000 0.00 0.00 0.00 3.86
4913 5348 2.436542 CGGATTACCATTGTACCCCTGA 59.563 50.000 0.00 0.00 35.59 3.86
4943 5378 1.982395 CACTGACGGCTAGGACCCA 60.982 63.158 0.00 0.00 0.00 4.51
5094 5529 1.943968 GCCATGCTTACCTCGACACAA 60.944 52.381 0.00 0.00 0.00 3.33
5142 5577 1.877165 GACGCGGTAAGGCTACAGC 60.877 63.158 12.47 0.00 43.40 4.40
5156 5591 3.001736 GCATCATTAAGGAGACAAGACGC 59.998 47.826 0.00 0.00 0.00 5.19
5222 5657 4.704833 CAGTCGGCCTGGGGTGTG 62.705 72.222 0.00 0.00 37.54 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.