Multiple sequence alignment - TraesCS7D01G050300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G050300 chr7D 100.000 3103 0 0 1 3103 25820226 25817124 0.000000e+00 5731.0
1 TraesCS7D01G050300 chr4A 87.765 2166 123 65 1 2111 710245535 710243457 0.000000e+00 2401.0
2 TraesCS7D01G050300 chr4A 88.872 674 36 24 2193 2833 710243333 710242666 0.000000e+00 793.0
3 TraesCS7D01G050300 chr4A 85.075 201 25 5 2865 3064 647262474 647262670 1.890000e-47 200.0
4 TraesCS7D01G050300 chr4A 84.422 199 26 5 2865 3062 647267094 647267288 1.140000e-44 191.0
5 TraesCS7D01G050300 chr4A 83.920 199 27 5 2865 3062 647257855 647258049 5.280000e-43 185.0
6 TraesCS7D01G050300 chr4A 82.692 208 32 3 2896 3103 710242664 710242461 6.840000e-42 182.0
7 TraesCS7D01G050300 chr4A 94.444 36 2 0 2005 2040 38641220 38641255 4.320000e-04 56.5
8 TraesCS7D01G050300 chr7A 92.402 1553 66 33 570 2111 26770238 26768727 0.000000e+00 2167.0
9 TraesCS7D01G050300 chr7A 84.704 778 38 26 2124 2845 26768677 26767925 0.000000e+00 702.0
10 TraesCS7D01G050300 chr7A 81.659 458 48 24 40 464 26774289 26773835 6.370000e-92 348.0
11 TraesCS7D01G050300 chr6D 83.756 197 29 3 2868 3064 16690791 16690598 1.900000e-42 183.0
12 TraesCS7D01G050300 chr2D 83.251 203 28 5 2865 3066 643740045 643739848 6.840000e-42 182.0
13 TraesCS7D01G050300 chrUn 83.163 196 31 2 2868 3063 48071672 48071479 8.840000e-41 178.0
14 TraesCS7D01G050300 chr4B 82.915 199 32 2 2865 3063 3435211 3435407 8.840000e-41 178.0
15 TraesCS7D01G050300 chr4B 82.915 199 32 2 2865 3063 3487695 3487891 8.840000e-41 178.0
16 TraesCS7D01G050300 chr4B 94.444 36 2 0 2011 2046 523452310 523452275 4.320000e-04 56.5
17 TraesCS7D01G050300 chr5B 88.333 60 7 0 1755 1814 495828086 495828027 4.290000e-09 73.1
18 TraesCS7D01G050300 chr5A 86.154 65 9 0 1753 1817 524011421 524011357 1.540000e-08 71.3
19 TraesCS7D01G050300 chr5D 85.484 62 9 0 1753 1814 412248077 412248016 7.180000e-07 65.8
20 TraesCS7D01G050300 chr4D 92.857 42 3 0 2005 2046 427463464 427463423 9.290000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G050300 chr7D 25817124 25820226 3102 True 5731.000000 5731 100.000 1 3103 1 chr7D.!!$R1 3102
1 TraesCS7D01G050300 chr4A 710242461 710245535 3074 True 1125.333333 2401 86.443 1 3103 3 chr4A.!!$R1 3102
2 TraesCS7D01G050300 chr7A 26767925 26774289 6364 True 1072.333333 2167 86.255 40 2845 3 chr7A.!!$R1 2805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 4100 0.037419 GCCGCCAAAATTCCATGTGT 60.037 50.0 0.0 0.0 0.00 3.72 F
1589 5156 0.108898 CAGAGCAGAGGAGTTGACCG 60.109 60.0 0.0 0.0 34.73 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 5163 0.244721 GACACCTGCCCAGCAAAATC 59.755 55.0 0.0 0.0 38.41 2.17 R
2969 6674 0.035439 CCCGGCCTCCGCATAATTAT 60.035 55.0 0.0 0.0 46.86 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.452264 CAGTGAGTGAGTATTCCCATCCA 59.548 47.826 0.00 0.00 0.00 3.41
32 33 4.346418 AGTGAGTGAGTATTCCCATCCATC 59.654 45.833 0.00 0.00 0.00 3.51
33 34 3.648067 TGAGTGAGTATTCCCATCCATCC 59.352 47.826 0.00 0.00 0.00 3.51
36 37 5.415065 AGTGAGTATTCCCATCCATCCATA 58.585 41.667 0.00 0.00 0.00 2.74
37 38 6.034659 AGTGAGTATTCCCATCCATCCATAT 58.965 40.000 0.00 0.00 0.00 1.78
38 39 6.069789 AGTGAGTATTCCCATCCATCCATATG 60.070 42.308 0.00 0.00 0.00 1.78
120 126 0.690762 ATCACCCGCTTAACCACACT 59.309 50.000 0.00 0.00 0.00 3.55
126 132 2.334838 CCGCTTAACCACACTACACTC 58.665 52.381 0.00 0.00 0.00 3.51
131 137 4.802918 GCTTAACCACACTACACTCCACAT 60.803 45.833 0.00 0.00 0.00 3.21
190 213 2.028165 GTCGTTACATCGCTTCTTCTGC 59.972 50.000 0.00 0.00 0.00 4.26
191 214 1.992667 CGTTACATCGCTTCTTCTGCA 59.007 47.619 0.00 0.00 0.00 4.41
192 215 2.604914 CGTTACATCGCTTCTTCTGCAT 59.395 45.455 0.00 0.00 0.00 3.96
193 216 3.302092 CGTTACATCGCTTCTTCTGCATC 60.302 47.826 0.00 0.00 0.00 3.91
194 217 2.687700 ACATCGCTTCTTCTGCATCT 57.312 45.000 0.00 0.00 0.00 2.90
195 218 2.548875 ACATCGCTTCTTCTGCATCTC 58.451 47.619 0.00 0.00 0.00 2.75
201 230 2.117865 CTTCTTCTGCATCTCCCTCCT 58.882 52.381 0.00 0.00 0.00 3.69
202 231 1.493861 TCTTCTGCATCTCCCTCCTG 58.506 55.000 0.00 0.00 0.00 3.86
220 249 5.338708 CCTCCTGTCCTGATTAACAACTCAT 60.339 44.000 0.00 0.00 0.00 2.90
224 253 8.328758 TCCTGTCCTGATTAACAACTCATAATT 58.671 33.333 0.00 0.00 0.00 1.40
230 259 9.888878 CCTGATTAACAACTCATAATTATGCTG 57.111 33.333 18.89 16.65 33.76 4.41
321 358 0.889306 CGGAAAACGCCCCCAATTTA 59.111 50.000 0.00 0.00 34.82 1.40
330 367 5.784578 ACGCCCCCAATTTATAAGAAATC 57.215 39.130 0.00 0.00 0.00 2.17
333 370 6.015434 ACGCCCCCAATTTATAAGAAATCATC 60.015 38.462 0.00 0.00 0.00 2.92
356 396 6.180472 TCTCCTTGGTTTTATTCTAAGCCAG 58.820 40.000 0.00 0.00 39.19 4.85
384 424 1.959848 TCGGTCAGACAGTGCAGAG 59.040 57.895 2.17 0.00 0.00 3.35
411 452 8.999431 ACGAATAAGAACAAGAAAGATAAAGCA 58.001 29.630 0.00 0.00 0.00 3.91
466 507 2.118076 CCATTGCCACCCACACCT 59.882 61.111 0.00 0.00 0.00 4.00
469 510 1.002624 ATTGCCACCCACACCTACG 60.003 57.895 0.00 0.00 0.00 3.51
476 517 1.255667 ACCCACACCTACGCCTACAG 61.256 60.000 0.00 0.00 0.00 2.74
484 525 0.526524 CTACGCCTACAGACAGCAGC 60.527 60.000 0.00 0.00 0.00 5.25
488 529 2.097038 CCTACAGACAGCAGCGTGC 61.097 63.158 2.28 2.28 45.46 5.34
510 4002 1.142748 CATCTTCCGGCGAGCTTCT 59.857 57.895 9.30 0.00 0.00 2.85
511 4003 0.385751 CATCTTCCGGCGAGCTTCTA 59.614 55.000 9.30 0.00 0.00 2.10
512 4004 0.386113 ATCTTCCGGCGAGCTTCTAC 59.614 55.000 9.30 0.00 0.00 2.59
513 4005 0.963856 TCTTCCGGCGAGCTTCTACA 60.964 55.000 9.30 0.00 0.00 2.74
514 4006 0.526524 CTTCCGGCGAGCTTCTACAG 60.527 60.000 9.30 0.00 0.00 2.74
515 4007 1.248785 TTCCGGCGAGCTTCTACAGT 61.249 55.000 9.30 0.00 0.00 3.55
517 4009 0.389948 CCGGCGAGCTTCTACAGTTT 60.390 55.000 9.30 0.00 0.00 2.66
519 4011 0.444260 GGCGAGCTTCTACAGTTTGC 59.556 55.000 0.00 0.00 41.45 3.68
520 4012 1.148310 GCGAGCTTCTACAGTTTGCA 58.852 50.000 0.00 0.00 41.73 4.08
530 4022 2.050168 AGTTTGCATTGCACCGCG 60.050 55.556 11.66 0.00 38.71 6.46
531 4023 2.354539 GTTTGCATTGCACCGCGT 60.355 55.556 11.66 0.00 38.71 6.01
536 4028 1.444212 GCATTGCACCGCGTCAAAT 60.444 52.632 4.92 0.00 0.00 2.32
539 4031 0.168788 ATTGCACCGCGTCAAATCAG 59.831 50.000 4.92 0.00 0.00 2.90
559 4092 2.150390 GGTTGAAATGCCGCCAAAATT 58.850 42.857 0.00 0.00 0.00 1.82
565 4098 0.903942 ATGCCGCCAAAATTCCATGT 59.096 45.000 0.00 0.00 0.00 3.21
566 4099 0.037512 TGCCGCCAAAATTCCATGTG 60.038 50.000 0.00 0.00 0.00 3.21
567 4100 0.037419 GCCGCCAAAATTCCATGTGT 60.037 50.000 0.00 0.00 0.00 3.72
568 4101 1.712401 CCGCCAAAATTCCATGTGTG 58.288 50.000 0.00 0.00 0.00 3.82
588 4121 6.970043 TGTGTGTTTGATTAGTTGTTGTTAGC 59.030 34.615 0.00 0.00 0.00 3.09
597 4130 2.226437 AGTTGTTGTTAGCGGCATCAAG 59.774 45.455 1.45 0.00 0.00 3.02
615 4148 6.420008 GCATCAAGCAATAATTTAGCCTCTTG 59.580 38.462 0.00 0.00 44.79 3.02
692 4228 3.194968 CCGCGTATATATTCCCCTTGTCT 59.805 47.826 4.92 0.00 0.00 3.41
771 4313 5.764192 CCATTCCATCCATCTTCTTCTTCTC 59.236 44.000 0.00 0.00 0.00 2.87
772 4314 5.365021 TTCCATCCATCTTCTTCTTCTCC 57.635 43.478 0.00 0.00 0.00 3.71
773 4315 4.629122 TCCATCCATCTTCTTCTTCTCCT 58.371 43.478 0.00 0.00 0.00 3.69
794 4336 3.757248 GATCCGCCATTGCCTCGGT 62.757 63.158 9.11 0.32 43.35 4.69
843 4389 2.031157 GCTTGCTTTTCCTGTCGCTTTA 60.031 45.455 0.00 0.00 0.00 1.85
846 4392 2.806244 TGCTTTTCCTGTCGCTTTAGTC 59.194 45.455 0.00 0.00 0.00 2.59
847 4393 2.159827 GCTTTTCCTGTCGCTTTAGTCG 60.160 50.000 0.00 0.00 0.00 4.18
849 4396 0.389426 TTCCTGTCGCTTTAGTCGGC 60.389 55.000 0.00 0.00 0.00 5.54
865 4412 2.032681 GCTTCCCGCCACTGTTCT 59.967 61.111 0.00 0.00 0.00 3.01
869 4418 3.052082 CCCGCCACTGTTCTGCTG 61.052 66.667 0.00 0.00 0.00 4.41
873 4422 2.433446 CCACTGTTCTGCTGGCCT 59.567 61.111 3.32 0.00 0.00 5.19
874 4423 1.673665 CCACTGTTCTGCTGGCCTC 60.674 63.158 3.32 0.00 0.00 4.70
875 4424 2.031516 CACTGTTCTGCTGGCCTCG 61.032 63.158 3.32 0.00 0.00 4.63
876 4425 2.435586 CTGTTCTGCTGGCCTCGG 60.436 66.667 3.32 0.53 0.00 4.63
877 4426 4.704833 TGTTCTGCTGGCCTCGGC 62.705 66.667 3.32 6.64 45.23 5.54
883 4432 4.221422 GCTGGCCTCGGCGTGATA 62.221 66.667 10.96 0.00 43.06 2.15
884 4433 2.499205 CTGGCCTCGGCGTGATAA 59.501 61.111 10.96 0.00 43.06 1.75
885 4434 1.592669 CTGGCCTCGGCGTGATAAG 60.593 63.158 10.96 0.00 43.06 1.73
886 4435 2.967615 GGCCTCGGCGTGATAAGC 60.968 66.667 10.96 5.00 43.06 3.09
887 4436 2.107141 GCCTCGGCGTGATAAGCT 59.893 61.111 10.96 0.00 34.52 3.74
888 4437 1.362717 GCCTCGGCGTGATAAGCTA 59.637 57.895 10.96 0.00 34.52 3.32
889 4438 0.664767 GCCTCGGCGTGATAAGCTAG 60.665 60.000 10.96 0.00 34.52 3.42
890 4439 0.664767 CCTCGGCGTGATAAGCTAGC 60.665 60.000 6.62 6.62 34.52 3.42
909 4458 5.050295 GCTAGCTAGCCACCTTTAATTTACG 60.050 44.000 31.67 0.00 43.39 3.18
966 4520 1.383799 CCATGCTGGGGTGAGGAAA 59.616 57.895 0.00 0.00 32.67 3.13
1589 5156 0.108898 CAGAGCAGAGGAGTTGACCG 60.109 60.000 0.00 0.00 34.73 4.79
1596 5163 0.602905 GAGGAGTTGACCGGTGGTTG 60.603 60.000 14.63 0.00 35.25 3.77
2000 5576 2.807045 GACCTGCTGTCGTCGCTG 60.807 66.667 0.00 0.00 33.49 5.18
2104 5683 1.317613 CTCGACTGGATGCTCTAGCT 58.682 55.000 3.26 0.00 42.66 3.32
2111 5690 0.170116 GGATGCTCTAGCTCGGATCG 59.830 60.000 3.26 0.00 42.66 3.69
2112 5691 1.160989 GATGCTCTAGCTCGGATCGA 58.839 55.000 3.26 0.00 42.66 3.59
2113 5692 1.537638 GATGCTCTAGCTCGGATCGAA 59.462 52.381 3.26 0.00 42.66 3.71
2114 5693 1.610363 TGCTCTAGCTCGGATCGAAT 58.390 50.000 3.26 0.00 42.66 3.34
2115 5694 1.957177 TGCTCTAGCTCGGATCGAATT 59.043 47.619 3.26 0.00 42.66 2.17
2116 5695 2.362397 TGCTCTAGCTCGGATCGAATTT 59.638 45.455 3.26 0.00 42.66 1.82
2117 5696 2.983803 GCTCTAGCTCGGATCGAATTTC 59.016 50.000 0.00 0.00 34.74 2.17
2118 5697 3.551046 GCTCTAGCTCGGATCGAATTTCA 60.551 47.826 0.00 0.00 34.74 2.69
2119 5698 4.225984 CTCTAGCTCGGATCGAATTTCAG 58.774 47.826 0.00 0.00 34.74 3.02
2121 5700 3.526931 AGCTCGGATCGAATTTCAGAA 57.473 42.857 0.00 0.00 34.74 3.02
2122 5701 3.452474 AGCTCGGATCGAATTTCAGAAG 58.548 45.455 0.00 0.00 34.74 2.85
2156 5784 3.658351 CCGAGACGGTGATTGAATTTC 57.342 47.619 1.80 0.00 42.73 2.17
2157 5785 2.029244 CCGAGACGGTGATTGAATTTCG 59.971 50.000 1.80 0.00 42.73 3.46
2158 5786 2.029244 CGAGACGGTGATTGAATTTCGG 59.971 50.000 0.00 0.00 0.00 4.30
2166 5800 3.129287 GTGATTGAATTTCGGCCATGTCT 59.871 43.478 2.24 0.00 0.00 3.41
2219 5853 0.596083 CGCCAAGTCCTAGCTCATCG 60.596 60.000 0.00 0.00 0.00 3.84
2285 5922 6.364976 CGTCTTCTTCTTCTTCTTCTTCTTCC 59.635 42.308 0.00 0.00 0.00 3.46
2304 5941 0.930310 CGCGTCCGTCATCATCAAAT 59.070 50.000 0.00 0.00 0.00 2.32
2439 6087 0.375106 GCTTAGAGTTGCGTCCATGC 59.625 55.000 0.00 0.00 0.00 4.06
2454 6102 1.152902 ATGCCCATGTCCATGTCCG 60.153 57.895 6.53 0.00 37.11 4.79
2544 6209 3.576982 ACTGTGGACGGACTTTTCATCTA 59.423 43.478 0.00 0.00 0.00 1.98
2581 6255 7.629008 GCTGTTGTGATGATGATAATTGGAACA 60.629 37.037 0.00 0.00 0.00 3.18
2582 6256 7.537715 TGTTGTGATGATGATAATTGGAACAC 58.462 34.615 0.00 0.00 39.29 3.32
2583 6257 6.698008 TGTGATGATGATAATTGGAACACC 57.302 37.500 0.00 0.00 39.29 4.16
2584 6258 6.425735 TGTGATGATGATAATTGGAACACCT 58.574 36.000 0.00 0.00 39.29 4.00
2586 6260 6.016777 GTGATGATGATAATTGGAACACCTCC 60.017 42.308 0.00 0.00 45.64 4.30
2710 6405 4.806892 TGAATGCATGAATAATGGAGGGT 58.193 39.130 0.00 0.00 40.31 4.34
2716 6411 4.441913 GCATGAATAATGGAGGGTTGTTGG 60.442 45.833 0.00 0.00 36.71 3.77
2787 6485 2.277072 CCCTCGCCTCTCCTCTCA 59.723 66.667 0.00 0.00 0.00 3.27
2797 6495 2.036992 CCTCTCCTCTCATTCCATTCCG 59.963 54.545 0.00 0.00 0.00 4.30
2799 6497 3.107601 TCTCCTCTCATTCCATTCCGTT 58.892 45.455 0.00 0.00 0.00 4.44
2807 6512 3.689161 TCATTCCATTCCGTTCATCACAC 59.311 43.478 0.00 0.00 0.00 3.82
2818 6523 2.805671 GTTCATCACACACGATTCACCA 59.194 45.455 0.00 0.00 0.00 4.17
2826 6531 0.591170 CACGATTCACCACCGCTTTT 59.409 50.000 0.00 0.00 0.00 2.27
2833 6538 0.878523 CACCACCGCTTTTCGACAGA 60.879 55.000 0.00 0.00 41.67 3.41
2839 6544 1.640428 CGCTTTTCGACAGAGGCATA 58.360 50.000 0.00 0.00 41.67 3.14
2845 6550 1.103803 TCGACAGAGGCATAGTGTCC 58.896 55.000 7.54 0.00 37.85 4.02
2846 6551 0.817654 CGACAGAGGCATAGTGTCCA 59.182 55.000 7.54 0.00 37.85 4.02
2847 6552 1.410517 CGACAGAGGCATAGTGTCCAT 59.589 52.381 7.54 0.00 37.85 3.41
2848 6553 2.544694 CGACAGAGGCATAGTGTCCATC 60.545 54.545 7.54 0.00 37.85 3.51
2849 6554 2.697751 GACAGAGGCATAGTGTCCATCT 59.302 50.000 2.62 0.00 35.54 2.90
2850 6555 3.891977 GACAGAGGCATAGTGTCCATCTA 59.108 47.826 2.62 0.00 35.54 1.98
2851 6556 4.487804 ACAGAGGCATAGTGTCCATCTAT 58.512 43.478 0.00 0.00 0.00 1.98
2852 6557 5.645201 ACAGAGGCATAGTGTCCATCTATA 58.355 41.667 0.00 0.00 0.00 1.31
2853 6558 5.478679 ACAGAGGCATAGTGTCCATCTATAC 59.521 44.000 0.00 0.00 0.00 1.47
2854 6559 5.478332 CAGAGGCATAGTGTCCATCTATACA 59.522 44.000 0.00 0.00 0.00 2.29
2855 6560 6.015095 CAGAGGCATAGTGTCCATCTATACAA 60.015 42.308 0.00 0.00 0.00 2.41
2856 6561 6.015010 AGAGGCATAGTGTCCATCTATACAAC 60.015 42.308 0.00 0.00 0.00 3.32
2857 6562 5.841237 AGGCATAGTGTCCATCTATACAACT 59.159 40.000 0.00 0.00 0.00 3.16
2858 6563 7.010771 AGGCATAGTGTCCATCTATACAACTA 58.989 38.462 0.00 0.00 0.00 2.24
2859 6564 7.039644 AGGCATAGTGTCCATCTATACAACTAC 60.040 40.741 0.00 0.00 0.00 2.73
2860 6565 7.091443 GCATAGTGTCCATCTATACAACTACC 58.909 42.308 0.00 0.00 0.00 3.18
2861 6566 5.769484 AGTGTCCATCTATACAACTACCG 57.231 43.478 0.00 0.00 0.00 4.02
2862 6567 4.037684 AGTGTCCATCTATACAACTACCGC 59.962 45.833 0.00 0.00 0.00 5.68
2863 6568 4.037684 GTGTCCATCTATACAACTACCGCT 59.962 45.833 0.00 0.00 0.00 5.52
2864 6569 4.647853 TGTCCATCTATACAACTACCGCTT 59.352 41.667 0.00 0.00 0.00 4.68
2865 6570 5.128171 TGTCCATCTATACAACTACCGCTTT 59.872 40.000 0.00 0.00 0.00 3.51
2866 6571 6.047231 GTCCATCTATACAACTACCGCTTTT 58.953 40.000 0.00 0.00 0.00 2.27
2867 6572 6.200475 GTCCATCTATACAACTACCGCTTTTC 59.800 42.308 0.00 0.00 0.00 2.29
2868 6573 5.175126 CCATCTATACAACTACCGCTTTTCG 59.825 44.000 0.00 0.00 38.08 3.46
2869 6574 5.565592 TCTATACAACTACCGCTTTTCGA 57.434 39.130 0.00 0.00 41.67 3.71
2870 6575 5.335127 TCTATACAACTACCGCTTTTCGAC 58.665 41.667 0.00 0.00 41.67 4.20
2871 6576 2.228138 ACAACTACCGCTTTTCGACA 57.772 45.000 0.00 0.00 41.67 4.35
2872 6577 2.132762 ACAACTACCGCTTTTCGACAG 58.867 47.619 0.00 0.00 41.67 3.51
2873 6578 2.223876 ACAACTACCGCTTTTCGACAGA 60.224 45.455 0.00 0.00 41.67 3.41
2874 6579 2.349297 ACTACCGCTTTTCGACAGAG 57.651 50.000 0.00 0.00 41.67 3.35
2875 6580 0.992802 CTACCGCTTTTCGACAGAGC 59.007 55.000 4.27 4.27 41.67 4.09
2876 6581 0.389426 TACCGCTTTTCGACAGAGCC 60.389 55.000 7.92 0.00 41.67 4.70
2877 6582 2.730672 CCGCTTTTCGACAGAGCCG 61.731 63.158 7.92 4.41 41.67 5.52
2878 6583 2.022129 CGCTTTTCGACAGAGCCGT 61.022 57.895 7.92 0.00 41.67 5.68
2879 6584 0.731514 CGCTTTTCGACAGAGCCGTA 60.732 55.000 7.92 0.00 41.67 4.02
2880 6585 0.992802 GCTTTTCGACAGAGCCGTAG 59.007 55.000 3.17 0.00 0.00 3.51
2881 6586 1.669211 GCTTTTCGACAGAGCCGTAGT 60.669 52.381 3.17 0.00 0.00 2.73
2882 6587 1.986378 CTTTTCGACAGAGCCGTAGTG 59.014 52.381 0.00 0.00 0.00 2.74
2883 6588 0.956633 TTTCGACAGAGCCGTAGTGT 59.043 50.000 0.00 0.00 0.00 3.55
2884 6589 0.520404 TTCGACAGAGCCGTAGTGTC 59.480 55.000 0.00 0.00 37.77 3.67
2885 6590 1.136984 CGACAGAGCCGTAGTGTCC 59.863 63.158 0.00 0.00 37.85 4.02
2886 6591 1.583495 CGACAGAGCCGTAGTGTCCA 61.583 60.000 0.00 0.00 37.85 4.02
2887 6592 0.818296 GACAGAGCCGTAGTGTCCAT 59.182 55.000 0.00 0.00 35.54 3.41
2888 6593 0.818296 ACAGAGCCGTAGTGTCCATC 59.182 55.000 0.00 0.00 0.00 3.51
2889 6594 1.107114 CAGAGCCGTAGTGTCCATCT 58.893 55.000 0.00 0.00 0.00 2.90
2890 6595 2.298610 CAGAGCCGTAGTGTCCATCTA 58.701 52.381 0.00 0.00 0.00 1.98
2891 6596 2.887783 CAGAGCCGTAGTGTCCATCTAT 59.112 50.000 0.00 0.00 0.00 1.98
2892 6597 4.072839 CAGAGCCGTAGTGTCCATCTATA 58.927 47.826 0.00 0.00 0.00 1.31
2893 6598 4.073549 AGAGCCGTAGTGTCCATCTATAC 58.926 47.826 0.00 0.00 0.00 1.47
2894 6599 3.819337 GAGCCGTAGTGTCCATCTATACA 59.181 47.826 0.00 0.00 0.00 2.29
2902 6607 7.441760 CGTAGTGTCCATCTATACAACTCTACT 59.558 40.741 0.00 0.00 35.96 2.57
2923 6628 5.816919 ACTGTTGTCTATTTGTCGGTTTTG 58.183 37.500 0.00 0.00 0.00 2.44
2937 6642 6.334202 TGTCGGTTTTGCTACATTTTCTTTT 58.666 32.000 0.00 0.00 0.00 2.27
2947 6652 7.417612 TGCTACATTTTCTTTTGTCAGACTTC 58.582 34.615 1.31 0.00 0.00 3.01
2948 6653 7.283127 TGCTACATTTTCTTTTGTCAGACTTCT 59.717 33.333 1.31 0.00 0.00 2.85
2950 6655 6.799512 ACATTTTCTTTTGTCAGACTTCTGG 58.200 36.000 6.40 0.00 43.91 3.86
2959 6664 2.872858 GTCAGACTTCTGGTGTTTGACC 59.127 50.000 6.40 0.00 46.37 4.02
2968 6673 0.040425 GGTGTTTGACCGTGTGCATC 60.040 55.000 0.00 0.00 34.02 3.91
2969 6674 0.660488 GTGTTTGACCGTGTGCATCA 59.340 50.000 0.00 0.00 0.00 3.07
2972 6677 3.058570 GTGTTTGACCGTGTGCATCATAA 60.059 43.478 0.00 0.00 0.00 1.90
3012 6717 9.744468 GGGTGTTATTCATAATGTTTTGTATCC 57.256 33.333 0.00 0.00 0.00 2.59
3026 6731 9.632638 ATGTTTTGTATCCTCTTAATGCTACAT 57.367 29.630 0.00 0.00 0.00 2.29
3045 6750 7.643764 TGCTACATTTTGAGATAATAAAAGCGC 59.356 33.333 0.00 0.00 0.00 5.92
3054 6759 8.389779 TGAGATAATAAAAGCGCCATTTATCA 57.610 30.769 21.92 15.82 33.09 2.15
3055 6760 8.845227 TGAGATAATAAAAGCGCCATTTATCAA 58.155 29.630 21.92 15.98 33.09 2.57
3064 6769 8.770438 AAAGCGCCATTTATCAAATAAAAAGA 57.230 26.923 2.29 0.00 38.15 2.52
3065 6770 8.770438 AAGCGCCATTTATCAAATAAAAAGAA 57.230 26.923 2.29 0.00 38.15 2.52
3066 6771 8.411318 AGCGCCATTTATCAAATAAAAAGAAG 57.589 30.769 2.29 0.00 38.15 2.85
3067 6772 8.250332 AGCGCCATTTATCAAATAAAAAGAAGA 58.750 29.630 2.29 0.00 38.15 2.87
3078 6783 7.121168 TCAAATAAAAAGAAGATCACAGGCGAT 59.879 33.333 0.00 0.00 0.00 4.58
3080 6785 5.712152 AAAAAGAAGATCACAGGCGATTT 57.288 34.783 0.00 0.00 0.00 2.17
3087 6792 5.854010 AGATCACAGGCGATTTAGAGTAA 57.146 39.130 0.00 0.00 0.00 2.24
3090 6795 5.339008 TCACAGGCGATTTAGAGTAACAT 57.661 39.130 0.00 0.00 0.00 2.71
3091 6796 5.348986 TCACAGGCGATTTAGAGTAACATC 58.651 41.667 0.00 0.00 0.00 3.06
3098 6803 6.074782 GGCGATTTAGAGTAACATCTTCTTCG 60.075 42.308 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.545588 GAGGCATACGCATATCATATGGAT 58.454 41.667 6.79 0.00 41.24 3.41
32 33 3.737774 CGAGGCATACGCATATCATATGG 59.262 47.826 6.79 0.00 41.24 2.74
33 34 3.737774 CCGAGGCATACGCATATCATATG 59.262 47.826 0.00 0.00 41.24 1.78
36 37 1.740380 GCCGAGGCATACGCATATCAT 60.740 52.381 9.58 0.00 41.24 2.45
37 38 0.389817 GCCGAGGCATACGCATATCA 60.390 55.000 9.58 0.00 41.24 2.15
38 39 1.413767 CGCCGAGGCATACGCATATC 61.414 60.000 15.03 0.00 42.06 1.63
120 126 4.283467 ACAACTAAGCAGATGTGGAGTGTA 59.717 41.667 0.00 0.00 36.52 2.90
126 132 3.935203 CCACTACAACTAAGCAGATGTGG 59.065 47.826 0.00 0.00 40.48 4.17
131 137 2.352421 GCGACCACTACAACTAAGCAGA 60.352 50.000 0.00 0.00 0.00 4.26
190 213 2.100128 ATCAGGACAGGAGGGAGATG 57.900 55.000 0.00 0.00 0.00 2.90
191 214 2.885388 AATCAGGACAGGAGGGAGAT 57.115 50.000 0.00 0.00 0.00 2.75
192 215 3.245984 TGTTAATCAGGACAGGAGGGAGA 60.246 47.826 0.00 0.00 0.00 3.71
193 216 3.107601 TGTTAATCAGGACAGGAGGGAG 58.892 50.000 0.00 0.00 0.00 4.30
194 217 3.199442 TGTTAATCAGGACAGGAGGGA 57.801 47.619 0.00 0.00 0.00 4.20
195 218 3.264450 AGTTGTTAATCAGGACAGGAGGG 59.736 47.826 0.00 0.00 0.00 4.30
202 231 9.884465 GCATAATTATGAGTTGTTAATCAGGAC 57.116 33.333 26.22 1.66 35.75 3.85
224 253 7.436970 TCGCTCGTTAGAATTTTATTCAGCATA 59.563 33.333 2.60 0.00 0.00 3.14
227 256 6.032722 TCGCTCGTTAGAATTTTATTCAGC 57.967 37.500 2.60 1.68 0.00 4.26
230 259 6.945072 ACCATCGCTCGTTAGAATTTTATTC 58.055 36.000 0.00 0.00 0.00 1.75
232 261 6.537301 TCAACCATCGCTCGTTAGAATTTTAT 59.463 34.615 0.00 0.00 0.00 1.40
235 264 4.250464 TCAACCATCGCTCGTTAGAATTT 58.750 39.130 0.00 0.00 0.00 1.82
238 267 2.490509 TCTCAACCATCGCTCGTTAGAA 59.509 45.455 0.00 0.00 0.00 2.10
240 269 2.186076 GTCTCAACCATCGCTCGTTAG 58.814 52.381 0.00 0.00 0.00 2.34
243 272 1.154016 CGTCTCAACCATCGCTCGT 60.154 57.895 0.00 0.00 0.00 4.18
244 273 0.732880 AACGTCTCAACCATCGCTCG 60.733 55.000 0.00 0.00 0.00 5.03
245 274 2.273370 TAACGTCTCAACCATCGCTC 57.727 50.000 0.00 0.00 0.00 5.03
246 275 2.094182 ACATAACGTCTCAACCATCGCT 60.094 45.455 0.00 0.00 0.00 4.93
273 304 1.146930 CGGTGGTGATGGGATCCTG 59.853 63.158 12.58 0.00 0.00 3.86
330 367 6.603201 TGGCTTAGAATAAAACCAAGGAGATG 59.397 38.462 0.00 0.00 0.00 2.90
333 370 5.163612 GCTGGCTTAGAATAAAACCAAGGAG 60.164 44.000 0.00 0.00 0.00 3.69
340 380 5.897377 TTCCTGCTGGCTTAGAATAAAAC 57.103 39.130 4.42 0.00 0.00 2.43
348 388 1.667724 CGACAATTCCTGCTGGCTTAG 59.332 52.381 4.42 0.00 0.00 2.18
356 396 1.079503 GTCTGACCGACAATTCCTGC 58.920 55.000 0.00 0.00 42.37 4.85
384 424 9.479278 GCTTTATCTTTCTTGTTCTTATTCGTC 57.521 33.333 0.00 0.00 0.00 4.20
466 507 1.511305 GCTGCTGTCTGTAGGCGTA 59.489 57.895 0.00 0.00 0.00 4.42
469 510 2.097038 CACGCTGCTGTCTGTAGGC 61.097 63.158 0.00 0.00 0.00 3.93
484 525 3.853330 CCGGAAGATGCACGCACG 61.853 66.667 0.00 0.00 0.00 5.34
488 529 3.257561 CTCGCCGGAAGATGCACG 61.258 66.667 5.05 0.00 0.00 5.34
510 4002 0.039617 GCGGTGCAATGCAAACTGTA 60.040 50.000 10.44 0.00 41.47 2.74
511 4003 1.300080 GCGGTGCAATGCAAACTGT 60.300 52.632 10.44 0.00 41.47 3.55
512 4004 2.366584 CGCGGTGCAATGCAAACTG 61.367 57.895 10.44 4.75 41.47 3.16
513 4005 2.050168 CGCGGTGCAATGCAAACT 60.050 55.556 10.44 0.00 41.47 2.66
514 4006 2.354539 ACGCGGTGCAATGCAAAC 60.355 55.556 10.44 5.20 41.47 2.93
515 4007 2.050533 GACGCGGTGCAATGCAAA 60.051 55.556 10.44 0.00 41.47 3.68
517 4009 2.139888 ATTTGACGCGGTGCAATGCA 62.140 50.000 12.47 2.72 35.60 3.96
519 4011 0.109827 TGATTTGACGCGGTGCAATG 60.110 50.000 12.47 0.00 0.00 2.82
520 4012 0.168788 CTGATTTGACGCGGTGCAAT 59.831 50.000 12.47 2.63 0.00 3.56
530 4022 3.244976 CGGCATTTCAACCTGATTTGAC 58.755 45.455 0.00 0.00 35.18 3.18
531 4023 2.352617 GCGGCATTTCAACCTGATTTGA 60.353 45.455 0.00 0.00 33.55 2.69
536 4028 0.825425 TTGGCGGCATTTCAACCTGA 60.825 50.000 14.32 0.00 0.00 3.86
539 4031 1.807139 ATTTTGGCGGCATTTCAACC 58.193 45.000 14.32 0.00 0.00 3.77
559 4092 6.096141 ACAACAACTAATCAAACACACATGGA 59.904 34.615 0.00 0.00 0.00 3.41
565 4098 6.195868 CGCTAACAACAACTAATCAAACACA 58.804 36.000 0.00 0.00 0.00 3.72
566 4099 5.623673 CCGCTAACAACAACTAATCAAACAC 59.376 40.000 0.00 0.00 0.00 3.32
567 4100 5.753744 CCGCTAACAACAACTAATCAAACA 58.246 37.500 0.00 0.00 0.00 2.83
568 4101 4.615541 GCCGCTAACAACAACTAATCAAAC 59.384 41.667 0.00 0.00 0.00 2.93
588 4121 3.983344 GGCTAAATTATTGCTTGATGCCG 59.017 43.478 0.00 0.00 42.00 5.69
597 4130 7.166473 CGAAATCACAAGAGGCTAAATTATTGC 59.834 37.037 0.00 0.00 0.00 3.56
615 4148 5.460646 ACACATCATCAAAACCGAAATCAC 58.539 37.500 0.00 0.00 0.00 3.06
771 4313 2.974698 GCAATGGCGGATCGGAGG 60.975 66.667 4.16 0.00 0.00 4.30
772 4314 2.974698 GGCAATGGCGGATCGGAG 60.975 66.667 4.16 0.00 42.47 4.63
773 4315 3.460672 GAGGCAATGGCGGATCGGA 62.461 63.158 4.16 0.00 42.47 4.55
820 4362 1.207593 CGACAGGAAAAGCAAGCCG 59.792 57.895 0.00 0.00 0.00 5.52
823 4365 2.781945 AAAGCGACAGGAAAAGCAAG 57.218 45.000 0.00 0.00 0.00 4.01
824 4366 3.211045 ACTAAAGCGACAGGAAAAGCAA 58.789 40.909 0.00 0.00 0.00 3.91
828 4374 2.409975 CCGACTAAAGCGACAGGAAAA 58.590 47.619 0.00 0.00 0.00 2.29
834 4380 0.389426 GGAAGCCGACTAAAGCGACA 60.389 55.000 0.00 0.00 0.00 4.35
849 4396 2.328099 GCAGAACAGTGGCGGGAAG 61.328 63.158 0.00 0.00 0.00 3.46
869 4418 2.083835 TAGCTTATCACGCCGAGGCC 62.084 60.000 8.72 0.00 37.98 5.19
873 4422 1.535896 CTAGCTAGCTTATCACGCCGA 59.464 52.381 24.88 0.00 0.00 5.54
874 4423 1.970447 CTAGCTAGCTTATCACGCCG 58.030 55.000 24.88 0.00 0.00 6.46
875 4424 1.704070 GCTAGCTAGCTTATCACGCC 58.296 55.000 33.71 5.30 45.62 5.68
886 4435 5.465724 CCGTAAATTAAAGGTGGCTAGCTAG 59.534 44.000 16.84 16.84 33.49 3.42
887 4436 5.362263 CCGTAAATTAAAGGTGGCTAGCTA 58.638 41.667 15.72 5.44 33.49 3.32
888 4437 4.196971 CCGTAAATTAAAGGTGGCTAGCT 58.803 43.478 15.72 0.00 35.86 3.32
889 4438 3.242969 GCCGTAAATTAAAGGTGGCTAGC 60.243 47.826 6.04 6.04 38.00 3.42
890 4439 4.547406 GCCGTAAATTAAAGGTGGCTAG 57.453 45.455 0.00 0.00 38.00 3.42
1589 5156 0.320683 GCCCAGCAAAATCAACCACC 60.321 55.000 0.00 0.00 0.00 4.61
1596 5163 0.244721 GACACCTGCCCAGCAAAATC 59.755 55.000 0.00 0.00 38.41 2.17
1751 5318 3.872603 ACCCGCTTCACCTGCACA 61.873 61.111 0.00 0.00 0.00 4.57
2000 5576 4.131088 GAGGAGGACGTGGTCGGC 62.131 72.222 0.00 0.00 45.48 5.54
2012 5588 1.687493 GGTGGTGGAGGAGGAGGAG 60.687 68.421 0.00 0.00 0.00 3.69
2104 5683 3.245518 TGCTTCTGAAATTCGATCCGA 57.754 42.857 0.00 0.00 0.00 4.55
2144 5772 3.129287 AGACATGGCCGAAATTCAATCAC 59.871 43.478 0.00 0.00 0.00 3.06
2154 5782 2.092968 AGCTAATCAAGACATGGCCGAA 60.093 45.455 0.00 0.00 0.00 4.30
2155 5783 1.486310 AGCTAATCAAGACATGGCCGA 59.514 47.619 0.00 0.00 0.00 5.54
2156 5784 1.869767 GAGCTAATCAAGACATGGCCG 59.130 52.381 0.00 0.00 0.00 6.13
2157 5785 2.923121 TGAGCTAATCAAGACATGGCC 58.077 47.619 0.00 0.00 34.02 5.36
2158 5786 4.132336 TGATGAGCTAATCAAGACATGGC 58.868 43.478 11.67 0.00 42.53 4.40
2166 5800 4.517832 GTGCCATGATGATGAGCTAATCAA 59.482 41.667 17.97 2.76 42.53 2.57
2213 5847 1.680207 TCTCTCTGACATGGCGATGAG 59.320 52.381 16.26 9.06 33.36 2.90
2219 5853 0.901124 ACACCTCTCTCTGACATGGC 59.099 55.000 0.00 0.00 0.00 4.40
2285 5922 0.930310 ATTTGATGATGACGGACGCG 59.070 50.000 3.53 3.53 0.00 6.01
2304 5941 8.621532 AAAGAATTTGTAGCAGTATCAGACAA 57.378 30.769 0.00 0.00 36.60 3.18
2439 6087 1.153168 GGACGGACATGGACATGGG 60.153 63.158 15.94 7.72 42.91 4.00
2454 6102 0.892755 TACCGACAGTCACCATGGAC 59.107 55.000 21.47 7.18 38.08 4.02
2663 6353 0.106521 GCTCTGAATGAGGAGGAGCC 59.893 60.000 0.00 0.00 42.20 4.70
2690 6385 4.964262 ACAACCCTCCATTATTCATGCATT 59.036 37.500 0.00 0.00 0.00 3.56
2710 6405 3.522731 GCGCACCACCACCAACAA 61.523 61.111 0.30 0.00 0.00 2.83
2787 6485 3.440173 GTGTGTGATGAACGGAATGGAAT 59.560 43.478 0.00 0.00 0.00 3.01
2797 6495 2.805671 TGGTGAATCGTGTGTGATGAAC 59.194 45.455 0.00 0.00 0.00 3.18
2799 6497 2.412870 GTGGTGAATCGTGTGTGATGA 58.587 47.619 0.00 0.00 0.00 2.92
2807 6512 0.591170 AAAAGCGGTGGTGAATCGTG 59.409 50.000 0.00 0.00 0.00 4.35
2818 6523 1.668151 GCCTCTGTCGAAAAGCGGT 60.668 57.895 7.12 0.00 41.33 5.68
2826 6531 1.103803 GGACACTATGCCTCTGTCGA 58.896 55.000 0.00 0.00 36.03 4.20
2833 6538 5.841237 AGTTGTATAGATGGACACTATGCCT 59.159 40.000 0.00 0.00 33.97 4.75
2839 6544 4.037684 GCGGTAGTTGTATAGATGGACACT 59.962 45.833 0.00 0.00 0.00 3.55
2845 6550 5.975344 TCGAAAAGCGGTAGTTGTATAGATG 59.025 40.000 0.00 0.00 41.33 2.90
2846 6551 5.975939 GTCGAAAAGCGGTAGTTGTATAGAT 59.024 40.000 0.00 0.00 41.33 1.98
2847 6552 5.106197 TGTCGAAAAGCGGTAGTTGTATAGA 60.106 40.000 0.00 0.00 41.33 1.98
2848 6553 5.097529 TGTCGAAAAGCGGTAGTTGTATAG 58.902 41.667 0.00 0.00 41.33 1.31
2849 6554 5.058149 TGTCGAAAAGCGGTAGTTGTATA 57.942 39.130 0.00 0.00 41.33 1.47
2850 6555 3.916761 TGTCGAAAAGCGGTAGTTGTAT 58.083 40.909 0.00 0.00 41.33 2.29
2851 6556 3.004629 TCTGTCGAAAAGCGGTAGTTGTA 59.995 43.478 0.00 0.00 41.33 2.41
2852 6557 2.132762 CTGTCGAAAAGCGGTAGTTGT 58.867 47.619 0.00 0.00 41.33 3.32
2853 6558 2.400399 TCTGTCGAAAAGCGGTAGTTG 58.600 47.619 0.00 0.00 41.33 3.16
2854 6559 2.673833 CTCTGTCGAAAAGCGGTAGTT 58.326 47.619 0.00 0.00 41.33 2.24
2855 6560 1.669211 GCTCTGTCGAAAAGCGGTAGT 60.669 52.381 0.00 0.00 41.33 2.73
2856 6561 0.992802 GCTCTGTCGAAAAGCGGTAG 59.007 55.000 0.00 0.00 41.33 3.18
2857 6562 0.389426 GGCTCTGTCGAAAAGCGGTA 60.389 55.000 8.36 0.00 41.33 4.02
2858 6563 1.668151 GGCTCTGTCGAAAAGCGGT 60.668 57.895 8.36 0.00 41.33 5.68
2859 6564 2.730672 CGGCTCTGTCGAAAAGCGG 61.731 63.158 8.36 8.02 41.33 5.52
2860 6565 0.731514 TACGGCTCTGTCGAAAAGCG 60.732 55.000 0.00 6.91 42.69 4.68
2861 6566 0.992802 CTACGGCTCTGTCGAAAAGC 59.007 55.000 0.00 6.43 33.65 3.51
2862 6567 1.986378 CACTACGGCTCTGTCGAAAAG 59.014 52.381 0.00 0.00 33.65 2.27
2863 6568 1.338973 ACACTACGGCTCTGTCGAAAA 59.661 47.619 0.00 0.00 33.65 2.29
2864 6569 0.956633 ACACTACGGCTCTGTCGAAA 59.043 50.000 0.00 0.00 33.65 3.46
2865 6570 0.520404 GACACTACGGCTCTGTCGAA 59.480 55.000 0.00 0.00 33.65 3.71
2866 6571 1.303799 GGACACTACGGCTCTGTCGA 61.304 60.000 0.00 0.00 36.03 4.20
2867 6572 1.136984 GGACACTACGGCTCTGTCG 59.863 63.158 0.00 0.00 36.03 4.35
2868 6573 0.818296 ATGGACACTACGGCTCTGTC 59.182 55.000 0.00 0.00 34.68 3.51
2869 6574 0.818296 GATGGACACTACGGCTCTGT 59.182 55.000 0.00 0.00 0.00 3.41
2870 6575 1.107114 AGATGGACACTACGGCTCTG 58.893 55.000 0.00 0.00 0.00 3.35
2871 6576 2.730934 TAGATGGACACTACGGCTCT 57.269 50.000 0.00 0.00 0.00 4.09
2872 6577 3.819337 TGTATAGATGGACACTACGGCTC 59.181 47.826 0.00 0.00 0.00 4.70
2873 6578 3.828921 TGTATAGATGGACACTACGGCT 58.171 45.455 0.00 0.00 0.00 5.52
2874 6579 4.037684 AGTTGTATAGATGGACACTACGGC 59.962 45.833 0.00 0.00 0.00 5.68
2875 6580 5.531659 AGAGTTGTATAGATGGACACTACGG 59.468 44.000 0.00 0.00 0.00 4.02
2876 6581 6.621316 AGAGTTGTATAGATGGACACTACG 57.379 41.667 0.00 0.00 0.00 3.51
2877 6582 8.561212 CAGTAGAGTTGTATAGATGGACACTAC 58.439 40.741 0.00 0.00 35.81 2.73
2878 6583 8.272889 ACAGTAGAGTTGTATAGATGGACACTA 58.727 37.037 0.00 0.00 0.00 2.74
2879 6584 7.120051 ACAGTAGAGTTGTATAGATGGACACT 58.880 38.462 0.00 0.00 0.00 3.55
2880 6585 7.336161 ACAGTAGAGTTGTATAGATGGACAC 57.664 40.000 0.00 0.00 0.00 3.67
2881 6586 7.772166 CAACAGTAGAGTTGTATAGATGGACA 58.228 38.462 0.00 0.00 42.93 4.02
2894 6599 6.157211 CCGACAAATAGACAACAGTAGAGTT 58.843 40.000 0.00 0.00 0.00 3.01
2902 6607 4.336993 AGCAAAACCGACAAATAGACAACA 59.663 37.500 0.00 0.00 0.00 3.33
2906 6611 5.600908 TGTAGCAAAACCGACAAATAGAC 57.399 39.130 0.00 0.00 0.00 2.59
2907 6612 6.811253 AATGTAGCAAAACCGACAAATAGA 57.189 33.333 0.00 0.00 0.00 1.98
2909 6614 7.653647 AGAAAATGTAGCAAAACCGACAAATA 58.346 30.769 0.00 0.00 0.00 1.40
2923 6628 7.589221 CAGAAGTCTGACAAAAGAAAATGTAGC 59.411 37.037 10.88 0.00 46.59 3.58
2937 6642 3.531538 GTCAAACACCAGAAGTCTGACA 58.468 45.455 10.88 0.00 46.59 3.58
2950 6655 0.660488 TGATGCACACGGTCAAACAC 59.340 50.000 0.00 0.00 0.00 3.32
2968 6673 1.086696 CCGGCCTCCGCATAATTATG 58.913 55.000 19.29 19.29 46.86 1.90
2969 6674 0.035439 CCCGGCCTCCGCATAATTAT 60.035 55.000 0.00 0.00 46.86 1.28
2972 6677 3.168528 ACCCGGCCTCCGCATAAT 61.169 61.111 0.00 0.00 46.86 1.28
2979 6684 0.182775 ATGAATAACACCCGGCCTCC 59.817 55.000 0.00 0.00 0.00 4.30
3018 6723 9.669353 CGCTTTTATTATCTCAAAATGTAGCAT 57.331 29.630 0.00 0.00 0.00 3.79
3030 6735 9.677567 TTTGATAAATGGCGCTTTTATTATCTC 57.322 29.630 21.44 13.95 33.22 2.75
3054 6759 6.817765 TCGCCTGTGATCTTCTTTTTATTT 57.182 33.333 0.00 0.00 0.00 1.40
3055 6760 7.396540 AATCGCCTGTGATCTTCTTTTTATT 57.603 32.000 0.00 0.00 0.00 1.40
3057 6762 6.817765 AAATCGCCTGTGATCTTCTTTTTA 57.182 33.333 0.00 0.00 0.00 1.52
3063 6768 4.688021 ACTCTAAATCGCCTGTGATCTTC 58.312 43.478 0.00 0.00 0.00 2.87
3064 6769 4.744795 ACTCTAAATCGCCTGTGATCTT 57.255 40.909 0.00 0.00 0.00 2.40
3065 6770 5.127194 TGTTACTCTAAATCGCCTGTGATCT 59.873 40.000 0.00 0.00 0.00 2.75
3066 6771 5.348986 TGTTACTCTAAATCGCCTGTGATC 58.651 41.667 0.00 0.00 0.00 2.92
3067 6772 5.339008 TGTTACTCTAAATCGCCTGTGAT 57.661 39.130 0.00 0.00 0.00 3.06
3074 6779 6.074782 CCGAAGAAGATGTTACTCTAAATCGC 60.075 42.308 0.00 0.00 0.00 4.58
3078 6783 6.395629 CACCCGAAGAAGATGTTACTCTAAA 58.604 40.000 0.00 0.00 0.00 1.85
3080 6785 5.578005 CACCCGAAGAAGATGTTACTCTA 57.422 43.478 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.