Multiple sequence alignment - TraesCS7D01G050900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G050900 chr7D 100.000 4658 0 0 2652 7309 26537747 26533090 0.000000e+00 8602.0
1 TraesCS7D01G050900 chr7D 100.000 2412 0 0 1 2412 26540398 26537987 0.000000e+00 4455.0
2 TraesCS7D01G050900 chr7D 79.006 724 103 36 6587 7299 490439315 490440000 4.020000e-122 449.0
3 TraesCS7D01G050900 chr7D 91.597 119 10 0 854 972 591010374 591010492 1.630000e-36 165.0
4 TraesCS7D01G050900 chr7A 92.415 3942 229 39 2652 6544 26882776 26878856 0.000000e+00 5559.0
5 TraesCS7D01G050900 chr7A 92.067 1021 64 8 854 1858 26884590 26883571 0.000000e+00 1421.0
6 TraesCS7D01G050900 chr7A 93.677 854 53 1 1 853 26885472 26884619 0.000000e+00 1277.0
7 TraesCS7D01G050900 chr7A 84.290 331 36 2 1940 2269 26883554 26883239 7.120000e-80 309.0
8 TraesCS7D01G050900 chr7A 82.653 196 28 5 6545 6737 609574459 609574267 1.260000e-37 169.0
9 TraesCS7D01G050900 chr7A 86.555 119 16 0 854 972 722882011 722881893 1.650000e-26 132.0
10 TraesCS7D01G050900 chr7A 85.124 121 16 1 854 974 689280801 689280683 9.960000e-24 122.0
11 TraesCS7D01G050900 chr4A 93.817 938 41 10 4113 5036 710665519 710664585 0.000000e+00 1395.0
12 TraesCS7D01G050900 chr4A 89.648 1024 51 23 3049 4023 710666743 710665726 0.000000e+00 1253.0
13 TraesCS7D01G050900 chr4A 91.245 811 37 13 5030 5808 710664552 710663744 0.000000e+00 1074.0
14 TraesCS7D01G050900 chr4A 93.501 677 36 6 972 1640 710668456 710667780 0.000000e+00 1000.0
15 TraesCS7D01G050900 chr4A 90.654 428 35 3 5807 6233 710663636 710663213 1.380000e-156 564.0
16 TraesCS7D01G050900 chr4A 84.283 509 40 16 236 737 710669064 710668589 1.860000e-125 460.0
17 TraesCS7D01G050900 chr4A 88.934 244 27 0 1 244 89431037 89430794 1.190000e-77 302.0
18 TraesCS7D01G050900 chr4A 89.030 237 26 0 1 237 89430805 89431041 1.990000e-75 294.0
19 TraesCS7D01G050900 chr4A 93.000 100 7 0 744 843 710668548 710668449 5.910000e-31 147.0
20 TraesCS7D01G050900 chr4A 86.441 118 15 1 854 970 737468622 737468505 2.140000e-25 128.0
21 TraesCS7D01G050900 chr4A 81.481 81 15 0 2148 2228 632706665 632706585 4.730000e-07 67.6
22 TraesCS7D01G050900 chr3B 82.963 1215 142 34 4467 5636 984900 986094 0.000000e+00 1037.0
23 TraesCS7D01G050900 chr3B 82.018 456 64 14 5747 6193 986233 986679 8.960000e-99 372.0
24 TraesCS7D01G050900 chr3B 77.362 561 89 25 6544 7080 561890015 561890561 1.540000e-76 298.0
25 TraesCS7D01G050900 chr3B 88.646 229 21 4 4213 4440 984679 984903 2.600000e-69 274.0
26 TraesCS7D01G050900 chr3B 100.000 31 0 0 4055 4085 984477 984507 2.850000e-04 58.4
27 TraesCS7D01G050900 chr3A 83.493 1151 138 27 4526 5636 1307281 1308419 0.000000e+00 1026.0
28 TraesCS7D01G050900 chr3A 86.364 264 31 4 5934 6193 1308745 1309007 4.320000e-72 283.0
29 TraesCS7D01G050900 chr3A 88.412 233 22 4 4213 4444 1307031 1307259 7.220000e-70 276.0
30 TraesCS7D01G050900 chr3A 97.297 37 0 1 4050 4085 1306849 1306885 2.200000e-05 62.1
31 TraesCS7D01G050900 chrUn 83.134 1168 125 30 4526 5636 43326338 43325186 0.000000e+00 1000.0
32 TraesCS7D01G050900 chrUn 80.416 577 79 22 3473 4022 43327498 43326929 6.830000e-110 409.0
33 TraesCS7D01G050900 chrUn 82.051 468 53 18 5747 6193 43325068 43324611 3.220000e-98 370.0
34 TraesCS7D01G050900 chrUn 86.076 237 27 3 4213 4447 43326589 43326357 4.380000e-62 250.0
35 TraesCS7D01G050900 chrUn 91.489 47 0 1 4043 4085 43326800 43326754 2.200000e-05 62.1
36 TraesCS7D01G050900 chr4D 79.048 735 114 22 6544 7255 109325424 109324707 1.110000e-127 468.0
37 TraesCS7D01G050900 chr5D 78.635 674 115 25 6537 7194 493161369 493162029 3.150000e-113 420.0
38 TraesCS7D01G050900 chr5D 76.653 711 116 33 6537 7238 438102050 438101381 1.510000e-91 348.0
39 TraesCS7D01G050900 chr5D 88.333 120 14 0 854 973 538106042 538105923 2.130000e-30 145.0
40 TraesCS7D01G050900 chr3D 77.946 662 120 22 6544 7194 612876133 612875487 2.470000e-104 390.0
41 TraesCS7D01G050900 chr3D 75.561 401 57 21 6546 6944 21217899 21218260 7.590000e-35 159.0
42 TraesCS7D01G050900 chr2D 82.436 427 61 11 6544 6963 27552009 27551590 1.940000e-95 361.0
43 TraesCS7D01G050900 chr2D 88.703 239 27 0 1 239 325325405 325325643 7.170000e-75 292.0
44 TraesCS7D01G050900 chr2D 87.395 238 30 0 1 238 325325637 325325400 2.600000e-69 274.0
45 TraesCS7D01G050900 chr2D 79.275 193 37 3 392 582 82222933 82222742 1.650000e-26 132.0
46 TraesCS7D01G050900 chr5A 76.351 740 123 33 6536 7259 616167459 616168162 4.200000e-92 350.0
47 TraesCS7D01G050900 chr5A 88.034 117 13 1 854 970 599976950 599977065 3.560000e-28 137.0
48 TraesCS7D01G050900 chr5B 76.867 683 115 32 6583 7253 608366981 608367632 5.430000e-91 346.0
49 TraesCS7D01G050900 chr6D 78.759 532 77 23 6599 7105 16147069 16146549 2.540000e-84 324.0
50 TraesCS7D01G050900 chr1A 89.316 234 24 1 1 233 22387697 22387464 7.170000e-75 292.0
51 TraesCS7D01G050900 chr1A 87.448 239 29 1 1 238 22387464 22387702 2.600000e-69 274.0
52 TraesCS7D01G050900 chr2B 88.235 238 28 0 1 238 143270314 143270077 1.200000e-72 285.0
53 TraesCS7D01G050900 chr2B 89.744 117 12 0 854 970 794544267 794544383 4.570000e-32 150.0
54 TraesCS7D01G050900 chr2B 81.967 122 20 2 463 582 134250201 134250080 1.300000e-17 102.0
55 TraesCS7D01G050900 chr1D 89.381 226 24 0 1 226 399066432 399066657 1.200000e-72 285.0
56 TraesCS7D01G050900 chr1D 88.983 118 12 1 854 971 231021155 231021039 2.130000e-30 145.0
57 TraesCS7D01G050900 chr6A 83.630 281 42 3 3694 3972 559729674 559729952 2.020000e-65 261.0
58 TraesCS7D01G050900 chr6A 85.714 77 11 0 4213 4289 559730337 559730413 1.690000e-11 82.4
59 TraesCS7D01G050900 chr6A 100.000 43 0 0 4043 4085 559730130 559730172 6.080000e-11 80.5
60 TraesCS7D01G050900 chr1B 100.000 43 0 0 4043 4085 526246282 526246240 6.080000e-11 80.5
61 TraesCS7D01G050900 chr2A 96.970 33 0 1 2202 2233 754436052 754436020 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G050900 chr7D 26533090 26540398 7308 True 6528.500000 8602 100.000000 1 7309 2 chr7D.!!$R1 7308
1 TraesCS7D01G050900 chr7D 490439315 490440000 685 False 449.000000 449 79.006000 6587 7299 1 chr7D.!!$F1 712
2 TraesCS7D01G050900 chr7A 26878856 26885472 6616 True 2141.500000 5559 90.612250 1 6544 4 chr7A.!!$R4 6543
3 TraesCS7D01G050900 chr4A 710663213 710669064 5851 True 841.857143 1395 90.878286 236 6233 7 chr4A.!!$R4 5997
4 TraesCS7D01G050900 chr3B 984477 986679 2202 False 435.350000 1037 88.406750 4055 6193 4 chr3B.!!$F2 2138
5 TraesCS7D01G050900 chr3B 561890015 561890561 546 False 298.000000 298 77.362000 6544 7080 1 chr3B.!!$F1 536
6 TraesCS7D01G050900 chr3A 1306849 1309007 2158 False 411.775000 1026 88.891500 4050 6193 4 chr3A.!!$F1 2143
7 TraesCS7D01G050900 chrUn 43324611 43327498 2887 True 418.220000 1000 84.633200 3473 6193 5 chrUn.!!$R1 2720
8 TraesCS7D01G050900 chr4D 109324707 109325424 717 True 468.000000 468 79.048000 6544 7255 1 chr4D.!!$R1 711
9 TraesCS7D01G050900 chr5D 493161369 493162029 660 False 420.000000 420 78.635000 6537 7194 1 chr5D.!!$F1 657
10 TraesCS7D01G050900 chr5D 438101381 438102050 669 True 348.000000 348 76.653000 6537 7238 1 chr5D.!!$R1 701
11 TraesCS7D01G050900 chr3D 612875487 612876133 646 True 390.000000 390 77.946000 6544 7194 1 chr3D.!!$R1 650
12 TraesCS7D01G050900 chr5A 616167459 616168162 703 False 350.000000 350 76.351000 6536 7259 1 chr5A.!!$F2 723
13 TraesCS7D01G050900 chr5B 608366981 608367632 651 False 346.000000 346 76.867000 6583 7253 1 chr5B.!!$F1 670
14 TraesCS7D01G050900 chr6D 16146549 16147069 520 True 324.000000 324 78.759000 6599 7105 1 chr6D.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 325 0.983378 ACAGGCGGGAATCTTAGGCT 60.983 55.0 0.00 0.0 40.22 4.58 F
1462 1537 0.182537 CAAAGGTGGTGTGGTGAGGA 59.817 55.0 0.00 0.0 0.00 3.71 F
2015 2132 0.030101 GCCGTGCTGCAACTTTACAA 59.970 50.0 2.77 0.0 0.00 2.41 F
2731 3155 0.035458 AGCACACTGAGCCTACCAAC 59.965 55.0 0.00 0.0 0.00 3.77 F
4319 5135 0.534203 GTGGTCCTTTCGTGCTTCCA 60.534 55.0 0.00 0.0 0.00 3.53 F
5408 6360 0.320374 CACCGTCCTAGCTCCACAAA 59.680 55.0 0.00 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 1973 0.181114 CTGGCCAGCCTTGTATGCTA 59.819 55.000 22.33 0.00 36.81 3.49 R
2364 2692 0.465460 TTGTTGGCTGCGAAAGAGGT 60.465 50.000 0.00 0.00 0.00 3.85 R
3266 3691 0.608640 CTACGGAACCAGTTGAGCCT 59.391 55.000 0.00 0.00 0.00 4.58 R
4701 5533 1.304381 TCAATTGGCCAGTCCCTGC 60.304 57.895 5.11 0.00 0.00 4.85 R
6185 7316 1.457455 CCCCCAAATGCGGCCTTAT 60.457 57.895 0.00 0.00 0.00 1.73 R
6615 7758 0.652592 GTATGTCGGTGATGCAGCAC 59.347 55.000 26.53 26.53 38.05 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.696884 TCCATTCCACAGTGTAGTGCA 59.303 47.619 0.00 0.00 38.18 4.57
49 50 2.860735 CGCTTCCCGAGATCTAAGTTTG 59.139 50.000 0.00 0.00 40.02 2.93
74 75 7.893302 TGACCATAAATTTAACCAATCAGACCT 59.107 33.333 1.21 0.00 0.00 3.85
79 80 9.975218 ATAAATTTAACCAATCAGACCTACTGT 57.025 29.630 1.21 0.00 45.86 3.55
81 82 3.703001 AACCAATCAGACCTACTGTGG 57.297 47.619 0.00 0.00 45.86 4.17
169 170 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
176 177 3.122948 CAGTCGGTCTCGTTGGTTAAATG 59.877 47.826 0.00 0.00 37.69 2.32
180 181 3.059834 CGGTCTCGTTGGTTAAATGTACG 59.940 47.826 0.00 0.00 0.00 3.67
191 192 7.424227 TGGTTAAATGTACGGTCAAACTTAG 57.576 36.000 0.00 0.00 0.00 2.18
196 197 9.715121 TTAAATGTACGGTCAAACTTAGATCTT 57.285 29.630 0.00 0.00 0.00 2.40
230 231 2.095853 CGCACTACATTGTGGAATGGAC 59.904 50.000 7.20 0.00 43.00 4.02
231 232 2.095853 GCACTACATTGTGGAATGGACG 59.904 50.000 7.20 0.00 43.00 4.79
284 286 2.812358 ACATGTTTTTCCGGCCTTTC 57.188 45.000 0.00 0.00 0.00 2.62
323 325 0.983378 ACAGGCGGGAATCTTAGGCT 60.983 55.000 0.00 0.00 40.22 4.58
441 447 2.571212 TGTTTCCACAATCGTCAAGCT 58.429 42.857 0.00 0.00 0.00 3.74
479 485 2.069273 ACGTTCGAGCATTTCTTGAGG 58.931 47.619 0.00 0.00 36.60 3.86
480 486 2.069273 CGTTCGAGCATTTCTTGAGGT 58.931 47.619 0.00 0.00 36.60 3.85
500 506 7.275183 TGAGGTGTACTGGATGATTAAAGATG 58.725 38.462 0.00 0.00 0.00 2.90
647 654 5.903764 TTGCTGCATTGTTTGTTGTATTC 57.096 34.783 1.84 0.00 0.00 1.75
718 725 9.871238 TGATCTAAATTGAGTAGTGGAGTAAAC 57.129 33.333 0.00 0.00 0.00 2.01
742 784 9.594478 AACAAAAGAAAACATAACTTTACCCAG 57.406 29.630 0.00 0.00 34.18 4.45
772 814 4.980573 ACAGCCTGTACAAAGTTATGGAA 58.019 39.130 0.00 0.00 0.00 3.53
776 818 4.000988 CCTGTACAAAGTTATGGAACGCT 58.999 43.478 0.00 0.00 40.76 5.07
883 953 9.798994 AAGTTAATAGTAAATCTGACCACTACG 57.201 33.333 0.00 0.00 0.00 3.51
896 966 6.811665 TCTGACCACTACGTAATCAAATCAAG 59.188 38.462 0.00 0.00 0.00 3.02
902 972 3.950397 ACGTAATCAAATCAAGGGCTCA 58.050 40.909 0.00 0.00 0.00 4.26
922 992 8.589338 GGGCTCAGATCTATTATGAACTCTTAA 58.411 37.037 0.00 0.00 0.00 1.85
940 1010 7.168905 ACTCTTAACTCTTATGTGAAAAGGGG 58.831 38.462 0.00 0.00 0.00 4.79
953 1023 2.272074 AAAGGGGAGGTAAGAGGGAG 57.728 55.000 0.00 0.00 0.00 4.30
1033 1107 3.891422 ATCTCCACTCTCAGAGCAAAG 57.109 47.619 0.00 0.00 32.04 2.77
1144 1219 1.690219 CCATTCTCGAGTCCCCCAGG 61.690 65.000 13.13 2.69 0.00 4.45
1311 1386 4.223477 CCCATTTTGGTTGATTCCATCTGT 59.777 41.667 0.00 0.00 37.33 3.41
1346 1421 3.118408 TCCATGTGGTAGAGTTGTATGGC 60.118 47.826 0.00 0.00 34.92 4.40
1448 1523 7.759433 ACGATTTTAAATTCCACTATGCAAAGG 59.241 33.333 0.00 0.00 0.00 3.11
1462 1537 0.182537 CAAAGGTGGTGTGGTGAGGA 59.817 55.000 0.00 0.00 0.00 3.71
1509 1584 5.624159 ACAAAAATGTCATCTCCTGTCAGA 58.376 37.500 0.00 0.00 0.00 3.27
1589 1665 5.417894 AGTTAATATGGTCTGTCAGTGTCGA 59.582 40.000 0.00 0.00 0.00 4.20
1644 1752 9.692749 CACTAAAACAAAGATAGTCTGTCAGTA 57.307 33.333 0.00 0.00 0.00 2.74
1671 1779 2.690173 TTTATTTGTGCGGGTTGTCG 57.310 45.000 0.00 0.00 0.00 4.35
1687 1799 3.889196 TGTCGGTGTAAAGTTGCATTC 57.111 42.857 0.00 0.00 0.00 2.67
1697 1809 8.752254 GGTGTAAAGTTGCATTCTTTTACTTTC 58.248 33.333 18.02 9.84 39.17 2.62
1726 1842 5.162075 GCCTAAGAGCATGGTAGTATAACG 58.838 45.833 0.00 0.00 0.00 3.18
1734 1850 5.010415 AGCATGGTAGTATAACGAGTAACCC 59.990 44.000 0.00 0.00 0.00 4.11
1748 1864 6.442112 ACGAGTAACCCGCTATATAAAGTTC 58.558 40.000 0.00 0.00 0.00 3.01
1750 1866 6.106648 AGTAACCCGCTATATAAAGTTCCC 57.893 41.667 0.00 0.00 0.00 3.97
1751 1867 4.362470 AACCCGCTATATAAAGTTCCCC 57.638 45.455 0.00 0.00 0.00 4.81
1752 1868 3.595021 ACCCGCTATATAAAGTTCCCCT 58.405 45.455 0.00 0.00 0.00 4.79
1753 1869 3.978672 ACCCGCTATATAAAGTTCCCCTT 59.021 43.478 0.00 0.00 33.79 3.95
1754 1870 4.041321 ACCCGCTATATAAAGTTCCCCTTC 59.959 45.833 0.00 0.00 31.27 3.46
1755 1871 4.041198 CCCGCTATATAAAGTTCCCCTTCA 59.959 45.833 0.00 0.00 31.27 3.02
1757 1873 6.238648 CCGCTATATAAAGTTCCCCTTCAAT 58.761 40.000 0.00 0.00 31.27 2.57
1774 1890 7.947890 CCCCTTCAATTATAGCCAACCTAATAA 59.052 37.037 0.00 0.00 0.00 1.40
1780 1896 9.013229 CAATTATAGCCAACCTAATAATCAGCA 57.987 33.333 0.00 0.00 0.00 4.41
1783 1899 3.117738 AGCCAACCTAATAATCAGCAGCT 60.118 43.478 0.00 0.00 0.00 4.24
1856 1973 4.893524 TGTAGCTACAGTACCTATGTGCAT 59.106 41.667 22.67 0.00 31.43 3.96
1857 1974 6.066032 TGTAGCTACAGTACCTATGTGCATA 58.934 40.000 22.67 0.00 31.43 3.14
1858 1975 5.713792 AGCTACAGTACCTATGTGCATAG 57.286 43.478 11.22 11.22 40.28 2.23
1859 1976 4.021894 AGCTACAGTACCTATGTGCATAGC 60.022 45.833 12.41 11.57 40.81 2.97
1860 1977 4.262036 GCTACAGTACCTATGTGCATAGCA 60.262 45.833 12.41 0.00 40.52 3.49
1871 1988 1.605710 GTGCATAGCATACAAGGCTGG 59.394 52.381 0.00 0.00 41.91 4.85
1874 1991 0.846015 ATAGCATACAAGGCTGGCCA 59.154 50.000 14.39 4.71 42.62 5.36
1888 2005 2.443390 GCCAGGGCCCTACGTAGA 60.443 66.667 28.13 0.00 34.56 2.59
1889 2006 1.837499 GCCAGGGCCCTACGTAGAT 60.837 63.158 28.13 0.00 34.56 1.98
1890 2007 2.050269 CCAGGGCCCTACGTAGATG 58.950 63.158 28.13 10.60 0.00 2.90
1891 2008 1.367840 CAGGGCCCTACGTAGATGC 59.632 63.158 28.13 22.71 0.00 3.91
1892 2009 1.115930 CAGGGCCCTACGTAGATGCT 61.116 60.000 28.13 8.30 0.00 3.79
1893 2010 1.115930 AGGGCCCTACGTAGATGCTG 61.116 60.000 27.42 6.49 0.00 4.41
1894 2011 1.367840 GGCCCTACGTAGATGCTGG 59.632 63.158 24.15 16.12 0.00 4.85
1895 2012 1.400530 GGCCCTACGTAGATGCTGGT 61.401 60.000 24.15 0.00 0.00 4.00
1896 2013 1.325355 GCCCTACGTAGATGCTGGTA 58.675 55.000 24.15 0.00 0.00 3.25
1897 2014 1.000496 GCCCTACGTAGATGCTGGTAC 60.000 57.143 24.15 1.03 0.00 3.34
1898 2015 2.304092 CCCTACGTAGATGCTGGTACA 58.696 52.381 24.15 0.00 0.00 2.90
1917 2034 8.201554 TGGTACAGTACTACTAATAGTCAACG 57.798 38.462 10.62 0.00 40.98 4.10
1918 2035 7.824289 TGGTACAGTACTACTAATAGTCAACGT 59.176 37.037 10.62 0.00 40.98 3.99
1919 2036 8.119226 GGTACAGTACTACTAATAGTCAACGTG 58.881 40.741 10.62 0.00 40.98 4.49
1920 2037 7.678947 ACAGTACTACTAATAGTCAACGTGT 57.321 36.000 0.00 0.00 40.98 4.49
1921 2038 8.777865 ACAGTACTACTAATAGTCAACGTGTA 57.222 34.615 0.00 0.00 40.98 2.90
1922 2039 9.388506 ACAGTACTACTAATAGTCAACGTGTAT 57.611 33.333 0.00 0.00 40.98 2.29
1929 2046 8.674263 ACTAATAGTCAACGTGTATAGTAGCT 57.326 34.615 0.00 0.00 0.00 3.32
1930 2047 9.770097 ACTAATAGTCAACGTGTATAGTAGCTA 57.230 33.333 0.00 0.00 0.00 3.32
1932 2049 8.674263 AATAGTCAACGTGTATAGTAGCTAGT 57.326 34.615 6.29 6.29 0.00 2.57
1933 2050 6.998968 AGTCAACGTGTATAGTAGCTAGTT 57.001 37.500 6.36 0.00 0.00 2.24
1934 2051 9.770097 ATAGTCAACGTGTATAGTAGCTAGTTA 57.230 33.333 6.36 0.00 0.00 2.24
1935 2052 7.914465 AGTCAACGTGTATAGTAGCTAGTTAC 58.086 38.462 6.36 8.59 0.00 2.50
1936 2053 7.768120 AGTCAACGTGTATAGTAGCTAGTTACT 59.232 37.037 21.12 21.12 37.61 2.24
1937 2054 8.394121 GTCAACGTGTATAGTAGCTAGTTACTT 58.606 37.037 22.31 13.34 35.57 2.24
1938 2055 9.599866 TCAACGTGTATAGTAGCTAGTTACTTA 57.400 33.333 22.31 12.51 35.57 2.24
1981 2098 2.319844 TGATCCACCATACGCTCTCAT 58.680 47.619 0.00 0.00 0.00 2.90
1987 2104 7.559897 TGATCCACCATACGCTCTCATAATATA 59.440 37.037 0.00 0.00 0.00 0.86
1997 2114 5.982516 CGCTCTCATAATATATCTTGGAGGC 59.017 44.000 0.00 0.00 0.00 4.70
2015 2132 0.030101 GCCGTGCTGCAACTTTACAA 59.970 50.000 2.77 0.00 0.00 2.41
2018 2135 1.753956 GTGCTGCAACTTTACAACCG 58.246 50.000 2.77 0.00 0.00 4.44
2020 2137 0.948678 GCTGCAACTTTACAACCGGA 59.051 50.000 9.46 0.00 0.00 5.14
2023 2140 3.821841 CTGCAACTTTACAACCGGATTC 58.178 45.455 9.46 0.00 0.00 2.52
2024 2141 2.554893 TGCAACTTTACAACCGGATTCC 59.445 45.455 9.46 0.00 0.00 3.01
2029 2146 4.918588 ACTTTACAACCGGATTCCATTCT 58.081 39.130 9.46 0.00 0.00 2.40
2067 2187 2.438434 GCCCGGTGCATGTAGCTT 60.438 61.111 11.25 0.00 45.94 3.74
2090 2210 2.558554 CTTACGCAGGGTCCGACCAG 62.559 65.000 19.43 11.79 41.02 4.00
2094 2214 1.966451 GCAGGGTCCGACCAGTTTG 60.966 63.158 19.43 11.88 41.02 2.93
2224 2344 7.496529 TTGCATCACCTTATTATACTTGCTC 57.503 36.000 0.00 0.00 0.00 4.26
2228 2348 9.442047 GCATCACCTTATTATACTTGCTCTAAT 57.558 33.333 0.00 0.00 0.00 1.73
2257 2378 2.218603 GAGGACGTCTTTCAAAAGGCA 58.781 47.619 16.46 0.00 40.57 4.75
2260 2381 1.266989 GACGTCTTTCAAAAGGCAGGG 59.733 52.381 8.70 0.00 40.57 4.45
2270 2598 8.467610 CTTTCAAAAGGCAGGGTTTCCCTATG 62.468 46.154 7.05 0.00 41.22 2.23
2289 2617 6.183347 CCTATGAAAAGAACTTGGGATGACT 58.817 40.000 0.00 0.00 0.00 3.41
2292 2620 5.445069 TGAAAAGAACTTGGGATGACTTCA 58.555 37.500 0.00 0.00 0.00 3.02
2298 2626 4.664688 ACTTGGGATGACTTCATTTCCT 57.335 40.909 11.44 0.00 36.57 3.36
2299 2627 4.338879 ACTTGGGATGACTTCATTTCCTG 58.661 43.478 11.44 8.22 36.57 3.86
2300 2628 3.370840 TGGGATGACTTCATTTCCTGG 57.629 47.619 11.44 0.00 36.57 4.45
2301 2629 2.918934 TGGGATGACTTCATTTCCTGGA 59.081 45.455 0.00 0.00 36.57 3.86
2302 2630 3.282885 GGGATGACTTCATTTCCTGGAC 58.717 50.000 0.00 0.00 36.57 4.02
2303 2631 3.308402 GGGATGACTTCATTTCCTGGACA 60.308 47.826 0.00 0.00 36.57 4.02
2304 2632 4.335416 GGATGACTTCATTTCCTGGACAA 58.665 43.478 0.00 0.00 36.57 3.18
2305 2633 4.766891 GGATGACTTCATTTCCTGGACAAA 59.233 41.667 0.00 0.00 36.57 2.83
2306 2634 5.243730 GGATGACTTCATTTCCTGGACAAAA 59.756 40.000 0.00 0.00 36.57 2.44
2307 2635 5.772825 TGACTTCATTTCCTGGACAAAAG 57.227 39.130 0.00 1.52 0.00 2.27
2308 2636 4.037923 TGACTTCATTTCCTGGACAAAAGC 59.962 41.667 0.00 0.00 0.00 3.51
2309 2637 3.321968 ACTTCATTTCCTGGACAAAAGCC 59.678 43.478 0.00 0.00 0.00 4.35
2310 2638 2.956132 TCATTTCCTGGACAAAAGCCA 58.044 42.857 0.00 0.00 0.00 4.75
2311 2639 3.509442 TCATTTCCTGGACAAAAGCCAT 58.491 40.909 0.00 0.00 34.33 4.40
2326 2654 7.867752 ACAAAAGCCATGAAATTTCTGAAATG 58.132 30.769 18.64 13.03 0.00 2.32
2372 2700 4.246458 CAGTTGGCAGTACTACCTCTTTC 58.754 47.826 13.44 0.33 0.00 2.62
2377 2705 2.531206 CAGTACTACCTCTTTCGCAGC 58.469 52.381 0.00 0.00 0.00 5.25
2395 2723 5.048083 TCGCAGCCAACAATCTAGAATTTTT 60.048 36.000 0.00 0.00 0.00 1.94
2696 3120 0.872388 GACCTAGCCAAACAACACCG 59.128 55.000 0.00 0.00 0.00 4.94
2702 3126 1.826054 CCAAACAACACCGCTGGGA 60.826 57.895 0.00 0.00 36.97 4.37
2730 3154 0.321671 GAGCACACTGAGCCTACCAA 59.678 55.000 0.00 0.00 0.00 3.67
2731 3155 0.035458 AGCACACTGAGCCTACCAAC 59.965 55.000 0.00 0.00 0.00 3.77
2748 3172 7.483307 CCTACCAACAATATCATTTGTTCCTG 58.517 38.462 0.00 0.00 45.54 3.86
2761 3185 7.944061 TCATTTGTTCCTGCCAAGAATATATG 58.056 34.615 0.00 0.00 30.54 1.78
2852 3276 1.271054 ACTGCTCTGCTTACTGTTGGG 60.271 52.381 0.00 0.00 0.00 4.12
2920 3344 4.217118 AGTTCACATGAATGAGGAAACAGC 59.783 41.667 0.00 0.00 36.33 4.40
3160 3585 4.582973 AAAGAGCAGCCTTCCTTAGAAT 57.417 40.909 0.00 0.00 0.00 2.40
3190 3615 1.076485 CTATGCAGCAGGGCCCTTT 60.076 57.895 26.10 11.34 0.00 3.11
3226 3651 1.290324 GAGCTGTCGCAGAACCTGA 59.710 57.895 10.46 0.00 39.69 3.86
3266 3691 3.836146 CCCAAAGCCCATCTCAATCATA 58.164 45.455 0.00 0.00 0.00 2.15
3304 3729 4.804139 CGTAGGAACACAGGTACAATGATC 59.196 45.833 4.48 0.00 0.00 2.92
3305 3730 5.394224 CGTAGGAACACAGGTACAATGATCT 60.394 44.000 4.48 0.00 0.00 2.75
3307 3732 6.620877 AGGAACACAGGTACAATGATCTAA 57.379 37.500 4.48 0.00 0.00 2.10
3308 3733 7.200434 AGGAACACAGGTACAATGATCTAAT 57.800 36.000 4.48 0.00 0.00 1.73
3309 3734 7.275920 AGGAACACAGGTACAATGATCTAATC 58.724 38.462 4.48 0.00 0.00 1.75
3310 3735 7.126421 AGGAACACAGGTACAATGATCTAATCT 59.874 37.037 4.48 0.00 0.00 2.40
3311 3736 7.770897 GGAACACAGGTACAATGATCTAATCTT 59.229 37.037 4.48 0.00 0.00 2.40
3312 3737 8.498054 AACACAGGTACAATGATCTAATCTTG 57.502 34.615 4.48 0.00 0.00 3.02
3313 3738 7.624549 ACACAGGTACAATGATCTAATCTTGT 58.375 34.615 4.48 0.00 35.92 3.16
3316 3741 8.321353 ACAGGTACAATGATCTAATCTTGTGAA 58.679 33.333 4.48 0.00 34.67 3.18
3338 3763 8.868916 GTGAAAAGACTTATGAAAGTTTGCAAA 58.131 29.630 8.05 8.05 46.09 3.68
3372 3811 9.653287 TGTTCAGATAGTATTCATTTTCGAGTT 57.347 29.630 0.00 0.00 0.00 3.01
3401 3840 1.202452 GCTTGGTGCATCTATTTGGGC 60.202 52.381 0.00 0.00 42.31 5.36
3482 3950 8.984764 GTTAACAGTTTCTTCCTTTTTGTTTGT 58.015 29.630 0.00 0.00 0.00 2.83
3727 4222 4.339247 CCAAATCTGGTCGCAATAGGAAAT 59.661 41.667 0.00 0.00 38.00 2.17
3891 4390 6.314648 GCACTGAATCTCACAGATATTTGACA 59.685 38.462 0.00 0.00 32.89 3.58
3964 4463 1.194781 AGTAGGGTGTGCAGGACTGG 61.195 60.000 1.01 0.00 0.00 4.00
3983 4482 5.793967 ACTGGAGGTAATCTAGATTCCCTT 58.206 41.667 25.59 13.36 37.28 3.95
4001 4500 9.408648 GATTCCCTTTCTTACATATTTTCCTCA 57.591 33.333 0.00 0.00 0.00 3.86
4023 4550 7.308049 CCTCAGTGCCTTCTTTTTAGTAGTTTC 60.308 40.741 0.00 0.00 0.00 2.78
4219 5035 3.904136 ACTGAGTGCACTGTATTTTGC 57.096 42.857 27.27 7.59 39.33 3.68
4272 5088 3.696051 TGAAGCTGGGAAAGATATTGCAC 59.304 43.478 0.00 0.00 0.00 4.57
4319 5135 0.534203 GTGGTCCTTTCGTGCTTCCA 60.534 55.000 0.00 0.00 0.00 3.53
4352 5168 5.046910 AGCACAATGTGAAAATACTTCCG 57.953 39.130 18.66 0.00 35.23 4.30
4364 5180 4.487714 AATACTTCCGGCTGATTCTGAA 57.512 40.909 0.00 0.00 0.00 3.02
4448 5269 6.723298 TTTTTCACCATGATGTAAGGTTGT 57.277 33.333 0.00 0.00 32.15 3.32
4457 5278 6.208599 CCATGATGTAAGGTTGTGGTAGTTTT 59.791 38.462 0.00 0.00 0.00 2.43
4467 5288 5.357596 GGTTGTGGTAGTTTTGTTAAGTGGA 59.642 40.000 0.00 0.00 0.00 4.02
4470 5291 5.467399 TGTGGTAGTTTTGTTAAGTGGATCG 59.533 40.000 0.00 0.00 0.00 3.69
4474 5295 7.073883 GGTAGTTTTGTTAAGTGGATCGAAAC 58.926 38.462 0.00 0.00 35.59 2.78
4497 5318 3.764885 ACTTGTTGGCGAGATTTATGC 57.235 42.857 0.00 0.00 0.00 3.14
4520 5341 7.142680 TGCTGCTATGGTTTAAGTTTGTTAAC 58.857 34.615 0.00 0.00 34.36 2.01
4636 5457 2.633967 TGCTTTCAGGTAAGTCCGGTAA 59.366 45.455 0.00 0.00 41.99 2.85
4643 5464 2.004733 GGTAAGTCCGGTAACATGTGC 58.995 52.381 0.00 0.00 0.00 4.57
4663 5495 9.236691 CATGTGCATAATACATGTTTTACTTCC 57.763 33.333 2.30 0.00 46.37 3.46
4853 5689 9.582648 ACTCCACTTTATGTTAAATTTACCTGT 57.417 29.630 0.00 0.00 0.00 4.00
5013 5874 1.156736 CAAAGGTGAGCCCTACAACG 58.843 55.000 0.00 0.00 45.47 4.10
5063 5961 7.609532 AGAGGCATATATTCTTAAGGACATTGC 59.390 37.037 1.85 5.79 0.00 3.56
5144 6060 1.202382 GCGCACGGGACTAGTAGAATT 60.202 52.381 0.30 0.00 0.00 2.17
5242 6190 4.458989 TGTGGGCTTCAAGTATTCATGAAC 59.541 41.667 11.07 0.00 0.00 3.18
5393 6341 2.536365 TCTTTGCGAGTATAAGCACCG 58.464 47.619 0.00 0.00 43.69 4.94
5408 6360 0.320374 CACCGTCCTAGCTCCACAAA 59.680 55.000 0.00 0.00 0.00 2.83
5449 6403 8.726988 TCCACTTAAGAATTCCGAATTACTTTG 58.273 33.333 10.09 13.84 0.00 2.77
5859 6975 9.537852 ACCTATACATATGAGACGGGTTATAAA 57.462 33.333 10.38 0.00 0.00 1.40
5875 6991 7.049754 GGGTTATAAAAACTCCACGGAATCTA 58.950 38.462 0.00 0.00 0.00 1.98
5877 6993 7.767659 GGTTATAAAAACTCCACGGAATCTAGT 59.232 37.037 0.00 0.00 0.00 2.57
5881 6997 9.901172 ATAAAAACTCCACGGAATCTAGTTTAT 57.099 29.630 0.00 0.00 38.95 1.40
5882 6998 8.631480 AAAAACTCCACGGAATCTAGTTTATT 57.369 30.769 0.00 0.00 38.95 1.40
5884 7000 7.845066 AACTCCACGGAATCTAGTTTATTTC 57.155 36.000 0.00 0.00 0.00 2.17
5885 7001 6.040878 ACTCCACGGAATCTAGTTTATTTCG 58.959 40.000 2.59 2.59 40.44 3.46
5886 7002 4.807304 TCCACGGAATCTAGTTTATTTCGC 59.193 41.667 3.81 0.00 38.61 4.70
5887 7003 4.569162 CCACGGAATCTAGTTTATTTCGCA 59.431 41.667 3.81 0.00 38.61 5.10
5890 7006 5.188194 CGGAATCTAGTTTATTTCGCAACG 58.812 41.667 0.00 0.00 29.25 4.10
5891 7007 5.220340 CGGAATCTAGTTTATTTCGCAACGT 60.220 40.000 0.00 0.00 29.25 3.99
5932 7048 2.976882 AGTTTGGCCTACCTACTGTTGA 59.023 45.455 3.32 0.00 36.63 3.18
5962 7088 7.010697 TGTTGCAATATGAACTGTTATACGG 57.989 36.000 0.59 0.00 0.00 4.02
6060 7191 2.470990 AGGTGGTAGAGATGACATGCA 58.529 47.619 0.00 0.00 0.00 3.96
6095 7226 2.358737 CTGGTGACAAGCCCGTCC 60.359 66.667 0.97 0.00 42.06 4.79
6298 7433 7.491372 CGGCTGAGATTCAACAGTATAAAGTTA 59.509 37.037 10.82 0.00 36.62 2.24
6311 7446 9.811995 ACAGTATAAAGTTAAGATATTGCACGA 57.188 29.630 0.00 0.00 0.00 4.35
6369 7504 7.833285 AAGTCTAATTGGCTAAAGAAACCAA 57.167 32.000 0.00 0.00 46.87 3.67
6426 7561 2.408271 TGTTGGATCCAGATGTGAGC 57.592 50.000 15.53 0.00 0.00 4.26
6428 7563 2.306805 TGTTGGATCCAGATGTGAGCTT 59.693 45.455 15.53 0.00 0.00 3.74
6478 7615 4.575645 ACGCTAAGAGACCTACATAGACAC 59.424 45.833 0.00 0.00 0.00 3.67
6482 7619 6.016943 GCTAAGAGACCTACATAGACACGAAT 60.017 42.308 0.00 0.00 0.00 3.34
6507 7644 7.919313 TCATTCGTACCGATTTGATTAGTAC 57.081 36.000 0.00 0.00 35.23 2.73
6508 7645 7.709947 TCATTCGTACCGATTTGATTAGTACT 58.290 34.615 0.00 0.00 35.23 2.73
6510 7647 5.741425 TCGTACCGATTTGATTAGTACTCG 58.259 41.667 0.00 0.00 0.00 4.18
6528 7665 8.425577 AGTACTCGGACTATTCAATCAAATTG 57.574 34.615 0.00 0.00 41.57 2.32
6530 7667 5.647658 ACTCGGACTATTCAATCAAATTGCA 59.352 36.000 0.00 0.00 40.05 4.08
6531 7668 6.319658 ACTCGGACTATTCAATCAAATTGCAT 59.680 34.615 0.00 0.00 40.05 3.96
6532 7669 7.498900 ACTCGGACTATTCAATCAAATTGCATA 59.501 33.333 0.00 0.00 40.05 3.14
6533 7670 8.219546 TCGGACTATTCAATCAAATTGCATAA 57.780 30.769 0.00 0.00 40.05 1.90
6534 7671 8.681806 TCGGACTATTCAATCAAATTGCATAAA 58.318 29.630 0.00 0.00 40.05 1.40
6535 7672 9.299963 CGGACTATTCAATCAAATTGCATAAAA 57.700 29.630 0.00 0.00 40.05 1.52
6562 7700 0.251165 ACTAGCAAAATGGCCCGTGT 60.251 50.000 0.00 0.00 0.00 4.49
6573 7716 4.622456 CCCGTGTGTTGCAACGGC 62.622 66.667 23.79 18.76 39.06 5.68
6615 7758 1.134640 CCAATGGCCATGACCACATTG 60.135 52.381 21.63 11.80 44.17 2.82
6651 7794 8.136165 ACCGACATACACTATCACTCTAATTTC 58.864 37.037 0.00 0.00 0.00 2.17
6672 7834 4.778904 TCCGTGAAATCGTGAACAATTTC 58.221 39.130 0.80 0.80 40.62 2.17
6682 7844 7.858052 ATCGTGAACAATTTCTGAAAATCAC 57.142 32.000 20.11 20.11 33.93 3.06
6691 7853 9.991388 ACAATTTCTGAAAATCACAAACATTTG 57.009 25.926 6.95 2.77 37.85 2.32
6724 7886 6.092122 TCGTGAAAATAGCTGAAATCGTGAAT 59.908 34.615 0.00 0.00 0.00 2.57
6765 7928 9.050601 TGAACATTTTTCCATATTTTCCAACAC 57.949 29.630 0.00 0.00 0.00 3.32
6900 8084 8.169268 ACATTTCTAGAATCGACGAACATTTTC 58.831 33.333 5.89 0.37 0.00 2.29
6901 8085 6.642683 TTCTAGAATCGACGAACATTTTCC 57.357 37.500 0.00 0.00 0.00 3.13
6913 8101 7.463469 ACGAACATTTTCCTGAAAATTGTTC 57.537 32.000 26.23 26.23 45.67 3.18
7014 8239 7.163032 GCGCGAACGTTTTATGAATAAATAACT 59.837 33.333 12.10 0.00 42.83 2.24
7049 8274 7.949186 AGTCACGAACAGTTTTTGAATTTTTC 58.051 30.769 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.438676 AATTTATGGTCAAACTTAGATCTCGG 57.561 34.615 0.00 0.00 0.00 4.63
49 50 8.293699 AGGTCTGATTGGTTAAATTTATGGTC 57.706 34.615 0.00 0.00 0.00 4.02
74 75 0.179015 TTTTTGCTCCCGCCACAGTA 60.179 50.000 0.00 0.00 34.43 2.74
79 80 2.691011 GGTATAATTTTTGCTCCCGCCA 59.309 45.455 0.00 0.00 34.43 5.69
81 82 3.380320 AGTGGTATAATTTTTGCTCCCGC 59.620 43.478 0.00 0.00 0.00 6.13
121 122 8.133024 AGCAAAAATTATACCACTGGATTCAA 57.867 30.769 0.71 0.00 0.00 2.69
127 128 4.202010 CGGGAGCAAAAATTATACCACTGG 60.202 45.833 0.00 0.00 0.00 4.00
164 165 4.728917 TTGACCGTACATTTAACCAACG 57.271 40.909 0.00 0.00 0.00 4.10
169 170 9.148104 AGATCTAAGTTTGACCGTACATTTAAC 57.852 33.333 0.00 0.00 0.00 2.01
176 177 8.976986 TTTCTAAGATCTAAGTTTGACCGTAC 57.023 34.615 0.00 0.00 0.00 3.67
180 181 6.455780 GCGCTTTCTAAGATCTAAGTTTGACC 60.456 42.308 0.00 0.00 0.00 4.02
191 192 0.847035 CGTCCGCGCTTTCTAAGATC 59.153 55.000 5.56 0.00 0.00 2.75
215 216 1.351017 ACTCCGTCCATTCCACAATGT 59.649 47.619 0.00 0.00 38.22 2.71
284 286 3.946201 CCCAGCCGATAGCCCAGG 61.946 72.222 0.00 0.00 45.47 4.45
292 294 3.866582 GCCTGTAGCCCAGCCGAT 61.867 66.667 0.00 0.00 40.06 4.18
441 447 2.099592 ACGTAGTTTCTGTGACACCGAA 59.900 45.455 8.22 8.22 37.78 4.30
479 485 6.823689 ACCACATCTTTAATCATCCAGTACAC 59.176 38.462 0.00 0.00 0.00 2.90
480 486 6.957631 ACCACATCTTTAATCATCCAGTACA 58.042 36.000 0.00 0.00 0.00 2.90
616 623 3.520290 ACAATGCAGCAATGAATCCAG 57.480 42.857 17.69 0.00 0.00 3.86
718 725 9.810545 TTCTGGGTAAAGTTATGTTTTCTTTTG 57.189 29.630 0.00 0.00 34.09 2.44
772 814 6.183360 GCTTACATAACACATGTAGAAAGCGT 60.183 38.462 0.00 0.00 33.94 5.07
776 818 6.183360 CGCAGCTTACATAACACATGTAGAAA 60.183 38.462 0.00 0.00 36.09 2.52
874 944 5.293569 CCCTTGATTTGATTACGTAGTGGTC 59.706 44.000 0.00 0.00 45.73 4.02
883 953 6.060788 AGATCTGAGCCCTTGATTTGATTAC 58.939 40.000 0.00 0.00 0.00 1.89
896 966 6.603940 AGAGTTCATAATAGATCTGAGCCC 57.396 41.667 5.18 0.00 0.00 5.19
922 992 3.916989 ACCTCCCCTTTTCACATAAGAGT 59.083 43.478 0.00 0.00 0.00 3.24
927 997 4.473559 CCTCTTACCTCCCCTTTTCACATA 59.526 45.833 0.00 0.00 0.00 2.29
940 1010 1.127343 AGCATGCTCCCTCTTACCTC 58.873 55.000 16.30 0.00 0.00 3.85
953 1023 9.643693 AGTTATATATGGCAAATTTTAGCATGC 57.356 29.630 10.51 10.51 38.06 4.06
1033 1107 0.608035 TGTTTCCTCCGGGACAATGC 60.608 55.000 0.00 0.00 42.05 3.56
1124 1199 2.317149 CTGGGGGACTCGAGAATGGC 62.317 65.000 21.68 2.56 0.00 4.40
1144 1219 2.035442 GTGGCGGAAAGCTCCACTC 61.035 63.158 13.00 0.00 45.04 3.51
1346 1421 4.097714 TGACGAGTAATTACCTAAACGCG 58.902 43.478 12.05 3.53 40.31 6.01
1448 1523 0.957395 CAGCATCCTCACCACACCAC 60.957 60.000 0.00 0.00 0.00 4.16
1462 1537 6.720112 ATAAATTTACATCACCAGCAGCAT 57.280 33.333 0.00 0.00 0.00 3.79
1589 1665 9.719355 TGACACTGACATACTATATTTTTGTGT 57.281 29.630 0.00 0.00 36.63 3.72
1644 1752 8.232913 ACAACCCGCACAAATAAAATCTATAT 57.767 30.769 0.00 0.00 0.00 0.86
1657 1765 2.307611 TACACCGACAACCCGCACAA 62.308 55.000 0.00 0.00 0.00 3.33
1671 1779 8.642908 AAAGTAAAAGAATGCAACTTTACACC 57.357 30.769 18.04 9.53 0.00 4.16
1687 1799 6.183360 GCTCTTAGGCCTCATGAAAGTAAAAG 60.183 42.308 9.68 2.30 0.00 2.27
1697 1809 1.142465 ACCATGCTCTTAGGCCTCATG 59.858 52.381 19.69 19.69 35.55 3.07
1726 1842 6.162079 GGGAACTTTATATAGCGGGTTACTC 58.838 44.000 0.00 0.00 0.00 2.59
1734 1850 7.745620 AATTGAAGGGGAACTTTATATAGCG 57.254 36.000 0.00 0.00 40.21 4.26
1748 1864 4.184649 AGGTTGGCTATAATTGAAGGGG 57.815 45.455 0.00 0.00 0.00 4.79
1753 1869 9.231297 GCTGATTATTAGGTTGGCTATAATTGA 57.769 33.333 0.00 0.00 0.00 2.57
1754 1870 9.013229 TGCTGATTATTAGGTTGGCTATAATTG 57.987 33.333 0.00 0.00 0.00 2.32
1755 1871 9.236006 CTGCTGATTATTAGGTTGGCTATAATT 57.764 33.333 0.00 0.00 0.00 1.40
1757 1873 6.655003 GCTGCTGATTATTAGGTTGGCTATAA 59.345 38.462 0.00 0.00 0.00 0.98
1774 1890 2.507944 CCGGGCTAAGCTGCTGAT 59.492 61.111 1.35 0.00 0.00 2.90
1856 1973 0.181114 CTGGCCAGCCTTGTATGCTA 59.819 55.000 22.33 0.00 36.81 3.49
1857 1974 1.077212 CTGGCCAGCCTTGTATGCT 60.077 57.895 22.33 0.00 40.41 3.79
1858 1975 2.123428 CCTGGCCAGCCTTGTATGC 61.123 63.158 28.39 0.00 36.94 3.14
1859 1976 1.454479 CCCTGGCCAGCCTTGTATG 60.454 63.158 28.39 10.80 36.94 2.39
1860 1977 3.010144 CCCTGGCCAGCCTTGTAT 58.990 61.111 28.39 0.00 36.94 2.29
1871 1988 1.837499 ATCTACGTAGGGCCCTGGC 60.837 63.158 35.81 24.54 41.06 4.85
1874 1991 1.115930 CAGCATCTACGTAGGGCCCT 61.116 60.000 31.35 31.35 0.00 5.19
1880 1997 4.815308 AGTACTGTACCAGCATCTACGTAG 59.185 45.833 16.73 16.73 34.37 3.51
1881 1998 4.774124 AGTACTGTACCAGCATCTACGTA 58.226 43.478 14.05 0.00 34.37 3.57
1883 2000 4.815308 AGTAGTACTGTACCAGCATCTACG 59.185 45.833 14.05 0.00 37.33 3.51
1885 2002 9.722184 CTATTAGTAGTACTGTACCAGCATCTA 57.278 37.037 13.29 6.00 34.37 1.98
1887 2004 8.393671 ACTATTAGTAGTACTGTACCAGCATC 57.606 38.462 13.29 0.25 39.36 3.91
1888 2005 7.997223 TGACTATTAGTAGTACTGTACCAGCAT 59.003 37.037 13.29 3.98 41.19 3.79
1889 2006 7.341030 TGACTATTAGTAGTACTGTACCAGCA 58.659 38.462 13.29 1.00 41.19 4.41
1890 2007 7.798596 TGACTATTAGTAGTACTGTACCAGC 57.201 40.000 13.29 5.33 41.19 4.85
1891 2008 8.333908 CGTTGACTATTAGTAGTACTGTACCAG 58.666 40.741 13.29 5.59 41.19 4.00
1892 2009 7.824289 ACGTTGACTATTAGTAGTACTGTACCA 59.176 37.037 13.29 0.00 41.19 3.25
1893 2010 8.119226 CACGTTGACTATTAGTAGTACTGTACC 58.881 40.741 13.29 0.53 41.19 3.34
1894 2011 8.660373 ACACGTTGACTATTAGTAGTACTGTAC 58.340 37.037 13.29 9.93 41.19 2.90
1895 2012 8.777865 ACACGTTGACTATTAGTAGTACTGTA 57.222 34.615 13.29 5.27 41.19 2.74
1896 2013 7.678947 ACACGTTGACTATTAGTAGTACTGT 57.321 36.000 13.29 1.84 41.19 3.55
1903 2020 9.770097 AGCTACTATACACGTTGACTATTAGTA 57.230 33.333 0.00 0.00 0.00 1.82
1904 2021 8.674263 AGCTACTATACACGTTGACTATTAGT 57.326 34.615 0.00 0.00 0.00 2.24
1906 2023 9.770097 ACTAGCTACTATACACGTTGACTATTA 57.230 33.333 0.00 0.00 0.00 0.98
1907 2024 8.674263 ACTAGCTACTATACACGTTGACTATT 57.326 34.615 0.00 0.00 0.00 1.73
1908 2025 8.674263 AACTAGCTACTATACACGTTGACTAT 57.326 34.615 0.00 0.00 0.00 2.12
1909 2026 9.035607 GTAACTAGCTACTATACACGTTGACTA 57.964 37.037 0.00 0.00 0.00 2.59
1910 2027 6.998968 AACTAGCTACTATACACGTTGACT 57.001 37.500 0.00 0.00 0.00 3.41
1911 2028 7.914465 AGTAACTAGCTACTATACACGTTGAC 58.086 38.462 3.94 0.00 30.13 3.18
1912 2029 8.498054 AAGTAACTAGCTACTATACACGTTGA 57.502 34.615 6.25 0.00 31.72 3.18
1913 2030 9.861138 CTAAGTAACTAGCTACTATACACGTTG 57.139 37.037 6.25 0.00 31.72 4.10
1914 2031 9.823647 TCTAAGTAACTAGCTACTATACACGTT 57.176 33.333 6.25 0.00 31.72 3.99
1915 2032 9.823647 TTCTAAGTAACTAGCTACTATACACGT 57.176 33.333 6.25 0.00 31.72 4.49
1963 2080 6.798427 ATATTATGAGAGCGTATGGTGGAT 57.202 37.500 0.00 0.00 0.00 3.41
1964 2081 7.780271 AGATATATTATGAGAGCGTATGGTGGA 59.220 37.037 0.00 0.00 0.00 4.02
1969 2086 9.676195 CTCCAAGATATATTATGAGAGCGTATG 57.324 37.037 3.78 0.00 0.00 2.39
1973 2090 5.982516 GCCTCCAAGATATATTATGAGAGCG 59.017 44.000 9.30 0.00 0.00 5.03
1981 2098 3.838317 AGCACGGCCTCCAAGATATATTA 59.162 43.478 0.00 0.00 0.00 0.98
1987 2104 2.270205 CAGCACGGCCTCCAAGAT 59.730 61.111 0.00 0.00 0.00 2.40
1997 2114 1.599419 GGTTGTAAAGTTGCAGCACGG 60.599 52.381 2.55 0.00 0.00 4.94
2015 2132 4.284746 GGATAAGAGAGAATGGAATCCGGT 59.715 45.833 0.00 0.00 0.00 5.28
2018 2135 8.525290 TTTTTGGATAAGAGAGAATGGAATCC 57.475 34.615 0.00 0.00 33.53 3.01
2045 2165 0.392998 CTACATGCACCGGGCTTCTT 60.393 55.000 6.32 0.00 45.15 2.52
2046 2166 1.221840 CTACATGCACCGGGCTTCT 59.778 57.895 6.32 0.00 45.15 2.85
2048 2168 2.438434 GCTACATGCACCGGGCTT 60.438 61.111 6.32 1.56 45.15 4.35
2090 2210 7.535489 AAGACTGCGTACTATAAATCCAAAC 57.465 36.000 0.00 0.00 0.00 2.93
2094 2214 6.985059 AGGAAAAGACTGCGTACTATAAATCC 59.015 38.462 0.00 0.00 0.00 3.01
2224 2344 4.315803 AGACGTCCTCACCAAACAATTAG 58.684 43.478 13.01 0.00 0.00 1.73
2228 2348 2.702592 AAGACGTCCTCACCAAACAA 57.297 45.000 13.01 0.00 0.00 2.83
2260 2381 5.773176 TCCCAAGTTCTTTTCATAGGGAAAC 59.227 40.000 0.00 0.00 44.89 2.78
2270 2598 6.581171 ATGAAGTCATCCCAAGTTCTTTTC 57.419 37.500 0.00 0.00 28.78 2.29
2289 2617 3.303938 TGGCTTTTGTCCAGGAAATGAA 58.696 40.909 0.00 0.00 0.00 2.57
2292 2620 3.509442 TCATGGCTTTTGTCCAGGAAAT 58.491 40.909 0.00 0.00 40.88 2.17
2298 2626 5.070180 TCAGAAATTTCATGGCTTTTGTCCA 59.930 36.000 19.99 0.00 38.09 4.02
2299 2627 5.540911 TCAGAAATTTCATGGCTTTTGTCC 58.459 37.500 19.99 0.00 0.00 4.02
2300 2628 7.481275 TTTCAGAAATTTCATGGCTTTTGTC 57.519 32.000 19.99 0.00 0.00 3.18
2301 2629 7.040961 CCATTTCAGAAATTTCATGGCTTTTGT 60.041 33.333 19.99 0.00 0.00 2.83
2302 2630 7.173562 TCCATTTCAGAAATTTCATGGCTTTTG 59.826 33.333 21.98 10.49 30.95 2.44
2303 2631 7.225725 TCCATTTCAGAAATTTCATGGCTTTT 58.774 30.769 21.98 0.00 30.95 2.27
2304 2632 6.771573 TCCATTTCAGAAATTTCATGGCTTT 58.228 32.000 21.98 0.40 30.95 3.51
2305 2633 6.363167 TCCATTTCAGAAATTTCATGGCTT 57.637 33.333 21.98 1.03 30.95 4.35
2306 2634 6.346096 CATCCATTTCAGAAATTTCATGGCT 58.654 36.000 21.98 14.43 30.95 4.75
2307 2635 5.007332 GCATCCATTTCAGAAATTTCATGGC 59.993 40.000 21.98 12.20 30.95 4.40
2308 2636 6.110033 TGCATCCATTTCAGAAATTTCATGG 58.890 36.000 21.24 21.24 31.69 3.66
2309 2637 7.413657 GGTTGCATCCATTTCAGAAATTTCATG 60.414 37.037 19.99 13.58 0.00 3.07
2310 2638 6.596497 GGTTGCATCCATTTCAGAAATTTCAT 59.404 34.615 19.99 2.11 0.00 2.57
2311 2639 5.933463 GGTTGCATCCATTTCAGAAATTTCA 59.067 36.000 19.99 0.00 0.00 2.69
2355 2683 1.203994 TGCGAAAGAGGTAGTACTGCC 59.796 52.381 21.41 21.41 35.42 4.85
2357 2685 2.531206 GCTGCGAAAGAGGTAGTACTG 58.469 52.381 5.39 0.00 0.00 2.74
2364 2692 0.465460 TTGTTGGCTGCGAAAGAGGT 60.465 50.000 0.00 0.00 0.00 3.85
2372 2700 4.361451 AAATTCTAGATTGTTGGCTGCG 57.639 40.909 0.00 0.00 0.00 5.18
2667 3091 2.437895 GCTAGGTCGTTTGGCCCC 60.438 66.667 0.00 0.00 0.00 5.80
2696 3120 4.899239 CTCCGATGGCGTCCCAGC 62.899 72.222 0.14 0.00 46.24 4.85
2702 3126 3.695606 AGTGTGCTCCGATGGCGT 61.696 61.111 0.00 0.00 35.23 5.68
2705 3129 1.812922 GCTCAGTGTGCTCCGATGG 60.813 63.158 9.90 0.00 0.00 3.51
2730 3154 5.716228 TCTTGGCAGGAACAAATGATATTGT 59.284 36.000 0.00 0.00 45.12 2.71
2731 3155 6.211587 TCTTGGCAGGAACAAATGATATTG 57.788 37.500 0.00 0.00 36.37 1.90
2748 3172 2.226437 CACCGCACCATATATTCTTGGC 59.774 50.000 0.00 0.00 36.41 4.52
2761 3185 2.750237 GAATCCACCCACCGCACC 60.750 66.667 0.00 0.00 0.00 5.01
2852 3276 4.329801 GCACCAACCAAGCAATTAATTAGC 59.670 41.667 0.00 7.34 0.00 3.09
2920 3344 9.311916 CATTTATGTTATGGGTGGTTACATTTG 57.688 33.333 0.00 0.00 32.23 2.32
3032 3457 7.514721 ACCAAAGTTTCACTAGAATTAGGTCA 58.485 34.615 0.00 0.00 32.89 4.02
3096 3521 1.398390 GTCCACGGCTGAAATAAGCAG 59.602 52.381 0.00 0.00 45.43 4.24
3226 3651 1.484065 GGCTATCCCATGACCTCCTCT 60.484 57.143 0.00 0.00 0.00 3.69
3266 3691 0.608640 CTACGGAACCAGTTGAGCCT 59.391 55.000 0.00 0.00 0.00 4.58
3296 3721 9.512588 AGTCTTTTCACAAGATTAGATCATTGT 57.487 29.630 0.00 0.00 33.79 2.71
3308 3733 9.787532 CAAACTTTCATAAGTCTTTTCACAAGA 57.212 29.630 0.00 0.00 43.74 3.02
3309 3734 8.534778 GCAAACTTTCATAAGTCTTTTCACAAG 58.465 33.333 0.00 0.00 43.74 3.16
3310 3735 8.031864 TGCAAACTTTCATAAGTCTTTTCACAA 58.968 29.630 0.00 0.00 43.74 3.33
3311 3736 7.542890 TGCAAACTTTCATAAGTCTTTTCACA 58.457 30.769 0.00 0.00 43.74 3.58
3312 3737 7.985634 TGCAAACTTTCATAAGTCTTTTCAC 57.014 32.000 0.00 0.00 43.74 3.18
3313 3738 8.994429 TTTGCAAACTTTCATAAGTCTTTTCA 57.006 26.923 8.05 0.00 43.74 2.69
3316 3741 8.947055 ACATTTGCAAACTTTCATAAGTCTTT 57.053 26.923 15.41 0.00 43.74 2.52
3372 3811 3.225104 AGATGCACCAAGCTCAAGAAAA 58.775 40.909 0.00 0.00 45.94 2.29
3450 3918 8.584063 AAAAGGAAGAAACTGTTAACTACCAA 57.416 30.769 7.22 0.00 0.00 3.67
3482 3950 3.806380 TGGCCAACGTCTTTTAGTTACA 58.194 40.909 0.61 0.00 0.00 2.41
3727 4222 8.579006 TCCTTTAGTTCATTAAGTAACGACTCA 58.421 33.333 0.00 0.00 33.58 3.41
3983 4482 6.721318 AGGCACTGAGGAAAATATGTAAGAA 58.279 36.000 0.00 0.00 37.18 2.52
4023 4550 5.869344 GCCTACCAATTTTCTTTAAGCCTTG 59.131 40.000 0.00 0.00 0.00 3.61
4178 4988 8.534333 TCAGTAAGCTAAGTTGTTCTACAATG 57.466 34.615 0.00 0.00 40.59 2.82
4182 4992 6.089685 GCACTCAGTAAGCTAAGTTGTTCTAC 59.910 42.308 0.00 0.00 0.00 2.59
4186 4996 4.511826 GTGCACTCAGTAAGCTAAGTTGTT 59.488 41.667 10.32 0.00 0.00 2.83
4219 5035 4.193826 ACTGTAGGCTGACATACACAAG 57.806 45.455 0.00 0.00 0.00 3.16
4272 5088 5.220548 CGATGAGTGTCTCTTTATTTGCCAG 60.221 44.000 0.00 0.00 0.00 4.85
4352 5168 1.736681 GCAGAGTGTTCAGAATCAGCC 59.263 52.381 0.00 0.00 0.00 4.85
4364 5180 3.441572 GCACCTGAAATATTGCAGAGTGT 59.558 43.478 28.03 16.89 36.53 3.55
4448 5269 5.856156 TCGATCCACTTAACAAAACTACCA 58.144 37.500 0.00 0.00 0.00 3.25
4457 5278 6.094325 ACAAGTTTGTTTCGATCCACTTAACA 59.906 34.615 0.00 0.00 38.47 2.41
4474 5295 4.324402 GCATAAATCTCGCCAACAAGTTTG 59.676 41.667 0.00 0.00 0.00 2.93
4497 5318 9.691362 AATGTTAACAAACTTAAACCATAGCAG 57.309 29.630 13.23 0.00 0.00 4.24
4520 5341 6.309737 GGAGCAGCAGACTTAAATTCAAAATG 59.690 38.462 0.00 0.00 0.00 2.32
4591 5412 3.055530 CACCAGAGGCAGTCAGAATAACT 60.056 47.826 0.00 0.00 0.00 2.24
4643 5464 7.855904 GCTTCCGGAAGTAAAACATGTATTATG 59.144 37.037 37.67 13.42 40.45 1.90
4663 5495 9.469807 GATATAAGATGGAGTATAATGCTTCCG 57.530 37.037 4.36 0.00 0.00 4.30
4701 5533 1.304381 TCAATTGGCCAGTCCCTGC 60.304 57.895 5.11 0.00 0.00 4.85
4880 5740 4.487714 TCTAAACCCTGCAAGAATCGAT 57.512 40.909 0.00 0.00 34.07 3.59
5060 5958 0.321475 TCAGGATGATGTGTGCGCAA 60.321 50.000 14.00 0.00 42.56 4.85
5422 6375 9.462606 AAAGTAATTCGGAATTCTTAAGTGGAT 57.537 29.630 18.59 4.40 32.38 3.41
5449 6403 8.402472 TGCATTATACAACTACAATTAGCCAAC 58.598 33.333 0.00 0.00 0.00 3.77
5669 6661 6.524933 CACGCCGAAACAAAATCATAACAATA 59.475 34.615 0.00 0.00 0.00 1.90
5676 6668 2.552315 AGACACGCCGAAACAAAATCAT 59.448 40.909 0.00 0.00 0.00 2.45
5859 6975 7.064253 CGAAATAAACTAGATTCCGTGGAGTTT 59.936 37.037 0.00 7.92 41.77 2.66
5875 6991 9.910511 CTATGTTAATACGTTGCGAAATAAACT 57.089 29.630 0.00 0.00 0.00 2.66
5877 6993 9.691795 CACTATGTTAATACGTTGCGAAATAAA 57.308 29.630 0.00 0.00 0.00 1.40
5880 6996 7.298507 ACACTATGTTAATACGTTGCGAAAT 57.701 32.000 0.00 0.00 0.00 2.17
5881 6997 6.709145 ACACTATGTTAATACGTTGCGAAA 57.291 33.333 0.00 0.00 0.00 3.46
5882 6998 6.473131 CCTACACTATGTTAATACGTTGCGAA 59.527 38.462 0.00 0.00 0.00 4.70
5884 7000 5.332055 GCCTACACTATGTTAATACGTTGCG 60.332 44.000 0.00 0.00 0.00 4.85
5885 7001 5.751990 AGCCTACACTATGTTAATACGTTGC 59.248 40.000 0.00 0.00 0.00 4.17
5886 7002 8.861033 TTAGCCTACACTATGTTAATACGTTG 57.139 34.615 0.00 0.00 0.00 4.10
5887 7003 8.689972 ACTTAGCCTACACTATGTTAATACGTT 58.310 33.333 0.00 0.00 28.96 3.99
5891 7007 9.826574 CCAAACTTAGCCTACACTATGTTAATA 57.173 33.333 0.00 0.00 38.72 0.98
5962 7088 4.522789 ACTTGGTGGTTTTATGTCCATGTC 59.477 41.667 0.00 0.00 36.09 3.06
6095 7226 4.695928 TCGTAATGTATGATCTCCTCGAGG 59.304 45.833 26.32 26.32 0.00 4.63
6175 7306 2.106074 CGGCCTTATGCGAGCACAA 61.106 57.895 0.00 0.00 42.61 3.33
6185 7316 1.457455 CCCCCAAATGCGGCCTTAT 60.457 57.895 0.00 0.00 0.00 1.73
6249 7384 8.333186 GCCGTTTGTTTTCTATCGTCTTAATAT 58.667 33.333 0.00 0.00 0.00 1.28
6258 7393 3.678072 TCTCAGCCGTTTGTTTTCTATCG 59.322 43.478 0.00 0.00 0.00 2.92
6269 7404 2.851195 ACTGTTGAATCTCAGCCGTTT 58.149 42.857 6.09 0.00 35.37 3.60
6337 7472 8.306038 TCTTTAGCCAATTAGACTTACGTAACA 58.694 33.333 3.29 0.00 0.00 2.41
6342 7477 7.118680 TGGTTTCTTTAGCCAATTAGACTTACG 59.881 37.037 0.00 0.00 0.00 3.18
6381 7516 4.037446 TGGCCGATCAAATTATTTGTAGCC 59.963 41.667 22.68 22.68 41.36 3.93
6386 7521 6.907206 ACAATTGGCCGATCAAATTATTTG 57.093 33.333 5.76 11.12 41.96 2.32
6392 7527 3.249986 CCAACAATTGGCCGATCAAAT 57.750 42.857 5.76 0.00 45.17 2.32
6426 7561 8.708742 GCTAATTTGTTTTGGCTTACCTTAAAG 58.291 33.333 0.00 0.00 36.63 1.85
6428 7563 7.958088 AGCTAATTTGTTTTGGCTTACCTTAA 58.042 30.769 0.00 0.00 40.06 1.85
6459 7594 7.555195 TGAATTCGTGTCTATGTAGGTCTCTTA 59.445 37.037 0.04 0.00 0.00 2.10
6461 7596 5.886474 TGAATTCGTGTCTATGTAGGTCTCT 59.114 40.000 0.04 0.00 0.00 3.10
6496 7633 9.745880 GATTGAATAGTCCGAGTACTAATCAAA 57.254 33.333 18.48 9.10 46.80 2.69
6498 7635 8.459911 TGATTGAATAGTCCGAGTACTAATCA 57.540 34.615 0.00 0.80 39.15 2.57
6507 7644 6.122850 TGCAATTTGATTGAATAGTCCGAG 57.877 37.500 0.00 0.00 42.83 4.63
6508 7645 6.698008 ATGCAATTTGATTGAATAGTCCGA 57.302 33.333 0.00 0.00 42.83 4.55
6531 7668 8.471609 GGCCATTTTGCTAGTTTACCTATTTTA 58.528 33.333 0.00 0.00 0.00 1.52
6532 7669 7.327975 GGCCATTTTGCTAGTTTACCTATTTT 58.672 34.615 0.00 0.00 0.00 1.82
6533 7670 6.127168 GGGCCATTTTGCTAGTTTACCTATTT 60.127 38.462 4.39 0.00 0.00 1.40
6534 7671 5.362717 GGGCCATTTTGCTAGTTTACCTATT 59.637 40.000 4.39 0.00 0.00 1.73
6535 7672 4.893524 GGGCCATTTTGCTAGTTTACCTAT 59.106 41.667 4.39 0.00 0.00 2.57
6536 7673 4.274978 GGGCCATTTTGCTAGTTTACCTA 58.725 43.478 4.39 0.00 0.00 3.08
6537 7674 3.096852 GGGCCATTTTGCTAGTTTACCT 58.903 45.455 4.39 0.00 0.00 3.08
6538 7675 2.159296 CGGGCCATTTTGCTAGTTTACC 60.159 50.000 4.39 0.00 0.00 2.85
6539 7676 2.490509 ACGGGCCATTTTGCTAGTTTAC 59.509 45.455 4.39 0.00 0.00 2.01
6540 7677 2.490115 CACGGGCCATTTTGCTAGTTTA 59.510 45.455 4.39 0.00 0.00 2.01
6541 7678 1.272212 CACGGGCCATTTTGCTAGTTT 59.728 47.619 4.39 0.00 0.00 2.66
6553 7691 3.522731 GTTGCAACACACGGGCCA 61.523 61.111 24.52 0.00 0.00 5.36
6580 7723 5.012871 TGGCCATTGGAGATTTTGATTTTGA 59.987 36.000 0.00 0.00 0.00 2.69
6581 7724 5.247084 TGGCCATTGGAGATTTTGATTTTG 58.753 37.500 0.00 0.00 0.00 2.44
6615 7758 0.652592 GTATGTCGGTGATGCAGCAC 59.347 55.000 26.53 26.53 38.05 4.40
6682 7844 9.965748 ATTTTCACGAGTTTAAACAAATGTTTG 57.034 25.926 20.06 4.51 46.56 2.93
6691 7853 8.776680 TTTCAGCTATTTTCACGAGTTTAAAC 57.223 30.769 10.47 10.47 0.00 2.01
6984 8209 3.190314 TCATAAAACGTTCGCGCATTT 57.810 38.095 8.75 0.40 46.04 2.32
6988 8213 5.843255 ATTTATTCATAAAACGTTCGCGC 57.157 34.783 0.00 0.00 37.81 6.86
6989 8214 8.524466 AGTTATTTATTCATAAAACGTTCGCG 57.476 30.769 0.00 0.00 39.01 5.87
7021 8246 9.581099 AAAATTCAAAAACTGTTCGTGACTTAT 57.419 25.926 5.81 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.