Multiple sequence alignment - TraesCS7D01G050700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G050700 chr7D 100.000 4178 0 0 1 4178 26450682 26446505 0.000000e+00 7716.0
1 TraesCS7D01G050700 chr7D 88.053 3164 344 24 1024 4178 26384129 26380991 0.000000e+00 3718.0
2 TraesCS7D01G050700 chr7D 81.818 660 70 29 12 651 16370927 16370298 3.730000e-140 508.0
3 TraesCS7D01G050700 chr7D 90.558 233 20 2 674 905 16370529 16370298 1.460000e-79 307.0
4 TraesCS7D01G050700 chr7D 81.921 354 42 12 677 1027 26384509 26384175 3.180000e-71 279.0
5 TraesCS7D01G050700 chr7D 81.910 199 27 3 481 675 26384455 26384262 4.320000e-35 159.0
6 TraesCS7D01G050700 chr7D 100.000 41 0 0 339 379 26384581 26384541 4.480000e-10 76.8
7 TraesCS7D01G050700 chr7D 97.222 36 1 0 293 328 26384610 26384575 1.250000e-05 62.1
8 TraesCS7D01G050700 chr7A 87.954 3163 341 26 1024 4178 15276234 15273104 0.000000e+00 3694.0
9 TraesCS7D01G050700 chr7A 86.591 2916 372 17 1105 4013 15254393 15251490 0.000000e+00 3201.0
10 TraesCS7D01G050700 chr7A 86.604 321 36 3 9 328 15277090 15276776 8.600000e-92 348.0
11 TraesCS7D01G050700 chr7A 83.534 249 24 9 781 1027 15276513 15276280 2.530000e-52 217.0
12 TraesCS7D01G050700 chr7A 100.000 41 0 0 339 379 15276782 15276742 4.480000e-10 76.8
13 TraesCS7D01G050700 chr4A 87.496 2847 342 12 1024 3864 718465233 718468071 0.000000e+00 3273.0
14 TraesCS7D01G050700 chr4A 87.179 2847 351 11 1024 3864 718897954 718895116 0.000000e+00 3223.0
15 TraesCS7D01G050700 chr4A 86.089 496 69 0 2576 3071 718249899 718250394 6.150000e-148 534.0
16 TraesCS7D01G050700 chr4A 92.690 342 24 1 2871 3211 718256367 718256708 3.750000e-135 492.0
17 TraesCS7D01G050700 chr4A 90.994 322 27 2 2565 2884 718250399 718250720 2.310000e-117 433.0
18 TraesCS7D01G050700 chr4A 89.583 288 24 3 674 956 718898346 718898060 1.100000e-95 361.0
19 TraesCS7D01G050700 chr4A 84.167 360 38 7 674 1027 718464841 718465187 8.660000e-87 331.0
20 TraesCS7D01G050700 chr4A 77.344 640 66 35 52 675 718898663 718898087 5.250000e-79 305.0
21 TraesCS7D01G050700 chr3D 79.021 2841 533 57 1058 3869 579371946 579369140 0.000000e+00 1886.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G050700 chr7D 26446505 26450682 4177 True 7716.000000 7716 100.0000 1 4178 1 chr7D.!!$R1 4177
1 TraesCS7D01G050700 chr7D 26380991 26384610 3619 True 858.980000 3718 89.8212 293 4178 5 chr7D.!!$R3 3885
2 TraesCS7D01G050700 chr7D 16370298 16370927 629 True 407.500000 508 86.1880 12 905 2 chr7D.!!$R2 893
3 TraesCS7D01G050700 chr7A 15251490 15254393 2903 True 3201.000000 3201 86.5910 1105 4013 1 chr7A.!!$R1 2908
4 TraesCS7D01G050700 chr7A 15273104 15277090 3986 True 1083.950000 3694 89.5230 9 4178 4 chr7A.!!$R2 4169
5 TraesCS7D01G050700 chr4A 718464841 718468071 3230 False 1802.000000 3273 85.8315 674 3864 2 chr4A.!!$F3 3190
6 TraesCS7D01G050700 chr4A 718895116 718898663 3547 True 1296.333333 3223 84.7020 52 3864 3 chr4A.!!$R1 3812
7 TraesCS7D01G050700 chr4A 718249899 718250720 821 False 483.500000 534 88.5415 2565 3071 2 chr4A.!!$F2 506
8 TraesCS7D01G050700 chr3D 579369140 579371946 2806 True 1886.000000 1886 79.0210 1058 3869 1 chr3D.!!$R1 2811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 641 0.031721 GTCGACCGGTGACTTGTCTT 59.968 55.0 14.63 0.0 33.54 3.01 F
635 646 0.032952 CCGGTGACTTGTCTTCCGAA 59.967 55.0 25.58 0.0 43.22 4.30 F
1452 1622 0.037447 GGAACCTCTCCAAGCTTGCT 59.963 55.0 21.43 0.0 44.67 3.91 F
1648 1824 0.321671 TACTGGCCTCAGAAGCACAC 59.678 55.0 3.32 0.0 43.49 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 1805 0.321671 GTGTGCTTCTGAGGCCAGTA 59.678 55.000 5.01 0.0 41.16 2.74 R
1638 1814 1.072965 AGGAAAGGAGGTGTGCTTCTG 59.927 52.381 0.00 0.0 32.16 3.02 R
2889 3074 0.854039 TCCAGAGGGGTAGGTCTCCA 60.854 60.000 0.00 0.0 39.70 3.86 R
3370 3638 2.275134 TCCAATTGCTCAAGCTCACA 57.725 45.000 0.00 0.0 42.66 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.172578 TACTCGCATCACTGGAACCG 59.827 55.000 0.00 0.00 0.00 4.44
97 107 0.035534 ATCACTTACCGTGCCATGCA 60.036 50.000 0.00 0.00 43.46 3.96
115 125 1.295792 CAGTTGCCGTGTGTGTTAGT 58.704 50.000 0.00 0.00 0.00 2.24
133 143 6.016943 GTGTTAGTGTGCCAGTAAAACCAATA 60.017 38.462 10.01 0.00 33.62 1.90
150 160 8.863872 AAACCAATATAGTTAAGCACTTGAGT 57.136 30.769 0.00 0.00 36.88 3.41
153 163 9.953565 ACCAATATAGTTAAGCACTTGAGTTTA 57.046 29.630 0.00 0.00 36.88 2.01
160 170 8.276252 AGTTAAGCACTTGAGTTTACAAAGAA 57.724 30.769 0.00 0.00 27.32 2.52
254 265 7.536622 GCTTCTTTTGTGAATTGTCTGTATCAG 59.463 37.037 0.00 0.00 0.00 2.90
267 278 5.069119 TGTCTGTATCAGAATCGCCAACTAT 59.931 40.000 0.88 0.00 42.46 2.12
268 279 6.264518 TGTCTGTATCAGAATCGCCAACTATA 59.735 38.462 0.88 0.00 42.46 1.31
269 280 7.039714 TGTCTGTATCAGAATCGCCAACTATAT 60.040 37.037 0.88 0.00 42.46 0.86
270 281 8.459635 GTCTGTATCAGAATCGCCAACTATATA 58.540 37.037 0.88 0.00 42.46 0.86
271 282 9.190317 TCTGTATCAGAATCGCCAACTATATAT 57.810 33.333 0.00 0.00 37.57 0.86
295 306 8.807948 ATATACTGTCCTTGCAGTTTTGTAAT 57.192 30.769 4.01 0.00 46.45 1.89
321 332 0.490017 TCCTTGACCCCTACAGGTGA 59.510 55.000 0.00 0.00 41.42 4.02
322 333 0.613777 CCTTGACCCCTACAGGTGAC 59.386 60.000 0.00 0.00 41.42 3.67
323 334 1.645710 CTTGACCCCTACAGGTGACT 58.354 55.000 0.00 0.00 41.42 3.41
335 346 2.414994 AGGTGACTGATGGCTCATTG 57.585 50.000 0.00 0.00 41.13 2.82
336 347 1.911357 AGGTGACTGATGGCTCATTGA 59.089 47.619 0.00 0.00 41.13 2.57
337 348 2.012673 GGTGACTGATGGCTCATTGAC 58.987 52.381 0.00 0.00 0.00 3.18
385 396 3.453424 GAAGCAAAGACTAGGCTAGCTC 58.547 50.000 21.86 16.45 36.76 4.09
387 398 3.103742 AGCAAAGACTAGGCTAGCTCTT 58.896 45.455 21.26 22.10 35.82 2.85
388 399 4.282496 AGCAAAGACTAGGCTAGCTCTTA 58.718 43.478 25.71 4.48 35.82 2.10
390 401 4.142138 GCAAAGACTAGGCTAGCTCTTACA 60.142 45.833 25.71 0.00 31.02 2.41
391 402 5.624738 GCAAAGACTAGGCTAGCTCTTACAA 60.625 44.000 25.71 0.00 31.02 2.41
392 403 6.398918 CAAAGACTAGGCTAGCTCTTACAAA 58.601 40.000 25.71 0.00 31.02 2.83
394 405 6.800072 AGACTAGGCTAGCTCTTACAAATT 57.200 37.500 21.26 0.00 0.00 1.82
395 406 7.899648 AGACTAGGCTAGCTCTTACAAATTA 57.100 36.000 21.26 0.00 0.00 1.40
397 408 7.014808 AGACTAGGCTAGCTCTTACAAATTAGG 59.985 40.741 21.26 0.00 0.00 2.69
398 409 4.709250 AGGCTAGCTCTTACAAATTAGGC 58.291 43.478 15.72 0.00 34.89 3.93
400 411 5.066593 GGCTAGCTCTTACAAATTAGGCAT 58.933 41.667 15.72 0.00 34.83 4.40
401 412 5.180304 GGCTAGCTCTTACAAATTAGGCATC 59.820 44.000 15.72 0.00 34.83 3.91
403 414 6.484977 GCTAGCTCTTACAAATTAGGCATCTT 59.515 38.462 7.70 0.00 0.00 2.40
404 415 6.934048 AGCTCTTACAAATTAGGCATCTTC 57.066 37.500 0.00 0.00 0.00 2.87
405 416 6.657875 AGCTCTTACAAATTAGGCATCTTCT 58.342 36.000 0.00 0.00 0.00 2.85
406 417 7.115414 AGCTCTTACAAATTAGGCATCTTCTT 58.885 34.615 0.00 0.00 0.00 2.52
407 418 7.613411 AGCTCTTACAAATTAGGCATCTTCTTT 59.387 33.333 0.00 0.00 0.00 2.52
408 419 8.246871 GCTCTTACAAATTAGGCATCTTCTTTT 58.753 33.333 0.00 0.00 0.00 2.27
458 469 9.915629 CATTAGTCTTATTATAGGTCACAGTCC 57.084 37.037 0.00 0.00 0.00 3.85
459 470 9.884814 ATTAGTCTTATTATAGGTCACAGTCCT 57.115 33.333 0.00 0.00 38.91 3.85
462 473 9.884814 AGTCTTATTATAGGTCACAGTCCTATT 57.115 33.333 9.32 0.00 43.30 1.73
468 479 9.615660 ATTATAGGTCACAGTCCTATTAATGGA 57.384 33.333 9.32 1.77 43.30 3.41
469 480 7.931015 ATAGGTCACAGTCCTATTAATGGAA 57.069 36.000 0.00 0.00 43.30 3.53
470 481 6.240549 AGGTCACAGTCCTATTAATGGAAG 57.759 41.667 0.00 3.98 35.10 3.46
471 482 5.726793 AGGTCACAGTCCTATTAATGGAAGT 59.273 40.000 0.00 4.51 35.10 3.01
472 483 5.817816 GGTCACAGTCCTATTAATGGAAGTG 59.182 44.000 20.30 20.30 40.34 3.16
473 484 5.817816 GTCACAGTCCTATTAATGGAAGTGG 59.182 44.000 22.74 14.01 39.88 4.00
474 485 5.724370 TCACAGTCCTATTAATGGAAGTGGA 59.276 40.000 22.74 15.08 39.88 4.02
475 486 6.214615 TCACAGTCCTATTAATGGAAGTGGAA 59.785 38.462 22.74 13.00 39.88 3.53
476 487 6.316390 CACAGTCCTATTAATGGAAGTGGAAC 59.684 42.308 19.51 6.96 37.80 3.62
477 488 5.823045 CAGTCCTATTAATGGAAGTGGAACC 59.177 44.000 0.00 0.00 37.80 3.62
478 489 5.491078 AGTCCTATTAATGGAAGTGGAACCA 59.509 40.000 0.00 0.00 37.80 3.67
479 490 5.589050 GTCCTATTAATGGAAGTGGAACCAC 59.411 44.000 15.25 15.25 46.50 4.16
488 499 2.946947 GTGGAACCACACATCCTGG 58.053 57.895 17.69 0.00 45.53 4.45
489 500 0.110486 GTGGAACCACACATCCTGGT 59.890 55.000 17.69 0.00 44.39 4.00
490 501 1.349688 GTGGAACCACACATCCTGGTA 59.650 52.381 17.69 0.00 41.45 3.25
491 502 2.026262 GTGGAACCACACATCCTGGTAT 60.026 50.000 17.69 0.00 41.45 2.73
492 503 2.238646 TGGAACCACACATCCTGGTATC 59.761 50.000 0.00 0.00 41.45 2.24
493 504 2.505819 GGAACCACACATCCTGGTATCT 59.494 50.000 0.00 0.00 41.45 1.98
494 505 3.709653 GGAACCACACATCCTGGTATCTA 59.290 47.826 0.00 0.00 41.45 1.98
495 506 4.202264 GGAACCACACATCCTGGTATCTAG 60.202 50.000 0.00 0.00 41.45 2.43
496 507 4.265856 ACCACACATCCTGGTATCTAGA 57.734 45.455 0.00 0.00 40.45 2.43
497 508 4.820775 ACCACACATCCTGGTATCTAGAT 58.179 43.478 10.73 10.73 40.45 1.98
498 509 4.590647 ACCACACATCCTGGTATCTAGATG 59.409 45.833 15.79 0.00 40.45 2.90
499 510 4.835056 CCACACATCCTGGTATCTAGATGA 59.165 45.833 15.79 3.87 38.72 2.92
500 511 5.047448 CCACACATCCTGGTATCTAGATGAG 60.047 48.000 15.79 8.14 38.72 2.90
501 512 5.772169 CACACATCCTGGTATCTAGATGAGA 59.228 44.000 15.79 5.18 38.72 3.27
502 513 6.266330 CACACATCCTGGTATCTAGATGAGAA 59.734 42.308 15.79 0.00 38.72 2.87
503 514 6.493115 ACACATCCTGGTATCTAGATGAGAAG 59.507 42.308 15.79 7.39 38.72 2.85
504 515 6.718912 CACATCCTGGTATCTAGATGAGAAGA 59.281 42.308 15.79 7.19 38.72 2.87
505 516 7.232330 CACATCCTGGTATCTAGATGAGAAGAA 59.768 40.741 15.79 0.00 38.72 2.52
506 517 7.232534 ACATCCTGGTATCTAGATGAGAAGAAC 59.767 40.741 15.79 3.36 38.72 3.01
507 518 6.673583 TCCTGGTATCTAGATGAGAAGAACA 58.326 40.000 15.79 2.05 37.85 3.18
508 519 7.301420 TCCTGGTATCTAGATGAGAAGAACAT 58.699 38.462 15.79 0.00 37.85 2.71
509 520 7.232330 TCCTGGTATCTAGATGAGAAGAACATG 59.768 40.741 15.79 0.68 37.85 3.21
510 521 7.015098 CCTGGTATCTAGATGAGAAGAACATGT 59.985 40.741 15.79 0.00 37.85 3.21
511 522 8.996651 TGGTATCTAGATGAGAAGAACATGTA 57.003 34.615 15.79 0.00 37.85 2.29
512 523 9.593565 TGGTATCTAGATGAGAAGAACATGTAT 57.406 33.333 15.79 0.00 37.85 2.29
513 524 9.853555 GGTATCTAGATGAGAAGAACATGTATG 57.146 37.037 15.79 0.00 37.85 2.39
517 528 9.853177 TCTAGATGAGAAGAACATGTATGTAGA 57.147 33.333 0.00 2.14 40.80 2.59
523 534 9.899226 TGAGAAGAACATGTATGTAGAATATCG 57.101 33.333 0.00 0.00 40.80 2.92
524 535 8.749841 AGAAGAACATGTATGTAGAATATCGC 57.250 34.615 0.00 0.00 40.80 4.58
525 536 8.580720 AGAAGAACATGTATGTAGAATATCGCT 58.419 33.333 0.00 0.00 40.80 4.93
526 537 9.197694 GAAGAACATGTATGTAGAATATCGCTT 57.802 33.333 0.00 0.00 40.80 4.68
528 539 9.627395 AGAACATGTATGTAGAATATCGCTTAC 57.373 33.333 0.00 0.00 40.80 2.34
529 540 8.758633 AACATGTATGTAGAATATCGCTTACC 57.241 34.615 0.00 0.00 40.80 2.85
530 541 7.892609 ACATGTATGTAGAATATCGCTTACCA 58.107 34.615 0.00 0.00 39.68 3.25
531 542 8.531982 ACATGTATGTAGAATATCGCTTACCAT 58.468 33.333 0.00 0.00 39.68 3.55
532 543 8.811378 CATGTATGTAGAATATCGCTTACCATG 58.189 37.037 0.00 0.00 0.00 3.66
533 544 6.811665 TGTATGTAGAATATCGCTTACCATGC 59.188 38.462 0.00 0.00 0.00 4.06
534 545 4.566004 TGTAGAATATCGCTTACCATGCC 58.434 43.478 0.00 0.00 0.00 4.40
535 546 3.769739 AGAATATCGCTTACCATGCCA 57.230 42.857 0.00 0.00 0.00 4.92
536 547 4.292186 AGAATATCGCTTACCATGCCAT 57.708 40.909 0.00 0.00 0.00 4.40
537 548 4.005650 AGAATATCGCTTACCATGCCATG 58.994 43.478 0.00 0.00 0.00 3.66
538 549 2.928801 TATCGCTTACCATGCCATGT 57.071 45.000 3.63 0.00 0.00 3.21
539 550 1.311859 ATCGCTTACCATGCCATGTG 58.688 50.000 3.63 0.00 0.00 3.21
540 551 0.747644 TCGCTTACCATGCCATGTGG 60.748 55.000 3.63 0.00 42.55 4.17
545 556 2.580276 CCATGCCATGTGGTTGCC 59.420 61.111 3.63 0.00 37.57 4.52
546 557 2.182284 CATGCCATGTGGTTGCCG 59.818 61.111 0.00 0.00 37.57 5.69
547 558 2.283101 ATGCCATGTGGTTGCCGT 60.283 55.556 0.35 0.00 37.57 5.68
548 559 2.638354 ATGCCATGTGGTTGCCGTG 61.638 57.895 0.35 0.00 37.57 4.94
549 560 3.294493 GCCATGTGGTTGCCGTGT 61.294 61.111 0.35 0.00 37.57 4.49
550 561 2.644418 CCATGTGGTTGCCGTGTG 59.356 61.111 0.00 0.00 0.00 3.82
551 562 2.192861 CCATGTGGTTGCCGTGTGT 61.193 57.895 0.00 0.00 0.00 3.72
552 563 1.282570 CATGTGGTTGCCGTGTGTC 59.717 57.895 0.00 0.00 0.00 3.67
553 564 1.148273 ATGTGGTTGCCGTGTGTCT 59.852 52.632 0.00 0.00 0.00 3.41
554 565 0.465460 ATGTGGTTGCCGTGTGTCTT 60.465 50.000 0.00 0.00 0.00 3.01
555 566 0.178301 TGTGGTTGCCGTGTGTCTTA 59.822 50.000 0.00 0.00 0.00 2.10
556 567 0.865769 GTGGTTGCCGTGTGTCTTAG 59.134 55.000 0.00 0.00 0.00 2.18
557 568 0.753867 TGGTTGCCGTGTGTCTTAGA 59.246 50.000 0.00 0.00 0.00 2.10
558 569 1.346395 TGGTTGCCGTGTGTCTTAGAT 59.654 47.619 0.00 0.00 0.00 1.98
559 570 2.224426 TGGTTGCCGTGTGTCTTAGATT 60.224 45.455 0.00 0.00 0.00 2.40
560 571 2.812011 GGTTGCCGTGTGTCTTAGATTT 59.188 45.455 0.00 0.00 0.00 2.17
561 572 3.120304 GGTTGCCGTGTGTCTTAGATTTC 60.120 47.826 0.00 0.00 0.00 2.17
562 573 3.678056 TGCCGTGTGTCTTAGATTTCT 57.322 42.857 0.00 0.00 0.00 2.52
563 574 4.794278 TGCCGTGTGTCTTAGATTTCTA 57.206 40.909 0.00 0.00 0.00 2.10
564 575 5.339008 TGCCGTGTGTCTTAGATTTCTAT 57.661 39.130 0.00 0.00 0.00 1.98
565 576 5.109210 TGCCGTGTGTCTTAGATTTCTATG 58.891 41.667 0.00 0.00 0.00 2.23
566 577 5.105513 TGCCGTGTGTCTTAGATTTCTATGA 60.106 40.000 0.42 0.42 32.37 2.15
567 578 5.460419 GCCGTGTGTCTTAGATTTCTATGAG 59.540 44.000 4.03 0.00 34.56 2.90
568 579 5.460419 CCGTGTGTCTTAGATTTCTATGAGC 59.540 44.000 4.03 2.53 34.56 4.26
569 580 6.036470 CGTGTGTCTTAGATTTCTATGAGCA 58.964 40.000 4.03 4.47 34.56 4.26
570 581 6.699204 CGTGTGTCTTAGATTTCTATGAGCAT 59.301 38.462 4.03 0.00 34.56 3.79
571 582 7.862873 CGTGTGTCTTAGATTTCTATGAGCATA 59.137 37.037 4.03 0.00 34.56 3.14
572 583 9.534565 GTGTGTCTTAGATTTCTATGAGCATAA 57.465 33.333 4.03 0.00 34.56 1.90
573 584 9.755804 TGTGTCTTAGATTTCTATGAGCATAAG 57.244 33.333 4.03 0.00 34.56 1.73
574 585 9.973450 GTGTCTTAGATTTCTATGAGCATAAGA 57.027 33.333 4.03 0.00 34.56 2.10
575 586 9.973450 TGTCTTAGATTTCTATGAGCATAAGAC 57.027 33.333 12.53 12.53 43.95 3.01
576 587 9.973450 GTCTTAGATTTCTATGAGCATAAGACA 57.027 33.333 13.90 0.00 43.51 3.41
597 608 8.400184 AGACATATAAATCACATCAATGGTGG 57.600 34.615 0.00 0.00 36.90 4.61
598 609 8.000709 AGACATATAAATCACATCAATGGTGGT 58.999 33.333 0.00 0.00 36.90 4.16
599 610 9.283768 GACATATAAATCACATCAATGGTGGTA 57.716 33.333 0.00 0.00 36.90 3.25
600 611 9.288576 ACATATAAATCACATCAATGGTGGTAG 57.711 33.333 0.00 0.00 36.90 3.18
601 612 4.989279 AAATCACATCAATGGTGGTAGC 57.011 40.909 0.00 0.00 36.90 3.58
602 613 2.418368 TCACATCAATGGTGGTAGCC 57.582 50.000 0.00 0.00 36.90 3.93
603 614 1.632920 TCACATCAATGGTGGTAGCCA 59.367 47.619 0.00 0.00 43.48 4.75
604 615 2.019249 CACATCAATGGTGGTAGCCAG 58.981 52.381 0.00 0.00 42.47 4.85
605 616 1.635487 ACATCAATGGTGGTAGCCAGT 59.365 47.619 0.00 0.00 42.47 4.00
606 617 2.292267 CATCAATGGTGGTAGCCAGTC 58.708 52.381 0.00 0.00 42.47 3.51
607 618 1.656587 TCAATGGTGGTAGCCAGTCT 58.343 50.000 0.00 0.00 42.47 3.24
608 619 1.985159 TCAATGGTGGTAGCCAGTCTT 59.015 47.619 0.00 0.00 42.47 3.01
609 620 2.027192 TCAATGGTGGTAGCCAGTCTTC 60.027 50.000 0.00 0.00 42.47 2.87
610 621 0.537188 ATGGTGGTAGCCAGTCTTCG 59.463 55.000 0.00 0.00 42.47 3.79
611 622 1.218316 GGTGGTAGCCAGTCTTCGG 59.782 63.158 0.00 0.00 32.34 4.30
612 623 1.542187 GGTGGTAGCCAGTCTTCGGT 61.542 60.000 0.00 0.00 32.34 4.69
613 624 0.108756 GTGGTAGCCAGTCTTCGGTC 60.109 60.000 0.00 0.00 32.34 4.79
614 625 1.139095 GGTAGCCAGTCTTCGGTCG 59.861 63.158 0.00 0.00 0.00 4.79
615 626 1.310933 GGTAGCCAGTCTTCGGTCGA 61.311 60.000 0.00 0.00 0.00 4.20
616 627 0.179169 GTAGCCAGTCTTCGGTCGAC 60.179 60.000 7.13 7.13 0.00 4.20
617 628 1.310933 TAGCCAGTCTTCGGTCGACC 61.311 60.000 25.28 25.28 31.83 4.79
627 638 2.732658 GGTCGACCGGTGACTTGT 59.267 61.111 20.85 0.00 36.58 3.16
628 639 1.372623 GGTCGACCGGTGACTTGTC 60.373 63.158 20.85 12.97 36.58 3.18
629 640 1.658673 GTCGACCGGTGACTTGTCT 59.341 57.895 14.63 0.00 33.54 3.41
630 641 0.031721 GTCGACCGGTGACTTGTCTT 59.968 55.000 14.63 0.00 33.54 3.01
631 642 0.313043 TCGACCGGTGACTTGTCTTC 59.687 55.000 14.63 0.00 0.00 2.87
632 643 0.666577 CGACCGGTGACTTGTCTTCC 60.667 60.000 14.63 0.00 0.00 3.46
633 644 0.666577 GACCGGTGACTTGTCTTCCG 60.667 60.000 14.63 20.92 40.72 4.30
634 645 1.111116 ACCGGTGACTTGTCTTCCGA 61.111 55.000 25.58 0.00 43.22 4.55
635 646 0.032952 CCGGTGACTTGTCTTCCGAA 59.967 55.000 25.58 0.00 43.22 4.30
636 647 1.337823 CCGGTGACTTGTCTTCCGAAT 60.338 52.381 25.58 0.00 43.22 3.34
637 648 1.993370 CGGTGACTTGTCTTCCGAATC 59.007 52.381 22.27 0.00 43.22 2.52
638 649 2.347731 GGTGACTTGTCTTCCGAATCC 58.652 52.381 2.35 0.00 0.00 3.01
639 650 2.289444 GGTGACTTGTCTTCCGAATCCA 60.289 50.000 2.35 0.00 0.00 3.41
640 651 3.399330 GTGACTTGTCTTCCGAATCCAA 58.601 45.455 2.35 0.00 0.00 3.53
641 652 3.433615 GTGACTTGTCTTCCGAATCCAAG 59.566 47.826 14.09 14.09 38.71 3.61
642 653 3.003480 GACTTGTCTTCCGAATCCAAGG 58.997 50.000 17.56 0.00 37.44 3.61
643 654 2.637872 ACTTGTCTTCCGAATCCAAGGA 59.362 45.455 17.56 0.00 37.44 3.36
644 655 2.762535 TGTCTTCCGAATCCAAGGAC 57.237 50.000 0.00 0.00 36.06 3.85
645 656 1.974957 TGTCTTCCGAATCCAAGGACA 59.025 47.619 0.00 0.00 36.06 4.02
646 657 2.028112 TGTCTTCCGAATCCAAGGACAG 60.028 50.000 0.00 0.00 36.06 3.51
647 658 2.233922 GTCTTCCGAATCCAAGGACAGA 59.766 50.000 0.00 0.00 36.06 3.41
648 659 3.107601 TCTTCCGAATCCAAGGACAGAT 58.892 45.455 0.00 0.00 36.06 2.90
649 660 3.133003 TCTTCCGAATCCAAGGACAGATC 59.867 47.826 0.00 0.00 36.06 2.75
650 661 1.762957 TCCGAATCCAAGGACAGATCC 59.237 52.381 0.00 0.00 46.69 3.36
666 677 8.770438 GGACAGATCCAATATAGAACAAGATC 57.230 38.462 0.00 0.00 45.47 2.75
667 678 7.821846 GGACAGATCCAATATAGAACAAGATCC 59.178 40.741 0.00 0.00 45.47 3.36
668 679 8.267620 ACAGATCCAATATAGAACAAGATCCA 57.732 34.615 0.00 0.00 31.16 3.41
669 680 8.373981 ACAGATCCAATATAGAACAAGATCCAG 58.626 37.037 0.00 0.00 31.16 3.86
670 681 8.591940 CAGATCCAATATAGAACAAGATCCAGA 58.408 37.037 0.00 0.00 31.16 3.86
671 682 8.592809 AGATCCAATATAGAACAAGATCCAGAC 58.407 37.037 0.00 0.00 31.16 3.51
672 683 7.067496 TCCAATATAGAACAAGATCCAGACC 57.933 40.000 0.00 0.00 0.00 3.85
719 734 4.899502 GGAACCACATATCCTGGTATCTG 58.100 47.826 2.54 0.00 41.45 2.90
726 741 0.322975 ATCCTGGTATCTGGATGCGC 59.677 55.000 13.27 0.00 45.97 6.09
731 746 1.209261 TGGTATCTGGATGCGCAGAAA 59.791 47.619 18.32 1.92 0.00 2.52
737 752 1.332997 CTGGATGCGCAGAAAATCCTC 59.667 52.381 23.52 11.05 40.53 3.71
741 756 3.406764 GATGCGCAGAAAATCCTCCTAT 58.593 45.455 18.32 0.00 0.00 2.57
792 913 6.822170 TGTAGAATATCACTACAGTGTCTCGT 59.178 38.462 14.60 0.00 43.12 4.18
804 925 2.028484 TCTCGTGGTTGCCGTGTC 59.972 61.111 0.00 0.00 0.00 3.67
852 973 3.598019 ACAAATCACATCAATGGTGGC 57.402 42.857 0.00 0.00 36.90 5.01
941 1062 0.243095 AGACCGGAGTTCGTAAGCAC 59.757 55.000 9.46 0.00 37.11 4.40
942 1063 0.038892 GACCGGAGTTCGTAAGCACA 60.039 55.000 9.46 0.00 35.32 4.57
945 1066 1.493772 CGGAGTTCGTAAGCACACAA 58.506 50.000 0.00 0.00 35.32 3.33
951 1072 5.338614 AGTTCGTAAGCACACAAACATAC 57.661 39.130 0.00 0.00 35.32 2.39
952 1073 5.054477 AGTTCGTAAGCACACAAACATACT 58.946 37.500 0.00 0.00 35.32 2.12
953 1074 5.526111 AGTTCGTAAGCACACAAACATACTT 59.474 36.000 0.00 0.00 35.32 2.24
954 1075 5.337219 TCGTAAGCACACAAACATACTTG 57.663 39.130 0.00 0.00 37.18 3.16
955 1076 3.906008 CGTAAGCACACAAACATACTTGC 59.094 43.478 0.00 0.00 0.00 4.01
956 1077 4.553742 CGTAAGCACACAAACATACTTGCA 60.554 41.667 0.00 0.00 32.24 4.08
957 1078 4.589216 AAGCACACAAACATACTTGCAT 57.411 36.364 0.00 0.00 32.24 3.96
958 1079 5.703978 AAGCACACAAACATACTTGCATA 57.296 34.783 0.00 0.00 32.24 3.14
977 1098 5.103898 TGCATACTTCATACCCAAATACCCA 60.104 40.000 0.00 0.00 0.00 4.51
983 1104 7.878495 ACTTCATACCCAAATACCCATAAGAA 58.122 34.615 0.00 0.00 0.00 2.52
1016 1138 2.305635 TGGCAATGTCTAAGCTCAGGAA 59.694 45.455 0.00 0.00 0.00 3.36
1033 1203 2.375174 AGGAATCTTGTACCAGCCACAA 59.625 45.455 0.00 0.00 34.80 3.33
1102 1272 4.856607 GGGACGCGCTTCTCTCCG 62.857 72.222 14.02 0.00 0.00 4.63
1428 1598 3.537874 GGGAGAGTACGCCCGCAT 61.538 66.667 5.86 0.00 45.42 4.73
1452 1622 0.037447 GGAACCTCTCCAAGCTTGCT 59.963 55.000 21.43 0.00 44.67 3.91
1605 1781 5.931724 CCACCAAATTAACATCCTTCCAAAC 59.068 40.000 0.00 0.00 0.00 2.93
1620 1796 7.238710 TCCTTCCAAACCTTAGAAAGCTTTAT 58.761 34.615 12.68 12.12 0.00 1.40
1629 1805 9.740710 AACCTTAGAAAGCTTTATCTACAACAT 57.259 29.630 12.68 0.00 0.00 2.71
1638 1814 5.467063 GCTTTATCTACAACATACTGGCCTC 59.533 44.000 3.32 0.00 0.00 4.70
1648 1824 0.321671 TACTGGCCTCAGAAGCACAC 59.678 55.000 3.32 0.00 43.49 3.82
1649 1825 1.673665 CTGGCCTCAGAAGCACACC 60.674 63.158 3.32 0.00 43.49 4.16
1651 1827 1.376553 GGCCTCAGAAGCACACCTC 60.377 63.158 0.00 0.00 0.00 3.85
1661 1837 1.140312 AGCACACCTCCTTTCCTTGA 58.860 50.000 0.00 0.00 0.00 3.02
1774 1950 3.997681 GTCCCTCACTTCTCTAAACTTGC 59.002 47.826 0.00 0.00 0.00 4.01
1785 1961 5.853936 TCTCTAAACTTGCAAGCTTGTAGA 58.146 37.500 26.27 21.02 0.00 2.59
1807 1983 1.975680 TCTATGGCCCTATTCCGGAAC 59.024 52.381 21.56 6.07 0.00 3.62
1835 2011 0.394080 AGCATGGCCTCTCTTGAAGC 60.394 55.000 3.32 0.00 0.00 3.86
1837 2013 1.830279 CATGGCCTCTCTTGAAGCAA 58.170 50.000 3.32 0.00 31.55 3.91
1846 2022 6.127507 GGCCTCTCTTGAAGCAATTTATTTCT 60.128 38.462 0.00 0.00 31.55 2.52
1847 2023 6.971756 GCCTCTCTTGAAGCAATTTATTTCTC 59.028 38.462 0.00 0.00 30.40 2.87
1851 2028 5.710099 TCTTGAAGCAATTTATTTCTCGGGT 59.290 36.000 0.00 0.00 0.00 5.28
1855 2032 7.479980 TGAAGCAATTTATTTCTCGGGTAATG 58.520 34.615 0.00 0.00 0.00 1.90
1930 2108 5.960113 AGATACTAGATTTATCAGGCAGCG 58.040 41.667 0.00 0.00 0.00 5.18
1934 2112 3.482156 AGATTTATCAGGCAGCGACAT 57.518 42.857 0.00 0.00 0.00 3.06
1944 2122 1.142748 CAGCGACATCTCAGGGGAC 59.857 63.158 0.00 0.00 0.00 4.46
2004 2182 4.341806 TCAAACAAGATGCAAGTGTTGGAT 59.658 37.500 12.19 0.00 44.85 3.41
2008 2186 4.341806 ACAAGATGCAAGTGTTGGATTTGA 59.658 37.500 15.70 0.00 42.07 2.69
2015 2193 5.181811 TGCAAGTGTTGGATTTGACTGATAG 59.818 40.000 0.00 0.00 0.00 2.08
2020 2198 7.050377 AGTGTTGGATTTGACTGATAGTATGG 58.950 38.462 0.00 0.00 0.00 2.74
2028 2206 5.531122 TGACTGATAGTATGGTAAGTGGC 57.469 43.478 0.00 0.00 0.00 5.01
2029 2207 4.344102 TGACTGATAGTATGGTAAGTGGCC 59.656 45.833 0.00 0.00 0.00 5.36
2044 2222 3.795905 GCCCCATGCCCAATATGG 58.204 61.111 0.00 0.00 43.77 2.74
2110 2288 1.962100 AGCTTACAGGACCTATACCGC 59.038 52.381 0.00 0.00 0.00 5.68
2159 2337 7.807977 TGCTTATTTTGGATCTAGATGGAAC 57.192 36.000 10.74 0.00 0.00 3.62
2197 2375 6.308282 CGTAGTCACTGAAGATCACCTAAAAC 59.692 42.308 0.00 0.00 0.00 2.43
2232 2410 4.735369 TGAAGATCTTAGGTTTGGGCAAA 58.265 39.130 8.25 0.00 0.00 3.68
2260 2438 1.186200 TGAGATCAAGGTCAGTCCGG 58.814 55.000 0.00 0.00 41.99 5.14
2285 2463 3.007635 GGGTTCCTCCATTCAAACTACG 58.992 50.000 0.00 0.00 38.11 3.51
2293 2471 3.745975 TCCATTCAAACTACGAGCAGTTG 59.254 43.478 0.00 0.00 38.74 3.16
2299 2477 4.980434 TCAAACTACGAGCAGTTGTCTTAC 59.020 41.667 0.00 0.00 38.74 2.34
2354 2532 2.977914 GCTTAGATCACAGACAAGCCA 58.022 47.619 0.00 0.00 36.46 4.75
2358 2536 3.708403 AGATCACAGACAAGCCATGAA 57.292 42.857 0.00 0.00 0.00 2.57
2360 2538 3.755378 AGATCACAGACAAGCCATGAAAC 59.245 43.478 0.00 0.00 0.00 2.78
2431 2609 3.379688 GGTTGCATTTTCAAGGGCAAAAA 59.620 39.130 0.00 0.00 46.50 1.94
2446 2624 3.259123 GGCAAAAATTGTGGATCTGTCCT 59.741 43.478 0.00 0.00 45.32 3.85
2513 2691 2.676839 CAGCAGAAGTAATGGCTCTGTG 59.323 50.000 1.82 0.00 33.60 3.66
2516 2694 2.676839 CAGAAGTAATGGCTCTGTGCAG 59.323 50.000 3.96 0.00 45.15 4.41
2550 2728 4.170256 CCGGTACAATTCCAAAATTTCCG 58.830 43.478 0.00 0.00 38.86 4.30
2616 2794 2.026641 ACATTGCCATCAGATTTCGGG 58.973 47.619 0.00 0.00 0.00 5.14
2633 2811 3.216292 GGCACCGTTGTTGCAGGT 61.216 61.111 0.00 0.00 39.12 4.00
2635 2813 1.448922 GGCACCGTTGTTGCAGGTTA 61.449 55.000 0.00 0.00 35.85 2.85
2640 2818 2.486592 ACCGTTGTTGCAGGTTATTAGC 59.513 45.455 0.00 0.00 33.96 3.09
2643 2821 3.181510 CGTTGTTGCAGGTTATTAGCCTC 60.182 47.826 0.00 0.00 33.31 4.70
2664 2842 8.664079 AGCCTCTATAACAATTCAATATCAGGT 58.336 33.333 0.00 0.00 0.00 4.00
2667 2845 9.144747 CTCTATAACAATTCAATATCAGGTCCG 57.855 37.037 0.00 0.00 0.00 4.79
2688 2866 4.092529 CCGATTCCATCTTCATTATGCTCG 59.907 45.833 0.00 0.00 0.00 5.03
2697 2875 4.994217 TCTTCATTATGCTCGTTGTCACAA 59.006 37.500 0.00 0.00 0.00 3.33
2704 2882 1.001378 GCTCGTTGTCACAATTGGCTT 60.001 47.619 10.83 0.00 0.00 4.35
2706 2884 3.705604 CTCGTTGTCACAATTGGCTTTT 58.294 40.909 10.83 0.00 0.00 2.27
2707 2885 3.443037 TCGTTGTCACAATTGGCTTTTG 58.557 40.909 10.83 0.00 0.00 2.44
2877 3062 8.871686 ACCTTGTTTTTGTTGATCTTTCATAC 57.128 30.769 0.00 0.00 0.00 2.39
2902 3087 2.480642 ATTCTCTGGAGACCTACCCC 57.519 55.000 0.00 0.00 37.14 4.95
2910 3095 1.787676 GGAGACCTACCCCTCTGGATA 59.212 57.143 0.00 0.00 38.00 2.59
2943 3128 2.925563 ACCGTACTTAGCATTGTTACGC 59.074 45.455 0.00 0.00 0.00 4.42
2944 3129 3.184541 CCGTACTTAGCATTGTTACGCT 58.815 45.455 0.00 0.00 42.34 5.07
2978 3163 2.103941 TGTTTTCTGGCCAAATTCCCAC 59.896 45.455 7.01 0.00 0.00 4.61
2992 3177 7.748691 CAAATTCCCACTGAAATTGGAAAAT 57.251 32.000 0.00 0.00 39.28 1.82
3027 3212 7.042797 ACAGTTTTTAGATCTTGCACACAAT 57.957 32.000 0.00 0.00 34.61 2.71
3097 3282 1.344438 CCCGCACTTCTGGATATAGCA 59.656 52.381 0.00 0.00 0.00 3.49
3106 3374 7.637229 CACTTCTGGATATAGCAATGTTCTTG 58.363 38.462 0.00 0.00 0.00 3.02
3107 3375 6.769822 ACTTCTGGATATAGCAATGTTCTTGG 59.230 38.462 0.00 0.00 0.00 3.61
3136 3404 4.042062 CCATTCATCATAGACAAGGGCCTA 59.958 45.833 6.41 0.00 0.00 3.93
3137 3405 5.280882 CCATTCATCATAGACAAGGGCCTAT 60.281 44.000 6.41 0.00 0.00 2.57
3139 3407 5.912149 TCATCATAGACAAGGGCCTATTT 57.088 39.130 6.41 0.00 0.00 1.40
3148 3416 5.652452 AGACAAGGGCCTATTTTGTACAATC 59.348 40.000 6.41 0.00 35.35 2.67
3149 3417 5.580022 ACAAGGGCCTATTTTGTACAATCT 58.420 37.500 6.41 2.47 33.57 2.40
3216 3484 5.529800 TGTTCTTACTAAAGGGCAACAACTC 59.470 40.000 0.00 0.00 39.74 3.01
3219 3487 3.418684 ACTAAAGGGCAACAACTCGAT 57.581 42.857 0.00 0.00 39.74 3.59
3235 3503 4.017126 ACTCGATTTTTCCCCTGAAATCC 58.983 43.478 0.00 0.00 40.08 3.01
3236 3504 4.263949 ACTCGATTTTTCCCCTGAAATCCT 60.264 41.667 0.00 0.00 40.08 3.24
3244 3512 6.590656 TTTCCCCTGAAATCCTATACATGT 57.409 37.500 2.69 2.69 35.58 3.21
3261 3529 5.208624 ACATGTCGATTCTTGATTTGTCG 57.791 39.130 0.00 0.00 0.00 4.35
3281 3549 2.979813 CGTGCAACAATTTAACTGGAGC 59.020 45.455 0.00 0.00 35.74 4.70
3306 3574 5.708736 TCCCTCAAGATATTGGTGCTTTA 57.291 39.130 0.00 0.00 0.00 1.85
3396 3664 3.695060 AGCTTGAGCAATTGGAATCTCTG 59.305 43.478 7.72 4.36 45.16 3.35
3408 3676 3.588842 TGGAATCTCTGGACCTGTCAAAT 59.411 43.478 0.00 0.00 0.00 2.32
3422 3690 5.769662 ACCTGTCAAATAATGAGCTTTCACA 59.230 36.000 0.00 0.00 39.19 3.58
3497 3765 7.015098 CCTGTCATATAACTCTCTGTCAGGAAT 59.985 40.741 8.50 0.00 43.30 3.01
3537 3805 5.753438 TCAGTTTCATACTTATGACGCATCC 59.247 40.000 0.00 0.00 42.00 3.51
3539 3807 5.681437 AGTTTCATACTTATGACGCATCCGT 60.681 40.000 0.00 0.00 42.18 4.69
3554 3822 2.754946 TCCGTCTACATTGGGAACAC 57.245 50.000 0.00 0.00 42.67 3.32
3579 3847 4.400120 GTTTATGTGGTTACCCCTTGACA 58.600 43.478 0.00 0.00 0.00 3.58
3584 3852 3.227614 GTGGTTACCCCTTGACAAACAT 58.772 45.455 0.00 0.00 0.00 2.71
3623 3891 0.532573 AGTCGACCTACACATGCAGG 59.467 55.000 13.01 0.00 37.97 4.85
3639 3907 1.698532 GCAGGTCATGGAGATGGATCT 59.301 52.381 0.00 0.00 40.50 2.75
3746 4014 8.634475 AAAAGCTGAAGAACTGTTTATTTCAC 57.366 30.769 10.17 8.52 0.00 3.18
3767 4035 4.666253 TGTGGAAGGGCTGCAGGC 62.666 66.667 30.97 30.97 40.90 4.85
3814 4082 1.137675 GATGGGCCAATTTGAAGAGGC 59.862 52.381 11.89 0.00 46.28 4.70
3820 4088 3.320626 GCCAATTTGAAGAGGCAAGTTC 58.679 45.455 0.00 0.00 46.26 3.01
3821 4089 3.243839 GCCAATTTGAAGAGGCAAGTTCA 60.244 43.478 0.00 0.00 46.26 3.18
3931 4204 2.732412 ATCCGAGAGTGTTGTGACAG 57.268 50.000 0.00 0.00 36.20 3.51
3954 4227 8.584157 ACAGAAGTGTATTTTATGAATTGGCAA 58.416 29.630 0.68 0.68 34.05 4.52
3965 4238 0.796312 AATTGGCAAGTACGACTGCG 59.204 50.000 5.96 0.00 44.79 5.18
3987 4260 6.264909 CGGTGTTCTCCGTATGTAATAAAC 57.735 41.667 5.33 0.00 44.77 2.01
3992 4265 8.313931 GTGTTCTCCGTATGTAATAAACGTTAC 58.686 37.037 0.00 0.00 34.90 2.50
3993 4266 8.026026 TGTTCTCCGTATGTAATAAACGTTACA 58.974 33.333 0.00 2.06 45.55 2.41
4016 4293 8.225603 ACACTATTTATAAACCTTCTGCCATG 57.774 34.615 0.00 0.00 0.00 3.66
4028 4305 8.588290 AACCTTCTGCCATGTATTGTATTTTA 57.412 30.769 0.00 0.00 0.00 1.52
4080 4357 3.644265 TCTTGCCCTGTAGTACTGTTGAA 59.356 43.478 5.39 0.00 0.00 2.69
4081 4358 3.678056 TGCCCTGTAGTACTGTTGAAG 57.322 47.619 5.39 0.00 0.00 3.02
4089 4366 7.375834 CCTGTAGTACTGTTGAAGTGTTGATA 58.624 38.462 5.39 0.00 40.26 2.15
4092 4369 6.727824 AGTACTGTTGAAGTGTTGATATGC 57.272 37.500 0.00 0.00 40.26 3.14
4145 4422 9.760660 CTTCAGATACATGTTAAGTAAGCAAAC 57.239 33.333 2.30 0.00 0.00 2.93
4147 4424 7.064134 TCAGATACATGTTAAGTAAGCAAACCG 59.936 37.037 2.30 0.00 0.00 4.44
4165 4442 6.678900 GCAAACCGAATCAATTCTAGAAGCAT 60.679 38.462 11.53 0.00 34.69 3.79
4170 4447 8.367911 ACCGAATCAATTCTAGAAGCATACATA 58.632 33.333 11.53 0.00 34.69 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.587990 CGTCATCTAGAAATACCATGATGTCC 59.412 42.308 0.00 0.00 34.63 4.02
97 107 1.295792 CACTAACACACACGGCAACT 58.704 50.000 0.00 0.00 0.00 3.16
115 125 8.865420 TTAACTATATTGGTTTTACTGGCACA 57.135 30.769 0.00 0.00 0.00 4.57
133 143 9.555727 TCTTTGTAAACTCAAGTGCTTAACTAT 57.444 29.630 0.00 0.00 38.56 2.12
177 188 8.648097 GCCGACTTGAATATATAATGTGTACTG 58.352 37.037 0.00 0.00 0.00 2.74
224 235 7.043565 ACAGACAATTCACAAAAGAAGCATTT 58.956 30.769 0.00 0.00 0.00 2.32
237 248 5.277058 GGCGATTCTGATACAGACAATTCAC 60.277 44.000 0.74 0.00 40.46 3.18
254 265 9.680315 GGACAGTATATATATAGTTGGCGATTC 57.320 37.037 7.28 2.14 0.00 2.52
295 306 2.293519 TGTAGGGGTCAAGGATGGATGA 60.294 50.000 0.00 0.00 0.00 2.92
321 332 2.303890 TCAGTGTCAATGAGCCATCAGT 59.696 45.455 0.00 0.00 39.29 3.41
322 333 2.981898 TCAGTGTCAATGAGCCATCAG 58.018 47.619 0.00 0.00 39.29 2.90
323 334 3.275999 CATCAGTGTCAATGAGCCATCA 58.724 45.455 9.12 0.00 40.50 3.07
324 335 2.033049 GCATCAGTGTCAATGAGCCATC 59.967 50.000 9.12 0.00 0.00 3.51
325 336 2.022195 GCATCAGTGTCAATGAGCCAT 58.978 47.619 9.12 0.00 0.00 4.40
326 337 1.456296 GCATCAGTGTCAATGAGCCA 58.544 50.000 9.12 0.00 0.00 4.75
327 338 0.737219 GGCATCAGTGTCAATGAGCC 59.263 55.000 20.28 20.28 35.41 4.70
328 339 0.737219 GGGCATCAGTGTCAATGAGC 59.263 55.000 9.12 11.47 0.00 4.26
329 340 2.014857 CAGGGCATCAGTGTCAATGAG 58.985 52.381 9.12 2.82 0.00 2.90
330 341 1.352017 ACAGGGCATCAGTGTCAATGA 59.648 47.619 5.30 5.30 0.00 2.57
331 342 1.471287 CACAGGGCATCAGTGTCAATG 59.529 52.381 0.00 0.00 0.00 2.82
332 343 1.074405 ACACAGGGCATCAGTGTCAAT 59.926 47.619 0.00 0.00 42.36 2.57
333 344 0.473755 ACACAGGGCATCAGTGTCAA 59.526 50.000 0.00 0.00 42.36 3.18
334 345 0.250424 CACACAGGGCATCAGTGTCA 60.250 55.000 4.88 0.00 44.02 3.58
335 346 0.035317 TCACACAGGGCATCAGTGTC 59.965 55.000 4.88 0.00 44.02 3.67
336 347 0.694771 ATCACACAGGGCATCAGTGT 59.305 50.000 0.00 0.00 46.54 3.55
337 348 2.558378 CTATCACACAGGGCATCAGTG 58.442 52.381 0.00 0.00 39.12 3.66
436 447 9.884814 AATAGGACTGTGACCTATAATAAGACT 57.115 33.333 8.11 0.00 46.20 3.24
448 459 5.817816 CACTTCCATTAATAGGACTGTGACC 59.182 44.000 19.99 0.00 39.89 4.02
449 460 5.817816 CCACTTCCATTAATAGGACTGTGAC 59.182 44.000 22.83 0.00 39.89 3.67
450 461 5.724370 TCCACTTCCATTAATAGGACTGTGA 59.276 40.000 22.83 14.68 39.89 3.58
451 462 5.989477 TCCACTTCCATTAATAGGACTGTG 58.011 41.667 18.97 18.97 38.51 3.66
452 463 6.415573 GTTCCACTTCCATTAATAGGACTGT 58.584 40.000 6.23 6.22 34.19 3.55
453 464 5.823045 GGTTCCACTTCCATTAATAGGACTG 59.177 44.000 6.23 5.52 34.19 3.51
454 465 5.491078 TGGTTCCACTTCCATTAATAGGACT 59.509 40.000 6.23 0.00 34.19 3.85
455 466 5.589050 GTGGTTCCACTTCCATTAATAGGAC 59.411 44.000 13.97 0.00 36.09 3.85
456 467 5.251932 TGTGGTTCCACTTCCATTAATAGGA 59.748 40.000 20.48 3.37 37.78 2.94
457 468 5.357032 GTGTGGTTCCACTTCCATTAATAGG 59.643 44.000 20.48 0.00 37.78 2.57
458 469 5.943416 TGTGTGGTTCCACTTCCATTAATAG 59.057 40.000 20.48 0.00 37.78 1.73
459 470 5.882040 TGTGTGGTTCCACTTCCATTAATA 58.118 37.500 20.48 0.00 37.78 0.98
460 471 4.735369 TGTGTGGTTCCACTTCCATTAAT 58.265 39.130 20.48 0.00 37.78 1.40
461 472 4.171878 TGTGTGGTTCCACTTCCATTAA 57.828 40.909 20.48 0.00 37.78 1.40
462 473 3.866703 TGTGTGGTTCCACTTCCATTA 57.133 42.857 20.48 0.00 37.78 1.90
463 474 2.746279 TGTGTGGTTCCACTTCCATT 57.254 45.000 20.48 0.00 37.78 3.16
464 475 2.795329 GATGTGTGGTTCCACTTCCAT 58.205 47.619 20.48 17.94 37.78 3.41
465 476 2.270352 GATGTGTGGTTCCACTTCCA 57.730 50.000 20.48 14.79 37.78 3.53
466 477 1.534729 GGATGTGTGGTTCCACTTCC 58.465 55.000 20.48 18.31 46.20 3.46
467 478 2.154462 CAGGATGTGTGGTTCCACTTC 58.846 52.381 20.48 14.43 38.25 3.01
468 479 1.202927 CCAGGATGTGTGGTTCCACTT 60.203 52.381 20.48 7.69 37.78 3.16
469 480 0.401738 CCAGGATGTGTGGTTCCACT 59.598 55.000 20.48 3.06 37.78 4.00
470 481 0.110486 ACCAGGATGTGTGGTTCCAC 59.890 55.000 14.31 14.31 46.73 4.02
471 482 1.735926 TACCAGGATGTGTGGTTCCA 58.264 50.000 0.00 0.00 46.73 3.53
472 483 2.505819 AGATACCAGGATGTGTGGTTCC 59.494 50.000 0.00 0.00 46.73 3.62
473 484 3.914426 AGATACCAGGATGTGTGGTTC 57.086 47.619 0.00 0.00 46.73 3.62
474 485 4.620723 TCTAGATACCAGGATGTGTGGTT 58.379 43.478 0.00 0.00 46.73 3.67
476 487 4.835056 TCATCTAGATACCAGGATGTGTGG 59.165 45.833 4.54 0.00 41.30 4.17
477 488 5.772169 TCTCATCTAGATACCAGGATGTGTG 59.228 44.000 4.54 0.00 37.44 3.82
478 489 5.958321 TCTCATCTAGATACCAGGATGTGT 58.042 41.667 4.54 0.00 37.44 3.72
479 490 6.718912 TCTTCTCATCTAGATACCAGGATGTG 59.281 42.308 4.54 0.00 37.44 3.21
480 491 6.857848 TCTTCTCATCTAGATACCAGGATGT 58.142 40.000 4.54 0.00 37.44 3.06
481 492 7.232330 TGTTCTTCTCATCTAGATACCAGGATG 59.768 40.741 4.54 0.00 37.49 3.51
482 493 7.301420 TGTTCTTCTCATCTAGATACCAGGAT 58.699 38.462 4.54 0.00 33.05 3.24
483 494 6.673583 TGTTCTTCTCATCTAGATACCAGGA 58.326 40.000 4.54 0.00 33.05 3.86
484 495 6.968263 TGTTCTTCTCATCTAGATACCAGG 57.032 41.667 4.54 0.00 33.05 4.45
485 496 7.950512 ACATGTTCTTCTCATCTAGATACCAG 58.049 38.462 4.54 2.27 33.05 4.00
486 497 7.904558 ACATGTTCTTCTCATCTAGATACCA 57.095 36.000 4.54 0.00 33.05 3.25
487 498 9.853555 CATACATGTTCTTCTCATCTAGATACC 57.146 37.037 2.30 0.00 33.05 2.73
491 502 9.853177 TCTACATACATGTTCTTCTCATCTAGA 57.147 33.333 2.30 0.00 41.97 2.43
497 508 9.899226 CGATATTCTACATACATGTTCTTCTCA 57.101 33.333 2.30 0.00 41.97 3.27
498 509 8.855279 GCGATATTCTACATACATGTTCTTCTC 58.145 37.037 2.30 0.00 41.97 2.87
499 510 8.580720 AGCGATATTCTACATACATGTTCTTCT 58.419 33.333 2.30 0.00 41.97 2.85
500 511 8.749841 AGCGATATTCTACATACATGTTCTTC 57.250 34.615 2.30 0.00 41.97 2.87
502 513 9.627395 GTAAGCGATATTCTACATACATGTTCT 57.373 33.333 2.30 0.00 41.97 3.01
503 514 8.861101 GGTAAGCGATATTCTACATACATGTTC 58.139 37.037 2.30 0.00 41.97 3.18
504 515 8.364894 TGGTAAGCGATATTCTACATACATGTT 58.635 33.333 2.30 0.00 41.97 2.71
505 516 7.892609 TGGTAAGCGATATTCTACATACATGT 58.107 34.615 2.69 2.69 44.48 3.21
506 517 8.811378 CATGGTAAGCGATATTCTACATACATG 58.189 37.037 0.00 0.00 0.00 3.21
507 518 7.492669 GCATGGTAAGCGATATTCTACATACAT 59.507 37.037 0.00 0.00 0.00 2.29
508 519 6.811665 GCATGGTAAGCGATATTCTACATACA 59.188 38.462 0.00 0.00 0.00 2.29
509 520 6.255887 GGCATGGTAAGCGATATTCTACATAC 59.744 42.308 0.00 0.00 0.00 2.39
510 521 6.071051 TGGCATGGTAAGCGATATTCTACATA 60.071 38.462 0.00 0.00 0.00 2.29
511 522 5.178797 GGCATGGTAAGCGATATTCTACAT 58.821 41.667 0.00 0.00 0.00 2.29
512 523 4.039852 TGGCATGGTAAGCGATATTCTACA 59.960 41.667 0.00 0.00 0.00 2.74
513 524 4.566004 TGGCATGGTAAGCGATATTCTAC 58.434 43.478 0.00 0.00 0.00 2.59
514 525 4.882842 TGGCATGGTAAGCGATATTCTA 57.117 40.909 0.00 0.00 0.00 2.10
515 526 3.769739 TGGCATGGTAAGCGATATTCT 57.230 42.857 0.00 0.00 0.00 2.40
516 527 3.753272 ACATGGCATGGTAAGCGATATTC 59.247 43.478 29.49 0.00 33.60 1.75
517 528 3.503363 CACATGGCATGGTAAGCGATATT 59.497 43.478 29.49 2.76 33.60 1.28
518 529 3.076621 CACATGGCATGGTAAGCGATAT 58.923 45.455 29.49 3.29 33.60 1.63
519 530 2.493035 CACATGGCATGGTAAGCGATA 58.507 47.619 29.49 0.00 33.60 2.92
520 531 1.311859 CACATGGCATGGTAAGCGAT 58.688 50.000 29.49 4.79 33.60 4.58
521 532 0.747644 CCACATGGCATGGTAAGCGA 60.748 55.000 29.49 0.00 32.08 4.93
522 533 1.729276 CCACATGGCATGGTAAGCG 59.271 57.895 29.49 11.32 32.08 4.68
528 539 2.580276 GGCAACCACATGGCATGG 59.420 61.111 29.49 18.27 44.66 3.66
529 540 2.182284 CGGCAACCACATGGCATG 59.818 61.111 25.31 25.31 45.50 4.06
530 541 2.283101 ACGGCAACCACATGGCAT 60.283 55.556 0.00 0.00 45.50 4.40
531 542 3.293714 CACGGCAACCACATGGCA 61.294 61.111 0.00 0.00 45.50 4.92
532 543 3.294493 ACACGGCAACCACATGGC 61.294 61.111 0.00 0.00 42.08 4.40
533 544 2.128853 GACACACGGCAACCACATGG 62.129 60.000 0.00 0.00 42.17 3.66
534 545 1.165907 AGACACACGGCAACCACATG 61.166 55.000 0.00 0.00 0.00 3.21
535 546 0.465460 AAGACACACGGCAACCACAT 60.465 50.000 0.00 0.00 0.00 3.21
536 547 0.178301 TAAGACACACGGCAACCACA 59.822 50.000 0.00 0.00 0.00 4.17
537 548 0.865769 CTAAGACACACGGCAACCAC 59.134 55.000 0.00 0.00 0.00 4.16
538 549 0.753867 TCTAAGACACACGGCAACCA 59.246 50.000 0.00 0.00 0.00 3.67
539 550 2.094762 ATCTAAGACACACGGCAACC 57.905 50.000 0.00 0.00 0.00 3.77
540 551 3.746492 AGAAATCTAAGACACACGGCAAC 59.254 43.478 0.00 0.00 0.00 4.17
541 552 4.002906 AGAAATCTAAGACACACGGCAA 57.997 40.909 0.00 0.00 0.00 4.52
542 553 3.678056 AGAAATCTAAGACACACGGCA 57.322 42.857 0.00 0.00 0.00 5.69
543 554 5.348986 TCATAGAAATCTAAGACACACGGC 58.651 41.667 0.00 0.00 31.39 5.68
544 555 5.460419 GCTCATAGAAATCTAAGACACACGG 59.540 44.000 0.00 0.00 31.39 4.94
545 556 6.036470 TGCTCATAGAAATCTAAGACACACG 58.964 40.000 0.00 0.00 31.39 4.49
546 557 9.534565 TTATGCTCATAGAAATCTAAGACACAC 57.465 33.333 0.00 0.00 31.39 3.82
547 558 9.755804 CTTATGCTCATAGAAATCTAAGACACA 57.244 33.333 0.00 0.00 31.39 3.72
548 559 9.973450 TCTTATGCTCATAGAAATCTAAGACAC 57.027 33.333 0.00 0.00 31.39 3.67
549 560 9.973450 GTCTTATGCTCATAGAAATCTAAGACA 57.027 33.333 12.01 6.86 41.35 3.41
550 561 9.973450 TGTCTTATGCTCATAGAAATCTAAGAC 57.027 33.333 10.61 10.61 41.75 3.01
571 582 8.853126 CCACCATTGATGTGATTTATATGTCTT 58.147 33.333 0.00 0.00 0.00 3.01
572 583 8.000709 ACCACCATTGATGTGATTTATATGTCT 58.999 33.333 0.00 0.00 0.00 3.41
573 584 8.169977 ACCACCATTGATGTGATTTATATGTC 57.830 34.615 0.00 0.00 0.00 3.06
574 585 9.288576 CTACCACCATTGATGTGATTTATATGT 57.711 33.333 0.00 0.00 0.00 2.29
575 586 8.239314 GCTACCACCATTGATGTGATTTATATG 58.761 37.037 0.00 0.00 0.00 1.78
576 587 7.394359 GGCTACCACCATTGATGTGATTTATAT 59.606 37.037 0.00 0.00 0.00 0.86
577 588 6.714810 GGCTACCACCATTGATGTGATTTATA 59.285 38.462 0.00 0.00 0.00 0.98
578 589 5.536161 GGCTACCACCATTGATGTGATTTAT 59.464 40.000 0.00 0.00 0.00 1.40
579 590 4.887071 GGCTACCACCATTGATGTGATTTA 59.113 41.667 0.00 0.00 0.00 1.40
580 591 3.701040 GGCTACCACCATTGATGTGATTT 59.299 43.478 0.00 0.00 0.00 2.17
581 592 3.290710 GGCTACCACCATTGATGTGATT 58.709 45.455 0.00 0.00 0.00 2.57
582 593 2.241941 TGGCTACCACCATTGATGTGAT 59.758 45.455 0.00 0.00 33.75 3.06
583 594 1.632920 TGGCTACCACCATTGATGTGA 59.367 47.619 0.00 0.00 33.75 3.58
584 595 2.019249 CTGGCTACCACCATTGATGTG 58.981 52.381 0.00 0.00 39.54 3.21
585 596 1.635487 ACTGGCTACCACCATTGATGT 59.365 47.619 0.00 0.00 39.54 3.06
586 597 2.092753 AGACTGGCTACCACCATTGATG 60.093 50.000 0.00 0.00 39.54 3.07
587 598 2.200081 AGACTGGCTACCACCATTGAT 58.800 47.619 0.00 0.00 39.54 2.57
588 599 1.656587 AGACTGGCTACCACCATTGA 58.343 50.000 0.00 0.00 39.54 2.57
589 600 2.359900 GAAGACTGGCTACCACCATTG 58.640 52.381 0.00 0.00 39.54 2.82
590 601 1.066143 CGAAGACTGGCTACCACCATT 60.066 52.381 0.00 0.00 39.54 3.16
591 602 0.537188 CGAAGACTGGCTACCACCAT 59.463 55.000 0.00 0.00 39.54 3.55
592 603 1.541310 CCGAAGACTGGCTACCACCA 61.541 60.000 0.00 0.00 38.29 4.17
593 604 1.218316 CCGAAGACTGGCTACCACC 59.782 63.158 0.00 0.00 0.00 4.61
594 605 0.108756 GACCGAAGACTGGCTACCAC 60.109 60.000 0.00 0.00 0.00 4.16
595 606 1.592400 CGACCGAAGACTGGCTACCA 61.592 60.000 0.00 0.00 0.00 3.25
596 607 1.139095 CGACCGAAGACTGGCTACC 59.861 63.158 0.00 0.00 0.00 3.18
597 608 0.179169 GTCGACCGAAGACTGGCTAC 60.179 60.000 3.51 0.00 35.84 3.58
598 609 1.310933 GGTCGACCGAAGACTGGCTA 61.311 60.000 20.85 0.00 38.58 3.93
599 610 2.637383 GGTCGACCGAAGACTGGCT 61.637 63.158 20.85 0.00 38.58 4.75
600 611 2.126031 GGTCGACCGAAGACTGGC 60.126 66.667 20.85 0.00 38.58 4.85
610 621 1.372623 GACAAGTCACCGGTCGACC 60.373 63.158 25.28 25.28 33.70 4.79
611 622 0.031721 AAGACAAGTCACCGGTCGAC 59.968 55.000 22.14 22.14 36.68 4.20
612 623 0.313043 GAAGACAAGTCACCGGTCGA 59.687 55.000 2.59 2.87 36.68 4.20
613 624 0.666577 GGAAGACAAGTCACCGGTCG 60.667 60.000 2.59 0.00 36.68 4.79
614 625 0.666577 CGGAAGACAAGTCACCGGTC 60.667 60.000 21.86 0.00 42.94 4.79
615 626 1.111116 TCGGAAGACAAGTCACCGGT 61.111 55.000 25.79 0.00 44.91 5.28
616 627 0.032952 TTCGGAAGACAAGTCACCGG 59.967 55.000 25.79 0.00 44.91 5.28
617 628 1.993370 GATTCGGAAGACAAGTCACCG 59.007 52.381 22.86 22.86 45.57 4.94
618 629 2.289444 TGGATTCGGAAGACAAGTCACC 60.289 50.000 2.72 4.94 41.84 4.02
619 630 3.040147 TGGATTCGGAAGACAAGTCAC 57.960 47.619 2.72 0.00 41.84 3.67
620 631 3.557054 CCTTGGATTCGGAAGACAAGTCA 60.557 47.826 23.75 4.41 39.02 3.41
621 632 3.003480 CCTTGGATTCGGAAGACAAGTC 58.997 50.000 23.75 7.14 39.02 3.01
622 633 2.637872 TCCTTGGATTCGGAAGACAAGT 59.362 45.455 23.75 0.00 39.02 3.16
623 634 3.003480 GTCCTTGGATTCGGAAGACAAG 58.997 50.000 21.09 21.09 41.84 3.16
624 635 2.370519 TGTCCTTGGATTCGGAAGACAA 59.629 45.455 5.96 7.46 41.84 3.18
625 636 1.974957 TGTCCTTGGATTCGGAAGACA 59.025 47.619 4.67 4.67 41.84 3.41
626 637 2.233922 TCTGTCCTTGGATTCGGAAGAC 59.766 50.000 0.00 0.00 41.84 3.01
627 638 2.536066 TCTGTCCTTGGATTCGGAAGA 58.464 47.619 0.00 0.00 39.20 2.87
628 639 3.462021 GATCTGTCCTTGGATTCGGAAG 58.538 50.000 0.00 0.00 0.00 3.46
629 640 2.170607 GGATCTGTCCTTGGATTCGGAA 59.829 50.000 0.00 0.00 41.60 4.30
630 641 1.762957 GGATCTGTCCTTGGATTCGGA 59.237 52.381 0.00 0.00 41.60 4.55
631 642 1.486310 TGGATCTGTCCTTGGATTCGG 59.514 52.381 0.00 0.00 45.32 4.30
632 643 2.988010 TGGATCTGTCCTTGGATTCG 57.012 50.000 0.00 0.00 45.32 3.34
633 644 7.911651 TCTATATTGGATCTGTCCTTGGATTC 58.088 38.462 0.00 0.00 45.32 2.52
634 645 7.878621 TCTATATTGGATCTGTCCTTGGATT 57.121 36.000 0.00 0.00 45.32 3.01
635 646 7.293299 TGTTCTATATTGGATCTGTCCTTGGAT 59.707 37.037 0.00 0.00 45.32 3.41
636 647 6.615316 TGTTCTATATTGGATCTGTCCTTGGA 59.385 38.462 0.00 0.00 45.32 3.53
637 648 6.830912 TGTTCTATATTGGATCTGTCCTTGG 58.169 40.000 0.00 0.00 45.32 3.61
638 649 8.206867 TCTTGTTCTATATTGGATCTGTCCTTG 58.793 37.037 0.00 0.00 45.32 3.61
639 650 8.324191 TCTTGTTCTATATTGGATCTGTCCTT 57.676 34.615 0.00 0.00 45.32 3.36
640 651 7.921041 TCTTGTTCTATATTGGATCTGTCCT 57.079 36.000 0.00 0.00 45.32 3.85
641 652 7.821846 GGATCTTGTTCTATATTGGATCTGTCC 59.178 40.741 0.00 0.00 45.31 4.02
642 653 8.370940 TGGATCTTGTTCTATATTGGATCTGTC 58.629 37.037 0.00 0.00 0.00 3.51
643 654 8.267620 TGGATCTTGTTCTATATTGGATCTGT 57.732 34.615 0.00 0.00 0.00 3.41
644 655 8.591940 TCTGGATCTTGTTCTATATTGGATCTG 58.408 37.037 0.00 0.00 0.00 2.90
645 656 8.592809 GTCTGGATCTTGTTCTATATTGGATCT 58.407 37.037 0.00 0.00 0.00 2.75
646 657 7.821846 GGTCTGGATCTTGTTCTATATTGGATC 59.178 40.741 0.00 0.00 0.00 3.36
647 658 7.526192 CGGTCTGGATCTTGTTCTATATTGGAT 60.526 40.741 0.00 0.00 0.00 3.41
648 659 6.239317 CGGTCTGGATCTTGTTCTATATTGGA 60.239 42.308 0.00 0.00 0.00 3.53
649 660 5.928839 CGGTCTGGATCTTGTTCTATATTGG 59.071 44.000 0.00 0.00 0.00 3.16
650 661 5.928839 CCGGTCTGGATCTTGTTCTATATTG 59.071 44.000 0.00 0.00 42.00 1.90
651 662 5.602978 ACCGGTCTGGATCTTGTTCTATATT 59.397 40.000 0.00 0.00 42.00 1.28
652 663 5.148502 ACCGGTCTGGATCTTGTTCTATAT 58.851 41.667 0.00 0.00 42.00 0.86
653 664 4.543689 ACCGGTCTGGATCTTGTTCTATA 58.456 43.478 0.00 0.00 42.00 1.31
654 665 3.375699 ACCGGTCTGGATCTTGTTCTAT 58.624 45.455 0.00 0.00 42.00 1.98
655 666 2.758979 GACCGGTCTGGATCTTGTTCTA 59.241 50.000 27.64 0.00 42.00 2.10
656 667 1.550976 GACCGGTCTGGATCTTGTTCT 59.449 52.381 27.64 0.00 42.00 3.01
657 668 1.275291 TGACCGGTCTGGATCTTGTTC 59.725 52.381 33.39 5.11 42.00 3.18
658 669 1.002087 GTGACCGGTCTGGATCTTGTT 59.998 52.381 33.39 0.00 42.00 2.83
659 670 0.608640 GTGACCGGTCTGGATCTTGT 59.391 55.000 33.39 0.00 42.00 3.16
660 671 0.608130 TGTGACCGGTCTGGATCTTG 59.392 55.000 33.39 0.00 42.00 3.02
661 672 0.898320 CTGTGACCGGTCTGGATCTT 59.102 55.000 33.39 0.00 42.00 2.40
662 673 0.251832 ACTGTGACCGGTCTGGATCT 60.252 55.000 33.39 9.86 42.00 2.75
663 674 0.173708 GACTGTGACCGGTCTGGATC 59.826 60.000 33.39 21.47 42.66 3.36
664 675 1.258445 GGACTGTGACCGGTCTGGAT 61.258 60.000 33.39 17.66 44.88 3.41
665 676 1.906824 GGACTGTGACCGGTCTGGA 60.907 63.158 33.39 16.83 44.88 3.86
666 677 2.657237 GGACTGTGACCGGTCTGG 59.343 66.667 33.39 23.76 44.88 3.86
667 678 1.544825 ATGGGACTGTGACCGGTCTG 61.545 60.000 33.39 24.20 44.88 3.51
668 679 1.229209 ATGGGACTGTGACCGGTCT 60.229 57.895 33.39 15.17 44.88 3.85
669 680 1.218316 GATGGGACTGTGACCGGTC 59.782 63.158 28.17 28.17 44.80 4.79
670 681 1.535444 TGATGGGACTGTGACCGGT 60.535 57.895 6.92 6.92 0.00 5.28
671 682 1.219124 CTGATGGGACTGTGACCGG 59.781 63.158 0.00 0.00 0.00 5.28
672 683 0.390340 CACTGATGGGACTGTGACCG 60.390 60.000 0.00 0.00 40.44 4.79
719 734 0.665298 GGAGGATTTTCTGCGCATCC 59.335 55.000 17.39 17.39 37.36 3.51
726 741 9.087871 TCTCATCTAGAATAGGAGGATTTTCTG 57.912 37.037 0.00 0.00 39.78 3.02
731 746 9.088987 GTCTTTCTCATCTAGAATAGGAGGATT 57.911 37.037 0.00 0.00 43.75 3.01
737 752 8.421249 AGGATGTCTTTCTCATCTAGAATAGG 57.579 38.462 0.00 0.00 43.75 2.57
741 756 5.888724 ACGAGGATGTCTTTCTCATCTAGAA 59.111 40.000 0.00 0.00 42.62 2.10
783 904 2.029073 CGGCAACCACGAGACACT 59.971 61.111 0.00 0.00 0.00 3.55
787 908 2.028484 GACACGGCAACCACGAGA 59.972 61.111 0.00 0.00 34.93 4.04
790 911 0.876777 TAACAGACACGGCAACCACG 60.877 55.000 0.00 0.00 37.36 4.94
792 913 0.250124 CCTAACAGACACGGCAACCA 60.250 55.000 0.00 0.00 0.00 3.67
804 925 5.412594 TCTTATGCTTGCAGAAACCTAACAG 59.587 40.000 4.26 0.00 0.00 3.16
852 973 1.374758 GTGGACGGAAGACTGGCTG 60.375 63.158 0.00 0.00 0.00 4.85
874 995 0.679505 TGGGTTCAGAGGACAAGTCG 59.320 55.000 0.00 0.00 0.00 4.18
934 1055 4.854399 TGCAAGTATGTTTGTGTGCTTAC 58.146 39.130 0.00 0.00 33.19 2.34
941 1062 7.910162 GGTATGAAGTATGCAAGTATGTTTGTG 59.090 37.037 0.00 0.00 0.00 3.33
942 1063 7.067008 GGGTATGAAGTATGCAAGTATGTTTGT 59.933 37.037 0.00 0.00 0.00 2.83
945 1066 6.658849 TGGGTATGAAGTATGCAAGTATGTT 58.341 36.000 0.00 0.00 0.00 2.71
951 1072 6.016276 GGGTATTTGGGTATGAAGTATGCAAG 60.016 42.308 0.00 0.00 0.00 4.01
952 1073 5.830991 GGGTATTTGGGTATGAAGTATGCAA 59.169 40.000 0.00 0.00 0.00 4.08
953 1074 5.103898 TGGGTATTTGGGTATGAAGTATGCA 60.104 40.000 0.00 0.00 0.00 3.96
954 1075 5.381757 TGGGTATTTGGGTATGAAGTATGC 58.618 41.667 0.00 0.00 0.00 3.14
955 1076 9.231297 CTTATGGGTATTTGGGTATGAAGTATG 57.769 37.037 0.00 0.00 0.00 2.39
956 1077 9.177927 TCTTATGGGTATTTGGGTATGAAGTAT 57.822 33.333 0.00 0.00 0.00 2.12
957 1078 8.570038 TCTTATGGGTATTTGGGTATGAAGTA 57.430 34.615 0.00 0.00 0.00 2.24
958 1079 7.460214 TCTTATGGGTATTTGGGTATGAAGT 57.540 36.000 0.00 0.00 0.00 3.01
994 1115 2.305635 TCCTGAGCTTAGACATTGCCAA 59.694 45.455 7.16 0.00 0.00 4.52
997 1118 4.450053 AGATTCCTGAGCTTAGACATTGC 58.550 43.478 7.16 0.00 0.00 3.56
998 1119 5.879223 ACAAGATTCCTGAGCTTAGACATTG 59.121 40.000 7.16 7.11 0.00 2.82
1006 1128 3.620966 GCTGGTACAAGATTCCTGAGCTT 60.621 47.826 0.00 0.00 38.70 3.74
1016 1138 1.705186 AGGTTGTGGCTGGTACAAGAT 59.295 47.619 0.00 0.00 38.58 2.40
1033 1203 1.997874 GTGCATGGAGGGGAGAGGT 60.998 63.158 0.00 0.00 0.00 3.85
1102 1272 0.616111 TCCCAGAGGCTCTCCTTGAC 60.616 60.000 15.60 0.00 44.46 3.18
1428 1598 2.562296 AGCTTGGAGAGGTTCCCAATA 58.438 47.619 0.00 0.00 46.19 1.90
1452 1622 3.526899 TGGGAGTTTGAGATCCAGGTAA 58.473 45.455 0.00 0.00 37.33 2.85
1584 1760 6.358974 AGGTTTGGAAGGATGTTAATTTGG 57.641 37.500 0.00 0.00 0.00 3.28
1620 1796 3.708451 TCTGAGGCCAGTATGTTGTAGA 58.292 45.455 5.01 0.00 41.16 2.59
1629 1805 0.321671 GTGTGCTTCTGAGGCCAGTA 59.678 55.000 5.01 0.00 41.16 2.74
1638 1814 1.072965 AGGAAAGGAGGTGTGCTTCTG 59.927 52.381 0.00 0.00 32.16 3.02
1648 1824 4.240881 TGGATTGATCAAGGAAAGGAGG 57.759 45.455 14.54 0.00 0.00 4.30
1649 1825 6.127793 AGATTGGATTGATCAAGGAAAGGAG 58.872 40.000 14.54 0.00 0.00 3.69
1651 1827 6.786967 AAGATTGGATTGATCAAGGAAAGG 57.213 37.500 14.54 0.00 0.00 3.11
1661 1837 4.156455 AGTGCCGTAAGATTGGATTGAT 57.844 40.909 0.00 0.00 43.02 2.57
1774 1950 3.817647 GGGCCATAGAATCTACAAGCTTG 59.182 47.826 24.84 24.84 0.00 4.01
1785 1961 2.915869 TCCGGAATAGGGCCATAGAAT 58.084 47.619 0.00 0.00 0.00 2.40
1835 2011 9.056005 TGAGATCATTACCCGAGAAATAAATTG 57.944 33.333 0.00 0.00 0.00 2.32
1837 2013 9.224267 CATGAGATCATTACCCGAGAAATAAAT 57.776 33.333 0.00 0.00 33.61 1.40
1846 2022 3.069586 GTGGACATGAGATCATTACCCGA 59.930 47.826 0.00 0.00 33.61 5.14
1847 2023 3.393800 GTGGACATGAGATCATTACCCG 58.606 50.000 0.00 0.00 33.61 5.28
1930 2108 1.833630 TGTGATGTCCCCTGAGATGTC 59.166 52.381 0.00 0.00 0.00 3.06
1934 2112 1.077828 ACTCTGTGATGTCCCCTGAGA 59.922 52.381 0.00 0.00 0.00 3.27
2004 2182 6.346096 GCCACTTACCATACTATCAGTCAAA 58.654 40.000 0.00 0.00 0.00 2.69
2008 2186 3.646637 GGGCCACTTACCATACTATCAGT 59.353 47.826 4.39 0.00 0.00 3.41
2015 2193 1.981256 CATGGGGCCACTTACCATAC 58.019 55.000 6.53 0.00 42.85 2.39
2042 2220 1.073284 GGTTTGTAAGAGGTCCTGCCA 59.927 52.381 0.00 0.00 40.61 4.92
2044 2222 2.038557 TCAGGTTTGTAAGAGGTCCTGC 59.961 50.000 0.00 0.00 41.24 4.85
2110 2288 3.133691 CGGTGAGTGACCATATCCATTG 58.866 50.000 0.00 0.00 46.55 2.82
2159 2337 2.601763 GTGACTACGCCATTTAGTTCGG 59.398 50.000 0.00 0.00 29.58 4.30
2197 2375 7.148239 ACCTAAGATCTTCAAATTTGTAAGGCG 60.148 37.037 12.24 0.00 0.00 5.52
2242 2420 1.475403 TCCGGACTGACCTTGATCTC 58.525 55.000 0.00 0.00 36.31 2.75
2260 2438 4.089361 AGTTTGAATGGAGGAACCCAATC 58.911 43.478 0.00 0.00 40.04 2.67
2285 2463 2.841442 ACCCTGTAAGACAACTGCTC 57.159 50.000 0.00 0.00 34.07 4.26
2293 2471 1.897560 AGCTGCAAACCCTGTAAGAC 58.102 50.000 1.02 0.00 34.07 3.01
2299 2477 2.048603 GCCCTAGCTGCAAACCCTG 61.049 63.158 1.02 0.00 35.50 4.45
2322 2500 3.817647 GTGATCTAAGCCATGATGGGAAC 59.182 47.826 14.26 1.42 38.19 3.62
2328 2506 5.363562 TTGTCTGTGATCTAAGCCATGAT 57.636 39.130 0.00 0.00 0.00 2.45
2354 2532 5.818857 GCATTTGCAATCATAAGGGTTTCAT 59.181 36.000 0.00 0.00 41.59 2.57
2446 2624 7.289084 TGGTAGTGTGCCAGTTATCTGATTATA 59.711 37.037 2.20 0.00 43.76 0.98
2513 2691 1.165270 ACCGGTAAATCTGTTGCTGC 58.835 50.000 4.49 0.00 0.00 5.25
2516 2694 4.957759 ATTGTACCGGTAAATCTGTTGC 57.042 40.909 17.78 0.58 0.00 4.17
2616 2794 1.448922 TAACCTGCAACAACGGTGCC 61.449 55.000 0.00 0.00 0.00 5.01
2640 2818 9.442047 GGACCTGATATTGAATTGTTATAGAGG 57.558 37.037 0.00 0.00 0.00 3.69
2643 2821 9.658799 ATCGGACCTGATATTGAATTGTTATAG 57.341 33.333 0.00 0.00 0.00 1.31
2667 2845 6.017605 ACAACGAGCATAATGAAGATGGAATC 60.018 38.462 0.00 0.00 46.04 2.52
2688 2866 5.458779 GTCTACAAAAGCCAATTGTGACAAC 59.541 40.000 0.00 0.00 40.95 3.32
2697 2875 5.440610 CCTGATAGGTCTACAAAAGCCAAT 58.559 41.667 0.00 0.00 0.00 3.16
2704 2882 5.570844 GCTTGTTCCCTGATAGGTCTACAAA 60.571 44.000 0.00 0.00 31.92 2.83
2706 2884 3.451178 GCTTGTTCCCTGATAGGTCTACA 59.549 47.826 0.00 0.00 31.93 2.74
2707 2885 3.707102 AGCTTGTTCCCTGATAGGTCTAC 59.293 47.826 0.00 0.00 31.93 2.59
2814 2999 2.977808 ACTCTTGGGAACTCTCCTGAA 58.022 47.619 0.00 0.00 42.05 3.02
2877 3062 4.938226 GGTAGGTCTCCAGAGAATTTGTTG 59.062 45.833 0.00 0.00 39.48 3.33
2889 3074 0.854039 TCCAGAGGGGTAGGTCTCCA 60.854 60.000 0.00 0.00 39.70 3.86
2902 3087 3.388350 GGTAACTTCACCCCTATCCAGAG 59.612 52.174 0.00 0.00 31.91 3.35
2910 3095 2.315720 AGTACGGTAACTTCACCCCT 57.684 50.000 0.00 0.00 34.90 4.79
2943 3128 5.331902 CCAGAAAACATATTGTACCGCAAG 58.668 41.667 0.00 0.00 40.86 4.01
2944 3129 4.380023 GCCAGAAAACATATTGTACCGCAA 60.380 41.667 0.00 0.00 41.89 4.85
2991 3176 9.732130 AGATCTAAAAACTGTAGCTCTTGAAAT 57.268 29.630 0.00 0.00 0.00 2.17
2992 3177 9.561069 AAGATCTAAAAACTGTAGCTCTTGAAA 57.439 29.630 0.00 0.00 34.40 2.69
3106 3374 6.072286 CCTTGTCTATGATGAATGGCATTACC 60.072 42.308 13.65 2.09 37.34 2.85
3107 3375 6.072286 CCCTTGTCTATGATGAATGGCATTAC 60.072 42.308 13.65 5.65 37.34 1.89
3117 3385 5.912149 AAATAGGCCCTTGTCTATGATGA 57.088 39.130 0.00 0.00 38.45 2.92
3118 3386 5.829924 ACAAAATAGGCCCTTGTCTATGATG 59.170 40.000 0.00 0.00 38.45 3.07
3191 3459 6.068670 AGTTGTTGCCCTTTAGTAAGAACAT 58.931 36.000 5.48 0.00 37.84 2.71
3216 3484 6.770785 TGTATAGGATTTCAGGGGAAAAATCG 59.229 38.462 0.00 0.00 45.52 3.34
3219 3487 7.418378 ACATGTATAGGATTTCAGGGGAAAAA 58.582 34.615 0.00 0.00 45.52 1.94
3235 3503 8.210525 CGACAAATCAAGAATCGACATGTATAG 58.789 37.037 0.00 0.00 34.77 1.31
3236 3504 7.704899 ACGACAAATCAAGAATCGACATGTATA 59.295 33.333 0.00 0.00 36.64 1.47
3244 3512 3.063485 TGCACGACAAATCAAGAATCGA 58.937 40.909 0.00 0.00 36.64 3.59
3261 3529 2.979813 CGCTCCAGTTAAATTGTTGCAC 59.020 45.455 0.00 0.00 0.00 4.57
3281 3549 3.070018 GCACCAATATCTTGAGGGATCG 58.930 50.000 0.00 0.00 34.04 3.69
3370 3638 2.275134 TCCAATTGCTCAAGCTCACA 57.725 45.000 0.00 0.00 42.66 3.58
3378 3646 3.614092 GTCCAGAGATTCCAATTGCTCA 58.386 45.455 11.76 0.00 0.00 4.26
3379 3647 2.948315 GGTCCAGAGATTCCAATTGCTC 59.052 50.000 0.00 1.25 0.00 4.26
3396 3664 5.415701 TGAAAGCTCATTATTTGACAGGTCC 59.584 40.000 0.00 0.00 0.00 4.46
3408 3676 5.545658 GGATTTCGTGTGAAAGCTCATTA 57.454 39.130 6.05 0.00 46.91 1.90
3422 3690 2.749621 GTCATGCTTGAAGGGATTTCGT 59.250 45.455 3.51 0.00 38.71 3.85
3480 3748 6.194967 TGGTATCATTCCTGACAGAGAGTTA 58.805 40.000 3.32 0.00 33.22 2.24
3484 3752 5.026121 AGTTGGTATCATTCCTGACAGAGA 58.974 41.667 3.32 0.00 33.22 3.10
3510 3778 8.887036 ATGCGTCATAAGTATGAAACTGATTA 57.113 30.769 2.59 0.00 43.65 1.75
3519 3787 3.568430 AGACGGATGCGTCATAAGTATGA 59.432 43.478 35.92 0.00 40.96 2.15
3527 3795 2.473816 CAATGTAGACGGATGCGTCAT 58.526 47.619 35.92 24.20 40.96 3.06
3537 3805 2.289444 ACCAGTGTTCCCAATGTAGACG 60.289 50.000 0.00 0.00 34.92 4.18
3539 3807 4.447138 AAACCAGTGTTCCCAATGTAGA 57.553 40.909 0.00 0.00 34.92 2.59
3579 3847 6.542821 TGAACTATTTCCTGGACAGATGTTT 58.457 36.000 0.00 0.00 0.00 2.83
3584 3852 5.566826 CGACTTGAACTATTTCCTGGACAGA 60.567 44.000 0.00 0.00 0.00 3.41
3623 3891 3.237746 TCCTCAGATCCATCTCCATGAC 58.762 50.000 0.00 0.00 34.22 3.06
3639 3907 6.399013 ACCAAGGTAAAGGGATATATCCTCA 58.601 40.000 27.21 10.41 46.35 3.86
3726 3994 9.520204 ACAAATGTGAAATAAACAGTTCTTCAG 57.480 29.630 0.00 0.00 33.89 3.02
3746 4014 0.245539 CTGCAGCCCTTCCACAAATG 59.754 55.000 0.00 0.00 0.00 2.32
3767 4035 3.091545 ACCACTGCCACATAAATCTTGG 58.908 45.455 0.00 0.00 0.00 3.61
3931 4204 8.986477 ACTTGCCAATTCATAAAATACACTTC 57.014 30.769 0.00 0.00 0.00 3.01
3954 4227 0.240411 GAGAACACCGCAGTCGTACT 59.760 55.000 0.00 0.00 0.00 2.73
3965 4238 5.807011 ACGTTTATTACATACGGAGAACACC 59.193 40.000 0.00 0.00 39.45 4.16
3987 4260 8.333186 GGCAGAAGGTTTATAAATAGTGTAACG 58.667 37.037 0.31 0.00 45.86 3.18
3992 4265 8.225603 ACATGGCAGAAGGTTTATAAATAGTG 57.774 34.615 0.31 0.00 0.00 2.74
4047 4324 4.038271 ACAGGGCAAGAATCAATTCTCA 57.962 40.909 5.75 0.00 45.83 3.27
4063 4340 4.602340 ACACTTCAACAGTACTACAGGG 57.398 45.455 0.00 0.00 32.76 4.45
4122 4399 7.064134 TCGGTTTGCTTACTTAACATGTATCTG 59.936 37.037 0.00 0.00 0.00 2.90
4123 4400 7.101054 TCGGTTTGCTTACTTAACATGTATCT 58.899 34.615 0.00 0.00 0.00 1.98
4129 4406 6.811253 TGATTCGGTTTGCTTACTTAACAT 57.189 33.333 0.00 0.00 0.00 2.71
4134 4411 6.575162 AGAATTGATTCGGTTTGCTTACTT 57.425 33.333 0.00 0.00 41.56 2.24
4139 4416 5.163713 GCTTCTAGAATTGATTCGGTTTGCT 60.164 40.000 5.44 0.00 41.56 3.91
4145 4422 7.664082 ATGTATGCTTCTAGAATTGATTCGG 57.336 36.000 5.44 0.00 41.56 4.30
4147 4424 8.940952 GGGTATGTATGCTTCTAGAATTGATTC 58.059 37.037 5.44 0.00 37.06 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.