Multiple sequence alignment - TraesCS7D01G050600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G050600 chr7D 100.000 4871 0 0 1 4871 26385200 26380330 0.000000e+00 8996.0
1 TraesCS7D01G050600 chr7D 88.069 3227 349 26 1072 4273 26449659 26446444 0.000000e+00 3794.0
2 TraesCS7D01G050600 chr7D 91.185 363 28 3 231 591 474410093 474409733 1.580000e-134 490.0
3 TraesCS7D01G050600 chr7D 83.673 343 36 11 591 915 16370638 16370298 6.130000e-79 305.0
4 TraesCS7D01G050600 chr7D 81.921 354 42 12 692 1026 26450006 26449656 3.710000e-71 279.0
5 TraesCS7D01G050600 chr7D 81.910 199 27 3 746 939 26450202 26450008 5.050000e-35 159.0
6 TraesCS7D01G050600 chr7D 100.000 41 0 0 620 660 26450344 26450304 5.230000e-10 76.8
7 TraesCS7D01G050600 chr7D 97.222 36 1 0 591 626 26450390 26450355 1.460000e-05 62.1
8 TraesCS7D01G050600 chr7A 97.382 3629 76 5 796 4417 15276513 15272897 0.000000e+00 6157.0
9 TraesCS7D01G050600 chr7A 88.417 2875 317 11 1153 4017 15254393 15251525 0.000000e+00 3450.0
10 TraesCS7D01G050600 chr7A 92.056 428 10 2 4445 4871 15272899 15272495 9.090000e-162 580.0
11 TraesCS7D01G050600 chr7A 90.761 368 26 5 228 593 637871020 637871381 7.330000e-133 484.0
12 TraesCS7D01G050600 chr7A 90.489 368 31 2 229 594 704292148 704291783 2.640000e-132 483.0
13 TraesCS7D01G050600 chr7A 97.835 231 5 0 1 231 15277039 15276809 2.730000e-107 399.0
14 TraesCS7D01G050600 chr7A 97.059 170 5 0 591 760 15276811 15276642 2.220000e-73 287.0
15 TraesCS7D01G050600 chr4A 88.564 3349 339 29 591 3902 718464730 718468071 0.000000e+00 4023.0
16 TraesCS7D01G050600 chr4A 88.045 3346 354 27 591 3902 718898449 718895116 0.000000e+00 3921.0
17 TraesCS7D01G050600 chr4A 89.516 496 52 0 2624 3119 718249899 718250394 3.200000e-176 628.0
18 TraesCS7D01G050600 chr4A 90.566 371 29 4 229 597 741186152 741186518 2.040000e-133 486.0
19 TraesCS7D01G050600 chr4A 88.387 310 36 0 2614 2923 718250400 718250709 1.660000e-99 374.0
20 TraesCS7D01G050600 chr4A 83.045 289 46 3 2919 3205 718256367 718256654 4.840000e-65 259.0
21 TraesCS7D01G050600 chr4A 91.406 128 10 1 1 128 718458461 718458587 1.800000e-39 174.0
22 TraesCS7D01G050600 chr4A 84.211 190 19 3 42 231 718898625 718898447 1.800000e-39 174.0
23 TraesCS7D01G050600 chr3D 79.210 2809 537 40 1125 3907 579371927 579369140 0.000000e+00 1908.0
24 TraesCS7D01G050600 chr2D 92.371 367 25 2 229 593 151981040 151981405 2.010000e-143 520.0
25 TraesCS7D01G050600 chr6B 92.287 363 25 2 231 591 8056605 8056244 3.360000e-141 512.0
26 TraesCS7D01G050600 chr1A 91.507 365 29 1 229 591 419036413 419036049 7.280000e-138 501.0
27 TraesCS7D01G050600 chr6A 91.033 368 28 3 229 594 578884561 578884925 4.380000e-135 492.0
28 TraesCS7D01G050600 chr5B 90.217 368 33 2 229 593 554517584 554517951 1.230000e-130 477.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G050600 chr7D 26380330 26385200 4870 True 8996.00 8996 100.0000 1 4871 1 chr7D.!!$R2 4870
1 TraesCS7D01G050600 chr7D 26446444 26450390 3946 True 874.18 3794 89.8244 591 4273 5 chr7D.!!$R4 3682
2 TraesCS7D01G050600 chr7A 15251525 15254393 2868 True 3450.00 3450 88.4170 1153 4017 1 chr7A.!!$R1 2864
3 TraesCS7D01G050600 chr7A 15272495 15277039 4544 True 1855.75 6157 96.0830 1 4871 4 chr7A.!!$R3 4870
4 TraesCS7D01G050600 chr4A 718464730 718468071 3341 False 4023.00 4023 88.5640 591 3902 1 chr4A.!!$F3 3311
5 TraesCS7D01G050600 chr4A 718895116 718898625 3509 True 2047.50 3921 86.1280 42 3902 2 chr4A.!!$R1 3860
6 TraesCS7D01G050600 chr4A 718249899 718250709 810 False 501.00 628 88.9515 2614 3119 2 chr4A.!!$F5 505
7 TraesCS7D01G050600 chr3D 579369140 579371927 2787 True 1908.00 1908 79.2100 1125 3907 1 chr3D.!!$R1 2782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 491 0.026933 TGTGCATATTTTACGGCGCG 59.973 50.000 6.90 0.00 39.50 6.86 F
492 493 0.026933 TGCATATTTTACGGCGCGTG 59.973 50.000 6.90 2.96 41.39 5.34 F
493 494 0.027063 GCATATTTTACGGCGCGTGT 59.973 50.000 6.90 9.85 41.39 4.49 F
515 516 0.367210 GAGCAAACGTCTTCTAGCGC 59.633 55.000 0.00 0.00 0.00 5.92 F
518 519 0.389948 CAAACGTCTTCTAGCGCCCT 60.390 55.000 2.29 0.00 0.00 5.19 F
548 549 0.464735 ACTTGCACGCTGTAAACCCA 60.465 50.000 0.00 0.00 0.00 4.51 F
569 570 0.596083 TTTTTGGACGCCACGCATTG 60.596 50.000 0.00 0.00 30.78 2.82 F
2760 3180 1.905215 ACACAGTTGGCTCTGCTAGAT 59.095 47.619 0.00 0.00 38.84 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 2514 0.323629 TCAGGTTTGTAAGAGGCCCG 59.676 55.000 0.00 0.00 0.00 6.13 R
2713 3133 4.141733 TGAGCATAACGAAGATGGAATGGA 60.142 41.667 0.00 0.00 0.00 3.41 R
2760 3180 3.173151 TGTCAGCTTGTTCCCTGATAGA 58.827 45.455 0.00 0.00 39.95 1.98 R
3228 3737 9.179909 TGTTGTCCTTTTGTAAGAACAGATAAA 57.820 29.630 0.00 0.00 36.83 1.40 R
3265 3774 7.015680 AGAACCACCATGTCTGAGATATAGAT 58.984 38.462 0.00 0.00 0.00 1.98 R
3406 3918 2.036217 CCAATTGCTTGAGCTCACCAAA 59.964 45.455 24.60 16.34 42.66 3.28 R
3558 4070 2.802816 GTCAGATGCGTCAAAAGTCTGT 59.197 45.455 8.99 0.00 37.96 3.41 R
4480 5007 0.395686 AGACTCATCATCCATGCCGG 59.604 55.000 0.00 0.00 31.70 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.240230 CGGTTGCCGTGTGTGTTAT 58.760 52.632 0.00 0.00 42.73 1.89
231 232 3.451141 TTGGCCTTGCAGTTTTGTAAG 57.549 42.857 3.32 0.00 43.94 2.34
232 233 2.660572 TGGCCTTGCAGTTTTGTAAGA 58.339 42.857 3.32 0.00 46.27 2.10
233 234 2.622942 TGGCCTTGCAGTTTTGTAAGAG 59.377 45.455 3.32 0.10 46.27 2.85
234 235 2.608016 GGCCTTGCAGTTTTGTAAGAGC 60.608 50.000 0.00 8.06 46.27 4.09
235 236 2.034558 GCCTTGCAGTTTTGTAAGAGCA 59.965 45.455 6.90 0.00 46.27 4.26
236 237 3.305608 GCCTTGCAGTTTTGTAAGAGCAT 60.306 43.478 6.90 0.00 46.27 3.79
237 238 4.479619 CCTTGCAGTTTTGTAAGAGCATC 58.520 43.478 6.90 0.00 46.27 3.91
251 252 2.846371 GCATCTCCAACAGAAGCGT 58.154 52.632 0.00 0.00 36.17 5.07
252 253 1.160137 GCATCTCCAACAGAAGCGTT 58.840 50.000 0.00 0.00 36.17 4.84
253 254 2.346803 GCATCTCCAACAGAAGCGTTA 58.653 47.619 0.00 0.00 36.17 3.18
254 255 2.939103 GCATCTCCAACAGAAGCGTTAT 59.061 45.455 0.00 0.00 36.17 1.89
255 256 4.119862 GCATCTCCAACAGAAGCGTTATA 58.880 43.478 0.00 0.00 36.17 0.98
256 257 4.752101 GCATCTCCAACAGAAGCGTTATAT 59.248 41.667 0.00 0.00 36.17 0.86
257 258 5.926542 GCATCTCCAACAGAAGCGTTATATA 59.073 40.000 0.00 0.00 36.17 0.86
258 259 6.423905 GCATCTCCAACAGAAGCGTTATATAA 59.576 38.462 0.00 0.00 36.17 0.98
259 260 7.359598 GCATCTCCAACAGAAGCGTTATATAAG 60.360 40.741 0.00 0.00 36.17 1.73
260 261 5.983720 TCTCCAACAGAAGCGTTATATAAGC 59.016 40.000 0.00 2.53 0.00 3.09
261 262 4.743151 TCCAACAGAAGCGTTATATAAGCG 59.257 41.667 0.00 4.54 35.78 4.68
262 263 4.743151 CCAACAGAAGCGTTATATAAGCGA 59.257 41.667 16.49 0.00 35.78 4.93
263 264 5.332355 CCAACAGAAGCGTTATATAAGCGAC 60.332 44.000 16.49 11.57 35.78 5.19
264 265 3.973135 ACAGAAGCGTTATATAAGCGACG 59.027 43.478 16.49 9.87 38.45 5.12
276 277 2.997072 GCGACGCGCGGTATAAAA 59.003 55.556 35.22 0.00 44.55 1.52
277 278 1.344498 GCGACGCGCGGTATAAAAA 59.656 52.632 35.22 0.00 44.55 1.94
278 279 0.916320 GCGACGCGCGGTATAAAAAC 60.916 55.000 35.22 11.64 44.55 2.43
279 280 0.641783 CGACGCGCGGTATAAAAACT 59.358 50.000 35.22 8.59 36.03 2.66
280 281 1.588082 CGACGCGCGGTATAAAAACTG 60.588 52.381 35.22 0.99 36.03 3.16
281 282 0.095762 ACGCGCGGTATAAAAACTGC 59.904 50.000 35.22 0.00 46.30 4.40
289 290 6.295685 GCGGTATAAAAACTGCTTTTAACG 57.704 37.500 0.65 6.93 46.27 3.18
290 291 5.219896 GCGGTATAAAAACTGCTTTTAACGC 60.220 40.000 18.21 18.21 46.27 4.84
291 292 5.001819 CGGTATAAAAACTGCTTTTAACGCG 59.998 40.000 3.53 3.53 41.64 6.01
292 293 4.879014 ATAAAAACTGCTTTTAACGCGC 57.121 36.364 5.73 0.00 41.64 6.86
293 294 1.117234 AAAACTGCTTTTAACGCGCG 58.883 45.000 30.96 30.96 0.00 6.86
294 295 1.266124 AAACTGCTTTTAACGCGCGC 61.266 50.000 32.58 23.91 0.00 6.86
308 309 3.122323 GCGCGGACCCGATTTGAA 61.122 61.111 13.24 0.00 42.83 2.69
309 310 3.089784 CGCGGACCCGATTTGAAG 58.910 61.111 13.24 0.00 42.83 3.02
310 311 1.740296 CGCGGACCCGATTTGAAGT 60.740 57.895 13.24 0.00 42.83 3.01
311 312 1.693083 CGCGGACCCGATTTGAAGTC 61.693 60.000 13.24 0.00 42.83 3.01
312 313 0.391263 GCGGACCCGATTTGAAGTCT 60.391 55.000 13.24 0.00 42.83 3.24
313 314 1.641577 CGGACCCGATTTGAAGTCTC 58.358 55.000 1.54 0.00 42.83 3.36
314 315 1.739371 CGGACCCGATTTGAAGTCTCC 60.739 57.143 1.54 0.00 42.83 3.71
315 316 1.278127 GGACCCGATTTGAAGTCTCCA 59.722 52.381 0.00 0.00 0.00 3.86
316 317 2.622436 GACCCGATTTGAAGTCTCCAG 58.378 52.381 0.00 0.00 0.00 3.86
317 318 1.978580 ACCCGATTTGAAGTCTCCAGT 59.021 47.619 0.00 0.00 0.00 4.00
318 319 3.170717 ACCCGATTTGAAGTCTCCAGTA 58.829 45.455 0.00 0.00 0.00 2.74
319 320 3.195825 ACCCGATTTGAAGTCTCCAGTAG 59.804 47.826 0.00 0.00 0.00 2.57
320 321 3.190874 CCGATTTGAAGTCTCCAGTAGC 58.809 50.000 0.00 0.00 0.00 3.58
321 322 3.190874 CGATTTGAAGTCTCCAGTAGCC 58.809 50.000 0.00 0.00 0.00 3.93
322 323 2.743636 TTTGAAGTCTCCAGTAGCCG 57.256 50.000 0.00 0.00 0.00 5.52
323 324 0.895530 TTGAAGTCTCCAGTAGCCGG 59.104 55.000 0.00 0.00 0.00 6.13
324 325 0.039180 TGAAGTCTCCAGTAGCCGGA 59.961 55.000 5.05 0.00 0.00 5.14
325 326 0.456628 GAAGTCTCCAGTAGCCGGAC 59.543 60.000 5.05 0.00 0.00 4.79
326 327 0.251653 AAGTCTCCAGTAGCCGGACA 60.252 55.000 5.05 0.00 0.00 4.02
327 328 0.251653 AGTCTCCAGTAGCCGGACAA 60.252 55.000 5.05 0.00 0.00 3.18
328 329 0.606604 GTCTCCAGTAGCCGGACAAA 59.393 55.000 5.05 0.00 0.00 2.83
329 330 1.001633 GTCTCCAGTAGCCGGACAAAA 59.998 52.381 5.05 0.00 0.00 2.44
330 331 1.695242 TCTCCAGTAGCCGGACAAAAA 59.305 47.619 5.05 0.00 0.00 1.94
351 352 3.517974 CGCGCGCGCTATAACTAA 58.482 55.556 45.97 0.00 39.32 2.24
352 353 2.059575 CGCGCGCGCTATAACTAAT 58.940 52.632 45.97 0.00 39.32 1.73
353 354 0.246374 CGCGCGCGCTATAACTAATG 60.246 55.000 45.97 26.31 39.32 1.90
354 355 0.516524 GCGCGCGCTATAACTAATGC 60.517 55.000 44.38 16.88 38.26 3.56
355 356 0.781787 CGCGCGCTATAACTAATGCA 59.218 50.000 30.48 0.00 0.00 3.96
356 357 1.201704 CGCGCGCTATAACTAATGCAG 60.202 52.381 30.48 3.74 0.00 4.41
357 358 1.462541 GCGCGCTATAACTAATGCAGC 60.463 52.381 26.67 0.00 0.00 5.25
360 361 2.493997 GCTATAACTAATGCAGCGCG 57.506 50.000 0.00 0.00 0.00 6.86
361 362 1.462541 GCTATAACTAATGCAGCGCGC 60.463 52.381 26.66 26.66 42.89 6.86
371 372 1.990674 GCAGCGCGCATTAAAAAGG 59.009 52.632 35.10 11.20 41.79 3.11
372 373 1.990674 CAGCGCGCATTAAAAAGGC 59.009 52.632 35.10 0.00 0.00 4.35
373 374 0.732196 CAGCGCGCATTAAAAAGGCA 60.732 50.000 35.10 0.00 0.00 4.75
374 375 0.173255 AGCGCGCATTAAAAAGGCAT 59.827 45.000 35.10 3.94 0.00 4.40
375 376 0.572125 GCGCGCATTAAAAAGGCATC 59.428 50.000 29.10 0.00 0.00 3.91
376 377 0.839477 CGCGCATTAAAAAGGCATCG 59.161 50.000 8.75 0.00 0.00 3.84
377 378 0.572125 GCGCATTAAAAAGGCATCGC 59.428 50.000 0.30 0.00 34.61 4.58
378 379 0.839477 CGCATTAAAAAGGCATCGCG 59.161 50.000 0.00 0.00 35.14 5.87
379 380 0.572125 GCATTAAAAAGGCATCGCGC 59.428 50.000 0.00 0.00 41.28 6.86
380 381 0.839477 CATTAAAAAGGCATCGCGCG 59.161 50.000 26.76 26.76 43.84 6.86
381 382 0.865639 ATTAAAAAGGCATCGCGCGC 60.866 50.000 27.95 23.91 43.84 6.86
382 383 2.188849 TTAAAAAGGCATCGCGCGCA 62.189 50.000 32.61 18.69 43.84 6.09
383 384 2.576287 TAAAAAGGCATCGCGCGCAG 62.576 55.000 32.61 23.08 43.84 5.18
399 400 3.592381 CGCAGCATATTTAGTGTGTCC 57.408 47.619 0.00 0.00 0.00 4.02
400 401 2.033747 CGCAGCATATTTAGTGTGTCCG 60.034 50.000 0.00 0.00 0.00 4.79
401 402 2.287915 GCAGCATATTTAGTGTGTCCGG 59.712 50.000 0.00 0.00 0.00 5.14
402 403 3.531538 CAGCATATTTAGTGTGTCCGGT 58.468 45.455 0.00 0.00 0.00 5.28
403 404 3.555956 CAGCATATTTAGTGTGTCCGGTC 59.444 47.826 0.00 0.00 0.00 4.79
404 405 2.538449 GCATATTTAGTGTGTCCGGTCG 59.462 50.000 0.00 0.00 0.00 4.79
405 406 2.282701 TATTTAGTGTGTCCGGTCGC 57.717 50.000 0.00 2.55 0.00 5.19
406 407 0.734942 ATTTAGTGTGTCCGGTCGCG 60.735 55.000 0.00 0.00 0.00 5.87
407 408 3.902162 TTAGTGTGTCCGGTCGCGC 62.902 63.158 16.50 16.50 0.00 6.86
422 423 3.745230 CGCGCGCTGCAAACTTTG 61.745 61.111 30.48 5.07 46.97 2.77
423 424 3.397317 GCGCGCTGCAAACTTTGG 61.397 61.111 26.67 0.00 45.45 3.28
424 425 2.730604 CGCGCTGCAAACTTTGGG 60.731 61.111 5.56 0.00 0.00 4.12
425 426 3.037833 GCGCTGCAAACTTTGGGC 61.038 61.111 0.00 0.00 0.00 5.36
426 427 2.730094 CGCTGCAAACTTTGGGCT 59.270 55.556 0.00 0.00 0.00 5.19
427 428 1.662446 CGCTGCAAACTTTGGGCTG 60.662 57.895 0.00 0.00 0.00 4.85
428 429 1.957695 GCTGCAAACTTTGGGCTGC 60.958 57.895 3.69 0.00 43.39 5.25
429 430 1.744014 CTGCAAACTTTGGGCTGCT 59.256 52.632 0.00 0.00 35.78 4.24
430 431 0.599204 CTGCAAACTTTGGGCTGCTG 60.599 55.000 0.00 0.00 35.78 4.41
431 432 1.957695 GCAAACTTTGGGCTGCTGC 60.958 57.895 7.10 7.10 38.76 5.25
432 433 1.442567 CAAACTTTGGGCTGCTGCA 59.557 52.632 17.89 0.88 41.91 4.41
433 434 0.599204 CAAACTTTGGGCTGCTGCAG 60.599 55.000 24.80 24.80 41.91 4.41
434 435 0.756442 AAACTTTGGGCTGCTGCAGA 60.756 50.000 32.30 9.72 41.91 4.26
435 436 0.541296 AACTTTGGGCTGCTGCAGAT 60.541 50.000 32.30 5.69 41.91 2.90
436 437 1.248785 ACTTTGGGCTGCTGCAGATG 61.249 55.000 32.30 15.45 41.91 2.90
437 438 1.945354 CTTTGGGCTGCTGCAGATGG 61.945 60.000 32.30 8.09 41.91 3.51
438 439 3.949885 TTGGGCTGCTGCAGATGGG 62.950 63.158 32.30 7.68 41.91 4.00
439 440 4.119363 GGGCTGCTGCAGATGGGA 62.119 66.667 32.30 0.00 41.91 4.37
440 441 2.827642 GGCTGCTGCAGATGGGAC 60.828 66.667 32.30 13.44 41.91 4.46
441 442 2.827642 GCTGCTGCAGATGGGACC 60.828 66.667 32.30 9.52 39.41 4.46
442 443 2.513204 CTGCTGCAGATGGGACCG 60.513 66.667 24.88 0.00 32.44 4.79
443 444 4.783621 TGCTGCAGATGGGACCGC 62.784 66.667 20.43 0.00 0.00 5.68
444 445 4.479993 GCTGCAGATGGGACCGCT 62.480 66.667 20.43 0.00 0.00 5.52
445 446 2.270205 CTGCAGATGGGACCGCTT 59.730 61.111 8.42 0.00 0.00 4.68
446 447 2.046023 TGCAGATGGGACCGCTTG 60.046 61.111 0.00 0.00 0.00 4.01
447 448 2.268920 GCAGATGGGACCGCTTGA 59.731 61.111 0.00 0.00 0.00 3.02
448 449 1.153086 GCAGATGGGACCGCTTGAT 60.153 57.895 0.00 0.00 0.00 2.57
449 450 0.749454 GCAGATGGGACCGCTTGATT 60.749 55.000 0.00 0.00 0.00 2.57
450 451 1.019673 CAGATGGGACCGCTTGATTG 58.980 55.000 0.00 0.00 0.00 2.67
451 452 0.107017 AGATGGGACCGCTTGATTGG 60.107 55.000 0.00 0.00 0.00 3.16
452 453 1.076777 ATGGGACCGCTTGATTGGG 60.077 57.895 0.00 0.00 0.00 4.12
453 454 1.570857 ATGGGACCGCTTGATTGGGA 61.571 55.000 0.00 0.00 0.00 4.37
454 455 1.749258 GGGACCGCTTGATTGGGAC 60.749 63.158 0.00 0.00 0.00 4.46
455 456 1.749258 GGACCGCTTGATTGGGACC 60.749 63.158 0.00 0.00 0.00 4.46
456 457 2.046314 ACCGCTTGATTGGGACCG 60.046 61.111 0.00 0.00 0.00 4.79
457 458 3.508840 CCGCTTGATTGGGACCGC 61.509 66.667 0.00 0.00 0.00 5.68
458 459 2.436646 CGCTTGATTGGGACCGCT 60.437 61.111 0.00 0.00 0.00 5.52
459 460 2.753966 CGCTTGATTGGGACCGCTG 61.754 63.158 0.00 0.00 0.00 5.18
460 461 2.409870 GCTTGATTGGGACCGCTGG 61.410 63.158 0.00 0.00 0.00 4.85
461 462 1.299648 CTTGATTGGGACCGCTGGA 59.700 57.895 1.50 0.00 0.00 3.86
462 463 1.002624 TTGATTGGGACCGCTGGAC 60.003 57.895 1.50 0.00 0.00 4.02
463 464 1.488705 TTGATTGGGACCGCTGGACT 61.489 55.000 1.50 0.00 0.00 3.85
464 465 1.153349 GATTGGGACCGCTGGACTC 60.153 63.158 1.50 0.00 0.00 3.36
465 466 2.907897 GATTGGGACCGCTGGACTCG 62.908 65.000 1.50 0.00 0.00 4.18
478 479 4.794439 ACTCGCGCGCTGTGCATA 62.794 61.111 30.48 3.74 46.97 3.14
479 480 3.333189 CTCGCGCGCTGTGCATAT 61.333 61.111 30.48 0.00 46.97 1.78
480 481 2.874694 CTCGCGCGCTGTGCATATT 61.875 57.895 30.48 0.00 46.97 1.28
481 482 2.023181 CGCGCGCTGTGCATATTT 59.977 55.556 30.48 0.00 46.97 1.40
482 483 1.583451 CGCGCGCTGTGCATATTTT 60.583 52.632 30.48 0.00 46.97 1.82
483 484 0.315788 CGCGCGCTGTGCATATTTTA 60.316 50.000 30.48 0.00 46.97 1.52
484 485 1.112459 GCGCGCTGTGCATATTTTAC 58.888 50.000 26.67 0.00 46.97 2.01
485 486 1.375496 CGCGCTGTGCATATTTTACG 58.625 50.000 14.19 0.00 46.97 3.18
486 487 1.741993 GCGCTGTGCATATTTTACGG 58.258 50.000 8.57 0.00 45.45 4.02
487 488 1.741993 CGCTGTGCATATTTTACGGC 58.258 50.000 0.00 0.00 41.94 5.68
488 489 1.741993 GCTGTGCATATTTTACGGCG 58.258 50.000 4.80 4.80 37.02 6.46
489 490 1.741993 CTGTGCATATTTTACGGCGC 58.258 50.000 6.90 0.00 37.29 6.53
490 491 0.026933 TGTGCATATTTTACGGCGCG 59.973 50.000 6.90 0.00 39.50 6.86
491 492 0.027063 GTGCATATTTTACGGCGCGT 59.973 50.000 6.90 5.65 44.35 6.01
492 493 0.026933 TGCATATTTTACGGCGCGTG 59.973 50.000 6.90 2.96 41.39 5.34
493 494 0.027063 GCATATTTTACGGCGCGTGT 59.973 50.000 6.90 9.85 41.39 4.49
494 495 1.530236 GCATATTTTACGGCGCGTGTT 60.530 47.619 6.90 0.00 41.39 3.32
495 496 2.098120 CATATTTTACGGCGCGTGTTG 58.902 47.619 6.90 0.00 41.39 3.33
496 497 0.443088 TATTTTACGGCGCGTGTTGG 59.557 50.000 6.90 0.00 41.39 3.77
497 498 1.229315 ATTTTACGGCGCGTGTTGGA 61.229 50.000 6.90 0.00 41.39 3.53
498 499 1.833434 TTTTACGGCGCGTGTTGGAG 61.833 55.000 6.90 0.00 41.39 3.86
502 503 3.959975 GGCGCGTGTTGGAGCAAA 61.960 61.111 8.43 0.00 34.13 3.68
503 504 2.725815 GCGCGTGTTGGAGCAAAC 60.726 61.111 8.43 0.00 32.60 2.93
504 505 2.425124 CGCGTGTTGGAGCAAACG 60.425 61.111 0.00 0.00 39.00 3.60
505 506 2.713154 GCGTGTTGGAGCAAACGT 59.287 55.556 0.00 0.00 38.28 3.99
506 507 1.368850 GCGTGTTGGAGCAAACGTC 60.369 57.895 0.00 0.00 38.28 4.34
507 508 1.772063 GCGTGTTGGAGCAAACGTCT 61.772 55.000 0.00 0.00 38.28 4.18
508 509 0.655733 CGTGTTGGAGCAAACGTCTT 59.344 50.000 0.00 0.00 32.47 3.01
509 510 1.332904 CGTGTTGGAGCAAACGTCTTC 60.333 52.381 0.00 0.00 32.47 2.87
510 511 1.940613 GTGTTGGAGCAAACGTCTTCT 59.059 47.619 0.00 0.00 32.47 2.85
511 512 3.128349 GTGTTGGAGCAAACGTCTTCTA 58.872 45.455 0.00 0.00 32.47 2.10
512 513 3.184581 GTGTTGGAGCAAACGTCTTCTAG 59.815 47.826 0.00 0.00 32.47 2.43
513 514 2.080286 TGGAGCAAACGTCTTCTAGC 57.920 50.000 0.00 0.00 0.00 3.42
514 515 0.992802 GGAGCAAACGTCTTCTAGCG 59.007 55.000 0.00 0.00 0.00 4.26
515 516 0.367210 GAGCAAACGTCTTCTAGCGC 59.633 55.000 0.00 0.00 0.00 5.92
516 517 1.014564 AGCAAACGTCTTCTAGCGCC 61.015 55.000 2.29 0.00 0.00 6.53
517 518 1.967597 GCAAACGTCTTCTAGCGCCC 61.968 60.000 2.29 0.00 0.00 6.13
518 519 0.389948 CAAACGTCTTCTAGCGCCCT 60.390 55.000 2.29 0.00 0.00 5.19
519 520 1.135199 CAAACGTCTTCTAGCGCCCTA 60.135 52.381 2.29 0.00 0.00 3.53
520 521 1.180029 AACGTCTTCTAGCGCCCTAA 58.820 50.000 2.29 0.00 0.00 2.69
521 522 1.180029 ACGTCTTCTAGCGCCCTAAA 58.820 50.000 2.29 0.00 0.00 1.85
522 523 1.547372 ACGTCTTCTAGCGCCCTAAAA 59.453 47.619 2.29 0.00 0.00 1.52
523 524 2.028748 ACGTCTTCTAGCGCCCTAAAAA 60.029 45.455 2.29 0.00 0.00 1.94
543 544 4.886247 AAAAACTACTTGCACGCTGTAA 57.114 36.364 0.00 0.00 0.00 2.41
544 545 4.886247 AAAACTACTTGCACGCTGTAAA 57.114 36.364 0.00 0.00 0.00 2.01
545 546 3.872560 AACTACTTGCACGCTGTAAAC 57.127 42.857 0.00 0.00 0.00 2.01
546 547 2.140717 ACTACTTGCACGCTGTAAACC 58.859 47.619 0.00 0.00 0.00 3.27
547 548 1.463444 CTACTTGCACGCTGTAAACCC 59.537 52.381 0.00 0.00 0.00 4.11
548 549 0.464735 ACTTGCACGCTGTAAACCCA 60.465 50.000 0.00 0.00 0.00 4.51
549 550 0.881118 CTTGCACGCTGTAAACCCAT 59.119 50.000 0.00 0.00 0.00 4.00
550 551 1.269448 CTTGCACGCTGTAAACCCATT 59.731 47.619 0.00 0.00 0.00 3.16
551 552 1.323412 TGCACGCTGTAAACCCATTT 58.677 45.000 0.00 0.00 0.00 2.32
552 553 1.683917 TGCACGCTGTAAACCCATTTT 59.316 42.857 0.00 0.00 0.00 1.82
553 554 2.101582 TGCACGCTGTAAACCCATTTTT 59.898 40.909 0.00 0.00 0.00 1.94
567 568 3.437867 TTTTTGGACGCCACGCAT 58.562 50.000 0.00 0.00 30.78 4.73
568 569 1.736586 TTTTTGGACGCCACGCATT 59.263 47.368 0.00 0.00 30.78 3.56
569 570 0.596083 TTTTTGGACGCCACGCATTG 60.596 50.000 0.00 0.00 30.78 2.82
581 582 4.440127 GCATTGGGCGGCTGTTGG 62.440 66.667 9.56 0.00 0.00 3.77
582 583 2.676121 CATTGGGCGGCTGTTGGA 60.676 61.111 9.56 0.00 0.00 3.53
583 584 2.361610 ATTGGGCGGCTGTTGGAG 60.362 61.111 9.56 0.00 0.00 3.86
584 585 2.905996 ATTGGGCGGCTGTTGGAGA 61.906 57.895 9.56 0.00 0.00 3.71
585 586 2.215451 ATTGGGCGGCTGTTGGAGAT 62.215 55.000 9.56 0.00 0.00 2.75
586 587 2.825836 GGGCGGCTGTTGGAGATG 60.826 66.667 9.56 0.00 0.00 2.90
587 588 3.512516 GGCGGCTGTTGGAGATGC 61.513 66.667 0.00 0.00 0.00 3.91
588 589 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
589 590 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
661 681 2.457366 ACCGAAGCAAAGACTAGGTG 57.543 50.000 0.00 0.00 31.87 4.00
735 1025 5.725362 GGAACCACATATCCTGCTATCTAC 58.275 45.833 0.00 0.00 32.75 2.59
843 1244 6.375174 TGTGTTTCTGCAAGCATAAGACATAT 59.625 34.615 12.64 0.00 0.00 1.78
872 1273 5.360999 CACATCAATGGTCCTAGTCAGTCTA 59.639 44.000 0.00 0.00 0.00 2.59
873 1274 5.958380 ACATCAATGGTCCTAGTCAGTCTAA 59.042 40.000 0.00 0.00 0.00 2.10
881 1282 3.332783 TCCTAGTCAGTCTAACCTCCACA 59.667 47.826 0.00 0.00 0.00 4.17
882 1283 4.017407 TCCTAGTCAGTCTAACCTCCACAT 60.017 45.833 0.00 0.00 0.00 3.21
890 1291 4.348168 AGTCTAACCTCCACATGTGACTTT 59.652 41.667 27.46 15.40 30.54 2.66
905 1306 3.315470 GTGACTTTTCCTCTGAACCCAAC 59.685 47.826 0.00 0.00 0.00 3.77
973 1385 6.153340 GCATGCATACCTTCATACCCAAATAT 59.847 38.462 14.21 0.00 0.00 1.28
1012 1424 4.564372 CACACTGAAATATGTCTGACCTCG 59.436 45.833 5.17 0.00 0.00 4.63
1040 1452 5.087323 TCTTGTCCAAGGAACTCTGATAGT 58.913 41.667 7.16 0.00 38.49 2.12
1053 1465 4.020218 ACTCTGATAGTTTTGCTGTGCCTA 60.020 41.667 0.00 0.00 33.35 3.93
1112 1524 3.499338 TCCATGAACCAGCTTCAAATGT 58.501 40.909 0.00 0.00 42.37 2.71
1468 1880 8.976353 CATATAGCTTGTTCTATGGGAGAGTAT 58.024 37.037 0.00 0.00 34.93 2.12
2094 2514 2.193248 GCCATGCCCAGTAGTCCC 59.807 66.667 0.00 0.00 0.00 4.46
2760 3180 1.905215 ACACAGTTGGCTCTGCTAGAT 59.095 47.619 0.00 0.00 38.84 1.98
3228 3737 5.484290 TCTCTCTATTTCTTTCGGGGAAACT 59.516 40.000 0.00 0.00 35.84 2.66
3406 3918 3.242011 AGTGGTGCAATCCCAGAAAAAT 58.758 40.909 0.00 0.00 31.13 1.82
3558 4070 7.610305 GGAAAGATACCAACTGGAAATCAACTA 59.390 37.037 1.86 0.00 38.94 2.24
3753 4265 2.028112 GGTGGTCTTCTGTGTGATGCTA 60.028 50.000 0.00 0.00 0.00 3.49
4017 4534 4.985538 ACCACTGTTGTGTTCTCCATATT 58.014 39.130 0.00 0.00 42.34 1.28
4019 4536 5.241506 ACCACTGTTGTGTTCTCCATATTTG 59.758 40.000 0.00 0.00 42.34 2.32
4036 4553 8.385491 TCCATATTTGATGTAATCTAGTGCCAT 58.615 33.333 0.00 0.00 45.81 4.40
4047 4564 9.845740 TGTAATCTAGTGCCATGTATTGTAAAT 57.154 29.630 0.00 0.00 0.00 1.40
4165 4692 4.829872 AATGTTCCTTGGGATACGTGTA 57.170 40.909 0.00 0.00 37.60 2.90
4166 4693 5.367945 AATGTTCCTTGGGATACGTGTAT 57.632 39.130 0.00 0.00 37.60 2.29
4195 4722 6.995364 TGCAAATCAAATCAATTCCAGAAGA 58.005 32.000 0.00 0.00 0.00 2.87
4202 4729 8.413309 TCAAATCAATTCCAGAAGAAGACATT 57.587 30.769 0.00 0.00 38.07 2.71
4334 4861 1.553248 ACATGATGCTTGCCAAATGCT 59.447 42.857 0.00 0.00 42.00 3.79
4361 4888 3.050275 GCCGCTCATAATCCGCCC 61.050 66.667 0.00 0.00 0.00 6.13
4414 4941 2.042464 TCGAGCTGAATCCCTAGCATT 58.958 47.619 0.00 0.00 42.29 3.56
4415 4942 3.005897 GTCGAGCTGAATCCCTAGCATTA 59.994 47.826 0.00 0.00 42.29 1.90
4416 4943 3.834813 TCGAGCTGAATCCCTAGCATTAT 59.165 43.478 0.00 0.00 42.29 1.28
4417 4944 4.081972 TCGAGCTGAATCCCTAGCATTATC 60.082 45.833 0.00 0.00 42.29 1.75
4418 4945 4.081752 CGAGCTGAATCCCTAGCATTATCT 60.082 45.833 0.00 0.00 42.29 1.98
4419 4946 5.418676 GAGCTGAATCCCTAGCATTATCTC 58.581 45.833 0.00 0.00 42.29 2.75
4420 4947 5.092968 AGCTGAATCCCTAGCATTATCTCT 58.907 41.667 0.00 0.00 42.29 3.10
4421 4948 5.187576 AGCTGAATCCCTAGCATTATCTCTC 59.812 44.000 0.00 0.00 42.29 3.20
4422 4949 5.187576 GCTGAATCCCTAGCATTATCTCTCT 59.812 44.000 0.00 0.00 39.67 3.10
4423 4950 6.295802 GCTGAATCCCTAGCATTATCTCTCTT 60.296 42.308 0.00 0.00 39.67 2.85
4424 4951 7.623999 TGAATCCCTAGCATTATCTCTCTTT 57.376 36.000 0.00 0.00 0.00 2.52
4425 4952 8.727100 TGAATCCCTAGCATTATCTCTCTTTA 57.273 34.615 0.00 0.00 0.00 1.85
4426 4953 8.589338 TGAATCCCTAGCATTATCTCTCTTTAC 58.411 37.037 0.00 0.00 0.00 2.01
4427 4954 8.497910 AATCCCTAGCATTATCTCTCTTTACA 57.502 34.615 0.00 0.00 0.00 2.41
4428 4955 7.291411 TCCCTAGCATTATCTCTCTTTACAC 57.709 40.000 0.00 0.00 0.00 2.90
4429 4956 7.069986 TCCCTAGCATTATCTCTCTTTACACT 58.930 38.462 0.00 0.00 0.00 3.55
4430 4957 7.565398 TCCCTAGCATTATCTCTCTTTACACTT 59.435 37.037 0.00 0.00 0.00 3.16
4431 4958 7.655328 CCCTAGCATTATCTCTCTTTACACTTG 59.345 40.741 0.00 0.00 0.00 3.16
4432 4959 6.917217 AGCATTATCTCTCTTTACACTTGC 57.083 37.500 0.00 0.00 0.00 4.01
4433 4960 6.409704 AGCATTATCTCTCTTTACACTTGCA 58.590 36.000 0.00 0.00 0.00 4.08
4434 4961 7.052873 AGCATTATCTCTCTTTACACTTGCAT 58.947 34.615 0.00 0.00 0.00 3.96
4435 4962 7.226325 AGCATTATCTCTCTTTACACTTGCATC 59.774 37.037 0.00 0.00 0.00 3.91
4436 4963 7.226325 GCATTATCTCTCTTTACACTTGCATCT 59.774 37.037 0.00 0.00 0.00 2.90
4437 4964 9.755804 CATTATCTCTCTTTACACTTGCATCTA 57.244 33.333 0.00 0.00 0.00 1.98
4438 4965 9.979578 ATTATCTCTCTTTACACTTGCATCTAG 57.020 33.333 0.00 0.00 0.00 2.43
4439 4966 7.652524 ATCTCTCTTTACACTTGCATCTAGA 57.347 36.000 0.00 0.00 0.00 2.43
4440 4967 7.468141 TCTCTCTTTACACTTGCATCTAGAA 57.532 36.000 0.00 0.00 0.00 2.10
4441 4968 7.542890 TCTCTCTTTACACTTGCATCTAGAAG 58.457 38.462 0.00 0.00 0.00 2.85
4442 4969 7.177568 TCTCTCTTTACACTTGCATCTAGAAGT 59.822 37.037 0.00 0.00 32.48 3.01
4443 4970 8.349568 TCTCTTTACACTTGCATCTAGAAGTA 57.650 34.615 0.00 0.00 31.09 2.24
4480 5007 4.113354 CGTAGGTCCTTTCTGTATCAAGC 58.887 47.826 0.00 0.00 0.00 4.01
4545 5072 5.564651 CGAAATGCTTAGTGTTGTGGGAATT 60.565 40.000 0.00 0.00 0.00 2.17
4665 5192 7.333174 TGATTTGTAATTTACATGCACTCTCGA 59.667 33.333 9.95 0.00 38.68 4.04
4667 5194 8.710835 TTTGTAATTTACATGCACTCTCGATA 57.289 30.769 9.95 0.00 38.68 2.92
4703 5230 1.129998 CAATGTTCAGCCTTCGAGCAG 59.870 52.381 0.00 0.00 34.23 4.24
4704 5231 0.610174 ATGTTCAGCCTTCGAGCAGA 59.390 50.000 0.00 0.00 34.23 4.26
4705 5232 0.392706 TGTTCAGCCTTCGAGCAGAA 59.607 50.000 1.12 1.12 36.10 3.02
4706 5233 1.002430 TGTTCAGCCTTCGAGCAGAAT 59.998 47.619 7.56 0.00 39.93 2.40
4707 5234 2.079925 GTTCAGCCTTCGAGCAGAATT 58.920 47.619 7.56 0.00 39.93 2.17
4708 5235 3.262420 GTTCAGCCTTCGAGCAGAATTA 58.738 45.455 7.56 0.00 39.93 1.40
4709 5236 3.610040 TCAGCCTTCGAGCAGAATTAA 57.390 42.857 0.00 0.00 38.34 1.40
4710 5237 3.937814 TCAGCCTTCGAGCAGAATTAAA 58.062 40.909 0.00 0.00 38.34 1.52
4711 5238 3.684788 TCAGCCTTCGAGCAGAATTAAAC 59.315 43.478 0.00 0.00 38.34 2.01
4712 5239 3.686726 CAGCCTTCGAGCAGAATTAAACT 59.313 43.478 0.00 0.00 38.34 2.66
4713 5240 4.870426 CAGCCTTCGAGCAGAATTAAACTA 59.130 41.667 0.00 0.00 38.34 2.24
4714 5241 5.351465 CAGCCTTCGAGCAGAATTAAACTAA 59.649 40.000 0.00 0.00 38.34 2.24
4715 5242 5.938125 AGCCTTCGAGCAGAATTAAACTAAA 59.062 36.000 0.00 0.00 38.34 1.85
4716 5243 6.430000 AGCCTTCGAGCAGAATTAAACTAAAA 59.570 34.615 0.00 0.00 38.34 1.52
4717 5244 7.040686 AGCCTTCGAGCAGAATTAAACTAAAAA 60.041 33.333 0.00 0.00 38.34 1.94
4809 5336 5.156355 CCATTGAACAGATTCCTTTCGTTG 58.844 41.667 0.00 0.00 33.49 4.10
4814 5341 3.804036 ACAGATTCCTTTCGTTGACACA 58.196 40.909 0.00 0.00 0.00 3.72
4816 5343 5.547465 ACAGATTCCTTTCGTTGACACATA 58.453 37.500 0.00 0.00 0.00 2.29
4833 5360 6.654582 TGACACATAACACAGTTGCTCAATAT 59.345 34.615 0.00 0.00 0.00 1.28
4868 5395 4.963318 TCTTCAAGTGACAGGAGTGAAT 57.037 40.909 0.00 0.00 0.00 2.57
4869 5396 4.635223 TCTTCAAGTGACAGGAGTGAATG 58.365 43.478 0.00 0.00 0.00 2.67
4870 5397 4.344968 TCTTCAAGTGACAGGAGTGAATGA 59.655 41.667 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.480419 GCATGGCACGGTAAGTCATATC 59.520 50.000 0.00 0.00 0.00 1.63
55 56 0.179004 AATCGGTTTGACTGGCACCA 60.179 50.000 0.00 0.00 0.00 4.17
231 232 1.005340 CGCTTCTGTTGGAGATGCTC 58.995 55.000 0.00 0.00 45.55 4.26
232 233 0.322975 ACGCTTCTGTTGGAGATGCT 59.677 50.000 0.00 0.00 45.55 3.79
233 234 1.160137 AACGCTTCTGTTGGAGATGC 58.840 50.000 0.00 0.00 44.71 3.91
234 235 7.359598 GCTTATATAACGCTTCTGTTGGAGATG 60.360 40.741 8.70 0.00 33.32 2.90
235 236 6.647067 GCTTATATAACGCTTCTGTTGGAGAT 59.353 38.462 8.70 0.00 33.32 2.75
236 237 5.983720 GCTTATATAACGCTTCTGTTGGAGA 59.016 40.000 8.70 0.00 33.32 3.71
237 238 5.107837 CGCTTATATAACGCTTCTGTTGGAG 60.108 44.000 12.20 0.00 33.32 3.86
238 239 4.743151 CGCTTATATAACGCTTCTGTTGGA 59.257 41.667 12.20 0.00 33.32 3.53
239 240 4.743151 TCGCTTATATAACGCTTCTGTTGG 59.257 41.667 12.20 0.00 33.32 3.77
240 241 5.607570 CGTCGCTTATATAACGCTTCTGTTG 60.608 44.000 12.20 0.64 33.32 3.33
241 242 4.440103 CGTCGCTTATATAACGCTTCTGTT 59.560 41.667 12.20 0.00 35.86 3.16
242 243 3.973135 CGTCGCTTATATAACGCTTCTGT 59.027 43.478 12.20 0.00 0.00 3.41
243 244 4.532564 CGTCGCTTATATAACGCTTCTG 57.467 45.455 12.20 0.00 0.00 3.02
260 261 0.641783 AGTTTTTATACCGCGCGTCG 59.358 50.000 29.95 17.12 38.08 5.12
261 262 1.849348 GCAGTTTTTATACCGCGCGTC 60.849 52.381 29.95 7.02 0.00 5.19
262 263 0.095762 GCAGTTTTTATACCGCGCGT 59.904 50.000 29.95 18.85 0.00 6.01
263 264 0.372334 AGCAGTTTTTATACCGCGCG 59.628 50.000 25.67 25.67 0.00 6.86
264 265 2.537639 AAGCAGTTTTTATACCGCGC 57.462 45.000 0.00 0.00 0.00 6.86
265 266 5.001819 CGTTAAAAGCAGTTTTTATACCGCG 59.998 40.000 0.00 0.00 40.08 6.46
266 267 5.219896 GCGTTAAAAGCAGTTTTTATACCGC 60.220 40.000 17.51 17.51 40.08 5.68
267 268 5.001819 CGCGTTAAAAGCAGTTTTTATACCG 59.998 40.000 0.00 7.40 40.08 4.02
268 269 5.219896 GCGCGTTAAAAGCAGTTTTTATACC 60.220 40.000 8.43 0.00 40.08 2.73
269 270 5.494331 CGCGCGTTAAAAGCAGTTTTTATAC 60.494 40.000 24.19 4.64 40.08 1.47
270 271 4.550362 CGCGCGTTAAAAGCAGTTTTTATA 59.450 37.500 24.19 0.00 40.08 0.98
271 272 3.359580 CGCGCGTTAAAAGCAGTTTTTAT 59.640 39.130 24.19 0.00 40.08 1.40
272 273 2.714985 CGCGCGTTAAAAGCAGTTTTTA 59.285 40.909 24.19 0.00 39.61 1.52
273 274 1.515221 CGCGCGTTAAAAGCAGTTTTT 59.485 42.857 24.19 0.28 41.68 1.94
274 275 1.117234 CGCGCGTTAAAAGCAGTTTT 58.883 45.000 24.19 0.00 39.31 2.43
275 276 1.266124 GCGCGCGTTAAAAGCAGTTT 61.266 50.000 32.35 0.00 34.19 2.66
276 277 1.724581 GCGCGCGTTAAAAGCAGTT 60.725 52.632 32.35 0.00 34.19 3.16
277 278 2.127383 GCGCGCGTTAAAAGCAGT 60.127 55.556 32.35 0.00 34.19 4.40
278 279 3.223688 CGCGCGCGTTAAAAGCAG 61.224 61.111 42.49 13.34 34.35 4.24
279 280 4.728095 CCGCGCGCGTTAAAAGCA 62.728 61.111 45.51 0.00 37.81 3.91
280 281 4.433431 TCCGCGCGCGTTAAAAGC 62.433 61.111 45.51 11.64 37.81 3.51
281 282 2.569812 GTCCGCGCGCGTTAAAAG 60.570 61.111 45.51 31.47 37.81 2.27
282 283 4.074634 GGTCCGCGCGCGTTAAAA 62.075 61.111 45.51 25.60 37.81 1.52
291 292 3.095898 CTTCAAATCGGGTCCGCGC 62.096 63.158 0.00 0.00 39.59 6.86
292 293 1.693083 GACTTCAAATCGGGTCCGCG 61.693 60.000 0.00 0.00 39.59 6.46
293 294 0.391263 AGACTTCAAATCGGGTCCGC 60.391 55.000 4.27 0.00 39.59 5.54
294 295 1.641577 GAGACTTCAAATCGGGTCCG 58.358 55.000 2.52 2.52 41.35 4.79
295 296 1.278127 TGGAGACTTCAAATCGGGTCC 59.722 52.381 0.00 0.00 0.00 4.46
296 297 2.028020 ACTGGAGACTTCAAATCGGGTC 60.028 50.000 0.00 0.00 0.00 4.46
297 298 1.978580 ACTGGAGACTTCAAATCGGGT 59.021 47.619 0.00 0.00 0.00 5.28
298 299 2.770164 ACTGGAGACTTCAAATCGGG 57.230 50.000 0.00 0.00 0.00 5.14
299 300 3.190874 GCTACTGGAGACTTCAAATCGG 58.809 50.000 0.00 0.00 0.00 4.18
300 301 3.190874 GGCTACTGGAGACTTCAAATCG 58.809 50.000 0.00 0.00 0.00 3.34
301 302 3.190874 CGGCTACTGGAGACTTCAAATC 58.809 50.000 0.00 0.00 0.00 2.17
302 303 2.093447 CCGGCTACTGGAGACTTCAAAT 60.093 50.000 0.00 0.00 0.00 2.32
303 304 1.275291 CCGGCTACTGGAGACTTCAAA 59.725 52.381 0.00 0.00 0.00 2.69
304 305 0.895530 CCGGCTACTGGAGACTTCAA 59.104 55.000 0.00 0.00 0.00 2.69
305 306 0.039180 TCCGGCTACTGGAGACTTCA 59.961 55.000 0.00 0.00 0.00 3.02
306 307 0.456628 GTCCGGCTACTGGAGACTTC 59.543 60.000 0.00 0.00 35.82 3.01
307 308 0.251653 TGTCCGGCTACTGGAGACTT 60.252 55.000 0.00 0.00 35.82 3.01
308 309 0.251653 TTGTCCGGCTACTGGAGACT 60.252 55.000 0.00 0.00 35.82 3.24
309 310 0.606604 TTTGTCCGGCTACTGGAGAC 59.393 55.000 0.00 0.00 35.82 3.36
310 311 1.344065 TTTTGTCCGGCTACTGGAGA 58.656 50.000 0.00 0.00 35.82 3.71
311 312 2.178912 TTTTTGTCCGGCTACTGGAG 57.821 50.000 0.00 0.00 35.82 3.86
335 336 0.516524 GCATTAGTTATAGCGCGCGC 60.517 55.000 45.10 45.10 42.33 6.86
336 337 0.781787 TGCATTAGTTATAGCGCGCG 59.218 50.000 28.44 28.44 0.00 6.86
337 338 1.462541 GCTGCATTAGTTATAGCGCGC 60.463 52.381 26.66 26.66 0.00 6.86
338 339 2.493997 GCTGCATTAGTTATAGCGCG 57.506 50.000 0.00 0.00 0.00 6.86
341 342 1.462541 GCGCGCTGCATTAGTTATAGC 60.463 52.381 26.67 0.00 45.45 2.97
342 343 2.493997 GCGCGCTGCATTAGTTATAG 57.506 50.000 26.67 0.00 45.45 1.31
353 354 1.990674 CCTTTTTAATGCGCGCTGC 59.009 52.632 33.29 15.63 46.70 5.25
354 355 0.732196 TGCCTTTTTAATGCGCGCTG 60.732 50.000 33.29 11.12 0.00 5.18
355 356 0.173255 ATGCCTTTTTAATGCGCGCT 59.827 45.000 33.29 16.10 0.00 5.92
356 357 0.572125 GATGCCTTTTTAATGCGCGC 59.428 50.000 27.26 27.26 0.00 6.86
357 358 0.839477 CGATGCCTTTTTAATGCGCG 59.161 50.000 0.00 0.00 0.00 6.86
358 359 0.572125 GCGATGCCTTTTTAATGCGC 59.428 50.000 0.00 0.00 36.35 6.09
359 360 0.839477 CGCGATGCCTTTTTAATGCG 59.161 50.000 0.00 0.00 38.28 4.73
360 361 0.572125 GCGCGATGCCTTTTTAATGC 59.428 50.000 12.10 0.00 37.76 3.56
361 362 0.839477 CGCGCGATGCCTTTTTAATG 59.161 50.000 28.94 0.00 42.08 1.90
362 363 0.865639 GCGCGCGATGCCTTTTTAAT 60.866 50.000 37.18 0.00 42.08 1.40
363 364 1.513160 GCGCGCGATGCCTTTTTAA 60.513 52.632 37.18 0.00 42.08 1.52
364 365 2.099446 GCGCGCGATGCCTTTTTA 59.901 55.556 37.18 0.00 42.08 1.52
365 366 3.951655 CTGCGCGCGATGCCTTTTT 62.952 57.895 37.18 0.00 42.08 1.94
366 367 4.465512 CTGCGCGCGATGCCTTTT 62.466 61.111 37.18 0.00 42.08 2.27
371 372 3.584250 AATATGCTGCGCGCGATGC 62.584 57.895 37.18 33.14 43.27 3.91
372 373 0.163574 TAAATATGCTGCGCGCGATG 59.836 50.000 37.18 25.13 43.27 3.84
373 374 0.439985 CTAAATATGCTGCGCGCGAT 59.560 50.000 37.18 20.72 43.27 4.58
374 375 0.874175 ACTAAATATGCTGCGCGCGA 60.874 50.000 37.18 17.91 43.27 5.87
375 376 0.719194 CACTAAATATGCTGCGCGCG 60.719 55.000 28.44 28.44 43.27 6.86
376 377 0.304705 ACACTAAATATGCTGCGCGC 59.695 50.000 27.26 27.26 39.77 6.86
377 378 1.327460 ACACACTAAATATGCTGCGCG 59.673 47.619 0.00 0.00 0.00 6.86
378 379 2.286418 GGACACACTAAATATGCTGCGC 60.286 50.000 0.00 0.00 0.00 6.09
379 380 2.033747 CGGACACACTAAATATGCTGCG 60.034 50.000 0.00 0.00 0.00 5.18
380 381 2.287915 CCGGACACACTAAATATGCTGC 59.712 50.000 0.00 0.00 0.00 5.25
381 382 3.531538 ACCGGACACACTAAATATGCTG 58.468 45.455 9.46 0.00 0.00 4.41
382 383 3.737047 CGACCGGACACACTAAATATGCT 60.737 47.826 9.46 0.00 0.00 3.79
383 384 2.538449 CGACCGGACACACTAAATATGC 59.462 50.000 9.46 0.00 0.00 3.14
384 385 2.538449 GCGACCGGACACACTAAATATG 59.462 50.000 9.46 0.00 0.00 1.78
385 386 2.797087 CGCGACCGGACACACTAAATAT 60.797 50.000 9.46 0.00 0.00 1.28
386 387 1.467883 CGCGACCGGACACACTAAATA 60.468 52.381 9.46 0.00 0.00 1.40
387 388 0.734942 CGCGACCGGACACACTAAAT 60.735 55.000 9.46 0.00 0.00 1.40
388 389 1.372004 CGCGACCGGACACACTAAA 60.372 57.895 9.46 0.00 0.00 1.85
389 390 2.256158 CGCGACCGGACACACTAA 59.744 61.111 9.46 0.00 0.00 2.24
390 391 4.409218 GCGCGACCGGACACACTA 62.409 66.667 12.10 0.00 34.32 2.74
405 406 3.745230 CAAAGTTTGCAGCGCGCG 61.745 61.111 28.44 28.44 46.97 6.86
406 407 3.397317 CCAAAGTTTGCAGCGCGC 61.397 61.111 26.66 26.66 42.89 6.86
407 408 2.730604 CCCAAAGTTTGCAGCGCG 60.731 61.111 10.25 0.00 0.00 6.86
408 409 3.037833 GCCCAAAGTTTGCAGCGC 61.038 61.111 10.25 0.00 0.00 5.92
409 410 1.662446 CAGCCCAAAGTTTGCAGCG 60.662 57.895 17.87 11.83 34.70 5.18
410 411 1.957695 GCAGCCCAAAGTTTGCAGC 60.958 57.895 16.81 16.81 36.59 5.25
411 412 0.599204 CAGCAGCCCAAAGTTTGCAG 60.599 55.000 10.25 4.93 38.97 4.41
412 413 1.442567 CAGCAGCCCAAAGTTTGCA 59.557 52.632 10.25 0.00 38.97 4.08
413 414 1.957695 GCAGCAGCCCAAAGTTTGC 60.958 57.895 10.25 0.00 36.83 3.68
414 415 0.599204 CTGCAGCAGCCCAAAGTTTG 60.599 55.000 10.14 8.73 41.13 2.93
415 416 0.756442 TCTGCAGCAGCCCAAAGTTT 60.756 50.000 18.43 0.00 41.13 2.66
416 417 0.541296 ATCTGCAGCAGCCCAAAGTT 60.541 50.000 18.43 0.00 41.13 2.66
417 418 1.076192 ATCTGCAGCAGCCCAAAGT 59.924 52.632 18.43 0.00 41.13 2.66
418 419 1.511305 CATCTGCAGCAGCCCAAAG 59.489 57.895 18.43 0.00 41.13 2.77
419 420 1.980232 CCATCTGCAGCAGCCCAAA 60.980 57.895 18.43 0.00 41.13 3.28
420 421 2.361992 CCATCTGCAGCAGCCCAA 60.362 61.111 18.43 0.01 41.13 4.12
421 422 4.435970 CCCATCTGCAGCAGCCCA 62.436 66.667 18.43 0.43 41.13 5.36
422 423 4.119363 TCCCATCTGCAGCAGCCC 62.119 66.667 18.43 0.00 41.13 5.19
423 424 2.827642 GTCCCATCTGCAGCAGCC 60.828 66.667 18.43 0.00 41.13 4.85
424 425 2.827642 GGTCCCATCTGCAGCAGC 60.828 66.667 18.43 2.05 42.57 5.25
425 426 2.513204 CGGTCCCATCTGCAGCAG 60.513 66.667 17.10 17.10 0.00 4.24
426 427 4.783621 GCGGTCCCATCTGCAGCA 62.784 66.667 9.47 0.00 39.28 4.41
427 428 3.984193 AAGCGGTCCCATCTGCAGC 62.984 63.158 9.47 0.00 41.63 5.25
428 429 2.110967 CAAGCGGTCCCATCTGCAG 61.111 63.158 7.63 7.63 41.63 4.41
429 430 1.913951 ATCAAGCGGTCCCATCTGCA 61.914 55.000 0.00 0.00 41.63 4.41
430 431 0.749454 AATCAAGCGGTCCCATCTGC 60.749 55.000 0.00 0.00 39.72 4.26
431 432 1.019673 CAATCAAGCGGTCCCATCTG 58.980 55.000 0.00 0.00 0.00 2.90
432 433 0.107017 CCAATCAAGCGGTCCCATCT 60.107 55.000 0.00 0.00 0.00 2.90
433 434 1.103398 CCCAATCAAGCGGTCCCATC 61.103 60.000 0.00 0.00 0.00 3.51
434 435 1.076777 CCCAATCAAGCGGTCCCAT 60.077 57.895 0.00 0.00 0.00 4.00
435 436 2.227757 TCCCAATCAAGCGGTCCCA 61.228 57.895 0.00 0.00 0.00 4.37
436 437 1.749258 GTCCCAATCAAGCGGTCCC 60.749 63.158 0.00 0.00 0.00 4.46
437 438 1.749258 GGTCCCAATCAAGCGGTCC 60.749 63.158 0.00 0.00 0.00 4.46
438 439 2.106683 CGGTCCCAATCAAGCGGTC 61.107 63.158 0.00 0.00 33.05 4.79
439 440 2.046314 CGGTCCCAATCAAGCGGT 60.046 61.111 0.00 0.00 33.05 5.68
440 441 3.508840 GCGGTCCCAATCAAGCGG 61.509 66.667 0.00 0.00 36.91 5.52
441 442 2.436646 AGCGGTCCCAATCAAGCG 60.437 61.111 0.00 0.00 39.26 4.68
442 443 2.409870 CCAGCGGTCCCAATCAAGC 61.410 63.158 0.00 0.00 0.00 4.01
443 444 1.026718 GTCCAGCGGTCCCAATCAAG 61.027 60.000 0.00 0.00 0.00 3.02
444 445 1.002624 GTCCAGCGGTCCCAATCAA 60.003 57.895 0.00 0.00 0.00 2.57
445 446 1.899437 GAGTCCAGCGGTCCCAATCA 61.899 60.000 0.00 0.00 0.00 2.57
446 447 1.153349 GAGTCCAGCGGTCCCAATC 60.153 63.158 0.00 0.00 0.00 2.67
447 448 2.990479 GAGTCCAGCGGTCCCAAT 59.010 61.111 0.00 0.00 0.00 3.16
448 449 3.691342 CGAGTCCAGCGGTCCCAA 61.691 66.667 0.00 0.00 0.00 4.12
461 462 4.794439 TATGCACAGCGCGCGAGT 62.794 61.111 37.18 27.59 46.97 4.18
462 463 2.365444 AAATATGCACAGCGCGCGAG 62.365 55.000 37.18 26.85 46.97 5.03
463 464 1.976478 AAAATATGCACAGCGCGCGA 61.976 50.000 37.18 12.44 46.97 5.87
464 465 0.315788 TAAAATATGCACAGCGCGCG 60.316 50.000 28.44 28.44 46.97 6.86
465 466 1.112459 GTAAAATATGCACAGCGCGC 58.888 50.000 26.66 26.66 46.97 6.86
466 467 1.375496 CGTAAAATATGCACAGCGCG 58.625 50.000 0.00 0.00 46.97 6.86
467 468 1.741993 CCGTAAAATATGCACAGCGC 58.258 50.000 0.00 0.00 42.89 5.92
468 469 1.741993 GCCGTAAAATATGCACAGCG 58.258 50.000 0.00 0.00 0.00 5.18
469 470 1.741993 CGCCGTAAAATATGCACAGC 58.258 50.000 0.00 0.00 0.00 4.40
470 471 1.741993 GCGCCGTAAAATATGCACAG 58.258 50.000 0.00 0.00 0.00 3.66
471 472 0.026933 CGCGCCGTAAAATATGCACA 59.973 50.000 0.00 0.00 0.00 4.57
472 473 0.027063 ACGCGCCGTAAAATATGCAC 59.973 50.000 5.73 0.00 38.73 4.57
473 474 0.026933 CACGCGCCGTAAAATATGCA 59.973 50.000 5.73 0.00 38.32 3.96
474 475 0.027063 ACACGCGCCGTAAAATATGC 59.973 50.000 5.73 0.00 38.32 3.14
475 476 2.098120 CAACACGCGCCGTAAAATATG 58.902 47.619 5.73 0.00 38.32 1.78
476 477 1.062880 CCAACACGCGCCGTAAAATAT 59.937 47.619 5.73 0.00 38.32 1.28
477 478 0.443088 CCAACACGCGCCGTAAAATA 59.557 50.000 5.73 0.00 38.32 1.40
478 479 1.208103 CCAACACGCGCCGTAAAAT 59.792 52.632 5.73 0.00 38.32 1.82
479 480 1.833434 CTCCAACACGCGCCGTAAAA 61.833 55.000 5.73 0.00 38.32 1.52
480 481 2.279985 TCCAACACGCGCCGTAAA 60.280 55.556 5.73 0.00 38.32 2.01
481 482 2.735478 CTCCAACACGCGCCGTAA 60.735 61.111 5.73 0.00 38.32 3.18
485 486 3.959975 TTTGCTCCAACACGCGCC 61.960 61.111 5.73 0.00 0.00 6.53
486 487 2.725815 GTTTGCTCCAACACGCGC 60.726 61.111 5.73 0.00 0.00 6.86
487 488 2.425124 CGTTTGCTCCAACACGCG 60.425 61.111 3.53 3.53 0.00 6.01
488 489 1.368850 GACGTTTGCTCCAACACGC 60.369 57.895 0.00 0.00 34.19 5.34
489 490 0.655733 AAGACGTTTGCTCCAACACG 59.344 50.000 0.00 9.43 35.63 4.49
490 491 1.940613 AGAAGACGTTTGCTCCAACAC 59.059 47.619 0.00 0.00 0.00 3.32
491 492 2.325583 AGAAGACGTTTGCTCCAACA 57.674 45.000 0.00 0.00 0.00 3.33
492 493 2.157863 GCTAGAAGACGTTTGCTCCAAC 59.842 50.000 0.00 0.00 0.00 3.77
493 494 2.413837 GCTAGAAGACGTTTGCTCCAA 58.586 47.619 0.00 0.00 0.00 3.53
494 495 1.668919 CGCTAGAAGACGTTTGCTCCA 60.669 52.381 0.00 0.00 0.00 3.86
495 496 0.992802 CGCTAGAAGACGTTTGCTCC 59.007 55.000 0.00 0.00 0.00 4.70
496 497 0.367210 GCGCTAGAAGACGTTTGCTC 59.633 55.000 0.00 0.00 0.00 4.26
497 498 1.014564 GGCGCTAGAAGACGTTTGCT 61.015 55.000 7.64 0.00 0.00 3.91
498 499 1.420312 GGCGCTAGAAGACGTTTGC 59.580 57.895 7.64 0.00 0.00 3.68
499 500 0.389948 AGGGCGCTAGAAGACGTTTG 60.390 55.000 7.64 0.00 0.00 2.93
500 501 1.180029 TAGGGCGCTAGAAGACGTTT 58.820 50.000 7.64 0.00 0.00 3.60
501 502 1.180029 TTAGGGCGCTAGAAGACGTT 58.820 50.000 7.64 0.00 0.00 3.99
502 503 1.180029 TTTAGGGCGCTAGAAGACGT 58.820 50.000 7.64 0.00 0.00 4.34
503 504 2.288961 TTTTAGGGCGCTAGAAGACG 57.711 50.000 7.64 0.00 0.00 4.18
522 523 4.886247 TTACAGCGTGCAAGTAGTTTTT 57.114 36.364 0.59 0.00 0.00 1.94
523 524 4.496840 GGTTTACAGCGTGCAAGTAGTTTT 60.497 41.667 0.59 0.00 0.00 2.43
524 525 3.002965 GGTTTACAGCGTGCAAGTAGTTT 59.997 43.478 0.59 0.00 0.00 2.66
525 526 2.546789 GGTTTACAGCGTGCAAGTAGTT 59.453 45.455 0.59 0.00 0.00 2.24
526 527 2.140717 GGTTTACAGCGTGCAAGTAGT 58.859 47.619 0.59 3.10 0.00 2.73
527 528 1.463444 GGGTTTACAGCGTGCAAGTAG 59.537 52.381 0.59 0.00 0.00 2.57
528 529 1.202663 TGGGTTTACAGCGTGCAAGTA 60.203 47.619 0.59 0.00 0.00 2.24
529 530 0.464735 TGGGTTTACAGCGTGCAAGT 60.465 50.000 0.59 0.00 0.00 3.16
530 531 0.881118 ATGGGTTTACAGCGTGCAAG 59.119 50.000 0.00 0.00 0.00 4.01
531 532 1.323412 AATGGGTTTACAGCGTGCAA 58.677 45.000 0.00 0.00 0.00 4.08
532 533 1.323412 AAATGGGTTTACAGCGTGCA 58.677 45.000 0.00 0.00 0.00 4.57
533 534 2.432206 AAAATGGGTTTACAGCGTGC 57.568 45.000 0.00 0.00 0.00 5.34
550 551 0.596083 CAATGCGTGGCGTCCAAAAA 60.596 50.000 0.00 0.00 34.18 1.94
551 552 1.007964 CAATGCGTGGCGTCCAAAA 60.008 52.632 0.00 0.00 34.18 2.44
552 553 2.642129 CAATGCGTGGCGTCCAAA 59.358 55.556 0.00 0.00 34.18 3.28
553 554 3.361158 CCAATGCGTGGCGTCCAA 61.361 61.111 0.00 0.00 41.72 3.53
564 565 4.440127 CCAACAGCCGCCCAATGC 62.440 66.667 0.00 0.00 0.00 3.56
565 566 2.676121 TCCAACAGCCGCCCAATG 60.676 61.111 0.00 0.00 0.00 2.82
566 567 2.215451 ATCTCCAACAGCCGCCCAAT 62.215 55.000 0.00 0.00 0.00 3.16
567 568 2.905996 ATCTCCAACAGCCGCCCAA 61.906 57.895 0.00 0.00 0.00 4.12
568 569 3.329889 ATCTCCAACAGCCGCCCA 61.330 61.111 0.00 0.00 0.00 5.36
569 570 2.825836 CATCTCCAACAGCCGCCC 60.826 66.667 0.00 0.00 0.00 6.13
570 571 3.512516 GCATCTCCAACAGCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
571 572 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
572 573 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
584 585 3.718434 TCAAGGATGGATGGTTAGAGCAT 59.282 43.478 0.00 0.00 39.30 3.79
585 586 3.114606 TCAAGGATGGATGGTTAGAGCA 58.885 45.455 0.00 0.00 0.00 4.26
586 587 3.471680 GTCAAGGATGGATGGTTAGAGC 58.528 50.000 0.00 0.00 0.00 4.09
587 588 3.181450 GGGTCAAGGATGGATGGTTAGAG 60.181 52.174 0.00 0.00 0.00 2.43
588 589 2.777692 GGGTCAAGGATGGATGGTTAGA 59.222 50.000 0.00 0.00 0.00 2.10
589 590 2.158608 GGGGTCAAGGATGGATGGTTAG 60.159 54.545 0.00 0.00 0.00 2.34
661 681 2.484417 CCTATCACACAGGGCATCAGTC 60.484 54.545 0.00 0.00 0.00 3.51
728 1018 6.423302 GCAGGATGTTCTTCACATGTAGATAG 59.577 42.308 0.00 0.00 46.96 2.08
735 1025 5.366460 AGATAGCAGGATGTTCTTCACATG 58.634 41.667 0.00 0.00 46.96 3.21
775 1171 6.779049 ACGGTAAGTGATATTCTACATACCCA 59.221 38.462 11.33 0.00 37.68 4.51
776 1172 7.224522 ACGGTAAGTGATATTCTACATACCC 57.775 40.000 11.33 0.00 37.68 3.69
843 1244 7.092891 ACTGACTAGGACCATTGATGTGATTTA 60.093 37.037 0.00 0.00 0.00 1.40
872 1273 3.117512 AGGAAAAGTCACATGTGGAGGTT 60.118 43.478 25.16 14.34 0.00 3.50
873 1274 2.443255 AGGAAAAGTCACATGTGGAGGT 59.557 45.455 25.16 7.74 0.00 3.85
881 1282 3.138283 TGGGTTCAGAGGAAAAGTCACAT 59.862 43.478 0.00 0.00 34.13 3.21
882 1283 2.507886 TGGGTTCAGAGGAAAAGTCACA 59.492 45.455 0.00 0.00 34.13 3.58
890 1291 1.070134 CTGTCGTTGGGTTCAGAGGAA 59.930 52.381 0.00 0.00 0.00 3.36
905 1306 8.402472 GGATCTTATTCTATAGTGGATCTGTCG 58.598 40.741 0.00 0.00 0.00 4.35
973 1385 2.701951 AGTGTGGGTTTTCTCTTACGGA 59.298 45.455 0.00 0.00 0.00 4.69
1012 1424 3.009584 AGAGTTCCTTGGACAAGAATCCC 59.990 47.826 13.35 0.79 40.79 3.85
1040 1452 1.699634 AGAGGAGTAGGCACAGCAAAA 59.300 47.619 0.00 0.00 0.00 2.44
1045 1457 1.859302 AAGGAGAGGAGTAGGCACAG 58.141 55.000 0.00 0.00 0.00 3.66
1053 1465 1.353091 GTGGTGGAAAGGAGAGGAGT 58.647 55.000 0.00 0.00 0.00 3.85
1112 1524 1.941975 TCTCGTACGTGACACAACTCA 59.058 47.619 16.05 0.00 0.00 3.41
1468 1880 2.361104 GTTCCCAATCTGCGGGCA 60.361 61.111 0.00 0.00 44.11 5.36
2094 2514 0.323629 TCAGGTTTGTAAGAGGCCCG 59.676 55.000 0.00 0.00 0.00 6.13
2713 3133 4.141733 TGAGCATAACGAAGATGGAATGGA 60.142 41.667 0.00 0.00 0.00 3.41
2760 3180 3.173151 TGTCAGCTTGTTCCCTGATAGA 58.827 45.455 0.00 0.00 39.95 1.98
3228 3737 9.179909 TGTTGTCCTTTTGTAAGAACAGATAAA 57.820 29.630 0.00 0.00 36.83 1.40
3265 3774 7.015680 AGAACCACCATGTCTGAGATATAGAT 58.984 38.462 0.00 0.00 0.00 1.98
3406 3918 2.036217 CCAATTGCTTGAGCTCACCAAA 59.964 45.455 24.60 16.34 42.66 3.28
3558 4070 2.802816 GTCAGATGCGTCAAAAGTCTGT 59.197 45.455 8.99 0.00 37.96 3.41
3697 4209 1.404843 TACCCAACAGCCAAACCAAC 58.595 50.000 0.00 0.00 0.00 3.77
3838 4350 4.141158 ACCAAGTTTCCTCTTCAGATTGGT 60.141 41.667 4.95 4.95 43.18 3.67
3909 4426 2.637872 AGGGAAAGTTCTGGATCGAACA 59.362 45.455 13.74 0.00 44.37 3.18
3929 4446 6.071334 TGGATATAGAGAGCCATCCGTAAAAG 60.071 42.308 0.00 0.00 39.92 2.27
4017 4534 7.992608 ACAATACATGGCACTAGATTACATCAA 59.007 33.333 0.00 0.00 0.00 2.57
4019 4536 7.969536 ACAATACATGGCACTAGATTACATC 57.030 36.000 0.00 0.00 0.00 3.06
4047 4564 9.812347 AAGGAAAATACAATATATGGCAGATGA 57.188 29.630 4.57 0.00 0.00 2.92
4165 4692 9.976511 CTGGAATTGATTTGATTTGCATACTAT 57.023 29.630 0.00 0.00 0.00 2.12
4166 4693 9.187996 TCTGGAATTGATTTGATTTGCATACTA 57.812 29.630 0.00 0.00 0.00 1.82
4189 4716 5.046529 CGTATCAGGGAATGTCTTCTTCTG 58.953 45.833 0.00 0.00 35.72 3.02
4195 4722 5.129485 AGAATGTCGTATCAGGGAATGTCTT 59.871 40.000 0.00 0.00 0.00 3.01
4202 4729 8.595362 ATCATATTAGAATGTCGTATCAGGGA 57.405 34.615 0.00 0.00 0.00 4.20
4361 4888 2.288457 CCTACACGATGGCATACCTCTG 60.288 54.545 0.00 0.00 36.63 3.35
4393 4920 0.747255 TGCTAGGGATTCAGCTCGAC 59.253 55.000 0.00 0.00 38.63 4.20
4414 4941 8.753497 TCTAGATGCAAGTGTAAAGAGAGATA 57.247 34.615 0.00 0.00 0.00 1.98
4415 4942 7.652524 TCTAGATGCAAGTGTAAAGAGAGAT 57.347 36.000 0.00 0.00 0.00 2.75
4416 4943 7.177568 ACTTCTAGATGCAAGTGTAAAGAGAGA 59.822 37.037 5.57 0.00 31.42 3.10
4417 4944 7.319646 ACTTCTAGATGCAAGTGTAAAGAGAG 58.680 38.462 5.57 0.00 31.42 3.20
4418 4945 7.233389 ACTTCTAGATGCAAGTGTAAAGAGA 57.767 36.000 5.57 0.00 31.42 3.10
4419 4946 8.462811 TCTACTTCTAGATGCAAGTGTAAAGAG 58.537 37.037 5.57 0.00 34.60 2.85
4420 4947 8.349568 TCTACTTCTAGATGCAAGTGTAAAGA 57.650 34.615 5.57 0.00 34.60 2.52
4421 4948 9.029243 CATCTACTTCTAGATGCAAGTGTAAAG 57.971 37.037 5.57 0.00 46.05 1.85
4422 4949 8.932945 CATCTACTTCTAGATGCAAGTGTAAA 57.067 34.615 5.57 0.00 46.05 2.01
4433 4960 6.071984 ACCACGGAATCATCTACTTCTAGAT 58.928 40.000 0.00 0.00 39.93 1.98
4434 4961 5.446860 ACCACGGAATCATCTACTTCTAGA 58.553 41.667 0.00 0.00 33.32 2.43
4435 4962 5.561145 CGACCACGGAATCATCTACTTCTAG 60.561 48.000 0.00 0.00 35.72 2.43
4436 4963 4.275196 CGACCACGGAATCATCTACTTCTA 59.725 45.833 0.00 0.00 35.72 2.10
4437 4964 3.066900 CGACCACGGAATCATCTACTTCT 59.933 47.826 0.00 0.00 35.72 2.85
4438 4965 3.181489 ACGACCACGGAATCATCTACTTC 60.181 47.826 0.00 0.00 44.46 3.01
4439 4966 2.758979 ACGACCACGGAATCATCTACTT 59.241 45.455 0.00 0.00 44.46 2.24
4440 4967 2.376109 ACGACCACGGAATCATCTACT 58.624 47.619 0.00 0.00 44.46 2.57
4441 4968 2.865343 ACGACCACGGAATCATCTAC 57.135 50.000 0.00 0.00 44.46 2.59
4442 4969 2.882761 CCTACGACCACGGAATCATCTA 59.117 50.000 0.00 0.00 44.46 1.98
4443 4970 1.681793 CCTACGACCACGGAATCATCT 59.318 52.381 0.00 0.00 44.46 2.90
4480 5007 0.395686 AGACTCATCATCCATGCCGG 59.604 55.000 0.00 0.00 31.70 6.13
4545 5072 1.367471 CAGCGTCAGGTCCAGTTCA 59.633 57.895 0.00 0.00 0.00 3.18
4665 5192 6.042638 ACATTGACAGTGACTAGCAAGTAT 57.957 37.500 4.78 0.00 35.56 2.12
4667 5194 4.342862 ACATTGACAGTGACTAGCAAGT 57.657 40.909 4.78 2.48 39.21 3.16
4744 5271 3.088532 ACAGAAATGCCTAAATGCCGAA 58.911 40.909 0.00 0.00 0.00 4.30
4747 5274 3.548818 CGCTACAGAAATGCCTAAATGCC 60.549 47.826 0.00 0.00 0.00 4.40
4809 5336 4.811555 TTGAGCAACTGTGTTATGTGTC 57.188 40.909 0.00 0.00 0.00 3.67
4814 5341 9.410556 GAAAACAATATTGAGCAACTGTGTTAT 57.589 29.630 22.16 0.00 0.00 1.89
4816 5343 7.491682 AGAAAACAATATTGAGCAACTGTGTT 58.508 30.769 22.16 0.00 0.00 3.32
4833 5360 7.040755 TGTCACTTGAAGAACAGAAGAAAACAA 60.041 33.333 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.