Multiple sequence alignment - TraesCS7D01G050100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G050100 chr7D 100.000 5019 0 0 1 5019 25525822 25520804 0.000000e+00 9269.0
1 TraesCS7D01G050100 chr7D 98.514 875 10 2 4146 5019 617354320 617355192 0.000000e+00 1541.0
2 TraesCS7D01G050100 chr7D 96.685 181 4 2 4146 4326 566228778 566228956 2.940000e-77 300.0
3 TraesCS7D01G050100 chr7D 96.154 182 5 2 4146 4326 61950010 61949830 3.800000e-76 296.0
4 TraesCS7D01G050100 chr7D 95.109 184 5 4 4146 4326 76914615 76914797 2.290000e-73 287.0
5 TraesCS7D01G050100 chr7D 96.894 161 5 0 4134 4294 95088813 95088653 2.300000e-68 270.0
6 TraesCS7D01G050100 chr7D 81.967 122 17 5 546 663 575901931 575901811 1.150000e-16 99.0
7 TraesCS7D01G050100 chr7D 77.686 121 24 2 546 663 64544739 64544619 2.510000e-08 71.3
8 TraesCS7D01G050100 chr4A 95.856 3740 101 25 427 4133 709980244 709976526 0.000000e+00 5999.0
9 TraesCS7D01G050100 chr4A 91.579 95 6 1 23 115 709994595 709994501 4.080000e-26 130.0
10 TraesCS7D01G050100 chr7A 97.295 3401 61 10 740 4133 26451369 26447993 0.000000e+00 5742.0
11 TraesCS7D01G050100 chr7A 83.871 124 14 4 546 663 642107374 642107251 4.110000e-21 113.0
12 TraesCS7D01G050100 chr5D 99.615 780 3 0 4240 5019 519890084 519890863 0.000000e+00 1424.0
13 TraesCS7D01G050100 chr5D 78.177 779 150 18 2816 3587 425840604 425841369 3.510000e-131 479.0
14 TraesCS7D01G050100 chr5D 82.474 97 11 3 572 663 355464087 355463992 4.170000e-11 80.5
15 TraesCS7D01G050100 chr4D 99.615 780 3 0 4240 5019 314619005 314618226 0.000000e+00 1424.0
16 TraesCS7D01G050100 chr4D 77.081 781 156 20 2816 3586 630233 631000 3.590000e-116 429.0
17 TraesCS7D01G050100 chr4D 96.933 163 3 2 4134 4294 2016872 2016710 6.400000e-69 272.0
18 TraesCS7D01G050100 chr4D 82.935 293 36 13 2865 3150 497666784 497667069 8.340000e-63 252.0
19 TraesCS7D01G050100 chr4D 76.484 438 83 20 3160 3587 497667106 497667533 2.350000e-53 220.0
20 TraesCS7D01G050100 chr3D 99.615 780 3 0 4240 5019 614113863 614113084 0.000000e+00 1424.0
21 TraesCS7D01G050100 chr3D 78.471 785 147 15 2816 3589 159786675 159785902 1.260000e-135 494.0
22 TraesCS7D01G050100 chr3D 94.709 189 8 2 4146 4332 10714283 10714095 4.910000e-75 292.0
23 TraesCS7D01G050100 chr3D 84.043 94 10 5 507 598 434068109 434068019 8.950000e-13 86.1
24 TraesCS7D01G050100 chr2D 99.615 780 3 0 4240 5019 636635648 636634869 0.000000e+00 1424.0
25 TraesCS7D01G050100 chr1D 99.615 780 3 0 4240 5019 457154751 457155530 0.000000e+00 1424.0
26 TraesCS7D01G050100 chr1D 96.894 161 5 0 4134 4294 464020295 464020455 2.300000e-68 270.0
27 TraesCS7D01G050100 chr6D 99.487 780 4 0 4240 5019 10625374 10626153 0.000000e+00 1419.0
28 TraesCS7D01G050100 chr6D 99.487 780 4 0 4240 5019 15164089 15163310 0.000000e+00 1419.0
29 TraesCS7D01G050100 chr6D 99.487 780 4 0 4240 5019 364219412 364218633 0.000000e+00 1419.0
30 TraesCS7D01G050100 chr6D 97.468 158 3 1 4134 4291 23772856 23773012 8.280000e-68 268.0
31 TraesCS7D01G050100 chr6D 97.297 37 1 0 573 609 449217014 449216978 4.190000e-06 63.9
32 TraesCS7D01G050100 chr3B 79.236 785 141 15 2816 3589 236496339 236495566 1.240000e-145 527.0
33 TraesCS7D01G050100 chr5B 78.718 780 144 19 2816 3587 515185775 515186540 7.500000e-138 501.0
34 TraesCS7D01G050100 chr3A 78.599 785 146 14 2816 3589 186041028 186040255 2.700000e-137 499.0
35 TraesCS7D01G050100 chr5A 78.149 778 152 15 2816 3587 540053662 540054427 3.510000e-131 479.0
36 TraesCS7D01G050100 chr5A 82.007 289 46 6 2865 3150 678083107 678082822 1.810000e-59 241.0
37 TraesCS7D01G050100 chr4B 77.337 781 154 20 2816 3586 1244490 1243723 1.660000e-119 440.0
38 TraesCS7D01G050100 chr7B 80.000 120 19 4 548 663 72052327 72052445 3.220000e-12 84.2
39 TraesCS7D01G050100 chr7B 80.392 102 15 4 558 655 521149063 521149163 6.970000e-09 73.1
40 TraesCS7D01G050100 chr1A 77.692 130 23 4 537 662 258745073 258745200 1.940000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G050100 chr7D 25520804 25525822 5018 True 9269 9269 100.0000 1 5019 1 chr7D.!!$R1 5018
1 TraesCS7D01G050100 chr7D 617354320 617355192 872 False 1541 1541 98.5140 4146 5019 1 chr7D.!!$F3 873
2 TraesCS7D01G050100 chr4A 709976526 709980244 3718 True 5999 5999 95.8560 427 4133 1 chr4A.!!$R1 3706
3 TraesCS7D01G050100 chr7A 26447993 26451369 3376 True 5742 5742 97.2950 740 4133 1 chr7A.!!$R1 3393
4 TraesCS7D01G050100 chr5D 519890084 519890863 779 False 1424 1424 99.6150 4240 5019 1 chr5D.!!$F2 779
5 TraesCS7D01G050100 chr5D 425840604 425841369 765 False 479 479 78.1770 2816 3587 1 chr5D.!!$F1 771
6 TraesCS7D01G050100 chr4D 314618226 314619005 779 True 1424 1424 99.6150 4240 5019 1 chr4D.!!$R2 779
7 TraesCS7D01G050100 chr4D 630233 631000 767 False 429 429 77.0810 2816 3586 1 chr4D.!!$F1 770
8 TraesCS7D01G050100 chr4D 497666784 497667533 749 False 236 252 79.7095 2865 3587 2 chr4D.!!$F2 722
9 TraesCS7D01G050100 chr3D 614113084 614113863 779 True 1424 1424 99.6150 4240 5019 1 chr3D.!!$R4 779
10 TraesCS7D01G050100 chr3D 159785902 159786675 773 True 494 494 78.4710 2816 3589 1 chr3D.!!$R2 773
11 TraesCS7D01G050100 chr2D 636634869 636635648 779 True 1424 1424 99.6150 4240 5019 1 chr2D.!!$R1 779
12 TraesCS7D01G050100 chr1D 457154751 457155530 779 False 1424 1424 99.6150 4240 5019 1 chr1D.!!$F1 779
13 TraesCS7D01G050100 chr6D 10625374 10626153 779 False 1419 1419 99.4870 4240 5019 1 chr6D.!!$F1 779
14 TraesCS7D01G050100 chr6D 15163310 15164089 779 True 1419 1419 99.4870 4240 5019 1 chr6D.!!$R1 779
15 TraesCS7D01G050100 chr6D 364218633 364219412 779 True 1419 1419 99.4870 4240 5019 1 chr6D.!!$R2 779
16 TraesCS7D01G050100 chr3B 236495566 236496339 773 True 527 527 79.2360 2816 3589 1 chr3B.!!$R1 773
17 TraesCS7D01G050100 chr5B 515185775 515186540 765 False 501 501 78.7180 2816 3587 1 chr5B.!!$F1 771
18 TraesCS7D01G050100 chr3A 186040255 186041028 773 True 499 499 78.5990 2816 3589 1 chr3A.!!$R1 773
19 TraesCS7D01G050100 chr5A 540053662 540054427 765 False 479 479 78.1490 2816 3587 1 chr5A.!!$F1 771
20 TraesCS7D01G050100 chr4B 1243723 1244490 767 True 440 440 77.3370 2816 3586 1 chr4B.!!$R1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.103572 GCATCATGCCATGTGAACCC 59.896 55.000 4.31 0.00 37.42 4.11 F
668 679 0.315251 TCGACTGAGACTTGCAGTGG 59.685 55.000 0.00 0.00 45.94 4.00 F
677 688 0.536006 ACTTGCAGTGGAGTCCTTGC 60.536 55.000 24.03 24.03 36.12 4.01 F
678 689 1.228245 TTGCAGTGGAGTCCTTGCC 60.228 57.895 26.24 14.71 35.23 4.52 F
1940 1955 1.674651 CAGTGGGAGGACGACGAGA 60.675 63.158 0.00 0.00 32.45 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 1648 0.036010 AGCCATGGAGAAGGACGTTG 60.036 55.000 18.40 0.0 0.00 4.10 R
2314 2329 1.138069 ACGTCGATGATAATGTGGCCA 59.862 47.619 12.58 0.0 0.00 5.36 R
2797 2815 1.314867 GATCCTGGACCCCTCCTCA 59.685 63.158 0.00 0.0 37.48 3.86 R
3106 3124 2.762043 TCGCGGTGGATGATCCCA 60.762 61.111 9.36 0.0 35.03 4.37 R
4151 4220 0.179015 TTGCACAGCCGGGACTAAAA 60.179 50.000 2.18 0.0 0.00 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.654178 GCATCATGCCATGTGAACC 57.346 52.632 4.31 0.00 37.42 3.62
23 24 0.103572 GCATCATGCCATGTGAACCC 59.896 55.000 4.31 0.00 37.42 4.11
24 25 1.476477 CATCATGCCATGTGAACCCA 58.524 50.000 4.31 0.00 0.00 4.51
25 26 1.826096 CATCATGCCATGTGAACCCAA 59.174 47.619 4.31 0.00 0.00 4.12
26 27 1.255882 TCATGCCATGTGAACCCAAC 58.744 50.000 4.31 0.00 0.00 3.77
27 28 1.203038 TCATGCCATGTGAACCCAACT 60.203 47.619 4.31 0.00 0.00 3.16
28 29 2.040947 TCATGCCATGTGAACCCAACTA 59.959 45.455 4.31 0.00 0.00 2.24
29 30 2.897271 TGCCATGTGAACCCAACTAT 57.103 45.000 0.00 0.00 0.00 2.12
30 31 2.722094 TGCCATGTGAACCCAACTATC 58.278 47.619 0.00 0.00 0.00 2.08
31 32 2.040947 TGCCATGTGAACCCAACTATCA 59.959 45.455 0.00 0.00 0.00 2.15
32 33 3.290710 GCCATGTGAACCCAACTATCAT 58.709 45.455 0.00 0.00 0.00 2.45
33 34 3.316308 GCCATGTGAACCCAACTATCATC 59.684 47.826 0.00 0.00 0.00 2.92
34 35 4.525996 CCATGTGAACCCAACTATCATCA 58.474 43.478 0.00 0.00 0.00 3.07
35 36 4.336433 CCATGTGAACCCAACTATCATCAC 59.664 45.833 0.00 0.00 38.08 3.06
36 37 4.632327 TGTGAACCCAACTATCATCACA 57.368 40.909 2.54 2.54 43.31 3.58
37 38 4.979335 TGTGAACCCAACTATCATCACAA 58.021 39.130 4.11 0.00 42.78 3.33
38 39 5.003160 TGTGAACCCAACTATCATCACAAG 58.997 41.667 4.11 0.00 42.78 3.16
39 40 5.003804 GTGAACCCAACTATCATCACAAGT 58.996 41.667 0.00 0.00 37.65 3.16
40 41 5.473504 GTGAACCCAACTATCATCACAAGTT 59.526 40.000 0.00 0.00 37.65 2.66
41 42 5.473162 TGAACCCAACTATCATCACAAGTTG 59.527 40.000 0.00 0.00 46.18 3.16
42 43 4.985538 ACCCAACTATCATCACAAGTTGT 58.014 39.130 1.64 1.64 45.51 3.32
43 44 6.121776 ACCCAACTATCATCACAAGTTGTA 57.878 37.500 8.49 0.00 45.51 2.41
44 45 6.539173 ACCCAACTATCATCACAAGTTGTAA 58.461 36.000 8.49 0.00 45.51 2.41
45 46 7.175104 ACCCAACTATCATCACAAGTTGTAAT 58.825 34.615 8.49 0.00 45.51 1.89
46 47 7.669722 ACCCAACTATCATCACAAGTTGTAATT 59.330 33.333 8.49 0.00 45.51 1.40
47 48 8.522830 CCCAACTATCATCACAAGTTGTAATTT 58.477 33.333 8.49 0.00 45.51 1.82
48 49 9.912634 CCAACTATCATCACAAGTTGTAATTTT 57.087 29.630 8.49 0.00 45.51 1.82
68 69 8.652810 AATTTTCAGATTAATTGCTATGTGGC 57.347 30.769 0.00 0.00 0.00 5.01
69 70 6.772360 TTTCAGATTAATTGCTATGTGGCA 57.228 33.333 0.00 0.00 40.74 4.92
70 71 5.756195 TCAGATTAATTGCTATGTGGCAC 57.244 39.130 11.55 11.55 42.27 5.01
71 72 4.580167 TCAGATTAATTGCTATGTGGCACC 59.420 41.667 16.26 0.00 42.27 5.01
72 73 4.338964 CAGATTAATTGCTATGTGGCACCA 59.661 41.667 16.26 2.32 42.27 4.17
73 74 5.010314 CAGATTAATTGCTATGTGGCACCAT 59.990 40.000 16.26 11.06 42.27 3.55
74 75 4.652421 TTAATTGCTATGTGGCACCATG 57.348 40.909 16.26 5.85 42.27 3.66
75 76 0.748450 ATTGCTATGTGGCACCATGC 59.252 50.000 16.26 15.83 42.27 4.06
76 77 1.655885 TTGCTATGTGGCACCATGCG 61.656 55.000 16.26 6.11 46.21 4.73
77 78 1.819208 GCTATGTGGCACCATGCGA 60.819 57.895 16.26 0.00 46.21 5.10
78 79 1.168407 GCTATGTGGCACCATGCGAT 61.168 55.000 16.26 3.01 46.21 4.58
79 80 1.311859 CTATGTGGCACCATGCGATT 58.688 50.000 16.26 0.00 46.21 3.34
80 81 1.265095 CTATGTGGCACCATGCGATTC 59.735 52.381 16.26 0.00 46.21 2.52
81 82 0.680601 ATGTGGCACCATGCGATTCA 60.681 50.000 16.26 0.00 46.21 2.57
82 83 1.307355 TGTGGCACCATGCGATTCAG 61.307 55.000 16.26 0.00 46.21 3.02
83 84 1.750018 TGGCACCATGCGATTCAGG 60.750 57.895 0.00 0.00 46.21 3.86
84 85 2.410469 GCACCATGCGATTCAGGC 59.590 61.111 0.00 0.00 31.71 4.85
85 86 2.409055 GCACCATGCGATTCAGGCA 61.409 57.895 0.00 0.00 45.71 4.75
86 87 1.936436 GCACCATGCGATTCAGGCAA 61.936 55.000 0.00 0.00 44.66 4.52
87 88 0.527113 CACCATGCGATTCAGGCAAA 59.473 50.000 0.00 0.00 44.66 3.68
88 89 1.067706 CACCATGCGATTCAGGCAAAA 60.068 47.619 0.00 0.00 44.66 2.44
89 90 1.617850 ACCATGCGATTCAGGCAAAAA 59.382 42.857 0.00 0.00 44.66 1.94
111 112 7.760131 AAAATTCAAATCGATTGCTATGTGG 57.240 32.000 12.25 0.00 38.98 4.17
112 113 6.455360 AATTCAAATCGATTGCTATGTGGT 57.545 33.333 12.25 0.00 38.98 4.16
113 114 7.566760 AATTCAAATCGATTGCTATGTGGTA 57.433 32.000 12.25 0.00 38.98 3.25
114 115 7.750229 ATTCAAATCGATTGCTATGTGGTAT 57.250 32.000 12.25 0.66 38.98 2.73
115 116 6.544038 TCAAATCGATTGCTATGTGGTATG 57.456 37.500 12.25 1.60 38.98 2.39
116 117 6.054941 TCAAATCGATTGCTATGTGGTATGT 58.945 36.000 12.25 0.00 38.98 2.29
117 118 6.202762 TCAAATCGATTGCTATGTGGTATGTC 59.797 38.462 12.25 0.00 38.98 3.06
118 119 3.990092 TCGATTGCTATGTGGTATGTCC 58.010 45.455 0.00 0.00 0.00 4.02
119 120 2.731451 CGATTGCTATGTGGTATGTCCG 59.269 50.000 0.00 0.00 39.52 4.79
120 121 3.728845 GATTGCTATGTGGTATGTCCGT 58.271 45.455 0.00 0.00 39.52 4.69
121 122 4.557895 CGATTGCTATGTGGTATGTCCGTA 60.558 45.833 0.00 0.00 39.52 4.02
122 123 4.948341 TTGCTATGTGGTATGTCCGTAT 57.052 40.909 0.00 0.00 39.52 3.06
123 124 4.251543 TGCTATGTGGTATGTCCGTATG 57.748 45.455 0.00 0.00 39.52 2.39
124 125 3.639561 TGCTATGTGGTATGTCCGTATGT 59.360 43.478 0.00 0.00 39.52 2.29
125 126 3.987868 GCTATGTGGTATGTCCGTATGTG 59.012 47.826 0.00 0.00 39.52 3.21
126 127 2.971660 TGTGGTATGTCCGTATGTGG 57.028 50.000 0.00 0.00 39.52 4.17
127 128 1.483004 TGTGGTATGTCCGTATGTGGG 59.517 52.381 0.00 0.00 39.52 4.61
128 129 1.758280 GTGGTATGTCCGTATGTGGGA 59.242 52.381 0.00 0.00 39.52 4.37
129 130 2.036387 TGGTATGTCCGTATGTGGGAG 58.964 52.381 0.00 0.00 39.52 4.30
130 131 2.313317 GGTATGTCCGTATGTGGGAGA 58.687 52.381 0.00 0.00 33.31 3.71
131 132 2.296471 GGTATGTCCGTATGTGGGAGAG 59.704 54.545 0.00 0.00 33.31 3.20
132 133 2.160721 ATGTCCGTATGTGGGAGAGT 57.839 50.000 0.00 0.00 33.31 3.24
133 134 2.812836 TGTCCGTATGTGGGAGAGTA 57.187 50.000 0.00 0.00 33.31 2.59
134 135 2.372264 TGTCCGTATGTGGGAGAGTAC 58.628 52.381 0.00 0.00 33.31 2.73
135 136 2.291089 TGTCCGTATGTGGGAGAGTACA 60.291 50.000 0.00 0.00 33.31 2.90
136 137 2.756760 GTCCGTATGTGGGAGAGTACAA 59.243 50.000 0.00 0.00 33.31 2.41
137 138 3.194116 GTCCGTATGTGGGAGAGTACAAA 59.806 47.826 0.00 0.00 33.31 2.83
138 139 4.028131 TCCGTATGTGGGAGAGTACAAAT 58.972 43.478 0.00 0.00 0.00 2.32
139 140 4.119862 CCGTATGTGGGAGAGTACAAATG 58.880 47.826 0.00 0.00 0.00 2.32
140 141 4.382685 CCGTATGTGGGAGAGTACAAATGT 60.383 45.833 0.00 0.00 0.00 2.71
141 142 5.163488 CCGTATGTGGGAGAGTACAAATGTA 60.163 44.000 0.00 0.00 0.00 2.29
142 143 6.334989 CGTATGTGGGAGAGTACAAATGTAA 58.665 40.000 0.00 0.00 31.52 2.41
143 144 6.814644 CGTATGTGGGAGAGTACAAATGTAAA 59.185 38.462 0.00 0.00 31.52 2.01
144 145 7.332430 CGTATGTGGGAGAGTACAAATGTAAAA 59.668 37.037 0.00 0.00 31.52 1.52
145 146 9.005777 GTATGTGGGAGAGTACAAATGTAAAAA 57.994 33.333 0.00 0.00 31.52 1.94
168 169 8.776376 AAAAATTATTCAGTAAGCAATGGTGG 57.224 30.769 0.00 0.00 0.00 4.61
169 170 7.716799 AAATTATTCAGTAAGCAATGGTGGA 57.283 32.000 0.00 0.00 0.00 4.02
170 171 6.699575 ATTATTCAGTAAGCAATGGTGGAC 57.300 37.500 0.00 0.00 0.00 4.02
171 172 3.788227 TTCAGTAAGCAATGGTGGACT 57.212 42.857 0.00 0.00 0.00 3.85
172 173 4.901197 TTCAGTAAGCAATGGTGGACTA 57.099 40.909 0.78 0.00 0.00 2.59
173 174 4.901197 TCAGTAAGCAATGGTGGACTAA 57.099 40.909 0.78 0.00 0.00 2.24
174 175 5.435686 TCAGTAAGCAATGGTGGACTAAT 57.564 39.130 0.78 0.00 0.00 1.73
175 176 5.428253 TCAGTAAGCAATGGTGGACTAATC 58.572 41.667 0.78 0.00 0.00 1.75
176 177 5.045942 TCAGTAAGCAATGGTGGACTAATCA 60.046 40.000 0.78 0.00 0.00 2.57
177 178 5.647658 CAGTAAGCAATGGTGGACTAATCAA 59.352 40.000 0.78 0.00 0.00 2.57
178 179 5.882557 AGTAAGCAATGGTGGACTAATCAAG 59.117 40.000 0.00 0.00 0.00 3.02
179 180 3.624777 AGCAATGGTGGACTAATCAAGG 58.375 45.455 0.00 0.00 0.00 3.61
180 181 2.689983 GCAATGGTGGACTAATCAAGGG 59.310 50.000 0.00 0.00 0.00 3.95
181 182 3.624707 GCAATGGTGGACTAATCAAGGGA 60.625 47.826 0.00 0.00 0.00 4.20
182 183 4.202441 CAATGGTGGACTAATCAAGGGAG 58.798 47.826 0.00 0.00 0.00 4.30
183 184 3.199442 TGGTGGACTAATCAAGGGAGA 57.801 47.619 0.00 0.00 0.00 3.71
184 185 3.107601 TGGTGGACTAATCAAGGGAGAG 58.892 50.000 0.00 0.00 0.00 3.20
185 186 3.108376 GGTGGACTAATCAAGGGAGAGT 58.892 50.000 0.00 0.00 0.00 3.24
186 187 3.118592 GGTGGACTAATCAAGGGAGAGTG 60.119 52.174 0.00 0.00 0.00 3.51
187 188 3.515901 GTGGACTAATCAAGGGAGAGTGT 59.484 47.826 0.00 0.00 0.00 3.55
188 189 4.020128 GTGGACTAATCAAGGGAGAGTGTT 60.020 45.833 0.00 0.00 0.00 3.32
189 190 5.187186 GTGGACTAATCAAGGGAGAGTGTTA 59.813 44.000 0.00 0.00 0.00 2.41
190 191 5.964477 TGGACTAATCAAGGGAGAGTGTTAT 59.036 40.000 0.00 0.00 0.00 1.89
191 192 7.069578 GTGGACTAATCAAGGGAGAGTGTTATA 59.930 40.741 0.00 0.00 0.00 0.98
192 193 7.789831 TGGACTAATCAAGGGAGAGTGTTATAT 59.210 37.037 0.00 0.00 0.00 0.86
193 194 9.310449 GGACTAATCAAGGGAGAGTGTTATATA 57.690 37.037 0.00 0.00 0.00 0.86
195 196 9.884814 ACTAATCAAGGGAGAGTGTTATATAGT 57.115 33.333 0.00 0.00 0.00 2.12
200 201 9.521841 TCAAGGGAGAGTGTTATATAGTCTATG 57.478 37.037 2.37 0.00 0.00 2.23
201 202 8.744652 CAAGGGAGAGTGTTATATAGTCTATGG 58.255 40.741 2.37 0.00 0.00 2.74
202 203 6.893005 AGGGAGAGTGTTATATAGTCTATGGC 59.107 42.308 2.37 0.00 0.00 4.40
203 204 6.663953 GGGAGAGTGTTATATAGTCTATGGCA 59.336 42.308 2.37 0.00 0.00 4.92
204 205 7.178628 GGGAGAGTGTTATATAGTCTATGGCAA 59.821 40.741 2.37 0.00 0.00 4.52
205 206 8.247562 GGAGAGTGTTATATAGTCTATGGCAAG 58.752 40.741 2.37 0.00 0.00 4.01
206 207 8.713708 AGAGTGTTATATAGTCTATGGCAAGT 57.286 34.615 2.37 0.00 0.00 3.16
207 208 8.798402 AGAGTGTTATATAGTCTATGGCAAGTC 58.202 37.037 2.37 0.00 0.00 3.01
208 209 8.478775 AGTGTTATATAGTCTATGGCAAGTCA 57.521 34.615 2.37 0.00 0.00 3.41
209 210 9.094578 AGTGTTATATAGTCTATGGCAAGTCAT 57.905 33.333 2.37 0.00 0.00 3.06
210 211 9.360093 GTGTTATATAGTCTATGGCAAGTCATC 57.640 37.037 2.37 0.00 0.00 2.92
211 212 9.088987 TGTTATATAGTCTATGGCAAGTCATCA 57.911 33.333 2.37 0.00 0.00 3.07
212 213 9.929180 GTTATATAGTCTATGGCAAGTCATCAA 57.071 33.333 2.37 0.00 0.00 2.57
216 217 8.757982 ATAGTCTATGGCAAGTCATCAATTTT 57.242 30.769 0.00 0.00 0.00 1.82
217 218 9.851686 ATAGTCTATGGCAAGTCATCAATTTTA 57.148 29.630 0.00 0.00 0.00 1.52
218 219 8.757982 AGTCTATGGCAAGTCATCAATTTTAT 57.242 30.769 0.00 0.00 0.00 1.40
219 220 8.844244 AGTCTATGGCAAGTCATCAATTTTATC 58.156 33.333 0.00 0.00 0.00 1.75
220 221 8.078596 GTCTATGGCAAGTCATCAATTTTATCC 58.921 37.037 0.00 0.00 0.00 2.59
221 222 6.795144 ATGGCAAGTCATCAATTTTATCCA 57.205 33.333 0.00 0.00 0.00 3.41
222 223 6.795144 TGGCAAGTCATCAATTTTATCCAT 57.205 33.333 0.00 0.00 0.00 3.41
223 224 6.808829 TGGCAAGTCATCAATTTTATCCATC 58.191 36.000 0.00 0.00 0.00 3.51
224 225 6.608405 TGGCAAGTCATCAATTTTATCCATCT 59.392 34.615 0.00 0.00 0.00 2.90
225 226 7.779326 TGGCAAGTCATCAATTTTATCCATCTA 59.221 33.333 0.00 0.00 0.00 1.98
226 227 8.078596 GGCAAGTCATCAATTTTATCCATCTAC 58.921 37.037 0.00 0.00 0.00 2.59
227 228 8.078596 GCAAGTCATCAATTTTATCCATCTACC 58.921 37.037 0.00 0.00 0.00 3.18
228 229 9.123902 CAAGTCATCAATTTTATCCATCTACCA 57.876 33.333 0.00 0.00 0.00 3.25
229 230 9.872684 AAGTCATCAATTTTATCCATCTACCAT 57.127 29.630 0.00 0.00 0.00 3.55
230 231 9.293404 AGTCATCAATTTTATCCATCTACCATG 57.707 33.333 0.00 0.00 0.00 3.66
231 232 9.288576 GTCATCAATTTTATCCATCTACCATGA 57.711 33.333 0.00 0.00 0.00 3.07
232 233 9.865152 TCATCAATTTTATCCATCTACCATGAA 57.135 29.630 0.00 0.00 0.00 2.57
234 235 9.872684 ATCAATTTTATCCATCTACCATGAAGT 57.127 29.630 0.00 0.00 0.00 3.01
254 255 8.827177 TGAAGTATTATTTCTTCACGTGTCTT 57.173 30.769 16.51 4.51 43.02 3.01
255 256 8.922676 TGAAGTATTATTTCTTCACGTGTCTTC 58.077 33.333 16.51 12.07 43.02 2.87
256 257 9.141400 GAAGTATTATTTCTTCACGTGTCTTCT 57.859 33.333 16.51 0.23 39.57 2.85
257 258 8.690680 AGTATTATTTCTTCACGTGTCTTCTC 57.309 34.615 16.51 0.00 0.00 2.87
258 259 8.524487 AGTATTATTTCTTCACGTGTCTTCTCT 58.476 33.333 16.51 0.00 0.00 3.10
259 260 9.784680 GTATTATTTCTTCACGTGTCTTCTCTA 57.215 33.333 16.51 0.00 0.00 2.43
261 262 9.877178 ATTATTTCTTCACGTGTCTTCTCTATT 57.123 29.630 16.51 0.00 0.00 1.73
262 263 7.588143 ATTTCTTCACGTGTCTTCTCTATTG 57.412 36.000 16.51 0.00 0.00 1.90
263 264 5.707242 TCTTCACGTGTCTTCTCTATTGT 57.293 39.130 16.51 0.00 0.00 2.71
264 265 5.700846 TCTTCACGTGTCTTCTCTATTGTC 58.299 41.667 16.51 0.00 0.00 3.18
265 266 5.473846 TCTTCACGTGTCTTCTCTATTGTCT 59.526 40.000 16.51 0.00 0.00 3.41
266 267 5.707242 TCACGTGTCTTCTCTATTGTCTT 57.293 39.130 16.51 0.00 0.00 3.01
267 268 5.700846 TCACGTGTCTTCTCTATTGTCTTC 58.299 41.667 16.51 0.00 0.00 2.87
268 269 5.473846 TCACGTGTCTTCTCTATTGTCTTCT 59.526 40.000 16.51 0.00 0.00 2.85
269 270 6.016192 TCACGTGTCTTCTCTATTGTCTTCTT 60.016 38.462 16.51 0.00 0.00 2.52
270 271 7.174426 TCACGTGTCTTCTCTATTGTCTTCTTA 59.826 37.037 16.51 0.00 0.00 2.10
271 272 7.971168 CACGTGTCTTCTCTATTGTCTTCTTAT 59.029 37.037 7.58 0.00 0.00 1.73
272 273 8.524487 ACGTGTCTTCTCTATTGTCTTCTTATT 58.476 33.333 0.00 0.00 0.00 1.40
273 274 9.360093 CGTGTCTTCTCTATTGTCTTCTTATTT 57.640 33.333 0.00 0.00 0.00 1.40
286 287 9.784531 TTGTCTTCTTATTTTCATCTTCTCACT 57.215 29.630 0.00 0.00 0.00 3.41
287 288 9.784531 TGTCTTCTTATTTTCATCTTCTCACTT 57.215 29.630 0.00 0.00 0.00 3.16
298 299 7.545362 TCATCTTCTCACTTATTTAGCTTGC 57.455 36.000 0.00 0.00 0.00 4.01
299 300 7.334090 TCATCTTCTCACTTATTTAGCTTGCT 58.666 34.615 0.00 0.00 0.00 3.91
300 301 8.478066 TCATCTTCTCACTTATTTAGCTTGCTA 58.522 33.333 0.00 0.00 0.00 3.49
301 302 9.102757 CATCTTCTCACTTATTTAGCTTGCTAA 57.897 33.333 10.62 10.62 0.00 3.09
302 303 8.480643 TCTTCTCACTTATTTAGCTTGCTAAC 57.519 34.615 13.82 0.00 0.00 2.34
303 304 7.549488 TCTTCTCACTTATTTAGCTTGCTAACC 59.451 37.037 13.82 0.00 0.00 2.85
304 305 6.707290 TCTCACTTATTTAGCTTGCTAACCA 58.293 36.000 13.82 2.38 0.00 3.67
305 306 7.338710 TCTCACTTATTTAGCTTGCTAACCAT 58.661 34.615 13.82 9.06 0.00 3.55
306 307 7.280876 TCTCACTTATTTAGCTTGCTAACCATG 59.719 37.037 13.82 9.50 0.00 3.66
307 308 6.318648 TCACTTATTTAGCTTGCTAACCATGG 59.681 38.462 11.19 11.19 0.00 3.66
308 309 5.067805 ACTTATTTAGCTTGCTAACCATGGC 59.932 40.000 13.04 0.00 0.00 4.40
309 310 2.806945 TTAGCTTGCTAACCATGGCT 57.193 45.000 13.04 0.95 36.97 4.75
310 311 2.806945 TAGCTTGCTAACCATGGCTT 57.193 45.000 13.04 8.20 35.51 4.35
311 312 2.806945 AGCTTGCTAACCATGGCTTA 57.193 45.000 13.04 8.95 33.52 3.09
312 313 3.085952 AGCTTGCTAACCATGGCTTAA 57.914 42.857 13.04 0.00 33.52 1.85
313 314 2.755103 AGCTTGCTAACCATGGCTTAAC 59.245 45.455 13.04 6.15 33.52 2.01
314 315 2.491693 GCTTGCTAACCATGGCTTAACA 59.508 45.455 13.04 8.62 33.52 2.41
315 316 3.428045 GCTTGCTAACCATGGCTTAACAG 60.428 47.826 13.04 2.81 33.52 3.16
316 317 3.433306 TGCTAACCATGGCTTAACAGT 57.567 42.857 13.04 0.00 33.52 3.55
317 318 3.761897 TGCTAACCATGGCTTAACAGTT 58.238 40.909 13.04 0.00 33.52 3.16
318 319 3.505680 TGCTAACCATGGCTTAACAGTTG 59.494 43.478 13.04 0.00 33.52 3.16
319 320 3.119495 GCTAACCATGGCTTAACAGTTGG 60.119 47.826 13.04 0.00 0.00 3.77
320 321 2.969821 ACCATGGCTTAACAGTTGGA 57.030 45.000 13.04 0.00 0.00 3.53
321 322 2.514803 ACCATGGCTTAACAGTTGGAC 58.485 47.619 13.04 0.00 0.00 4.02
322 323 2.108250 ACCATGGCTTAACAGTTGGACT 59.892 45.455 13.04 0.00 0.00 3.85
323 324 3.157087 CCATGGCTTAACAGTTGGACTT 58.843 45.455 0.00 0.00 0.00 3.01
324 325 3.573967 CCATGGCTTAACAGTTGGACTTT 59.426 43.478 0.00 0.00 0.00 2.66
325 326 4.039124 CCATGGCTTAACAGTTGGACTTTT 59.961 41.667 0.00 0.00 0.00 2.27
326 327 4.647424 TGGCTTAACAGTTGGACTTTTG 57.353 40.909 0.00 0.00 0.00 2.44
327 328 4.020543 TGGCTTAACAGTTGGACTTTTGT 58.979 39.130 0.00 0.00 0.00 2.83
328 329 4.464597 TGGCTTAACAGTTGGACTTTTGTT 59.535 37.500 0.00 0.00 37.51 2.83
329 330 5.652891 TGGCTTAACAGTTGGACTTTTGTTA 59.347 36.000 0.00 0.00 35.55 2.41
330 331 6.153000 TGGCTTAACAGTTGGACTTTTGTTAA 59.847 34.615 0.00 8.00 41.24 2.01
331 332 6.474427 GGCTTAACAGTTGGACTTTTGTTAAC 59.526 38.462 0.00 0.00 39.64 2.01
332 333 6.474427 GCTTAACAGTTGGACTTTTGTTAACC 59.526 38.462 2.48 0.00 39.64 2.85
333 334 7.629866 GCTTAACAGTTGGACTTTTGTTAACCT 60.630 37.037 2.48 0.00 39.64 3.50
334 335 8.804912 TTAACAGTTGGACTTTTGTTAACCTA 57.195 30.769 2.48 0.00 39.64 3.08
335 336 6.937436 ACAGTTGGACTTTTGTTAACCTAG 57.063 37.500 2.48 0.45 33.30 3.02
336 337 5.826208 ACAGTTGGACTTTTGTTAACCTAGG 59.174 40.000 7.41 7.41 33.30 3.02
337 338 6.059484 CAGTTGGACTTTTGTTAACCTAGGA 58.941 40.000 17.98 0.00 33.30 2.94
338 339 6.715264 CAGTTGGACTTTTGTTAACCTAGGAT 59.285 38.462 17.98 6.20 33.30 3.24
339 340 7.881232 CAGTTGGACTTTTGTTAACCTAGGATA 59.119 37.037 17.98 4.91 33.30 2.59
340 341 8.442374 AGTTGGACTTTTGTTAACCTAGGATAA 58.558 33.333 17.98 12.05 33.30 1.75
341 342 9.239551 GTTGGACTTTTGTTAACCTAGGATAAT 57.760 33.333 17.98 0.00 0.00 1.28
342 343 9.816787 TTGGACTTTTGTTAACCTAGGATAATT 57.183 29.630 17.98 1.06 0.00 1.40
343 344 9.816787 TGGACTTTTGTTAACCTAGGATAATTT 57.183 29.630 17.98 0.62 0.00 1.82
365 366 7.786046 TTTCCTATGTAGACACTAAACTGGA 57.214 36.000 0.00 0.00 0.00 3.86
366 367 6.770746 TCCTATGTAGACACTAAACTGGAC 57.229 41.667 0.00 0.00 0.00 4.02
367 368 6.491383 TCCTATGTAGACACTAAACTGGACT 58.509 40.000 0.00 0.00 0.00 3.85
368 369 7.636579 TCCTATGTAGACACTAAACTGGACTA 58.363 38.462 0.00 0.00 0.00 2.59
369 370 7.774157 TCCTATGTAGACACTAAACTGGACTAG 59.226 40.741 0.00 0.00 0.00 2.57
370 371 5.640189 TGTAGACACTAAACTGGACTAGC 57.360 43.478 0.00 0.00 0.00 3.42
371 372 5.322754 TGTAGACACTAAACTGGACTAGCT 58.677 41.667 0.00 0.00 0.00 3.32
372 373 4.792521 AGACACTAAACTGGACTAGCTG 57.207 45.455 0.00 0.00 0.00 4.24
373 374 3.511934 AGACACTAAACTGGACTAGCTGG 59.488 47.826 0.00 0.00 0.00 4.85
374 375 2.567615 ACACTAAACTGGACTAGCTGGG 59.432 50.000 0.85 0.00 0.00 4.45
375 376 2.093447 CACTAAACTGGACTAGCTGGGG 60.093 54.545 0.85 0.00 0.00 4.96
376 377 0.909623 TAAACTGGACTAGCTGGGGC 59.090 55.000 0.85 0.00 39.06 5.80
377 378 1.853250 AAACTGGACTAGCTGGGGCC 61.853 60.000 0.85 4.11 39.73 5.80
378 379 2.366167 CTGGACTAGCTGGGGCCT 60.366 66.667 13.45 0.00 39.73 5.19
379 380 1.997874 CTGGACTAGCTGGGGCCTT 60.998 63.158 13.45 0.00 39.73 4.35
380 381 2.262774 CTGGACTAGCTGGGGCCTTG 62.263 65.000 13.45 0.00 39.73 3.61
381 382 2.124529 GACTAGCTGGGGCCTTGC 60.125 66.667 0.84 8.43 39.73 4.01
382 383 4.101448 ACTAGCTGGGGCCTTGCG 62.101 66.667 0.84 0.00 39.73 4.85
383 384 4.101448 CTAGCTGGGGCCTTGCGT 62.101 66.667 0.84 1.54 39.73 5.24
384 385 2.685743 TAGCTGGGGCCTTGCGTA 60.686 61.111 0.84 0.63 39.73 4.42
385 386 2.252072 CTAGCTGGGGCCTTGCGTAA 62.252 60.000 0.84 0.00 39.73 3.18
386 387 2.252072 TAGCTGGGGCCTTGCGTAAG 62.252 60.000 6.24 6.24 39.73 2.34
387 388 2.668632 CTGGGGCCTTGCGTAAGA 59.331 61.111 15.38 0.00 43.02 2.10
388 389 1.224592 CTGGGGCCTTGCGTAAGAT 59.775 57.895 15.38 0.00 43.02 2.40
389 390 0.394352 CTGGGGCCTTGCGTAAGATT 60.394 55.000 15.38 0.00 43.02 2.40
390 391 0.913205 TGGGGCCTTGCGTAAGATTA 59.087 50.000 15.38 0.00 43.02 1.75
391 392 1.282447 TGGGGCCTTGCGTAAGATTAA 59.718 47.619 15.38 0.00 43.02 1.40
392 393 2.092103 TGGGGCCTTGCGTAAGATTAAT 60.092 45.455 15.38 0.00 43.02 1.40
393 394 2.956333 GGGGCCTTGCGTAAGATTAATT 59.044 45.455 15.38 0.00 43.02 1.40
394 395 3.383505 GGGGCCTTGCGTAAGATTAATTT 59.616 43.478 15.38 0.00 43.02 1.82
395 396 4.581409 GGGGCCTTGCGTAAGATTAATTTA 59.419 41.667 15.38 0.00 43.02 1.40
396 397 5.243060 GGGGCCTTGCGTAAGATTAATTTAT 59.757 40.000 15.38 0.00 43.02 1.40
397 398 6.239204 GGGGCCTTGCGTAAGATTAATTTATT 60.239 38.462 15.38 0.00 43.02 1.40
398 399 6.861572 GGGCCTTGCGTAAGATTAATTTATTC 59.138 38.462 15.38 0.00 43.02 1.75
399 400 7.422399 GGCCTTGCGTAAGATTAATTTATTCA 58.578 34.615 15.38 0.00 43.02 2.57
400 401 8.082242 GGCCTTGCGTAAGATTAATTTATTCAT 58.918 33.333 15.38 0.00 43.02 2.57
421 422 9.825109 ATTCATATGAACATTGCAATTTGATCA 57.175 25.926 20.19 12.01 36.80 2.92
422 423 9.825109 TTCATATGAACATTGCAATTTGATCAT 57.175 25.926 21.91 21.91 38.45 2.45
423 424 9.471084 TCATATGAACATTGCAATTTGATCATC 57.529 29.630 21.88 7.80 36.88 2.92
424 425 9.255304 CATATGAACATTGCAATTTGATCATCA 57.745 29.630 21.88 12.25 36.88 3.07
425 426 9.825109 ATATGAACATTGCAATTTGATCATCAA 57.175 25.926 21.88 11.41 36.88 2.57
430 431 6.588756 ACATTGCAATTTGATCATCAACTGAC 59.411 34.615 9.83 5.14 35.89 3.51
461 462 4.450419 AGATTCTCAAGCGAACAAGAGTTG 59.550 41.667 0.00 0.00 38.30 3.16
469 470 3.128349 GCGAACAAGAGTTGGTAAGACA 58.872 45.455 0.00 0.00 38.30 3.41
502 503 3.506067 ACAGTTTTTCTTAATCCCCGCAG 59.494 43.478 0.00 0.00 0.00 5.18
537 539 9.736023 AACAGTTTTTCTTAATGTCTTGCTAAG 57.264 29.630 0.00 0.00 0.00 2.18
539 541 9.736023 CAGTTTTTCTTAATGTCTTGCTAAGTT 57.264 29.630 0.00 0.00 0.00 2.66
540 542 9.736023 AGTTTTTCTTAATGTCTTGCTAAGTTG 57.264 29.630 0.00 0.00 0.00 3.16
541 543 9.730420 GTTTTTCTTAATGTCTTGCTAAGTTGA 57.270 29.630 0.00 0.00 0.00 3.18
563 571 6.263344 TGATTAAGACTTCGTTATGTCTCGG 58.737 40.000 0.00 0.00 42.02 4.63
575 583 1.545841 TGTCTCGGCCGATGCTATAT 58.454 50.000 31.19 0.00 37.74 0.86
578 586 2.094700 GTCTCGGCCGATGCTATATTCA 60.095 50.000 31.19 0.52 37.74 2.57
589 597 7.168972 GCCGATGCTATATTCATGAGATCTTAC 59.831 40.741 0.00 0.00 33.53 2.34
604 612 6.183361 TGAGATCTTACATTGAGATCCATGCA 60.183 38.462 9.76 0.00 46.88 3.96
608 616 7.465353 TCTTACATTGAGATCCATGCAAAAA 57.535 32.000 0.00 0.00 0.00 1.94
610 618 8.533657 TCTTACATTGAGATCCATGCAAAAATT 58.466 29.630 0.00 0.00 0.00 1.82
613 621 7.391620 ACATTGAGATCCATGCAAAAATTTCT 58.608 30.769 0.00 0.00 0.00 2.52
619 627 8.680039 AGATCCATGCAAAAATTTCTTTTCAA 57.320 26.923 0.00 0.00 33.44 2.69
624 635 9.176181 CCATGCAAAAATTTCTTTTCAATTCTG 57.824 29.630 0.00 0.00 33.44 3.02
652 663 9.863845 TTTCTTTATACATGTTATGTCACTCGA 57.136 29.630 2.30 0.00 43.67 4.04
653 664 8.851960 TCTTTATACATGTTATGTCACTCGAC 57.148 34.615 2.30 0.00 43.67 4.20
654 665 8.683615 TCTTTATACATGTTATGTCACTCGACT 58.316 33.333 2.30 0.00 43.67 4.18
655 666 8.628882 TTTATACATGTTATGTCACTCGACTG 57.371 34.615 2.30 0.00 43.67 3.51
656 667 4.783764 ACATGTTATGTCACTCGACTGA 57.216 40.909 0.00 0.00 39.92 3.41
661 672 4.519350 TGTTATGTCACTCGACTGAGACTT 59.481 41.667 0.00 0.00 45.57 3.01
662 673 3.567576 ATGTCACTCGACTGAGACTTG 57.432 47.619 0.00 0.00 45.57 3.16
663 674 1.001268 TGTCACTCGACTGAGACTTGC 60.001 52.381 0.00 0.00 45.57 4.01
665 676 1.268079 TCACTCGACTGAGACTTGCAG 59.732 52.381 0.00 0.00 45.57 4.41
667 678 1.000827 ACTCGACTGAGACTTGCAGTG 60.001 52.381 0.00 0.00 45.94 3.66
668 679 0.315251 TCGACTGAGACTTGCAGTGG 59.685 55.000 0.00 0.00 45.94 4.00
669 680 0.315251 CGACTGAGACTTGCAGTGGA 59.685 55.000 0.00 0.00 45.94 4.02
670 681 1.668337 CGACTGAGACTTGCAGTGGAG 60.668 57.143 0.00 0.00 45.94 3.86
672 683 1.342819 ACTGAGACTTGCAGTGGAGTC 59.657 52.381 8.00 8.00 44.39 3.36
674 685 0.972883 GAGACTTGCAGTGGAGTCCT 59.027 55.000 11.33 1.47 42.51 3.85
675 686 1.346068 GAGACTTGCAGTGGAGTCCTT 59.654 52.381 11.33 0.00 42.51 3.36
676 687 1.071385 AGACTTGCAGTGGAGTCCTTG 59.929 52.381 11.33 10.07 42.51 3.61
677 688 0.536006 ACTTGCAGTGGAGTCCTTGC 60.536 55.000 24.03 24.03 36.12 4.01
678 689 1.228245 TTGCAGTGGAGTCCTTGCC 60.228 57.895 26.24 14.71 35.23 4.52
679 690 1.993701 TTGCAGTGGAGTCCTTGCCA 61.994 55.000 26.24 17.91 35.23 4.92
683 694 2.836154 TGGAGTCCTTGCCACACC 59.164 61.111 11.33 0.00 0.00 4.16
684 695 1.770110 TGGAGTCCTTGCCACACCT 60.770 57.895 11.33 0.00 0.00 4.00
1693 1708 3.314357 CGGTCATGAAGGAGTACATCGTA 59.686 47.826 0.00 0.00 0.00 3.43
1938 1953 3.371063 GCAGTGGGAGGACGACGA 61.371 66.667 0.00 0.00 32.45 4.20
1940 1955 1.674651 CAGTGGGAGGACGACGAGA 60.675 63.158 0.00 0.00 32.45 4.04
2155 2170 2.492012 GACTATCTCGTCCGCCTCTTA 58.508 52.381 0.00 0.00 0.00 2.10
2458 2473 3.861797 GACGGCCGGATGGTGGAT 61.862 66.667 31.76 3.99 37.67 3.41
2797 2815 1.734137 CGAGATCAACGACCCCGAT 59.266 57.895 6.49 0.00 39.50 4.18
3817 3873 4.704833 ATGAGCAGCACCGCCGTT 62.705 61.111 0.00 0.00 0.00 4.44
3865 3925 2.625375 ATGCTAGTCCATGCATGCG 58.375 52.632 21.69 14.24 46.58 4.73
3921 3984 2.863401 AACTCAAAACCAAACGAGGC 57.137 45.000 0.00 0.00 0.00 4.70
4133 4202 6.072199 AGGGGGCTCATTTCTCATAATATC 57.928 41.667 0.00 0.00 0.00 1.63
4134 4203 5.553162 AGGGGGCTCATTTCTCATAATATCA 59.447 40.000 0.00 0.00 0.00 2.15
4135 4204 5.649831 GGGGGCTCATTTCTCATAATATCAC 59.350 44.000 0.00 0.00 0.00 3.06
4136 4205 6.479884 GGGGCTCATTTCTCATAATATCACT 58.520 40.000 0.00 0.00 0.00 3.41
4137 4206 6.373774 GGGGCTCATTTCTCATAATATCACTG 59.626 42.308 0.00 0.00 0.00 3.66
4138 4207 6.373774 GGGCTCATTTCTCATAATATCACTGG 59.626 42.308 0.00 0.00 0.00 4.00
4139 4208 6.939163 GGCTCATTTCTCATAATATCACTGGT 59.061 38.462 0.00 0.00 0.00 4.00
4140 4209 8.097038 GGCTCATTTCTCATAATATCACTGGTA 58.903 37.037 0.00 0.00 0.00 3.25
4141 4210 9.149225 GCTCATTTCTCATAATATCACTGGTAG 57.851 37.037 0.00 0.00 0.00 3.18
4196 4265 4.508861 GGGACTAAATATGCGCGACTAAAA 59.491 41.667 12.10 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.826720 GTTGGGTTCACATGGCATGAT 59.173 47.619 32.74 14.79 0.00 2.45
7 8 1.203038 AGTTGGGTTCACATGGCATGA 60.203 47.619 32.74 10.84 0.00 3.07
8 9 1.259609 AGTTGGGTTCACATGGCATG 58.740 50.000 25.31 25.31 0.00 4.06
9 10 2.897271 TAGTTGGGTTCACATGGCAT 57.103 45.000 0.00 0.00 0.00 4.40
10 11 2.040947 TGATAGTTGGGTTCACATGGCA 59.959 45.455 0.00 0.00 0.00 4.92
11 12 2.722094 TGATAGTTGGGTTCACATGGC 58.278 47.619 0.00 0.00 0.00 4.40
12 13 4.336433 GTGATGATAGTTGGGTTCACATGG 59.664 45.833 0.00 0.00 34.92 3.66
13 14 4.943093 TGTGATGATAGTTGGGTTCACATG 59.057 41.667 0.00 0.00 38.71 3.21
14 15 5.178096 TGTGATGATAGTTGGGTTCACAT 57.822 39.130 0.00 0.00 38.71 3.21
15 16 4.632327 TGTGATGATAGTTGGGTTCACA 57.368 40.909 0.00 0.00 40.64 3.58
16 17 5.003804 ACTTGTGATGATAGTTGGGTTCAC 58.996 41.667 0.00 0.00 35.27 3.18
17 18 5.241403 ACTTGTGATGATAGTTGGGTTCA 57.759 39.130 0.00 0.00 0.00 3.18
18 19 5.942872 CAACTTGTGATGATAGTTGGGTTC 58.057 41.667 0.00 0.00 43.03 3.62
19 20 5.964958 CAACTTGTGATGATAGTTGGGTT 57.035 39.130 0.00 0.00 43.03 4.11
42 43 9.748708 GCCACATAGCAATTAATCTGAAAATTA 57.251 29.630 0.00 0.00 0.00 1.40
43 44 8.259411 TGCCACATAGCAATTAATCTGAAAATT 58.741 29.630 0.00 0.00 40.56 1.82
44 45 7.707893 GTGCCACATAGCAATTAATCTGAAAAT 59.292 33.333 0.00 0.00 46.19 1.82
45 46 7.035004 GTGCCACATAGCAATTAATCTGAAAA 58.965 34.615 0.00 0.00 46.19 2.29
46 47 6.405731 GGTGCCACATAGCAATTAATCTGAAA 60.406 38.462 0.00 0.00 46.19 2.69
47 48 5.067674 GGTGCCACATAGCAATTAATCTGAA 59.932 40.000 0.00 0.00 46.19 3.02
48 49 4.580167 GGTGCCACATAGCAATTAATCTGA 59.420 41.667 0.00 0.00 46.19 3.27
49 50 4.338964 TGGTGCCACATAGCAATTAATCTG 59.661 41.667 0.00 0.00 46.19 2.90
50 51 4.535781 TGGTGCCACATAGCAATTAATCT 58.464 39.130 0.00 0.00 46.19 2.40
51 52 4.916983 TGGTGCCACATAGCAATTAATC 57.083 40.909 0.00 0.00 46.19 1.75
52 53 4.501915 GCATGGTGCCACATAGCAATTAAT 60.502 41.667 0.00 0.00 46.19 1.40
53 54 3.181477 GCATGGTGCCACATAGCAATTAA 60.181 43.478 0.00 0.00 46.19 1.40
54 55 2.361757 GCATGGTGCCACATAGCAATTA 59.638 45.455 0.00 0.00 46.19 1.40
55 56 1.137479 GCATGGTGCCACATAGCAATT 59.863 47.619 0.00 0.00 46.19 2.32
56 57 0.748450 GCATGGTGCCACATAGCAAT 59.252 50.000 0.00 0.00 46.19 3.56
57 58 1.655885 CGCATGGTGCCACATAGCAA 61.656 55.000 0.00 0.00 46.19 3.91
58 59 2.114051 CGCATGGTGCCACATAGCA 61.114 57.895 0.00 0.00 41.12 3.49
59 60 1.168407 ATCGCATGGTGCCACATAGC 61.168 55.000 0.00 0.00 41.12 2.97
60 61 1.265095 GAATCGCATGGTGCCACATAG 59.735 52.381 0.00 0.00 41.12 2.23
61 62 1.308047 GAATCGCATGGTGCCACATA 58.692 50.000 0.00 0.00 41.12 2.29
62 63 0.680601 TGAATCGCATGGTGCCACAT 60.681 50.000 0.00 0.00 41.12 3.21
63 64 1.303155 TGAATCGCATGGTGCCACA 60.303 52.632 0.00 0.00 41.12 4.17
64 65 1.430632 CTGAATCGCATGGTGCCAC 59.569 57.895 0.00 0.00 41.12 5.01
65 66 1.750018 CCTGAATCGCATGGTGCCA 60.750 57.895 0.00 0.00 41.12 4.92
66 67 3.113745 CCTGAATCGCATGGTGCC 58.886 61.111 0.00 0.00 41.12 5.01
67 68 1.936436 TTGCCTGAATCGCATGGTGC 61.936 55.000 0.00 0.00 40.69 5.01
68 69 0.527113 TTTGCCTGAATCGCATGGTG 59.473 50.000 0.00 0.00 35.83 4.17
69 70 1.255882 TTTTGCCTGAATCGCATGGT 58.744 45.000 0.00 0.00 35.83 3.55
70 71 2.367030 TTTTTGCCTGAATCGCATGG 57.633 45.000 0.00 0.00 35.83 3.66
86 87 7.818930 ACCACATAGCAATCGATTTGAATTTTT 59.181 29.630 8.21 0.00 37.53 1.94
87 88 7.322664 ACCACATAGCAATCGATTTGAATTTT 58.677 30.769 8.21 0.00 37.53 1.82
88 89 6.866480 ACCACATAGCAATCGATTTGAATTT 58.134 32.000 8.21 0.00 37.53 1.82
89 90 6.455360 ACCACATAGCAATCGATTTGAATT 57.545 33.333 8.21 0.00 37.53 2.17
90 91 7.229306 ACATACCACATAGCAATCGATTTGAAT 59.771 33.333 8.21 0.00 37.53 2.57
91 92 6.542005 ACATACCACATAGCAATCGATTTGAA 59.458 34.615 8.21 0.00 37.53 2.69
92 93 6.054941 ACATACCACATAGCAATCGATTTGA 58.945 36.000 8.21 0.00 37.53 2.69
93 94 6.304356 ACATACCACATAGCAATCGATTTG 57.696 37.500 8.21 6.96 38.43 2.32
94 95 5.470098 GGACATACCACATAGCAATCGATTT 59.530 40.000 8.21 0.00 38.79 2.17
95 96 4.997395 GGACATACCACATAGCAATCGATT 59.003 41.667 4.39 4.39 38.79 3.34
96 97 4.569943 GGACATACCACATAGCAATCGAT 58.430 43.478 0.00 0.00 38.79 3.59
97 98 3.552068 CGGACATACCACATAGCAATCGA 60.552 47.826 0.00 0.00 38.90 3.59
98 99 2.731451 CGGACATACCACATAGCAATCG 59.269 50.000 0.00 0.00 38.90 3.34
99 100 3.728845 ACGGACATACCACATAGCAATC 58.271 45.455 0.00 0.00 38.90 2.67
100 101 3.838244 ACGGACATACCACATAGCAAT 57.162 42.857 0.00 0.00 38.90 3.56
101 102 4.100344 ACATACGGACATACCACATAGCAA 59.900 41.667 0.00 0.00 38.90 3.91
102 103 3.639561 ACATACGGACATACCACATAGCA 59.360 43.478 0.00 0.00 38.90 3.49
103 104 3.987868 CACATACGGACATACCACATAGC 59.012 47.826 0.00 0.00 38.90 2.97
104 105 4.556233 CCACATACGGACATACCACATAG 58.444 47.826 0.00 0.00 38.90 2.23
105 106 3.322541 CCCACATACGGACATACCACATA 59.677 47.826 0.00 0.00 38.90 2.29
106 107 2.104111 CCCACATACGGACATACCACAT 59.896 50.000 0.00 0.00 38.90 3.21
107 108 1.483004 CCCACATACGGACATACCACA 59.517 52.381 0.00 0.00 38.90 4.17
108 109 1.758280 TCCCACATACGGACATACCAC 59.242 52.381 0.00 0.00 38.90 4.16
109 110 2.036387 CTCCCACATACGGACATACCA 58.964 52.381 0.00 0.00 38.90 3.25
110 111 2.296471 CTCTCCCACATACGGACATACC 59.704 54.545 0.00 0.00 0.00 2.73
111 112 2.957006 ACTCTCCCACATACGGACATAC 59.043 50.000 0.00 0.00 0.00 2.39
112 113 3.308035 ACTCTCCCACATACGGACATA 57.692 47.619 0.00 0.00 0.00 2.29
113 114 2.160721 ACTCTCCCACATACGGACAT 57.839 50.000 0.00 0.00 0.00 3.06
114 115 2.291089 TGTACTCTCCCACATACGGACA 60.291 50.000 0.00 0.00 0.00 4.02
115 116 2.372264 TGTACTCTCCCACATACGGAC 58.628 52.381 0.00 0.00 0.00 4.79
116 117 2.812836 TGTACTCTCCCACATACGGA 57.187 50.000 0.00 0.00 0.00 4.69
117 118 3.880047 TTTGTACTCTCCCACATACGG 57.120 47.619 0.00 0.00 0.00 4.02
118 119 4.755411 ACATTTGTACTCTCCCACATACG 58.245 43.478 0.00 0.00 0.00 3.06
119 120 8.556213 TTTTACATTTGTACTCTCCCACATAC 57.444 34.615 0.00 0.00 0.00 2.39
143 144 8.592809 TCCACCATTGCTTACTGAATAATTTTT 58.407 29.630 0.00 0.00 0.00 1.94
144 145 8.034804 GTCCACCATTGCTTACTGAATAATTTT 58.965 33.333 0.00 0.00 0.00 1.82
145 146 7.397192 AGTCCACCATTGCTTACTGAATAATTT 59.603 33.333 0.00 0.00 0.00 1.82
146 147 6.891908 AGTCCACCATTGCTTACTGAATAATT 59.108 34.615 0.00 0.00 0.00 1.40
147 148 6.426587 AGTCCACCATTGCTTACTGAATAAT 58.573 36.000 0.00 0.00 0.00 1.28
148 149 5.815581 AGTCCACCATTGCTTACTGAATAA 58.184 37.500 0.00 0.00 0.00 1.40
149 150 5.435686 AGTCCACCATTGCTTACTGAATA 57.564 39.130 0.00 0.00 0.00 1.75
150 151 4.307032 AGTCCACCATTGCTTACTGAAT 57.693 40.909 0.00 0.00 0.00 2.57
151 152 3.788227 AGTCCACCATTGCTTACTGAA 57.212 42.857 0.00 0.00 0.00 3.02
152 153 4.901197 TTAGTCCACCATTGCTTACTGA 57.099 40.909 0.00 0.00 0.00 3.41
153 154 5.185454 TGATTAGTCCACCATTGCTTACTG 58.815 41.667 0.00 0.00 0.00 2.74
154 155 5.435686 TGATTAGTCCACCATTGCTTACT 57.564 39.130 0.00 0.00 0.00 2.24
155 156 5.066505 CCTTGATTAGTCCACCATTGCTTAC 59.933 44.000 0.00 0.00 0.00 2.34
156 157 5.192927 CCTTGATTAGTCCACCATTGCTTA 58.807 41.667 0.00 0.00 0.00 3.09
157 158 4.019174 CCTTGATTAGTCCACCATTGCTT 58.981 43.478 0.00 0.00 0.00 3.91
158 159 3.624777 CCTTGATTAGTCCACCATTGCT 58.375 45.455 0.00 0.00 0.00 3.91
159 160 2.689983 CCCTTGATTAGTCCACCATTGC 59.310 50.000 0.00 0.00 0.00 3.56
160 161 4.080356 TCTCCCTTGATTAGTCCACCATTG 60.080 45.833 0.00 0.00 0.00 2.82
161 162 4.111577 TCTCCCTTGATTAGTCCACCATT 58.888 43.478 0.00 0.00 0.00 3.16
162 163 3.713764 CTCTCCCTTGATTAGTCCACCAT 59.286 47.826 0.00 0.00 0.00 3.55
163 164 3.107601 CTCTCCCTTGATTAGTCCACCA 58.892 50.000 0.00 0.00 0.00 4.17
164 165 3.108376 ACTCTCCCTTGATTAGTCCACC 58.892 50.000 0.00 0.00 0.00 4.61
165 166 3.515901 ACACTCTCCCTTGATTAGTCCAC 59.484 47.826 0.00 0.00 0.00 4.02
166 167 3.791320 ACACTCTCCCTTGATTAGTCCA 58.209 45.455 0.00 0.00 0.00 4.02
167 168 4.828072 AACACTCTCCCTTGATTAGTCC 57.172 45.455 0.00 0.00 0.00 3.85
169 170 9.884814 ACTATATAACACTCTCCCTTGATTAGT 57.115 33.333 0.00 0.00 0.00 2.24
174 175 9.521841 CATAGACTATATAACACTCTCCCTTGA 57.478 37.037 0.00 0.00 0.00 3.02
175 176 8.744652 CCATAGACTATATAACACTCTCCCTTG 58.255 40.741 0.00 0.00 0.00 3.61
176 177 7.397761 GCCATAGACTATATAACACTCTCCCTT 59.602 40.741 0.00 0.00 0.00 3.95
177 178 6.893005 GCCATAGACTATATAACACTCTCCCT 59.107 42.308 0.00 0.00 0.00 4.20
178 179 6.663953 TGCCATAGACTATATAACACTCTCCC 59.336 42.308 0.00 0.00 0.00 4.30
179 180 7.704578 TGCCATAGACTATATAACACTCTCC 57.295 40.000 0.00 0.00 0.00 3.71
180 181 8.798402 ACTTGCCATAGACTATATAACACTCTC 58.202 37.037 0.00 0.00 0.00 3.20
181 182 8.713708 ACTTGCCATAGACTATATAACACTCT 57.286 34.615 0.00 0.00 0.00 3.24
182 183 8.577296 TGACTTGCCATAGACTATATAACACTC 58.423 37.037 0.00 0.00 0.00 3.51
183 184 8.478775 TGACTTGCCATAGACTATATAACACT 57.521 34.615 0.00 0.00 0.00 3.55
184 185 9.360093 GATGACTTGCCATAGACTATATAACAC 57.640 37.037 0.00 0.00 0.00 3.32
185 186 9.088987 TGATGACTTGCCATAGACTATATAACA 57.911 33.333 0.00 0.00 0.00 2.41
186 187 9.929180 TTGATGACTTGCCATAGACTATATAAC 57.071 33.333 0.00 0.00 0.00 1.89
190 191 9.851686 AAAATTGATGACTTGCCATAGACTATA 57.148 29.630 0.00 0.00 0.00 1.31
191 192 8.757982 AAAATTGATGACTTGCCATAGACTAT 57.242 30.769 0.00 0.00 0.00 2.12
192 193 9.851686 ATAAAATTGATGACTTGCCATAGACTA 57.148 29.630 0.00 0.00 0.00 2.59
193 194 8.757982 ATAAAATTGATGACTTGCCATAGACT 57.242 30.769 0.00 0.00 0.00 3.24
194 195 8.078596 GGATAAAATTGATGACTTGCCATAGAC 58.921 37.037 0.00 0.00 0.00 2.59
195 196 7.779326 TGGATAAAATTGATGACTTGCCATAGA 59.221 33.333 0.00 0.00 0.00 1.98
196 197 7.944061 TGGATAAAATTGATGACTTGCCATAG 58.056 34.615 0.00 0.00 0.00 2.23
197 198 7.894753 TGGATAAAATTGATGACTTGCCATA 57.105 32.000 0.00 0.00 0.00 2.74
198 199 6.795144 TGGATAAAATTGATGACTTGCCAT 57.205 33.333 0.00 0.00 0.00 4.40
199 200 6.608405 AGATGGATAAAATTGATGACTTGCCA 59.392 34.615 0.00 0.00 0.00 4.92
200 201 7.047460 AGATGGATAAAATTGATGACTTGCC 57.953 36.000 0.00 0.00 0.00 4.52
201 202 8.078596 GGTAGATGGATAAAATTGATGACTTGC 58.921 37.037 0.00 0.00 0.00 4.01
202 203 9.123902 TGGTAGATGGATAAAATTGATGACTTG 57.876 33.333 0.00 0.00 0.00 3.16
203 204 9.872684 ATGGTAGATGGATAAAATTGATGACTT 57.127 29.630 0.00 0.00 0.00 3.01
204 205 9.293404 CATGGTAGATGGATAAAATTGATGACT 57.707 33.333 0.00 0.00 0.00 3.41
205 206 9.288576 TCATGGTAGATGGATAAAATTGATGAC 57.711 33.333 0.00 0.00 0.00 3.06
206 207 9.865152 TTCATGGTAGATGGATAAAATTGATGA 57.135 29.630 0.00 0.00 0.00 2.92
208 209 9.872684 ACTTCATGGTAGATGGATAAAATTGAT 57.127 29.630 0.00 0.00 0.00 2.57
229 230 8.827177 AAGACACGTGAAGAAATAATACTTCA 57.173 30.769 25.01 0.00 46.36 3.02
230 231 9.141400 AGAAGACACGTGAAGAAATAATACTTC 57.859 33.333 25.01 15.66 41.67 3.01
231 232 9.141400 GAGAAGACACGTGAAGAAATAATACTT 57.859 33.333 25.01 8.96 0.00 2.24
232 233 8.524487 AGAGAAGACACGTGAAGAAATAATACT 58.476 33.333 25.01 5.60 0.00 2.12
233 234 8.690680 AGAGAAGACACGTGAAGAAATAATAC 57.309 34.615 25.01 2.35 0.00 1.89
235 236 9.877178 AATAGAGAAGACACGTGAAGAAATAAT 57.123 29.630 25.01 4.50 0.00 1.28
236 237 9.140286 CAATAGAGAAGACACGTGAAGAAATAA 57.860 33.333 25.01 2.08 0.00 1.40
237 238 8.304596 ACAATAGAGAAGACACGTGAAGAAATA 58.695 33.333 25.01 7.00 0.00 1.40
238 239 7.155328 ACAATAGAGAAGACACGTGAAGAAAT 58.845 34.615 25.01 0.00 0.00 2.17
239 240 6.513180 ACAATAGAGAAGACACGTGAAGAAA 58.487 36.000 25.01 0.00 0.00 2.52
240 241 6.016192 AGACAATAGAGAAGACACGTGAAGAA 60.016 38.462 25.01 0.00 0.00 2.52
241 242 5.473846 AGACAATAGAGAAGACACGTGAAGA 59.526 40.000 25.01 0.00 0.00 2.87
242 243 5.704888 AGACAATAGAGAAGACACGTGAAG 58.295 41.667 25.01 0.00 0.00 3.02
243 244 5.707242 AGACAATAGAGAAGACACGTGAA 57.293 39.130 25.01 0.00 0.00 3.18
244 245 5.473846 AGAAGACAATAGAGAAGACACGTGA 59.526 40.000 25.01 0.00 0.00 4.35
245 246 5.704888 AGAAGACAATAGAGAAGACACGTG 58.295 41.667 15.48 15.48 0.00 4.49
246 247 5.968528 AGAAGACAATAGAGAAGACACGT 57.031 39.130 0.00 0.00 0.00 4.49
247 248 8.918961 AATAAGAAGACAATAGAGAAGACACG 57.081 34.615 0.00 0.00 0.00 4.49
260 261 9.784531 AGTGAGAAGATGAAAATAAGAAGACAA 57.215 29.630 0.00 0.00 0.00 3.18
261 262 9.784531 AAGTGAGAAGATGAAAATAAGAAGACA 57.215 29.630 0.00 0.00 0.00 3.41
272 273 8.454106 GCAAGCTAAATAAGTGAGAAGATGAAA 58.546 33.333 0.00 0.00 0.00 2.69
273 274 7.826252 AGCAAGCTAAATAAGTGAGAAGATGAA 59.174 33.333 0.00 0.00 0.00 2.57
274 275 7.334090 AGCAAGCTAAATAAGTGAGAAGATGA 58.666 34.615 0.00 0.00 0.00 2.92
275 276 7.551035 AGCAAGCTAAATAAGTGAGAAGATG 57.449 36.000 0.00 0.00 0.00 2.90
276 277 9.103861 GTTAGCAAGCTAAATAAGTGAGAAGAT 57.896 33.333 15.43 0.00 39.82 2.40
277 278 7.549488 GGTTAGCAAGCTAAATAAGTGAGAAGA 59.451 37.037 15.43 0.00 39.82 2.87
278 279 7.334421 TGGTTAGCAAGCTAAATAAGTGAGAAG 59.666 37.037 15.43 0.00 39.82 2.85
279 280 7.165485 TGGTTAGCAAGCTAAATAAGTGAGAA 58.835 34.615 15.43 0.00 39.82 2.87
280 281 6.707290 TGGTTAGCAAGCTAAATAAGTGAGA 58.293 36.000 15.43 0.00 39.82 3.27
281 282 6.985188 TGGTTAGCAAGCTAAATAAGTGAG 57.015 37.500 15.43 0.00 39.82 3.51
282 283 6.318648 CCATGGTTAGCAAGCTAAATAAGTGA 59.681 38.462 15.43 0.00 39.82 3.41
283 284 6.498304 CCATGGTTAGCAAGCTAAATAAGTG 58.502 40.000 15.43 10.19 39.82 3.16
284 285 5.067805 GCCATGGTTAGCAAGCTAAATAAGT 59.932 40.000 14.67 0.00 39.82 2.24
285 286 5.300286 AGCCATGGTTAGCAAGCTAAATAAG 59.700 40.000 14.67 7.19 39.82 1.73
286 287 5.200483 AGCCATGGTTAGCAAGCTAAATAA 58.800 37.500 14.67 5.64 39.82 1.40
287 288 4.792068 AGCCATGGTTAGCAAGCTAAATA 58.208 39.130 14.67 8.52 39.82 1.40
288 289 3.635591 AGCCATGGTTAGCAAGCTAAAT 58.364 40.909 14.67 4.86 39.82 1.40
289 290 3.085952 AGCCATGGTTAGCAAGCTAAA 57.914 42.857 14.67 2.66 39.82 1.85
290 291 2.806945 AGCCATGGTTAGCAAGCTAA 57.193 45.000 14.67 10.29 36.31 3.09
291 292 2.806945 AAGCCATGGTTAGCAAGCTA 57.193 45.000 14.67 0.00 0.00 3.32
292 293 2.755103 GTTAAGCCATGGTTAGCAAGCT 59.245 45.455 14.67 6.51 29.63 3.74
293 294 2.491693 TGTTAAGCCATGGTTAGCAAGC 59.508 45.455 14.67 2.24 34.79 4.01
294 295 3.758554 ACTGTTAAGCCATGGTTAGCAAG 59.241 43.478 14.67 13.17 36.60 4.01
295 296 3.761897 ACTGTTAAGCCATGGTTAGCAA 58.238 40.909 14.67 0.00 36.60 3.91
296 297 3.433306 ACTGTTAAGCCATGGTTAGCA 57.567 42.857 14.67 15.98 35.19 3.49
297 298 3.119495 CCAACTGTTAAGCCATGGTTAGC 60.119 47.826 14.67 12.57 0.00 3.09
298 299 4.156008 GTCCAACTGTTAAGCCATGGTTAG 59.844 45.833 14.67 3.97 0.00 2.34
299 300 4.076394 GTCCAACTGTTAAGCCATGGTTA 58.924 43.478 14.67 8.05 0.00 2.85
300 301 2.890945 GTCCAACTGTTAAGCCATGGTT 59.109 45.455 14.67 3.81 0.00 3.67
301 302 2.108250 AGTCCAACTGTTAAGCCATGGT 59.892 45.455 14.67 0.00 0.00 3.55
302 303 2.795329 AGTCCAACTGTTAAGCCATGG 58.205 47.619 7.63 7.63 0.00 3.66
303 304 4.853924 AAAGTCCAACTGTTAAGCCATG 57.146 40.909 0.00 0.00 0.00 3.66
304 305 4.649218 ACAAAAGTCCAACTGTTAAGCCAT 59.351 37.500 0.00 0.00 0.00 4.40
305 306 4.020543 ACAAAAGTCCAACTGTTAAGCCA 58.979 39.130 0.00 0.00 0.00 4.75
306 307 4.649088 ACAAAAGTCCAACTGTTAAGCC 57.351 40.909 0.00 0.00 0.00 4.35
307 308 6.474427 GGTTAACAAAAGTCCAACTGTTAAGC 59.526 38.462 15.64 15.64 46.58 3.09
308 309 7.768240 AGGTTAACAAAAGTCCAACTGTTAAG 58.232 34.615 8.10 0.00 42.09 1.85
309 310 7.706100 AGGTTAACAAAAGTCCAACTGTTAA 57.294 32.000 8.10 2.90 40.27 2.01
310 311 7.499895 CCTAGGTTAACAAAAGTCCAACTGTTA 59.500 37.037 8.10 0.00 34.08 2.41
311 312 6.320418 CCTAGGTTAACAAAAGTCCAACTGTT 59.680 38.462 8.10 0.00 36.11 3.16
312 313 5.826208 CCTAGGTTAACAAAAGTCCAACTGT 59.174 40.000 8.10 0.00 0.00 3.55
313 314 6.059484 TCCTAGGTTAACAAAAGTCCAACTG 58.941 40.000 9.08 0.00 0.00 3.16
314 315 6.256643 TCCTAGGTTAACAAAAGTCCAACT 57.743 37.500 9.08 0.00 0.00 3.16
315 316 8.625786 TTATCCTAGGTTAACAAAAGTCCAAC 57.374 34.615 9.08 0.00 0.00 3.77
316 317 9.816787 AATTATCCTAGGTTAACAAAAGTCCAA 57.183 29.630 13.42 0.00 0.00 3.53
317 318 9.816787 AAATTATCCTAGGTTAACAAAAGTCCA 57.183 29.630 13.42 0.00 0.00 4.02
339 340 8.822805 TCCAGTTTAGTGTCTACATAGGAAATT 58.177 33.333 0.00 0.00 0.00 1.82
340 341 8.258708 GTCCAGTTTAGTGTCTACATAGGAAAT 58.741 37.037 0.00 0.00 0.00 2.17
341 342 7.453752 AGTCCAGTTTAGTGTCTACATAGGAAA 59.546 37.037 0.00 0.00 0.00 3.13
342 343 6.952358 AGTCCAGTTTAGTGTCTACATAGGAA 59.048 38.462 0.00 0.00 0.00 3.36
343 344 6.491383 AGTCCAGTTTAGTGTCTACATAGGA 58.509 40.000 0.00 0.00 0.00 2.94
344 345 6.777213 AGTCCAGTTTAGTGTCTACATAGG 57.223 41.667 0.00 0.00 0.00 2.57
345 346 7.283580 AGCTAGTCCAGTTTAGTGTCTACATAG 59.716 40.741 0.00 0.00 0.00 2.23
346 347 7.067129 CAGCTAGTCCAGTTTAGTGTCTACATA 59.933 40.741 0.00 0.00 0.00 2.29
347 348 5.952947 AGCTAGTCCAGTTTAGTGTCTACAT 59.047 40.000 0.00 0.00 0.00 2.29
348 349 5.183331 CAGCTAGTCCAGTTTAGTGTCTACA 59.817 44.000 0.00 0.00 0.00 2.74
349 350 5.393243 CCAGCTAGTCCAGTTTAGTGTCTAC 60.393 48.000 0.00 0.00 0.00 2.59
350 351 4.705507 CCAGCTAGTCCAGTTTAGTGTCTA 59.294 45.833 0.00 0.00 0.00 2.59
351 352 3.511934 CCAGCTAGTCCAGTTTAGTGTCT 59.488 47.826 0.00 0.00 0.00 3.41
352 353 3.368531 CCCAGCTAGTCCAGTTTAGTGTC 60.369 52.174 0.00 0.00 0.00 3.67
353 354 2.567615 CCCAGCTAGTCCAGTTTAGTGT 59.432 50.000 0.00 0.00 0.00 3.55
354 355 2.093447 CCCCAGCTAGTCCAGTTTAGTG 60.093 54.545 0.00 0.00 0.00 2.74
355 356 2.188817 CCCCAGCTAGTCCAGTTTAGT 58.811 52.381 0.00 0.00 0.00 2.24
356 357 1.134371 GCCCCAGCTAGTCCAGTTTAG 60.134 57.143 0.00 0.00 35.50 1.85
357 358 0.909623 GCCCCAGCTAGTCCAGTTTA 59.090 55.000 0.00 0.00 35.50 2.01
358 359 1.685820 GCCCCAGCTAGTCCAGTTT 59.314 57.895 0.00 0.00 35.50 2.66
359 360 2.301738 GGCCCCAGCTAGTCCAGTT 61.302 63.158 0.00 0.00 39.73 3.16
360 361 2.689034 GGCCCCAGCTAGTCCAGT 60.689 66.667 0.00 0.00 39.73 4.00
361 362 1.997874 AAGGCCCCAGCTAGTCCAG 60.998 63.158 0.00 0.00 39.73 3.86
362 363 2.124996 AAGGCCCCAGCTAGTCCA 59.875 61.111 0.00 0.00 39.73 4.02
363 364 2.592308 CAAGGCCCCAGCTAGTCC 59.408 66.667 0.00 0.00 39.73 3.85
364 365 2.124529 GCAAGGCCCCAGCTAGTC 60.125 66.667 0.00 0.00 39.73 2.59
365 366 4.101448 CGCAAGGCCCCAGCTAGT 62.101 66.667 0.00 0.00 39.73 2.57
366 367 2.252072 TTACGCAAGGCCCCAGCTAG 62.252 60.000 0.00 0.00 46.39 3.42
367 368 2.252072 CTTACGCAAGGCCCCAGCTA 62.252 60.000 0.00 0.00 46.39 3.32
368 369 3.628646 CTTACGCAAGGCCCCAGCT 62.629 63.158 0.00 0.00 46.39 4.24
369 370 2.893682 ATCTTACGCAAGGCCCCAGC 62.894 60.000 0.00 0.00 46.39 4.85
370 371 0.394352 AATCTTACGCAAGGCCCCAG 60.394 55.000 0.00 0.00 46.39 4.45
371 372 0.913205 TAATCTTACGCAAGGCCCCA 59.087 50.000 0.00 0.00 46.39 4.96
372 373 2.047002 TTAATCTTACGCAAGGCCCC 57.953 50.000 0.00 0.00 46.39 5.80
373 374 4.649088 AAATTAATCTTACGCAAGGCCC 57.351 40.909 0.00 0.00 46.39 5.80
374 375 7.422399 TGAATAAATTAATCTTACGCAAGGCC 58.578 34.615 0.00 0.00 46.39 5.19
395 396 9.825109 TGATCAAATTGCAATGTTCATATGAAT 57.175 25.926 20.65 3.58 36.33 2.57
396 397 9.825109 ATGATCAAATTGCAATGTTCATATGAA 57.175 25.926 18.52 14.23 35.36 2.57
397 398 9.471084 GATGATCAAATTGCAATGTTCATATGA 57.529 29.630 19.40 0.00 36.57 2.15
398 399 9.255304 TGATGATCAAATTGCAATGTTCATATG 57.745 29.630 19.40 0.00 36.57 1.78
399 400 9.825109 TTGATGATCAAATTGCAATGTTCATAT 57.175 25.926 19.40 9.97 36.57 1.78
400 401 9.089601 GTTGATGATCAAATTGCAATGTTCATA 57.910 29.630 19.40 8.52 38.22 2.15
401 402 7.822334 AGTTGATGATCAAATTGCAATGTTCAT 59.178 29.630 19.44 19.44 38.22 2.57
402 403 7.117092 CAGTTGATGATCAAATTGCAATGTTCA 59.883 33.333 13.82 13.60 38.22 3.18
403 404 7.329962 TCAGTTGATGATCAAATTGCAATGTTC 59.670 33.333 13.82 8.29 38.22 3.18
404 405 7.117236 GTCAGTTGATGATCAAATTGCAATGTT 59.883 33.333 13.82 6.85 40.92 2.71
405 406 6.588756 GTCAGTTGATGATCAAATTGCAATGT 59.411 34.615 13.82 3.97 40.92 2.71
406 407 6.811665 AGTCAGTTGATGATCAAATTGCAATG 59.188 34.615 13.82 2.78 40.92 2.82
407 408 6.931838 AGTCAGTTGATGATCAAATTGCAAT 58.068 32.000 9.78 5.99 40.92 3.56
408 409 6.335471 AGTCAGTTGATGATCAAATTGCAA 57.665 33.333 9.78 0.00 40.92 4.08
409 410 5.970317 AGTCAGTTGATGATCAAATTGCA 57.030 34.783 9.78 0.59 40.92 4.08
410 411 6.127925 TGGTAGTCAGTTGATGATCAAATTGC 60.128 38.462 9.78 4.00 40.92 3.56
411 412 7.381766 TGGTAGTCAGTTGATGATCAAATTG 57.618 36.000 9.78 11.29 40.92 2.32
412 413 7.884877 TCTTGGTAGTCAGTTGATGATCAAATT 59.115 33.333 9.78 0.00 40.92 1.82
413 414 7.397221 TCTTGGTAGTCAGTTGATGATCAAAT 58.603 34.615 9.78 5.79 40.92 2.32
414 415 6.768483 TCTTGGTAGTCAGTTGATGATCAAA 58.232 36.000 9.78 0.00 40.92 2.69
415 416 6.211384 TCTCTTGGTAGTCAGTTGATGATCAA 59.789 38.462 3.29 3.29 40.92 2.57
416 417 5.716703 TCTCTTGGTAGTCAGTTGATGATCA 59.283 40.000 0.00 0.00 40.92 2.92
417 418 6.214191 TCTCTTGGTAGTCAGTTGATGATC 57.786 41.667 0.00 0.00 40.92 2.92
418 419 6.805016 ATCTCTTGGTAGTCAGTTGATGAT 57.195 37.500 0.00 0.00 40.92 2.45
419 420 6.438741 AGAATCTCTTGGTAGTCAGTTGATGA 59.561 38.462 0.00 0.00 34.79 2.92
420 421 6.638610 AGAATCTCTTGGTAGTCAGTTGATG 58.361 40.000 0.00 0.00 0.00 3.07
421 422 6.438741 TGAGAATCTCTTGGTAGTCAGTTGAT 59.561 38.462 11.92 0.00 34.92 2.57
422 423 5.775195 TGAGAATCTCTTGGTAGTCAGTTGA 59.225 40.000 11.92 0.00 34.92 3.18
423 424 6.030548 TGAGAATCTCTTGGTAGTCAGTTG 57.969 41.667 11.92 0.00 34.92 3.16
424 425 6.672266 TTGAGAATCTCTTGGTAGTCAGTT 57.328 37.500 11.92 0.00 34.92 3.16
425 426 5.337169 GCTTGAGAATCTCTTGGTAGTCAGT 60.337 44.000 11.92 0.00 34.92 3.41
430 431 4.377839 TCGCTTGAGAATCTCTTGGTAG 57.622 45.455 11.92 2.92 34.92 3.18
461 462 8.549338 AAACTGTTAGAAATAGCTGTCTTACC 57.451 34.615 0.00 0.00 0.00 2.85
537 539 7.253684 CCGAGACATAACGAAGTCTTAATCAAC 60.254 40.741 0.00 0.00 45.00 3.18
539 541 6.263344 CCGAGACATAACGAAGTCTTAATCA 58.737 40.000 0.00 0.00 45.00 2.57
540 542 5.173492 GCCGAGACATAACGAAGTCTTAATC 59.827 44.000 0.00 0.00 45.00 1.75
541 543 5.041940 GCCGAGACATAACGAAGTCTTAAT 58.958 41.667 0.00 0.00 45.00 1.40
543 545 3.181493 GGCCGAGACATAACGAAGTCTTA 60.181 47.826 0.00 0.00 45.00 2.10
544 546 2.416972 GGCCGAGACATAACGAAGTCTT 60.417 50.000 0.00 0.00 45.00 3.01
545 547 1.134560 GGCCGAGACATAACGAAGTCT 59.865 52.381 0.00 0.00 45.00 3.24
563 571 5.599732 AGATCTCATGAATATAGCATCGGC 58.400 41.667 0.00 0.00 41.61 5.54
575 583 8.026396 TGGATCTCAATGTAAGATCTCATGAA 57.974 34.615 11.66 0.00 45.56 2.57
578 586 6.879993 GCATGGATCTCAATGTAAGATCTCAT 59.120 38.462 11.66 10.39 45.56 2.90
589 597 7.843490 AGAAATTTTTGCATGGATCTCAATG 57.157 32.000 0.00 0.00 0.00 2.82
598 606 9.176181 CAGAATTGAAAAGAAATTTTTGCATGG 57.824 29.630 0.00 0.00 0.00 3.66
661 672 2.431683 GGCAAGGACTCCACTGCA 59.568 61.111 18.92 0.00 36.67 4.41
662 673 1.968540 GTGGCAAGGACTCCACTGC 60.969 63.158 11.95 11.95 46.90 4.40
663 674 4.386413 GTGGCAAGGACTCCACTG 57.614 61.111 4.31 0.00 46.90 3.66
666 677 1.352622 AAGGTGTGGCAAGGACTCCA 61.353 55.000 0.00 0.00 30.72 3.86
667 678 0.178990 AAAGGTGTGGCAAGGACTCC 60.179 55.000 0.00 0.00 0.00 3.85
668 679 1.692411 AAAAGGTGTGGCAAGGACTC 58.308 50.000 0.00 0.00 0.00 3.36
669 680 2.159179 AAAAAGGTGTGGCAAGGACT 57.841 45.000 0.00 0.00 0.00 3.85
698 709 2.354003 CCCATTGTGAAACCAGCCATTC 60.354 50.000 0.00 0.00 34.36 2.67
702 713 2.745379 ACCCATTGTGAAACCAGCC 58.255 52.632 0.00 0.00 34.36 4.85
1167 1182 1.251527 GCTTCTCCTCGTCACCCTCA 61.252 60.000 0.00 0.00 0.00 3.86
1315 1330 1.898574 CTTGGGCGTGAACTTGGCT 60.899 57.895 0.00 0.00 0.00 4.75
1633 1648 0.036010 AGCCATGGAGAAGGACGTTG 60.036 55.000 18.40 0.00 0.00 4.10
1693 1708 1.782028 GCTTGTTCTCCGTGGCGTTT 61.782 55.000 0.00 0.00 0.00 3.60
1938 1953 1.985895 CCTTGGGGTTCAGGTACTTCT 59.014 52.381 0.00 0.00 34.60 2.85
1940 1955 1.985895 CTCCTTGGGGTTCAGGTACTT 59.014 52.381 0.00 0.00 34.60 2.24
2155 2170 2.475111 CGTGCTTATAATGTCGGCGAAT 59.525 45.455 12.92 3.72 0.00 3.34
2314 2329 1.138069 ACGTCGATGATAATGTGGCCA 59.862 47.619 12.58 0.00 0.00 5.36
2797 2815 1.314867 GATCCTGGACCCCTCCTCA 59.685 63.158 0.00 0.00 37.48 3.86
3106 3124 2.762043 TCGCGGTGGATGATCCCA 60.762 61.111 9.36 0.00 35.03 4.37
3817 3873 2.663478 GCGCACGGATTGACGAACA 61.663 57.895 0.30 0.00 37.61 3.18
3883 3943 6.075315 TGAGTTATGATCGGATCCTTCCTTA 58.925 40.000 15.06 1.39 40.17 2.69
3921 3984 4.912187 CACACATATACACTCTTCGATCGG 59.088 45.833 16.41 0.89 0.00 4.18
4114 4183 6.939163 ACCAGTGATATTATGAGAAATGAGCC 59.061 38.462 0.00 0.00 0.00 4.70
4143 4212 1.616865 GCCGGGACTAAAAGCCTTTTT 59.383 47.619 7.88 0.87 39.69 1.94
4144 4213 1.203013 AGCCGGGACTAAAAGCCTTTT 60.203 47.619 7.68 7.68 36.67 2.27
4145 4214 0.404426 AGCCGGGACTAAAAGCCTTT 59.596 50.000 2.18 0.00 0.00 3.11
4146 4215 0.322546 CAGCCGGGACTAAAAGCCTT 60.323 55.000 2.18 0.00 0.00 4.35
4147 4216 1.299976 CAGCCGGGACTAAAAGCCT 59.700 57.895 2.18 0.00 0.00 4.58
4148 4217 1.002502 ACAGCCGGGACTAAAAGCC 60.003 57.895 2.18 0.00 0.00 4.35
4149 4218 1.923227 GCACAGCCGGGACTAAAAGC 61.923 60.000 2.18 0.00 0.00 3.51
4150 4219 0.605319 TGCACAGCCGGGACTAAAAG 60.605 55.000 2.18 0.00 0.00 2.27
4151 4220 0.179015 TTGCACAGCCGGGACTAAAA 60.179 50.000 2.18 0.00 0.00 1.52
4205 4275 0.376152 TCGTAAGAGGCGCGACTAAG 59.624 55.000 18.29 0.89 45.01 2.18
4689 4761 0.099968 CGACGGATAACTTGCGGAGA 59.900 55.000 0.00 0.00 44.44 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.