Multiple sequence alignment - TraesCS7D01G049000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G049000 chr7D 100.000 8654 0 0 1 8654 25269133 25277786 0.000000e+00 15982
1 TraesCS7D01G049000 chr7D 84.743 1927 239 31 2532 4436 25190678 25192571 0.000000e+00 1879
2 TraesCS7D01G049000 chr7D 82.647 1919 276 26 2548 4438 24947594 24945705 0.000000e+00 1646
3 TraesCS7D01G049000 chr7D 91.512 648 43 6 1094 1736 24949654 24949014 0.000000e+00 881
4 TraesCS7D01G049000 chr7D 84.273 763 86 15 7560 8306 25285620 25286364 0.000000e+00 713
5 TraesCS7D01G049000 chr7A 87.023 4508 432 92 2395 6802 26043777 26048231 0.000000e+00 4942
6 TraesCS7D01G049000 chr7A 85.018 1929 234 34 2532 4436 26031493 26033390 0.000000e+00 1910
7 TraesCS7D01G049000 chr7A 82.003 1917 278 32 2548 4431 25752555 25750673 0.000000e+00 1567
8 TraesCS7D01G049000 chr7A 81.719 1920 277 39 2548 4431 37720391 37722272 0.000000e+00 1533
9 TraesCS7D01G049000 chr7A 90.259 1160 67 24 7525 8652 26049363 26050508 0.000000e+00 1474
10 TraesCS7D01G049000 chr7A 89.189 1184 62 30 909 2053 26039269 26040425 0.000000e+00 1417
11 TraesCS7D01G049000 chr7A 92.076 631 44 2 1106 1736 25754918 25754294 0.000000e+00 883
12 TraesCS7D01G049000 chr7A 91.979 561 41 3 1205 1763 26030125 26030683 0.000000e+00 784
13 TraesCS7D01G049000 chr7A 86.284 627 58 14 221 824 26036453 26037074 0.000000e+00 656
14 TraesCS7D01G049000 chr7A 78.966 851 111 34 7784 8575 26099657 26100498 1.290000e-142 518
15 TraesCS7D01G049000 chr7A 97.403 77 2 0 2190 2266 26040930 26041006 1.960000e-26 132
16 TraesCS7D01G049000 chrUn 87.323 1909 119 51 57 1877 332754720 332752847 0.000000e+00 2071
17 TraesCS7D01G049000 chrUn 86.240 1548 161 34 3708 5223 50424641 50426168 0.000000e+00 1631
18 TraesCS7D01G049000 chrUn 94.915 531 27 0 2613 3143 474278491 474277961 0.000000e+00 832
19 TraesCS7D01G049000 chrUn 90.273 586 49 4 3145 3722 50424007 50424592 0.000000e+00 760
20 TraesCS7D01G049000 chrUn 85.007 747 79 18 3262 3995 468581920 468582646 0.000000e+00 728
21 TraesCS7D01G049000 chrUn 84.218 735 108 6 2532 3261 332282904 332283635 0.000000e+00 708
22 TraesCS7D01G049000 chrUn 92.344 209 12 3 8341 8549 470559164 470558960 2.360000e-75 294
23 TraesCS7D01G049000 chrUn 87.500 120 7 6 2369 2485 332752236 332752122 1.960000e-26 132
24 TraesCS7D01G049000 chrUn 90.722 97 8 1 2516 2611 332752122 332752026 2.540000e-25 128
25 TraesCS7D01G049000 chr4A 93.495 1199 64 10 4218 5411 709201360 709202549 0.000000e+00 1770
26 TraesCS7D01G049000 chr4A 81.875 1920 278 37 2548 4431 708612438 708614323 0.000000e+00 1554
27 TraesCS7D01G049000 chr4A 92.165 753 42 8 1123 1874 709199245 709199981 0.000000e+00 1048
28 TraesCS7D01G049000 chr4A 86.775 862 76 26 1041 1873 708610267 708611119 0.000000e+00 926
29 TraesCS7D01G049000 chr4A 90.923 639 36 6 7430 8057 709203186 709203813 0.000000e+00 839
30 TraesCS7D01G049000 chr4A 83.307 635 66 21 200 803 709171089 709171714 4.570000e-152 549
31 TraesCS7D01G049000 chr4A 82.702 607 77 14 7715 8306 709264430 709265023 1.670000e-141 514
32 TraesCS7D01G049000 chr4A 91.826 367 19 7 7057 7419 709202848 709203207 1.300000e-137 501
33 TraesCS7D01G049000 chr4A 81.212 660 75 25 172 800 709169400 709170041 3.630000e-133 486
34 TraesCS7D01G049000 chr4A 81.518 606 83 14 7715 8306 709262869 709263459 1.020000e-128 472
35 TraesCS7D01G049000 chr4A 83.708 534 45 20 299 800 709167862 709168385 4.730000e-127 466
36 TraesCS7D01G049000 chr4A 84.802 454 52 12 221 667 709191565 709192008 2.870000e-119 440
37 TraesCS7D01G049000 chr4A 90.037 271 16 8 6812 7074 709202559 709202826 2.990000e-89 340
38 TraesCS7D01G049000 chr4A 86.182 275 27 6 8091 8356 709203818 709204090 3.950000e-73 287
39 TraesCS7D01G049000 chr4A 83.077 195 20 5 902 1083 709195470 709195664 1.930000e-36 165
40 TraesCS7D01G049000 chr6B 80.100 1206 189 31 2548 3705 125727648 125728850 0.000000e+00 850
41 TraesCS7D01G049000 chr6B 93.236 547 37 0 1191 1737 125725312 125725858 0.000000e+00 806
42 TraesCS7D01G049000 chr6B 86.786 613 79 2 3814 4425 125728988 125729599 0.000000e+00 682
43 TraesCS7D01G049000 chr6D 93.260 549 33 3 1191 1737 55882267 55882813 0.000000e+00 806
44 TraesCS7D01G049000 chr6D 81.685 546 76 10 3183 3705 55894498 55895042 4.800000e-117 433
45 TraesCS7D01G049000 chr5D 86.441 118 15 1 14 131 365318514 365318398 2.540000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G049000 chr7D 25269133 25277786 8653 False 15982.000000 15982 100.000000 1 8654 1 chr7D.!!$F2 8653
1 TraesCS7D01G049000 chr7D 25190678 25192571 1893 False 1879.000000 1879 84.743000 2532 4436 1 chr7D.!!$F1 1904
2 TraesCS7D01G049000 chr7D 24945705 24949654 3949 True 1263.500000 1646 87.079500 1094 4438 2 chr7D.!!$R1 3344
3 TraesCS7D01G049000 chr7D 25285620 25286364 744 False 713.000000 713 84.273000 7560 8306 1 chr7D.!!$F3 746
4 TraesCS7D01G049000 chr7A 26030125 26050508 20383 False 1616.428571 4942 89.593571 221 8652 7 chr7A.!!$F3 8431
5 TraesCS7D01G049000 chr7A 37720391 37722272 1881 False 1533.000000 1533 81.719000 2548 4431 1 chr7A.!!$F2 1883
6 TraesCS7D01G049000 chr7A 25750673 25754918 4245 True 1225.000000 1567 87.039500 1106 4431 2 chr7A.!!$R1 3325
7 TraesCS7D01G049000 chr7A 26099657 26100498 841 False 518.000000 518 78.966000 7784 8575 1 chr7A.!!$F1 791
8 TraesCS7D01G049000 chrUn 50424007 50426168 2161 False 1195.500000 1631 88.256500 3145 5223 2 chrUn.!!$F3 2078
9 TraesCS7D01G049000 chrUn 474277961 474278491 530 True 832.000000 832 94.915000 2613 3143 1 chrUn.!!$R2 530
10 TraesCS7D01G049000 chrUn 332752026 332754720 2694 True 777.000000 2071 88.515000 57 2611 3 chrUn.!!$R3 2554
11 TraesCS7D01G049000 chrUn 468581920 468582646 726 False 728.000000 728 85.007000 3262 3995 1 chrUn.!!$F2 733
12 TraesCS7D01G049000 chrUn 332282904 332283635 731 False 708.000000 708 84.218000 2532 3261 1 chrUn.!!$F1 729
13 TraesCS7D01G049000 chr4A 708610267 708614323 4056 False 1240.000000 1554 84.325000 1041 4431 2 chr4A.!!$F1 3390
14 TraesCS7D01G049000 chr4A 709191565 709204090 12525 False 673.750000 1770 89.063375 221 8356 8 chr4A.!!$F3 8135
15 TraesCS7D01G049000 chr4A 709167862 709171714 3852 False 500.333333 549 82.742333 172 803 3 chr4A.!!$F2 631
16 TraesCS7D01G049000 chr4A 709262869 709265023 2154 False 493.000000 514 82.110000 7715 8306 2 chr4A.!!$F4 591
17 TraesCS7D01G049000 chr6B 125725312 125729599 4287 False 779.333333 850 86.707333 1191 4425 3 chr6B.!!$F1 3234
18 TraesCS7D01G049000 chr6D 55882267 55882813 546 False 806.000000 806 93.260000 1191 1737 1 chr6D.!!$F1 546
19 TraesCS7D01G049000 chr6D 55894498 55895042 544 False 433.000000 433 81.685000 3183 3705 1 chr6D.!!$F2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 7072 0.179004 ACTCCCACCGATGTTGCAAA 60.179 50.0 0.0 0.0 0.00 3.68 F
1091 12366 0.179202 CTCGTCGTCTCTGCTGTCTG 60.179 60.0 0.0 0.0 0.00 3.51 F
2266 18863 0.099436 GTGCGGCACATGAGGATTTC 59.901 55.0 27.1 0.0 34.08 2.17 F
2311 21598 0.043310 GCGCATACGTCAATCCGAAC 60.043 55.0 0.3 0.0 42.83 3.95 F
3756 23843 0.036010 CATTTCCGCTCCACCAGAGT 60.036 55.0 0.0 0.0 45.21 3.24 F
3757 23844 0.250513 ATTTCCGCTCCACCAGAGTC 59.749 55.0 0.0 0.0 45.21 3.36 F
5113 25718 0.249238 CGCCTCTCTGGAGTATGTGC 60.249 60.0 0.0 0.0 37.86 4.57 F
5768 26431 0.250295 TTCGCAAGGTCAAGGACAGG 60.250 55.0 0.0 0.0 33.68 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 17484 0.033781 TTACAACTGTTCGGACCGGG 59.966 55.0 15.25 4.89 0.00 5.73 R
2292 21479 0.043310 GTTCGGATTGACGTATGCGC 60.043 55.0 0.00 0.00 42.83 6.09 R
3342 23328 0.179100 GCTGGAGCTGCTCGATGTAA 60.179 55.0 22.25 4.03 38.21 2.41 R
3906 24045 0.390472 GGTTGTCCGCTGAGAGAAGG 60.390 60.0 0.00 0.00 0.00 3.46 R
5113 25718 0.246635 ATCTCGTGGGTGAAGGAACG 59.753 55.0 0.00 0.00 37.38 3.95 R
5613 26275 0.248866 AACCTTTTCAACAAGCGCGG 60.249 50.0 8.83 0.00 0.00 6.46 R
5939 26613 0.248784 GCGCTCCCATCATCTTTTGC 60.249 55.0 0.00 0.00 0.00 3.68 R
7717 28889 0.108585 TGGGTGCTCTTCCTGTTGTC 59.891 55.0 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.306199 TGGATATTTCATCCAACACATAGGG 58.694 40.000 3.49 0.00 44.54 3.53
33 34 5.183904 GGATATTTCATCCAACACATAGGGC 59.816 44.000 0.00 0.00 38.09 5.19
35 36 0.463654 TCATCCAACACATAGGGCGC 60.464 55.000 0.00 0.00 0.00 6.53
38 39 2.173669 CCAACACATAGGGCGCGAG 61.174 63.158 12.10 0.00 0.00 5.03
39 40 2.173669 CAACACATAGGGCGCGAGG 61.174 63.158 12.10 0.00 0.00 4.63
40 41 2.656069 AACACATAGGGCGCGAGGT 61.656 57.895 12.10 0.00 0.00 3.85
42 43 3.075005 ACATAGGGCGCGAGGTGT 61.075 61.111 12.10 3.53 0.00 4.16
44 45 1.113517 ACATAGGGCGCGAGGTGTAT 61.114 55.000 12.10 0.00 0.00 2.29
45 46 0.885879 CATAGGGCGCGAGGTGTATA 59.114 55.000 12.10 0.00 0.00 1.47
46 47 1.476891 CATAGGGCGCGAGGTGTATAT 59.523 52.381 12.10 0.00 0.00 0.86
47 48 1.171308 TAGGGCGCGAGGTGTATATC 58.829 55.000 12.10 0.00 0.00 1.63
50 51 1.443872 GCGCGAGGTGTATATCCGG 60.444 63.158 12.10 0.00 0.00 5.14
52 53 1.590147 GCGAGGTGTATATCCGGGG 59.410 63.158 0.00 0.00 0.00 5.73
53 54 1.885163 GCGAGGTGTATATCCGGGGG 61.885 65.000 0.00 0.00 0.00 5.40
54 55 0.251474 CGAGGTGTATATCCGGGGGA 60.251 60.000 0.00 0.00 35.55 4.81
70 71 1.153229 GGAGTTGGACATACCGGGC 60.153 63.158 6.32 0.00 42.61 6.13
74 75 3.338275 TTGGACATACCGGGCTGGC 62.338 63.158 13.63 4.28 43.94 4.85
116 117 3.379865 GATTGCGGTAGGGTCGGCA 62.380 63.158 0.00 0.00 40.75 5.69
141 142 1.613928 TGGGTTGGGGACGATAGCA 60.614 57.895 0.00 0.00 42.67 3.49
153 154 3.435327 GGACGATAGCACAACAACAATGA 59.565 43.478 0.00 0.00 42.67 2.57
154 155 4.094887 GGACGATAGCACAACAACAATGAT 59.905 41.667 0.00 0.00 42.67 2.45
168 169 3.153919 ACAATGATGGCAAAACTACCGT 58.846 40.909 0.00 0.00 0.00 4.83
215 216 3.230976 GGGGTGGTCTTCAAGTGAATTT 58.769 45.455 0.00 0.00 33.01 1.82
219 220 4.044426 GTGGTCTTCAAGTGAATTTGTGC 58.956 43.478 0.00 0.00 33.01 4.57
247 6768 1.621814 TGCGGTTAGTCCTATATGGCC 59.378 52.381 0.00 0.00 35.26 5.36
255 6776 1.006571 CCTATATGGCCGACGCGTT 60.007 57.895 15.53 0.00 35.02 4.84
257 6778 0.318360 CTATATGGCCGACGCGTTCA 60.318 55.000 15.53 10.57 35.02 3.18
308 6829 1.202533 CGAATATGAGGACTGCCGGTT 60.203 52.381 1.90 0.00 39.96 4.44
347 6868 4.014569 TGAATTTGTCTGGTCCGATTGA 57.985 40.909 0.00 0.00 0.00 2.57
352 6873 0.895530 GTCTGGTCCGATTGAGTGGA 59.104 55.000 0.00 0.00 0.00 4.02
372 6897 4.263639 TGGATCTTTTCTGTTCAGGCAGAT 60.264 41.667 0.00 4.95 43.99 2.90
418 6943 2.723322 AGGCTTCATTGCAGATGCTA 57.277 45.000 6.35 0.00 42.66 3.49
431 6956 2.486982 CAGATGCTATAACCAGCCATGC 59.513 50.000 0.00 0.00 41.04 4.06
435 6960 1.466167 GCTATAACCAGCCATGCATCG 59.534 52.381 0.00 0.00 35.40 3.84
436 6961 1.466167 CTATAACCAGCCATGCATCGC 59.534 52.381 8.39 8.39 0.00 4.58
437 6962 0.466007 ATAACCAGCCATGCATCGCA 60.466 50.000 18.76 0.00 44.86 5.10
449 6974 1.227060 CATCGCATGGCTCTCGTCA 60.227 57.895 0.00 0.00 0.00 4.35
546 7072 0.179004 ACTCCCACCGATGTTGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
631 7168 5.064198 CCGTACAAAACATCATATTCGGTGT 59.936 40.000 0.00 0.00 0.00 4.16
713 7287 6.909895 TGTTTTCTGATGTAAAATGTGTGACG 59.090 34.615 0.00 0.00 0.00 4.35
775 7354 6.707440 TTATGTCTGCAAAGTTTCCTTTCA 57.293 33.333 0.00 0.00 38.87 2.69
845 7460 0.318445 ATTAGGGCGTACGCATCGTC 60.318 55.000 37.99 21.85 44.11 4.20
846 7461 2.651367 TTAGGGCGTACGCATCGTCG 62.651 60.000 37.99 1.19 44.11 5.12
904 7519 2.547913 CGTGCAATGCAGAGCAATAA 57.452 45.000 8.73 0.00 43.62 1.40
906 7521 3.244156 CGTGCAATGCAGAGCAATAAAA 58.756 40.909 8.73 0.00 43.62 1.52
958 12223 0.464452 AGAAGAATTACCGCGGAGGG 59.536 55.000 35.90 5.06 46.96 4.30
959 12224 1.153229 AAGAATTACCGCGGAGGGC 60.153 57.895 35.90 16.50 46.96 5.19
983 12248 4.683334 GAACGCCAGCCACGCAAC 62.683 66.667 0.00 0.00 0.00 4.17
987 12252 2.355009 GCCAGCCACGCAACAAAG 60.355 61.111 0.00 0.00 0.00 2.77
989 12254 2.192861 CCAGCCACGCAACAAAGGA 61.193 57.895 0.00 0.00 0.00 3.36
990 12255 1.283793 CAGCCACGCAACAAAGGAG 59.716 57.895 0.00 0.00 0.00 3.69
1049 12324 3.838271 GGAGCTCGATGGCGACCA 61.838 66.667 7.83 1.01 42.51 4.02
1054 12329 1.439228 CTCGATGGCGACCACATCT 59.561 57.895 0.50 0.00 42.51 2.90
1076 12351 2.348888 CCCCACTCCGTAAGCTCGT 61.349 63.158 0.00 0.00 0.00 4.18
1083 12358 0.390866 TCCGTAAGCTCGTCGTCTCT 60.391 55.000 0.00 0.00 0.00 3.10
1087 12362 0.448197 TAAGCTCGTCGTCTCTGCTG 59.552 55.000 0.00 0.00 33.96 4.41
1088 12363 1.519751 AAGCTCGTCGTCTCTGCTGT 61.520 55.000 0.00 0.00 33.96 4.40
1091 12366 0.179202 CTCGTCGTCTCTGCTGTCTG 60.179 60.000 0.00 0.00 0.00 3.51
1092 12367 1.799519 CGTCGTCTCTGCTGTCTGC 60.800 63.158 0.00 0.00 43.25 4.26
1095 12370 1.445754 CGTCTCTGCTGTCTGCCTG 60.446 63.158 0.00 0.00 42.00 4.85
1096 12371 1.741032 GTCTCTGCTGTCTGCCTGC 60.741 63.158 0.00 0.00 42.00 4.85
1477 16308 1.052124 ACGAGTTCACCCTCAACCCA 61.052 55.000 0.00 0.00 0.00 4.51
1771 16617 1.534595 CCGGCAAGCAACATGATTAGC 60.535 52.381 0.00 0.00 0.00 3.09
1774 16620 3.442100 GGCAAGCAACATGATTAGCTTC 58.558 45.455 0.00 4.06 44.77 3.86
1782 16638 3.347216 ACATGATTAGCTTCAACCGCTT 58.653 40.909 0.00 0.00 38.86 4.68
1783 16639 4.513442 ACATGATTAGCTTCAACCGCTTA 58.487 39.130 0.00 0.00 38.86 3.09
1784 16640 5.126067 ACATGATTAGCTTCAACCGCTTAT 58.874 37.500 0.00 0.00 38.86 1.73
1803 16660 9.203421 CCGCTTATATTAGTCATCACATTACAA 57.797 33.333 0.00 0.00 0.00 2.41
1956 17199 5.360714 TCTTTGATTTGGTTGAGCAAAGACT 59.639 36.000 11.97 0.00 45.36 3.24
1957 17200 6.545666 TCTTTGATTTGGTTGAGCAAAGACTA 59.454 34.615 11.97 5.52 45.36 2.59
1958 17201 6.899393 TTGATTTGGTTGAGCAAAGACTAT 57.101 33.333 13.00 0.00 0.00 2.12
1959 17202 6.899393 TGATTTGGTTGAGCAAAGACTATT 57.101 33.333 13.00 0.00 0.00 1.73
1977 17227 2.988010 TTCATGGCTAGCTACCTGTG 57.012 50.000 15.72 3.74 0.00 3.66
1978 17228 1.123077 TCATGGCTAGCTACCTGTGG 58.877 55.000 15.72 0.00 0.00 4.17
1979 17229 1.123077 CATGGCTAGCTACCTGTGGA 58.877 55.000 15.72 0.00 0.00 4.02
1980 17230 1.696336 CATGGCTAGCTACCTGTGGAT 59.304 52.381 15.72 0.00 0.00 3.41
1982 17232 1.342975 TGGCTAGCTACCTGTGGATCA 60.343 52.381 15.72 0.00 0.00 2.92
1983 17233 1.974236 GGCTAGCTACCTGTGGATCAT 59.026 52.381 15.72 0.00 0.00 2.45
1984 17234 2.289320 GGCTAGCTACCTGTGGATCATG 60.289 54.545 15.72 0.00 0.00 3.07
1985 17235 2.630098 GCTAGCTACCTGTGGATCATGA 59.370 50.000 7.70 0.00 0.00 3.07
1987 17237 2.756907 AGCTACCTGTGGATCATGAGT 58.243 47.619 0.09 0.00 0.00 3.41
1988 17238 3.110705 AGCTACCTGTGGATCATGAGTT 58.889 45.455 0.09 0.00 0.00 3.01
1989 17239 4.290093 AGCTACCTGTGGATCATGAGTTA 58.710 43.478 0.09 0.00 0.00 2.24
2053 17430 2.498885 GAGGGAAGTAGCCGGTTCTAAA 59.501 50.000 1.90 0.00 0.00 1.85
2054 17431 3.113043 AGGGAAGTAGCCGGTTCTAAAT 58.887 45.455 1.90 0.00 0.00 1.40
2055 17432 3.522343 AGGGAAGTAGCCGGTTCTAAATT 59.478 43.478 1.90 0.00 0.00 1.82
2056 17433 3.875727 GGGAAGTAGCCGGTTCTAAATTC 59.124 47.826 1.90 5.24 0.00 2.17
2057 17434 4.510571 GGAAGTAGCCGGTTCTAAATTCA 58.489 43.478 1.90 0.00 0.00 2.57
2058 17435 4.939439 GGAAGTAGCCGGTTCTAAATTCAA 59.061 41.667 1.90 0.00 0.00 2.69
2059 17436 5.589050 GGAAGTAGCCGGTTCTAAATTCAAT 59.411 40.000 1.90 0.00 0.00 2.57
2069 17446 7.703621 CCGGTTCTAAATTCAATAGTACTTCGA 59.296 37.037 0.00 0.00 0.00 3.71
2079 17456 8.801882 TTCAATAGTACTTCGATGGGATTTTT 57.198 30.769 0.00 0.00 0.00 1.94
2082 17459 8.458843 CAATAGTACTTCGATGGGATTTTTGTT 58.541 33.333 0.00 0.00 0.00 2.83
2083 17460 6.254281 AGTACTTCGATGGGATTTTTGTTG 57.746 37.500 3.12 0.00 0.00 3.33
2086 17463 4.772100 ACTTCGATGGGATTTTTGTTGGAT 59.228 37.500 3.12 0.00 0.00 3.41
2087 17464 4.717233 TCGATGGGATTTTTGTTGGATG 57.283 40.909 0.00 0.00 0.00 3.51
2088 17465 3.446873 TCGATGGGATTTTTGTTGGATGG 59.553 43.478 0.00 0.00 0.00 3.51
2089 17466 3.534554 GATGGGATTTTTGTTGGATGGC 58.465 45.455 0.00 0.00 0.00 4.40
2090 17467 2.618794 TGGGATTTTTGTTGGATGGCT 58.381 42.857 0.00 0.00 0.00 4.75
2093 17470 3.599343 GGATTTTTGTTGGATGGCTTCC 58.401 45.455 12.30 12.30 45.69 3.46
2102 17479 2.436646 ATGGCTTCCGCGGTTCAG 60.437 61.111 27.15 19.86 36.88 3.02
2103 17480 2.852495 GATGGCTTCCGCGGTTCAGA 62.852 60.000 27.15 8.26 36.88 3.27
2104 17481 2.125106 GGCTTCCGCGGTTCAGAT 60.125 61.111 27.15 0.00 36.88 2.90
2107 17484 1.491505 GCTTCCGCGGTTCAGATAGC 61.492 60.000 27.15 17.89 0.00 2.97
2108 17485 0.876342 CTTCCGCGGTTCAGATAGCC 60.876 60.000 27.15 0.00 0.00 3.93
2113 17490 1.067582 CGGTTCAGATAGCCCGGTC 59.932 63.158 0.00 0.00 36.84 4.79
2115 17492 1.067582 GTTCAGATAGCCCGGTCCG 59.932 63.158 3.60 3.60 0.00 4.79
2118 17495 1.067582 CAGATAGCCCGGTCCGAAC 59.932 63.158 14.39 3.89 0.00 3.95
2119 17496 1.380785 AGATAGCCCGGTCCGAACA 60.381 57.895 14.39 0.00 0.00 3.18
2120 17497 1.067582 GATAGCCCGGTCCGAACAG 59.932 63.158 14.39 0.00 0.00 3.16
2123 17500 2.162338 TAGCCCGGTCCGAACAGTTG 62.162 60.000 14.39 0.00 0.00 3.16
2124 17501 2.424302 CCCGGTCCGAACAGTTGT 59.576 61.111 14.39 0.00 0.00 3.32
2129 17506 1.269936 CGGTCCGAACAGTTGTAAGGT 60.270 52.381 4.91 0.00 0.00 3.50
2132 17509 4.379652 GGTCCGAACAGTTGTAAGGTTTA 58.620 43.478 0.00 0.00 0.00 2.01
2133 17510 4.212004 GGTCCGAACAGTTGTAAGGTTTAC 59.788 45.833 0.00 0.00 0.00 2.01
2135 17512 3.184986 CCGAACAGTTGTAAGGTTTACCG 59.815 47.826 0.00 0.00 42.08 4.02
2138 17515 3.732212 ACAGTTGTAAGGTTTACCGGTC 58.268 45.455 12.40 0.00 42.08 4.79
2139 17516 3.069289 CAGTTGTAAGGTTTACCGGTCC 58.931 50.000 12.40 6.52 42.08 4.46
2152 17529 2.025898 ACCGGTCCGTTTTGAAAATGT 58.974 42.857 11.06 0.00 0.00 2.71
2154 17531 2.292292 CCGGTCCGTTTTGAAAATGTCT 59.708 45.455 11.06 0.00 0.00 3.41
2157 17534 5.505985 CCGGTCCGTTTTGAAAATGTCTTTA 60.506 40.000 11.06 0.00 0.00 1.85
2158 17535 5.397240 CGGTCCGTTTTGAAAATGTCTTTAC 59.603 40.000 2.08 0.41 0.00 2.01
2159 17536 5.688621 GGTCCGTTTTGAAAATGTCTTTACC 59.311 40.000 8.84 5.02 0.00 2.85
2160 17537 5.688621 GTCCGTTTTGAAAATGTCTTTACCC 59.311 40.000 8.84 0.00 0.00 3.69
2162 17539 6.041069 TCCGTTTTGAAAATGTCTTTACCCAT 59.959 34.615 8.84 0.00 0.00 4.00
2163 17540 6.145371 CCGTTTTGAAAATGTCTTTACCCATG 59.855 38.462 8.84 0.00 0.00 3.66
2164 17541 6.346518 CGTTTTGAAAATGTCTTTACCCATGC 60.347 38.462 1.79 0.00 0.00 4.06
2167 17544 4.279671 TGAAAATGTCTTTACCCATGCGTT 59.720 37.500 0.00 0.00 0.00 4.84
2168 17545 4.864704 AAATGTCTTTACCCATGCGTTT 57.135 36.364 0.00 0.00 0.00 3.60
2169 17546 4.434713 AATGTCTTTACCCATGCGTTTC 57.565 40.909 0.00 0.00 0.00 2.78
2182 17559 2.785258 GTTTCGCATCCCTCACGC 59.215 61.111 0.00 0.00 0.00 5.34
2184 17561 2.032634 TTTCGCATCCCTCACGCAC 61.033 57.895 0.00 0.00 0.00 5.34
2185 17562 4.794439 TCGCATCCCTCACGCACG 62.794 66.667 0.00 0.00 0.00 5.34
2231 18828 2.350895 CCATGTTGGACCGCCTCA 59.649 61.111 0.00 0.00 40.96 3.86
2261 18858 3.190849 CGAGTGCGGCACATGAGG 61.191 66.667 32.29 13.81 36.74 3.86
2266 18863 0.099436 GTGCGGCACATGAGGATTTC 59.901 55.000 27.10 0.00 34.08 2.17
2267 18864 1.031571 TGCGGCACATGAGGATTTCC 61.032 55.000 0.00 0.00 0.00 3.13
2270 18867 1.103398 GGCACATGAGGATTTCCCCG 61.103 60.000 0.00 0.00 36.42 5.73
2272 18869 1.103398 CACATGAGGATTTCCCCGCC 61.103 60.000 0.00 0.00 36.42 6.13
2273 18870 1.227102 CATGAGGATTTCCCCGCCA 59.773 57.895 0.00 0.00 36.42 5.69
2274 18871 0.178981 CATGAGGATTTCCCCGCCAT 60.179 55.000 0.00 0.00 36.42 4.40
2275 18872 0.178981 ATGAGGATTTCCCCGCCATG 60.179 55.000 0.00 0.00 36.42 3.66
2279 21466 1.103398 GGATTTCCCCGCCATGTCAG 61.103 60.000 0.00 0.00 0.00 3.51
2302 21489 3.017314 CTCGTCGGCGCATACGTC 61.017 66.667 26.19 11.54 42.83 4.34
2305 21592 2.228241 CGTCGGCGCATACGTCAAT 61.228 57.895 21.34 0.00 46.71 2.57
2307 21594 1.590525 TCGGCGCATACGTCAATCC 60.591 57.895 10.83 0.00 46.71 3.01
2311 21598 0.043310 GCGCATACGTCAATCCGAAC 60.043 55.000 0.30 0.00 42.83 3.95
2313 21600 1.858458 CGCATACGTCAATCCGAACAT 59.142 47.619 0.00 0.00 33.53 2.71
2322 21609 6.311723 ACGTCAATCCGAACATAATTTTGAC 58.688 36.000 2.69 3.76 38.57 3.18
2341 21629 4.922206 TGACTGTATTTGCTCCCTCAAAT 58.078 39.130 6.89 6.89 45.49 2.32
2385 21837 6.260700 AGCAATTTAGGACATGTATACCCA 57.739 37.500 0.00 0.00 0.00 4.51
2391 21843 8.887264 ATTTAGGACATGTATACCCACAAAAA 57.113 30.769 0.00 0.00 30.84 1.94
2437 21891 2.536761 TTCCTTCCGTGTGGTTAGTG 57.463 50.000 0.00 0.00 36.30 2.74
2441 21895 2.037511 CCTTCCGTGTGGTTAGTGGTTA 59.962 50.000 0.00 0.00 36.30 2.85
2442 21896 3.323243 CTTCCGTGTGGTTAGTGGTTAG 58.677 50.000 0.00 0.00 36.30 2.34
2443 21897 2.318908 TCCGTGTGGTTAGTGGTTAGT 58.681 47.619 0.00 0.00 36.30 2.24
2444 21898 2.699846 TCCGTGTGGTTAGTGGTTAGTT 59.300 45.455 0.00 0.00 36.30 2.24
2445 21899 2.803956 CCGTGTGGTTAGTGGTTAGTTG 59.196 50.000 0.00 0.00 0.00 3.16
2446 21900 3.460103 CGTGTGGTTAGTGGTTAGTTGT 58.540 45.455 0.00 0.00 0.00 3.32
2466 21920 6.430000 AGTTGTCGCCAATGTAATTTACTCTT 59.570 34.615 7.99 0.00 31.22 2.85
2469 21923 7.970384 TGTCGCCAATGTAATTTACTCTTAAG 58.030 34.615 7.99 0.00 31.22 1.85
2571 22518 2.350522 GCGCTCCATGAGAAAGAAAGA 58.649 47.619 0.00 0.00 0.00 2.52
2574 22521 3.330267 GCTCCATGAGAAAGAAAGACGT 58.670 45.455 0.00 0.00 0.00 4.34
2623 22570 2.709125 CTTCCTGGTGGCGTTCGTCA 62.709 60.000 0.00 0.00 0.00 4.35
2625 22572 2.029073 CTGGTGGCGTTCGTCAGT 59.971 61.111 0.00 0.00 0.00 3.41
2717 22664 1.352622 TTCCCCCACTCAGTGCTTGT 61.353 55.000 0.00 0.00 31.34 3.16
2823 22770 1.831652 CTCTCGTCAGCCCCTGGTTT 61.832 60.000 0.00 0.00 31.51 3.27
3081 23028 1.404181 GGTGTCAGCTTCGCATCACTA 60.404 52.381 0.00 0.00 0.00 2.74
3174 23155 0.743345 GGTCGCGGCAACTAAGGATT 60.743 55.000 14.93 0.00 0.00 3.01
3235 23221 5.305128 AGATCAACATTTCAAGGGAAAAGCA 59.695 36.000 0.00 0.00 45.52 3.91
3342 23328 6.356556 TGCCACTATATTTGCTTGTGAGTAT 58.643 36.000 0.00 0.00 0.00 2.12
3392 23378 1.611673 GGGAGTACTGCTTGCATGTGT 60.612 52.381 14.52 3.99 0.00 3.72
3458 23448 4.149598 ACAACAAACCAGGTAAGGATTCC 58.850 43.478 0.00 0.00 0.00 3.01
3487 23499 1.604185 GCATGATCTAGAGCACCGGAC 60.604 57.143 13.91 0.00 0.00 4.79
3529 23549 2.038863 ATATGCAGACCCCGGGATTA 57.961 50.000 26.32 0.00 0.00 1.75
3547 23567 6.281405 GGGATTAAACATCGTCACAGAGTAT 58.719 40.000 0.00 0.00 0.00 2.12
3622 23642 5.181245 GGTTTACGGTTATATCAGCATGCAT 59.819 40.000 21.98 8.19 34.76 3.96
3629 23649 5.048224 GGTTATATCAGCATGCATCAAGCTT 60.048 40.000 21.98 0.00 45.94 3.74
3744 23831 7.925703 ATACGTAGTTTATCTGTCATTTCCG 57.074 36.000 0.08 0.00 37.78 4.30
3755 23842 0.250234 TCATTTCCGCTCCACCAGAG 59.750 55.000 0.00 0.00 46.29 3.35
3756 23843 0.036010 CATTTCCGCTCCACCAGAGT 60.036 55.000 0.00 0.00 45.21 3.24
3757 23844 0.250513 ATTTCCGCTCCACCAGAGTC 59.749 55.000 0.00 0.00 45.21 3.36
3758 23845 1.827399 TTTCCGCTCCACCAGAGTCC 61.827 60.000 0.00 0.00 45.21 3.85
3759 23846 2.997315 CCGCTCCACCAGAGTCCA 60.997 66.667 0.00 0.00 45.21 4.02
3760 23847 2.575993 CGCTCCACCAGAGTCCAG 59.424 66.667 0.00 0.00 45.21 3.86
3761 23848 1.979155 CGCTCCACCAGAGTCCAGA 60.979 63.158 0.00 0.00 45.21 3.86
3822 23961 4.223144 ACTTCTTGGTAAAATGGCAGGTT 58.777 39.130 0.00 0.00 0.00 3.50
3824 23963 2.298729 TCTTGGTAAAATGGCAGGTTGC 59.701 45.455 0.00 0.00 44.08 4.17
3906 24045 2.353011 CCCCAACATCTGCAACATTGAC 60.353 50.000 0.00 0.00 0.00 3.18
3927 24066 1.827399 TTCTCTCAGCGGACAACCCC 61.827 60.000 0.00 0.00 0.00 4.95
3987 24126 3.326588 CGGTCATATGGGGACTTATTGGA 59.673 47.826 2.13 0.00 35.61 3.53
4538 25117 7.440523 TCCTTTCAAAGATGAGAAAACTAGC 57.559 36.000 0.00 0.00 36.78 3.42
4626 25217 1.242989 TGCGAATAGGTTTTGCTGCA 58.757 45.000 0.00 0.00 0.00 4.41
4647 25238 5.161358 GCAAAGTTAACTATTGTTCTGGCC 58.839 41.667 21.20 0.00 37.59 5.36
4696 25288 5.313280 TGAAACCTAGGGAAAGCAGTTTA 57.687 39.130 14.81 0.00 0.00 2.01
4839 25438 2.112087 TGCTAGCAACGCCCAACA 59.888 55.556 16.84 0.00 0.00 3.33
5036 25641 4.939509 TTTGAGTTATAAGTTGCGCTCC 57.060 40.909 9.73 0.00 0.00 4.70
5113 25718 0.249238 CGCCTCTCTGGAGTATGTGC 60.249 60.000 0.00 0.00 37.86 4.57
5158 25763 2.038164 GGTACTGGACCGGTCTTCTTTT 59.962 50.000 32.52 14.26 38.87 2.27
5159 25764 2.256117 ACTGGACCGGTCTTCTTTTG 57.744 50.000 32.52 16.66 0.00 2.44
5288 25931 7.308435 AGTGTTTACAGAAAAATGCTCATAGC 58.692 34.615 0.00 0.00 42.82 2.97
5500 26161 9.926158 TGCAATAATGTGATGAATTGTTTTAGT 57.074 25.926 0.00 0.00 32.99 2.24
5547 26208 9.991388 AAAATGTGTTCACTCATTTGAAAATTG 57.009 25.926 16.70 0.00 44.40 2.32
5624 26286 1.220817 AAAAATGGCCGCGCTTGTTG 61.221 50.000 5.56 0.00 0.00 3.33
5629 26291 2.016165 GGCCGCGCTTGTTGAAAAG 61.016 57.895 5.56 0.00 0.00 2.27
5630 26292 2.016165 GCCGCGCTTGTTGAAAAGG 61.016 57.895 5.56 0.00 0.00 3.11
5639 26301 5.688176 GCGCTTGTTGAAAAGGTTTATGTAA 59.312 36.000 0.00 0.00 0.00 2.41
5640 26302 6.129194 GCGCTTGTTGAAAAGGTTTATGTAAG 60.129 38.462 0.00 0.00 0.00 2.34
5754 26417 7.821652 TCATGTTTTTAAAGGATGTATTCGCA 58.178 30.769 0.00 0.00 0.00 5.10
5759 26422 6.431198 TTTAAAGGATGTATTCGCAAGGTC 57.569 37.500 0.00 0.00 38.47 3.85
5768 26431 0.250295 TTCGCAAGGTCAAGGACAGG 60.250 55.000 0.00 0.00 33.68 4.00
5769 26432 1.071471 CGCAAGGTCAAGGACAGGT 59.929 57.895 0.00 0.00 33.68 4.00
5773 26436 2.930950 CAAGGTCAAGGACAGGTTTCA 58.069 47.619 0.00 0.00 33.68 2.69
5776 26439 4.287766 AGGTCAAGGACAGGTTTCATAC 57.712 45.455 0.00 0.00 33.68 2.39
5777 26440 3.650942 AGGTCAAGGACAGGTTTCATACA 59.349 43.478 0.00 0.00 33.68 2.29
5787 26450 9.975218 AGGACAGGTTTCATACACTAAAATATT 57.025 29.630 0.00 0.00 0.00 1.28
5813 26478 5.648960 AGAACGAAAAAGGAACAACAACCTA 59.351 36.000 0.00 0.00 35.25 3.08
5815 26480 5.643664 ACGAAAAAGGAACAACAACCTAAC 58.356 37.500 0.00 0.00 35.25 2.34
5822 26487 5.205056 AGGAACAACAACCTAACAAATGGA 58.795 37.500 0.00 0.00 34.47 3.41
5825 26490 6.478673 GGAACAACAACCTAACAAATGGAAAG 59.521 38.462 0.00 0.00 0.00 2.62
5830 26495 9.108284 CAACAACCTAACAAATGGAAAGAAAAT 57.892 29.630 0.00 0.00 0.00 1.82
5831 26496 9.679661 AACAACCTAACAAATGGAAAGAAAATT 57.320 25.926 0.00 0.00 0.00 1.82
5832 26497 9.108284 ACAACCTAACAAATGGAAAGAAAATTG 57.892 29.630 0.00 0.00 0.00 2.32
5833 26498 8.558700 CAACCTAACAAATGGAAAGAAAATTGG 58.441 33.333 0.00 0.00 0.00 3.16
5834 26499 6.710295 ACCTAACAAATGGAAAGAAAATTGGC 59.290 34.615 0.00 0.00 0.00 4.52
5836 26501 8.093927 CCTAACAAATGGAAAGAAAATTGGCTA 58.906 33.333 0.00 0.00 0.00 3.93
5837 26502 7.728847 AACAAATGGAAAGAAAATTGGCTAC 57.271 32.000 0.00 0.00 0.00 3.58
5873 26541 3.229552 GTGAGCGAAAGATTGCAAGAAC 58.770 45.455 4.94 0.00 38.53 3.01
5874 26542 2.877786 TGAGCGAAAGATTGCAAGAACA 59.122 40.909 4.94 0.00 38.53 3.18
5909 26582 5.599999 ACGAATCTAGTAAGAGGCAATGT 57.400 39.130 0.00 0.00 34.49 2.71
5917 26590 5.948992 AGTAAGAGGCAATGTGAGAAAAC 57.051 39.130 0.00 0.00 0.00 2.43
5939 26613 0.511221 CTTGTTGGGCGAGTTACGTG 59.489 55.000 0.00 0.00 44.60 4.49
5940 26614 1.500512 TTGTTGGGCGAGTTACGTGC 61.501 55.000 0.00 0.00 44.60 5.34
5945 26619 0.110373 GGGCGAGTTACGTGCAAAAG 60.110 55.000 0.00 0.00 44.60 2.27
5956 26630 1.202222 CGTGCAAAAGATGATGGGAGC 60.202 52.381 0.00 0.00 0.00 4.70
5962 26636 1.418334 AAGATGATGGGAGCGCTACT 58.582 50.000 21.30 0.00 0.00 2.57
5963 26637 1.418334 AGATGATGGGAGCGCTACTT 58.582 50.000 21.30 7.55 0.00 2.24
6010 26684 2.749621 CCACCTGTAACTCATTGGAAGC 59.250 50.000 0.00 0.00 33.40 3.86
6017 26691 3.340814 AACTCATTGGAAGCGAGATGT 57.659 42.857 0.00 0.00 0.00 3.06
6019 26693 4.471904 ACTCATTGGAAGCGAGATGTAA 57.528 40.909 0.00 0.00 0.00 2.41
6021 26695 5.431765 ACTCATTGGAAGCGAGATGTAAAT 58.568 37.500 0.00 0.00 0.00 1.40
6025 26699 1.261619 GGAAGCGAGATGTAAATGCGG 59.738 52.381 0.00 0.00 0.00 5.69
6028 26702 1.436195 GCGAGATGTAAATGCGGCCA 61.436 55.000 2.24 0.00 0.00 5.36
6090 26764 2.652662 GCTTTGCGACAGAATATCGG 57.347 50.000 0.00 0.00 39.99 4.18
6113 26787 5.803461 GGGATAACAAATAAACGGAGCAAAC 59.197 40.000 0.00 0.00 0.00 2.93
6136 26810 0.973496 GGCCCGCCCAAATTCCTTTA 60.973 55.000 0.00 0.00 0.00 1.85
6140 26814 2.176045 CCGCCCAAATTCCTTTACCTT 58.824 47.619 0.00 0.00 0.00 3.50
6159 26833 6.775594 ACCTTTTTCACTATATTGGGAAGC 57.224 37.500 2.14 0.00 0.00 3.86
6164 26838 9.396022 CTTTTTCACTATATTGGGAAGCTTCTA 57.604 33.333 25.05 12.49 0.00 2.10
6165 26839 9.920946 TTTTTCACTATATTGGGAAGCTTCTAT 57.079 29.630 25.05 16.61 0.00 1.98
6166 26840 9.920946 TTTTCACTATATTGGGAAGCTTCTATT 57.079 29.630 25.05 13.24 0.00 1.73
6176 26851 5.779771 TGGGAAGCTTCTATTGATGGTTTTT 59.220 36.000 25.05 0.00 37.91 1.94
6306 26981 9.918630 TTTTTGCCTTTTCAAAATGATCAAAAA 57.081 22.222 0.00 17.53 43.08 1.94
6356 27034 8.706492 TCATCAATTTTAAAATGCTCACCATC 57.294 30.769 14.04 0.00 31.43 3.51
6368 27046 5.801350 TGCTCACCATCTTAAAATCTTCG 57.199 39.130 0.00 0.00 0.00 3.79
6371 27049 5.220931 GCTCACCATCTTAAAATCTTCGCAT 60.221 40.000 0.00 0.00 0.00 4.73
6386 27064 8.600449 AATCTTCGCATATGGTTTTTGAAAAA 57.400 26.923 4.56 0.00 0.00 1.94
6388 27066 8.600449 TCTTCGCATATGGTTTTTGAAAAATT 57.400 26.923 6.35 0.00 0.00 1.82
6390 27068 7.357951 TCGCATATGGTTTTTGAAAAATTCC 57.642 32.000 6.35 4.89 0.00 3.01
6391 27069 6.931281 TCGCATATGGTTTTTGAAAAATTCCA 59.069 30.769 13.07 13.07 37.00 3.53
6392 27070 7.014702 CGCATATGGTTTTTGAAAAATTCCAC 58.985 34.615 12.99 0.00 36.15 4.02
6393 27071 7.307632 CGCATATGGTTTTTGAAAAATTCCACA 60.308 33.333 12.99 4.62 36.15 4.17
6394 27072 8.348507 GCATATGGTTTTTGAAAAATTCCACAA 58.651 29.630 12.99 6.98 36.15 3.33
6399 27077 9.018582 TGGTTTTTGAAAAATTCCACAATTCTT 57.981 25.926 6.35 0.00 30.37 2.52
6401 27079 9.288124 GTTTTTGAAAAATTCCACAATTCTTGG 57.712 29.630 6.35 0.00 30.37 3.61
6402 27080 8.798859 TTTTGAAAAATTCCACAATTCTTGGA 57.201 26.923 1.68 1.68 41.64 3.53
6414 27092 8.646004 TCCACAATTCTTGGAAAATAATGTTCA 58.354 29.630 3.20 0.00 40.35 3.18
6644 27328 0.322546 AAAATCCAGCTGACCGGTCC 60.323 55.000 31.19 17.09 0.00 4.46
6669 27353 7.011389 CCTTTTGAAGGGAACTGATTTCAAAAC 59.989 37.037 15.81 0.00 46.31 2.43
6729 27413 1.406614 CCTCTAGGCAGCCTTGAAGTG 60.407 57.143 22.26 11.85 35.24 3.16
6730 27414 1.277557 CTCTAGGCAGCCTTGAAGTGT 59.722 52.381 22.26 0.00 35.24 3.55
6731 27415 1.699634 TCTAGGCAGCCTTGAAGTGTT 59.300 47.619 22.26 0.00 32.92 3.32
6733 27417 0.538287 AGGCAGCCTTGAAGTGTTCC 60.538 55.000 8.70 0.00 0.00 3.62
6737 27421 1.466167 CAGCCTTGAAGTGTTCCATCG 59.534 52.381 0.00 0.00 0.00 3.84
6747 27431 5.065090 TGAAGTGTTCCATCGCATAAATGAG 59.935 40.000 0.00 0.00 0.00 2.90
6750 27434 3.065233 TGTTCCATCGCATAAATGAGCAC 59.935 43.478 0.00 0.00 0.00 4.40
6751 27435 3.198409 TCCATCGCATAAATGAGCACT 57.802 42.857 0.00 0.00 0.00 4.40
6752 27436 3.133691 TCCATCGCATAAATGAGCACTC 58.866 45.455 0.00 0.00 0.00 3.51
6763 27447 7.201679 GCATAAATGAGCACTCTCTGTTATTGT 60.202 37.037 0.00 0.00 40.03 2.71
6766 27450 4.733850 TGAGCACTCTCTGTTATTGTACG 58.266 43.478 0.00 0.00 40.03 3.67
6784 27468 7.559835 TTGTACGTCATTTTAATGCACAATG 57.440 32.000 0.00 0.00 36.36 2.82
6785 27469 5.570973 TGTACGTCATTTTAATGCACAATGC 59.429 36.000 0.00 0.00 45.29 3.56
6799 27483 5.505173 GCACAATGCATCAAATAGTAGGT 57.495 39.130 0.00 0.00 44.26 3.08
6800 27484 5.514279 GCACAATGCATCAAATAGTAGGTC 58.486 41.667 0.00 0.00 44.26 3.85
6801 27485 5.506317 GCACAATGCATCAAATAGTAGGTCC 60.506 44.000 0.00 0.00 44.26 4.46
6802 27486 5.824624 CACAATGCATCAAATAGTAGGTCCT 59.175 40.000 0.00 0.00 0.00 3.85
6803 27487 6.319658 CACAATGCATCAAATAGTAGGTCCTT 59.680 38.462 0.00 0.00 0.00 3.36
6804 27488 6.891908 ACAATGCATCAAATAGTAGGTCCTTT 59.108 34.615 0.00 0.00 0.00 3.11
6805 27489 7.397192 ACAATGCATCAAATAGTAGGTCCTTTT 59.603 33.333 0.00 0.00 0.00 2.27
6806 27490 7.961326 ATGCATCAAATAGTAGGTCCTTTTT 57.039 32.000 0.00 0.00 0.00 1.94
6807 27491 7.391148 TGCATCAAATAGTAGGTCCTTTTTC 57.609 36.000 0.00 0.00 0.00 2.29
6808 27492 7.175104 TGCATCAAATAGTAGGTCCTTTTTCT 58.825 34.615 0.00 0.00 0.00 2.52
6809 27493 7.336931 TGCATCAAATAGTAGGTCCTTTTTCTC 59.663 37.037 0.00 0.00 0.00 2.87
6810 27494 7.336931 GCATCAAATAGTAGGTCCTTTTTCTCA 59.663 37.037 0.00 0.00 0.00 3.27
6811 27495 9.231297 CATCAAATAGTAGGTCCTTTTTCTCAA 57.769 33.333 0.00 0.00 0.00 3.02
6849 27533 2.176247 AGGTCCTGGTCGTGGATATT 57.824 50.000 0.00 0.00 35.87 1.28
6862 27546 2.228343 GTGGATATTACGACGAGGAGGG 59.772 54.545 0.00 0.00 0.00 4.30
6925 27881 2.225019 CGAGCGTACTGTATTATCCGGT 59.775 50.000 0.00 0.12 0.00 5.28
6936 27892 5.350633 TGTATTATCCGGTCGTTCGATTTT 58.649 37.500 0.00 0.00 0.00 1.82
6993 27950 3.751518 TCCTCTCTGTTGTTTTTAGCCC 58.248 45.455 0.00 0.00 0.00 5.19
7093 28101 4.261572 GCTTTTGAGTATCTTGCACCACAA 60.262 41.667 0.00 0.00 34.92 3.33
7094 28102 5.565439 GCTTTTGAGTATCTTGCACCACAAT 60.565 40.000 0.00 0.00 37.72 2.71
7242 28252 4.178540 CAATGGCATTTTGTCACCATCTC 58.821 43.478 10.65 0.00 42.06 2.75
7272 28283 8.761575 ATGCCACTGTTTCAACTAATAAATTG 57.238 30.769 0.00 0.00 0.00 2.32
7316 28327 3.205338 AGCATTTTGTTTGTTTGCTCCC 58.795 40.909 0.00 0.00 39.32 4.30
7368 28379 5.273170 TGAAAAACTTCACAAGCATCTTCG 58.727 37.500 0.00 0.00 0.00 3.79
7373 28384 5.078411 ACTTCACAAGCATCTTCGAGTAT 57.922 39.130 0.00 0.00 0.00 2.12
7374 28385 5.482908 ACTTCACAAGCATCTTCGAGTATT 58.517 37.500 0.00 0.00 0.00 1.89
7375 28386 5.934625 ACTTCACAAGCATCTTCGAGTATTT 59.065 36.000 0.00 0.00 0.00 1.40
7402 28451 6.844696 TTAGATCTTTGATGTCATTACGGC 57.155 37.500 0.00 0.00 0.00 5.68
7403 28452 4.130118 AGATCTTTGATGTCATTACGGCC 58.870 43.478 0.00 0.00 0.00 6.13
7404 28453 3.342377 TCTTTGATGTCATTACGGCCA 57.658 42.857 2.24 0.00 0.00 5.36
7405 28454 3.680490 TCTTTGATGTCATTACGGCCAA 58.320 40.909 2.24 0.00 0.00 4.52
7406 28455 4.075682 TCTTTGATGTCATTACGGCCAAA 58.924 39.130 2.24 0.00 0.00 3.28
7407 28456 4.704540 TCTTTGATGTCATTACGGCCAAAT 59.295 37.500 2.24 0.00 0.00 2.32
7408 28457 4.630894 TTGATGTCATTACGGCCAAATC 57.369 40.909 2.24 0.00 0.00 2.17
7409 28458 2.948979 TGATGTCATTACGGCCAAATCC 59.051 45.455 2.24 0.00 0.00 3.01
7410 28459 2.498644 TGTCATTACGGCCAAATCCA 57.501 45.000 2.24 0.00 0.00 3.41
7411 28460 2.088423 TGTCATTACGGCCAAATCCAC 58.912 47.619 2.24 1.91 0.00 4.02
7412 28461 2.290641 TGTCATTACGGCCAAATCCACT 60.291 45.455 2.24 0.00 0.00 4.00
7413 28462 2.752903 GTCATTACGGCCAAATCCACTT 59.247 45.455 2.24 0.00 0.00 3.16
7414 28463 3.192633 GTCATTACGGCCAAATCCACTTT 59.807 43.478 2.24 0.00 0.00 2.66
7415 28464 3.829601 TCATTACGGCCAAATCCACTTTT 59.170 39.130 2.24 0.00 0.00 2.27
7416 28465 5.010933 TCATTACGGCCAAATCCACTTTTA 58.989 37.500 2.24 0.00 0.00 1.52
7417 28466 5.654650 TCATTACGGCCAAATCCACTTTTAT 59.345 36.000 2.24 0.00 0.00 1.40
7418 28467 5.986501 TTACGGCCAAATCCACTTTTATT 57.013 34.783 2.24 0.00 0.00 1.40
7419 28468 4.882842 ACGGCCAAATCCACTTTTATTT 57.117 36.364 2.24 0.00 0.00 1.40
7420 28469 5.222079 ACGGCCAAATCCACTTTTATTTT 57.778 34.783 2.24 0.00 0.00 1.82
7421 28470 5.616270 ACGGCCAAATCCACTTTTATTTTT 58.384 33.333 2.24 0.00 0.00 1.94
7422 28471 5.468409 ACGGCCAAATCCACTTTTATTTTTG 59.532 36.000 2.24 0.00 0.00 2.44
7423 28472 5.616645 CGGCCAAATCCACTTTTATTTTTGC 60.617 40.000 2.24 0.00 0.00 3.68
7424 28473 5.381477 GCCAAATCCACTTTTATTTTTGCG 58.619 37.500 0.00 0.00 0.00 4.85
7425 28474 5.616645 GCCAAATCCACTTTTATTTTTGCGG 60.617 40.000 0.00 0.00 0.00 5.69
7426 28475 5.106752 CCAAATCCACTTTTATTTTTGCGGG 60.107 40.000 0.00 0.00 0.00 6.13
7427 28476 3.669251 TCCACTTTTATTTTTGCGGGG 57.331 42.857 0.00 0.00 0.00 5.73
7428 28477 2.300437 TCCACTTTTATTTTTGCGGGGG 59.700 45.455 0.00 0.00 0.00 5.40
7484 28533 3.318275 ACGTTATCATGTCTCACCGCTAT 59.682 43.478 0.00 0.00 0.00 2.97
7487 28536 5.334957 CGTTATCATGTCTCACCGCTATAGT 60.335 44.000 0.84 0.00 0.00 2.12
7490 28539 6.650427 ATCATGTCTCACCGCTATAGTAAA 57.350 37.500 0.84 0.00 0.00 2.01
7492 28541 5.593095 TCATGTCTCACCGCTATAGTAAAGT 59.407 40.000 0.84 0.00 0.00 2.66
7493 28542 6.769341 TCATGTCTCACCGCTATAGTAAAGTA 59.231 38.462 0.84 0.00 0.00 2.24
7494 28543 6.615264 TGTCTCACCGCTATAGTAAAGTAG 57.385 41.667 0.84 0.00 0.00 2.57
7495 28544 5.008415 TGTCTCACCGCTATAGTAAAGTAGC 59.992 44.000 0.84 0.00 39.86 3.58
7496 28545 5.239087 GTCTCACCGCTATAGTAAAGTAGCT 59.761 44.000 0.84 0.00 40.82 3.32
7497 28546 5.826737 TCTCACCGCTATAGTAAAGTAGCTT 59.173 40.000 0.84 0.00 40.82 3.74
7498 28547 6.017275 TCTCACCGCTATAGTAAAGTAGCTTC 60.017 42.308 0.84 0.00 40.82 3.86
7600 28772 1.112916 TCAACAGCGACCTCTCACCA 61.113 55.000 0.00 0.00 0.00 4.17
7621 28793 4.309950 ACCCTTGGCACGACGGTC 62.310 66.667 0.00 0.00 0.00 4.79
7628 28800 4.612412 GCACGACGGTCCACCCAA 62.612 66.667 1.91 0.00 0.00 4.12
7643 28815 0.182537 CCCAACTGGACAACCACTCA 59.817 55.000 0.00 0.00 41.77 3.41
7644 28816 1.597742 CCAACTGGACAACCACTCAG 58.402 55.000 0.00 0.00 41.77 3.35
7645 28817 0.947244 CAACTGGACAACCACTCAGC 59.053 55.000 0.00 0.00 41.77 4.26
7646 28818 0.179018 AACTGGACAACCACTCAGCC 60.179 55.000 0.00 0.00 41.77 4.85
7648 28820 0.976641 CTGGACAACCACTCAGCCTA 59.023 55.000 0.00 0.00 41.77 3.93
7649 28821 1.556911 CTGGACAACCACTCAGCCTAT 59.443 52.381 0.00 0.00 41.77 2.57
7650 28822 2.766263 CTGGACAACCACTCAGCCTATA 59.234 50.000 0.00 0.00 41.77 1.31
7652 28824 4.552674 TGGACAACCACTCAGCCTATATA 58.447 43.478 0.00 0.00 41.77 0.86
7653 28825 4.966168 TGGACAACCACTCAGCCTATATAA 59.034 41.667 0.00 0.00 41.77 0.98
7655 28827 6.069905 TGGACAACCACTCAGCCTATATAAAA 60.070 38.462 0.00 0.00 41.77 1.52
7656 28828 6.826741 GGACAACCACTCAGCCTATATAAAAA 59.173 38.462 0.00 0.00 35.97 1.94
7677 28849 4.808414 AATCAACCTGATCGAGAAGACA 57.192 40.909 0.00 0.00 35.76 3.41
7678 28850 4.808414 ATCAACCTGATCGAGAAGACAA 57.192 40.909 0.00 0.00 29.59 3.18
7679 28851 3.914312 TCAACCTGATCGAGAAGACAAC 58.086 45.455 0.00 0.00 0.00 3.32
7680 28852 3.320826 TCAACCTGATCGAGAAGACAACA 59.679 43.478 0.00 0.00 0.00 3.33
7681 28853 4.058124 CAACCTGATCGAGAAGACAACAA 58.942 43.478 0.00 0.00 0.00 2.83
7682 28854 4.336889 ACCTGATCGAGAAGACAACAAA 57.663 40.909 0.00 0.00 0.00 2.83
7683 28855 4.310769 ACCTGATCGAGAAGACAACAAAG 58.689 43.478 0.00 0.00 0.00 2.77
7684 28856 4.039245 ACCTGATCGAGAAGACAACAAAGA 59.961 41.667 0.00 0.00 0.00 2.52
7685 28857 4.991056 CCTGATCGAGAAGACAACAAAGAA 59.009 41.667 0.00 0.00 0.00 2.52
7686 28858 5.466728 CCTGATCGAGAAGACAACAAAGAAA 59.533 40.000 0.00 0.00 0.00 2.52
7687 28859 6.017934 CCTGATCGAGAAGACAACAAAGAAAA 60.018 38.462 0.00 0.00 0.00 2.29
7688 28860 6.948353 TGATCGAGAAGACAACAAAGAAAAG 58.052 36.000 0.00 0.00 0.00 2.27
7690 28862 6.106877 TCGAGAAGACAACAAAGAAAAGTG 57.893 37.500 0.00 0.00 0.00 3.16
7691 28863 5.064707 TCGAGAAGACAACAAAGAAAAGTGG 59.935 40.000 0.00 0.00 0.00 4.00
7692 28864 5.064707 CGAGAAGACAACAAAGAAAAGTGGA 59.935 40.000 0.00 0.00 0.00 4.02
7693 28865 6.403200 CGAGAAGACAACAAAGAAAAGTGGAA 60.403 38.462 0.00 0.00 0.00 3.53
7694 28866 6.856895 AGAAGACAACAAAGAAAAGTGGAAG 58.143 36.000 0.00 0.00 0.00 3.46
7697 28869 6.856895 AGACAACAAAGAAAAGTGGAAGAAG 58.143 36.000 0.00 0.00 0.00 2.85
7699 28871 7.176690 AGACAACAAAGAAAAGTGGAAGAAGAA 59.823 33.333 0.00 0.00 0.00 2.52
7700 28872 7.315890 ACAACAAAGAAAAGTGGAAGAAGAAG 58.684 34.615 0.00 0.00 0.00 2.85
7702 28874 7.703058 ACAAAGAAAAGTGGAAGAAGAAGAA 57.297 32.000 0.00 0.00 0.00 2.52
7703 28875 7.766283 ACAAAGAAAAGTGGAAGAAGAAGAAG 58.234 34.615 0.00 0.00 0.00 2.85
7704 28876 6.384258 AAGAAAAGTGGAAGAAGAAGAAGC 57.616 37.500 0.00 0.00 0.00 3.86
7707 28879 4.696479 AAGTGGAAGAAGAAGAAGCTCA 57.304 40.909 0.00 0.00 0.00 4.26
7708 28880 4.696479 AGTGGAAGAAGAAGAAGCTCAA 57.304 40.909 0.00 0.00 0.00 3.02
7710 28882 3.188254 GTGGAAGAAGAAGAAGCTCAAGC 59.812 47.826 0.00 0.00 42.49 4.01
7723 30014 3.238108 GCTCAAGCTAGCTAGACAACA 57.762 47.619 25.15 2.57 39.50 3.33
7731 30022 3.736740 GCTAGCTAGACAACAGGAAGAGC 60.737 52.174 25.15 1.96 0.00 4.09
8075 30389 2.359169 CGTCTAGGGAGCCTGCCAA 61.359 63.158 4.63 0.00 34.61 4.52
8101 30417 7.095187 ACGTGTGATTTCCTCTATTCTTTTCAC 60.095 37.037 0.00 0.00 33.37 3.18
8104 30420 8.786898 TGTGATTTCCTCTATTCTTTTCACTTG 58.213 33.333 0.00 0.00 33.79 3.16
8500 31110 1.852942 TCTTGTGCTCAGTCAACGTC 58.147 50.000 0.00 0.00 0.00 4.34
8513 31123 0.948623 CAACGTCGAAGGATGCCACA 60.949 55.000 0.00 0.00 32.12 4.17
8514 31124 0.036388 AACGTCGAAGGATGCCACAT 60.036 50.000 0.00 0.00 32.12 3.21
8515 31125 0.740868 ACGTCGAAGGATGCCACATG 60.741 55.000 0.00 0.00 32.12 3.21
8516 31126 1.723870 GTCGAAGGATGCCACATGC 59.276 57.895 0.00 0.00 41.77 4.06
8582 31563 4.728350 TGGACACCCCTACTATAGTACTCA 59.272 45.833 8.59 0.00 35.38 3.41
8591 31572 6.602406 CCCTACTATAGTACTCATACCGCATT 59.398 42.308 8.59 0.00 30.88 3.56
8592 31573 7.201714 CCCTACTATAGTACTCATACCGCATTC 60.202 44.444 8.59 0.00 30.88 2.67
8604 31585 4.955238 GCATTCGCGCTTACTGTC 57.045 55.556 5.56 0.00 0.00 3.51
8652 31633 2.313051 TTTGTTCCTCCGGTGCGACA 62.313 55.000 0.00 3.67 0.00 4.35
8653 31634 2.432628 GTTCCTCCGGTGCGACAG 60.433 66.667 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.306199 CCCTATGTGTTGGATGAAATATCCA 58.694 40.000 4.58 4.58 45.71 3.41
12 13 4.133820 CGCCCTATGTGTTGGATGAAATA 58.866 43.478 0.00 0.00 0.00 1.40
15 16 2.016604 GCGCCCTATGTGTTGGATGAA 61.017 52.381 0.00 0.00 0.00 2.57
16 17 0.463654 GCGCCCTATGTGTTGGATGA 60.464 55.000 0.00 0.00 0.00 2.92
17 18 1.775039 CGCGCCCTATGTGTTGGATG 61.775 60.000 0.00 0.00 0.00 3.51
26 27 0.885879 TATACACCTCGCGCCCTATG 59.114 55.000 0.00 0.00 0.00 2.23
29 30 1.533469 GGATATACACCTCGCGCCCT 61.533 60.000 0.00 0.00 0.00 5.19
31 32 1.443872 CGGATATACACCTCGCGCC 60.444 63.158 0.00 0.00 0.00 6.53
32 33 1.443872 CCGGATATACACCTCGCGC 60.444 63.158 0.00 0.00 0.00 6.86
33 34 1.211969 CCCGGATATACACCTCGCG 59.788 63.158 0.73 0.00 0.00 5.87
35 36 0.251474 TCCCCCGGATATACACCTCG 60.251 60.000 0.73 0.00 0.00 4.63
38 39 1.346722 CAACTCCCCCGGATATACACC 59.653 57.143 0.73 0.00 0.00 4.16
39 40 1.346722 CCAACTCCCCCGGATATACAC 59.653 57.143 0.73 0.00 0.00 2.90
40 41 1.221007 TCCAACTCCCCCGGATATACA 59.779 52.381 0.73 0.00 0.00 2.29
42 43 1.221007 TGTCCAACTCCCCCGGATATA 59.779 52.381 0.73 0.00 0.00 0.86
44 45 0.030501 ATGTCCAACTCCCCCGGATA 60.031 55.000 0.73 0.00 0.00 2.59
45 46 0.030501 TATGTCCAACTCCCCCGGAT 60.031 55.000 0.73 0.00 0.00 4.18
46 47 0.979187 GTATGTCCAACTCCCCCGGA 60.979 60.000 0.73 0.00 0.00 5.14
47 48 1.525442 GTATGTCCAACTCCCCCGG 59.475 63.158 0.00 0.00 0.00 5.73
50 51 1.525442 CCGGTATGTCCAACTCCCC 59.475 63.158 0.00 0.00 35.57 4.81
52 53 1.153229 GCCCGGTATGTCCAACTCC 60.153 63.158 0.00 0.00 35.57 3.85
53 54 0.462047 CAGCCCGGTATGTCCAACTC 60.462 60.000 0.00 0.00 35.57 3.01
54 55 1.602237 CAGCCCGGTATGTCCAACT 59.398 57.895 0.00 0.00 35.57 3.16
141 142 4.768583 AGTTTTGCCATCATTGTTGTTGT 58.231 34.783 0.00 0.00 0.00 3.32
153 154 0.610785 CCCCACGGTAGTTTTGCCAT 60.611 55.000 0.00 0.00 0.00 4.40
154 155 1.228306 CCCCACGGTAGTTTTGCCA 60.228 57.895 0.00 0.00 0.00 4.92
193 194 0.476771 TTCACTTGAAGACCACCCCC 59.523 55.000 0.00 0.00 0.00 5.40
198 199 3.243035 CGCACAAATTCACTTGAAGACCA 60.243 43.478 0.00 0.00 37.48 4.02
219 220 1.810030 GACTAACCGCAAGAGGCCG 60.810 63.158 0.00 0.00 40.31 6.13
233 6754 1.171308 GCGTCGGCCATATAGGACTA 58.829 55.000 2.24 0.00 46.64 2.59
255 6776 1.248785 GCGGATATAGGGACGGCTGA 61.249 60.000 0.00 0.00 0.00 4.26
257 6778 1.982938 GGCGGATATAGGGACGGCT 60.983 63.158 0.00 0.00 46.50 5.52
259 6780 2.356780 GGGGCGGATATAGGGACGG 61.357 68.421 0.00 0.00 0.00 4.79
290 6811 2.224305 GCTAACCGGCAGTCCTCATATT 60.224 50.000 0.00 0.00 0.00 1.28
291 6812 1.344763 GCTAACCGGCAGTCCTCATAT 59.655 52.381 0.00 0.00 0.00 1.78
325 6846 4.393834 TCAATCGGACCAGACAAATTCAA 58.606 39.130 0.00 0.00 0.00 2.69
347 6868 3.181440 TGCCTGAACAGAAAAGATCCACT 60.181 43.478 3.19 0.00 0.00 4.00
372 6897 1.879380 CCGCCTCAAATGTTCAGACAA 59.121 47.619 0.00 0.00 39.66 3.18
418 6943 0.466007 TGCGATGCATGGCTGGTTAT 60.466 50.000 30.06 0.00 31.71 1.89
431 6956 0.807275 TTGACGAGAGCCATGCGATG 60.807 55.000 0.00 0.00 0.00 3.84
435 6960 1.202222 CCAAATTGACGAGAGCCATGC 60.202 52.381 0.00 0.00 0.00 4.06
436 6961 2.358957 TCCAAATTGACGAGAGCCATG 58.641 47.619 0.00 0.00 0.00 3.66
437 6962 2.787473 TCCAAATTGACGAGAGCCAT 57.213 45.000 0.00 0.00 0.00 4.40
449 6974 5.854010 TGACGAGCTACTAGATCCAAATT 57.146 39.130 0.00 0.00 0.00 1.82
546 7072 1.203994 GCATCAAGGAGCATTGCAAGT 59.796 47.619 11.91 0.00 33.58 3.16
547 7073 1.470979 GGCATCAAGGAGCATTGCAAG 60.471 52.381 11.91 0.00 35.04 4.01
548 7074 0.533491 GGCATCAAGGAGCATTGCAA 59.467 50.000 11.91 0.00 35.04 4.08
551 7077 0.744874 CCAGGCATCAAGGAGCATTG 59.255 55.000 0.00 0.00 0.00 2.82
552 7078 1.041447 GCCAGGCATCAAGGAGCATT 61.041 55.000 6.55 0.00 0.00 3.56
553 7079 1.455217 GCCAGGCATCAAGGAGCAT 60.455 57.895 6.55 0.00 0.00 3.79
596 7131 1.975660 TTTGTACGGCTCCTGCTTTT 58.024 45.000 0.00 0.00 39.59 2.27
631 7168 7.545362 GCTAGAGTGAGCAAGAAATTAATCA 57.455 36.000 0.00 0.00 42.36 2.57
713 7287 5.514274 TTTATAATTTGTGGCCTAGCAGC 57.486 39.130 3.32 0.00 0.00 5.25
775 7354 7.605449 CAGAATCCAAACATAAATTCCACACT 58.395 34.615 0.00 0.00 0.00 3.55
825 7416 0.596600 ACGATGCGTACGCCCTAATG 60.597 55.000 35.11 20.85 38.73 1.90
831 7443 2.023181 TACGACGATGCGTACGCC 59.977 61.111 35.11 20.74 43.61 5.68
850 7465 9.587772 GCGTCCATATATATAATCAACTGAGTT 57.412 33.333 0.00 0.00 0.00 3.01
851 7466 7.915923 CGCGTCCATATATATAATCAACTGAGT 59.084 37.037 0.00 0.00 0.00 3.41
852 7467 7.915923 ACGCGTCCATATATATAATCAACTGAG 59.084 37.037 5.58 0.00 0.00 3.35
895 7510 4.034510 GCTGCATCGTAGTTTTATTGCTCT 59.965 41.667 0.00 0.00 0.00 4.09
899 7514 4.263800 GTCGCTGCATCGTAGTTTTATTG 58.736 43.478 10.07 0.00 0.00 1.90
902 7517 1.915350 CGTCGCTGCATCGTAGTTTTA 59.085 47.619 10.07 0.00 0.00 1.52
904 7519 0.109458 TCGTCGCTGCATCGTAGTTT 60.109 50.000 10.07 0.00 0.00 2.66
906 7521 1.226323 GTCGTCGCTGCATCGTAGT 60.226 57.895 10.07 0.00 0.00 2.73
931 12192 2.223135 GCGGTAATTCTTCTTGAGCTGC 60.223 50.000 0.00 0.00 0.00 5.25
958 12223 2.050077 GCTGGCGTTCTTGTTGGC 60.050 61.111 0.00 0.00 0.00 4.52
959 12224 2.192861 TGGCTGGCGTTCTTGTTGG 61.193 57.895 0.00 0.00 0.00 3.77
1049 12324 1.381872 CGGAGTGGGGAGGAGATGT 60.382 63.158 0.00 0.00 0.00 3.06
1054 12329 1.684734 GCTTACGGAGTGGGGAGGA 60.685 63.158 0.00 0.00 45.73 3.71
1187 16012 2.612251 CCCCTCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
1188 16013 3.039526 CCCCCTCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
1189 16014 3.036959 TCCCCCTCCTCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
1771 16617 7.438160 TGTGATGACTAATATAAGCGGTTGAAG 59.562 37.037 10.73 2.76 0.00 3.02
1774 16620 7.658179 ATGTGATGACTAATATAAGCGGTTG 57.342 36.000 10.73 0.00 0.00 3.77
1803 16660 5.316987 CCTCTGACCAAGGATTAAGTTGTT 58.683 41.667 0.00 0.00 35.83 2.83
1814 16671 1.059913 AGTCAACCCTCTGACCAAGG 58.940 55.000 0.24 0.00 45.77 3.61
1917 17145 7.380602 CCAAATCAAAGAAACTCTTACTTGCAG 59.619 37.037 0.00 0.00 35.27 4.41
1956 17199 3.324846 CCACAGGTAGCTAGCCATGAATA 59.675 47.826 19.06 0.00 0.00 1.75
1957 17200 2.105477 CCACAGGTAGCTAGCCATGAAT 59.895 50.000 19.06 0.00 0.00 2.57
1958 17201 1.486310 CCACAGGTAGCTAGCCATGAA 59.514 52.381 19.06 0.00 0.00 2.57
1959 17202 1.123077 CCACAGGTAGCTAGCCATGA 58.877 55.000 19.06 0.00 0.00 3.07
1977 17227 5.109210 TGACGTGTCATTAACTCATGATCC 58.891 41.667 0.00 0.00 35.60 3.36
1978 17228 6.647212 TTGACGTGTCATTAACTCATGATC 57.353 37.500 3.14 0.00 39.64 2.92
1979 17229 7.433708 TTTTGACGTGTCATTAACTCATGAT 57.566 32.000 3.14 0.00 39.64 2.45
1980 17230 6.852858 TTTTGACGTGTCATTAACTCATGA 57.147 33.333 3.14 0.00 39.64 3.07
1982 17232 8.779303 TGTAATTTTGACGTGTCATTAACTCAT 58.221 29.630 3.14 0.00 39.64 2.90
1983 17233 8.144155 TGTAATTTTGACGTGTCATTAACTCA 57.856 30.769 3.14 0.00 39.64 3.41
1984 17234 9.262472 GATGTAATTTTGACGTGTCATTAACTC 57.738 33.333 3.14 0.00 39.64 3.01
1985 17235 8.779303 TGATGTAATTTTGACGTGTCATTAACT 58.221 29.630 3.14 0.00 39.64 2.24
1987 17237 9.553418 CATGATGTAATTTTGACGTGTCATTAA 57.447 29.630 3.14 2.47 39.64 1.40
1988 17238 8.940952 TCATGATGTAATTTTGACGTGTCATTA 58.059 29.630 3.14 0.00 39.64 1.90
1989 17239 7.815641 TCATGATGTAATTTTGACGTGTCATT 58.184 30.769 3.14 0.00 39.64 2.57
2053 17430 8.980481 AAAATCCCATCGAAGTACTATTGAAT 57.020 30.769 0.00 0.00 0.00 2.57
2054 17431 8.673711 CAAAAATCCCATCGAAGTACTATTGAA 58.326 33.333 0.00 0.00 0.00 2.69
2055 17432 7.827236 ACAAAAATCCCATCGAAGTACTATTGA 59.173 33.333 0.00 0.00 0.00 2.57
2056 17433 7.985476 ACAAAAATCCCATCGAAGTACTATTG 58.015 34.615 0.00 0.00 0.00 1.90
2057 17434 8.458843 CAACAAAAATCCCATCGAAGTACTATT 58.541 33.333 0.00 0.00 0.00 1.73
2058 17435 7.067008 CCAACAAAAATCCCATCGAAGTACTAT 59.933 37.037 0.00 0.00 0.00 2.12
2059 17436 6.373216 CCAACAAAAATCCCATCGAAGTACTA 59.627 38.462 0.00 0.00 0.00 1.82
2069 17446 3.183801 AGCCATCCAACAAAAATCCCAT 58.816 40.909 0.00 0.00 0.00 4.00
2089 17466 0.876342 GGCTATCTGAACCGCGGAAG 60.876 60.000 35.90 24.71 35.03 3.46
2090 17467 1.143183 GGCTATCTGAACCGCGGAA 59.857 57.895 35.90 16.06 35.03 4.30
2093 17470 2.658593 CGGGCTATCTGAACCGCG 60.659 66.667 0.00 0.00 39.85 6.46
2094 17471 2.280186 CCGGGCTATCTGAACCGC 60.280 66.667 0.00 0.00 44.70 5.68
2097 17474 1.067582 CGGACCGGGCTATCTGAAC 59.932 63.158 7.57 0.00 0.00 3.18
2098 17475 0.685131 TTCGGACCGGGCTATCTGAA 60.685 55.000 15.25 8.74 37.78 3.02
2102 17479 1.067582 CTGTTCGGACCGGGCTATC 59.932 63.158 15.25 0.00 0.00 2.08
2103 17480 1.262640 AACTGTTCGGACCGGGCTAT 61.263 55.000 15.25 0.00 0.00 2.97
2104 17481 1.909781 AACTGTTCGGACCGGGCTA 60.910 57.895 15.25 0.00 0.00 3.93
2107 17484 0.033781 TTACAACTGTTCGGACCGGG 59.966 55.000 15.25 4.89 0.00 5.73
2108 17485 1.425412 CTTACAACTGTTCGGACCGG 58.575 55.000 15.25 0.00 0.00 5.28
2113 17490 3.184986 CGGTAAACCTTACAACTGTTCGG 59.815 47.826 0.00 0.00 0.00 4.30
2115 17492 4.129380 ACCGGTAAACCTTACAACTGTTC 58.871 43.478 4.49 0.00 0.00 3.18
2118 17495 3.069289 GGACCGGTAAACCTTACAACTG 58.931 50.000 7.34 0.00 0.00 3.16
2119 17496 2.289010 CGGACCGGTAAACCTTACAACT 60.289 50.000 7.34 0.00 0.00 3.16
2120 17497 2.068519 CGGACCGGTAAACCTTACAAC 58.931 52.381 7.34 0.00 0.00 3.32
2123 17500 2.455674 AACGGACCGGTAAACCTTAC 57.544 50.000 20.00 0.00 0.00 2.34
2124 17501 3.137533 CAAAACGGACCGGTAAACCTTA 58.862 45.455 20.00 0.00 0.00 2.69
2129 17506 4.097589 ACATTTTCAAAACGGACCGGTAAA 59.902 37.500 20.00 9.51 0.00 2.01
2132 17509 2.025898 ACATTTTCAAAACGGACCGGT 58.974 42.857 20.00 6.92 0.00 5.28
2133 17510 2.292292 AGACATTTTCAAAACGGACCGG 59.708 45.455 20.00 0.00 0.00 5.28
2135 17512 5.688621 GGTAAAGACATTTTCAAAACGGACC 59.311 40.000 0.00 0.00 0.00 4.46
2138 17515 5.593010 TGGGTAAAGACATTTTCAAAACGG 58.407 37.500 0.00 0.00 0.00 4.44
2139 17516 6.346518 GCATGGGTAAAGACATTTTCAAAACG 60.347 38.462 0.00 0.00 0.00 3.60
2164 17541 3.081133 CGTGAGGGATGCGAAACG 58.919 61.111 0.00 0.00 0.00 3.60
2167 17544 2.434185 GTGCGTGAGGGATGCGAA 60.434 61.111 0.00 0.00 39.76 4.70
2168 17545 4.794439 CGTGCGTGAGGGATGCGA 62.794 66.667 0.00 0.00 39.76 5.10
2171 17548 2.741985 TTGCGTGCGTGAGGGATG 60.742 61.111 0.00 0.00 0.00 3.51
2174 17551 4.012895 GTGTTGCGTGCGTGAGGG 62.013 66.667 0.00 0.00 0.00 4.30
2175 17552 2.606961 ATGTGTTGCGTGCGTGAGG 61.607 57.895 0.00 0.00 0.00 3.86
2180 17557 1.638388 ATCCTCATGTGTTGCGTGCG 61.638 55.000 0.00 0.00 34.19 5.34
2182 17559 2.995466 AAATCCTCATGTGTTGCGTG 57.005 45.000 0.00 0.00 35.47 5.34
2184 17561 2.415893 GGGAAAATCCTCATGTGTTGCG 60.416 50.000 0.00 0.00 36.57 4.85
2185 17562 2.415893 CGGGAAAATCCTCATGTGTTGC 60.416 50.000 0.00 0.00 36.57 4.17
2231 18828 1.608717 GCACTCGTGAGGGAGGTGAT 61.609 60.000 2.65 0.00 38.39 3.06
2261 18858 0.107214 TCTGACATGGCGGGGAAATC 60.107 55.000 7.76 0.00 0.00 2.17
2266 18863 4.838152 CGGTCTGACATGGCGGGG 62.838 72.222 7.76 0.00 0.00 5.73
2270 18867 2.512515 GAGGCGGTCTGACATGGC 60.513 66.667 10.38 13.10 0.00 4.40
2272 18869 1.517257 GACGAGGCGGTCTGACATG 60.517 63.158 10.38 2.56 34.09 3.21
2273 18870 2.885861 GACGAGGCGGTCTGACAT 59.114 61.111 10.38 0.00 34.09 3.06
2274 18871 3.733960 CGACGAGGCGGTCTGACA 61.734 66.667 10.38 0.00 34.75 3.58
2275 18872 4.477975 CCGACGAGGCGGTCTGAC 62.478 72.222 9.61 0.00 46.07 3.51
2292 21479 0.043310 GTTCGGATTGACGTATGCGC 60.043 55.000 0.00 0.00 42.83 6.09
2296 21483 8.120465 GTCAAAATTATGTTCGGATTGACGTAT 58.880 33.333 0.00 0.00 36.82 3.06
2300 21487 7.305474 ACAGTCAAAATTATGTTCGGATTGAC 58.695 34.615 7.46 7.46 43.23 3.18
2302 21489 9.787532 AATACAGTCAAAATTATGTTCGGATTG 57.212 29.630 0.00 0.00 0.00 2.67
2305 21592 7.753132 GCAAATACAGTCAAAATTATGTTCGGA 59.247 33.333 0.00 0.00 0.00 4.55
2307 21594 8.673626 AGCAAATACAGTCAAAATTATGTTCG 57.326 30.769 0.00 0.00 0.00 3.95
2311 21598 7.775120 AGGGAGCAAATACAGTCAAAATTATG 58.225 34.615 0.00 0.00 0.00 1.90
2313 21600 6.945435 TGAGGGAGCAAATACAGTCAAAATTA 59.055 34.615 0.00 0.00 0.00 1.40
2322 21609 4.201851 CGTGATTTGAGGGAGCAAATACAG 60.202 45.833 0.00 0.00 45.63 2.74
2341 21629 0.249155 GAACGACACCTCCAACGTGA 60.249 55.000 0.00 0.00 38.92 4.35
2391 21843 9.566432 TTTTCATACAACATGCCCTAAATTTTT 57.434 25.926 0.00 0.00 0.00 1.94
2393 21845 9.737844 AATTTTCATACAACATGCCCTAAATTT 57.262 25.926 0.00 0.00 0.00 1.82
2398 21850 6.194235 AGGAATTTTCATACAACATGCCCTA 58.806 36.000 0.00 0.00 0.00 3.53
2399 21851 5.025453 AGGAATTTTCATACAACATGCCCT 58.975 37.500 0.00 0.00 0.00 5.19
2402 21854 5.516339 CGGAAGGAATTTTCATACAACATGC 59.484 40.000 0.00 0.00 0.00 4.06
2403 21855 6.527722 CACGGAAGGAATTTTCATACAACATG 59.472 38.462 0.00 0.00 0.00 3.21
2404 21856 6.208599 ACACGGAAGGAATTTTCATACAACAT 59.791 34.615 0.00 0.00 0.00 2.71
2405 21857 5.533154 ACACGGAAGGAATTTTCATACAACA 59.467 36.000 0.00 0.00 0.00 3.33
2406 21858 5.856455 CACACGGAAGGAATTTTCATACAAC 59.144 40.000 0.00 0.00 0.00 3.32
2444 21898 7.820386 TCTTAAGAGTAAATTACATTGGCGACA 59.180 33.333 0.00 0.00 39.83 4.35
2445 21899 8.193250 TCTTAAGAGTAAATTACATTGGCGAC 57.807 34.615 0.00 0.00 0.00 5.19
2446 21900 8.780846 TTCTTAAGAGTAAATTACATTGGCGA 57.219 30.769 5.12 0.00 0.00 5.54
2497 21951 9.753674 TCTAAAGGAGAATTGTACATTTCCATT 57.246 29.630 21.22 15.25 0.00 3.16
2571 22518 2.280592 AAGCCGCCTTTTCGACGT 60.281 55.556 0.00 0.00 0.00 4.34
2574 22521 2.314647 CGTGAAGCCGCCTTTTCGA 61.315 57.895 0.00 0.00 32.98 3.71
2717 22664 3.767806 CTGAGCCGAGCTGCTGGA 61.768 66.667 13.55 0.00 42.95 3.86
2823 22770 4.287580 CCGACATTTACGGTGGCA 57.712 55.556 0.00 0.00 44.57 4.92
2840 22787 2.110734 GATGATGAAGAAGCCCGCGC 62.111 60.000 0.00 0.00 0.00 6.86
2844 22791 5.068636 ACATACATGATGATGAAGAAGCCC 58.931 41.667 0.00 0.00 39.06 5.19
3081 23028 0.992072 CATGAACGATCGTCGCAGTT 59.008 50.000 22.98 4.04 45.12 3.16
3174 23155 1.069978 TCGCTGGACACAAGAATCACA 59.930 47.619 0.00 0.00 0.00 3.58
3235 23221 7.663081 CCTCATTAGCTTTGTATGTATGTCCAT 59.337 37.037 0.00 0.00 0.00 3.41
3271 23257 0.697854 AACCACCACTCAGGGACCTT 60.698 55.000 0.00 0.00 43.89 3.50
3325 23311 8.887036 TCGATGTAATACTCACAAGCAAATAT 57.113 30.769 0.00 0.00 0.00 1.28
3342 23328 0.179100 GCTGGAGCTGCTCGATGTAA 60.179 55.000 22.25 4.03 38.21 2.41
3392 23378 3.573967 GAGGGTGAAGAAAAAGGCAATGA 59.426 43.478 0.00 0.00 0.00 2.57
3458 23448 4.393990 TGCTCTAGATCATGCAAGTTGTTG 59.606 41.667 4.48 3.36 36.67 3.33
3487 23499 2.554032 GTGGAAGAATGTGAGTTGTGGG 59.446 50.000 0.00 0.00 0.00 4.61
3529 23549 6.858478 CGATGATATACTCTGTGACGATGTTT 59.142 38.462 0.00 0.00 0.00 2.83
3622 23642 4.338964 TCTTGCAGAAACATCAAAGCTTGA 59.661 37.500 0.00 0.00 45.01 3.02
3629 23649 9.033481 CAACTTAAAATCTTGCAGAAACATCAA 57.967 29.630 0.00 0.00 0.00 2.57
3744 23831 1.896694 CTCTGGACTCTGGTGGAGC 59.103 63.158 0.00 0.00 45.48 4.70
3755 23842 2.462456 TGATCTTGTGTGCTCTGGAC 57.538 50.000 0.00 0.00 0.00 4.02
3756 23843 2.303890 ACATGATCTTGTGTGCTCTGGA 59.696 45.455 13.08 0.00 0.00 3.86
3757 23844 2.708051 ACATGATCTTGTGTGCTCTGG 58.292 47.619 13.08 0.00 0.00 3.86
3758 23845 3.501062 ACAACATGATCTTGTGTGCTCTG 59.499 43.478 14.42 10.26 30.46 3.35
3759 23846 3.748083 ACAACATGATCTTGTGTGCTCT 58.252 40.909 14.42 0.00 30.46 4.09
3760 23847 5.808042 ATACAACATGATCTTGTGTGCTC 57.192 39.130 14.42 0.00 33.79 4.26
3761 23848 5.474532 ACAATACAACATGATCTTGTGTGCT 59.525 36.000 14.42 0.00 33.79 4.40
3822 23961 0.527113 CCGCAATTGATGTTCCTGCA 59.473 50.000 10.34 0.00 33.19 4.41
3824 23963 0.527113 TGCCGCAATTGATGTTCCTG 59.473 50.000 10.34 0.00 0.00 3.86
3906 24045 0.390472 GGTTGTCCGCTGAGAGAAGG 60.390 60.000 0.00 0.00 0.00 3.46
3927 24066 0.465097 GATCAGTGGGGCATGTCCAG 60.465 60.000 20.13 4.80 34.56 3.86
3987 24126 1.101049 CCCCAAATATTCTGCGCGGT 61.101 55.000 17.37 0.00 0.00 5.68
4506 25085 5.871524 TCTCATCTTTGAAAGGATCGAACAG 59.128 40.000 4.94 0.00 0.00 3.16
4569 25155 2.627221 GGAGGTTACTATCGAGGTTCCC 59.373 54.545 0.00 0.00 0.00 3.97
4606 25196 1.818060 TGCAGCAAAACCTATTCGCAT 59.182 42.857 0.00 0.00 0.00 4.73
4626 25217 6.068670 ACAGGCCAGAACAATAGTTAACTTT 58.931 36.000 14.49 2.61 38.30 2.66
4647 25238 9.388506 AGAATCAAGGAATCAGTACATTTACAG 57.611 33.333 0.00 0.00 0.00 2.74
4779 25376 4.082787 AGTGCAAAAATCAATGTAGTCCCG 60.083 41.667 0.00 0.00 0.00 5.14
4839 25438 1.512926 GACGCATGAGTGGTGAAGTT 58.487 50.000 6.88 0.00 0.00 2.66
4927 25527 2.436292 AGTCGTCGACCTCTCCCG 60.436 66.667 21.40 0.00 32.18 5.14
4948 25548 3.181468 CCCCTCCAACCTAGTTCGATTAC 60.181 52.174 0.00 0.00 0.00 1.89
5113 25718 0.246635 ATCTCGTGGGTGAAGGAACG 59.753 55.000 0.00 0.00 37.38 3.95
5380 26037 8.894409 TCATTGCGTATTTTGAAAAGTCATAG 57.106 30.769 0.00 0.00 32.48 2.23
5491 26152 8.500753 AGTGTTCATCAAGTGTACTAAAACAA 57.499 30.769 0.00 0.00 0.00 2.83
5493 26154 9.783256 AAAAGTGTTCATCAAGTGTACTAAAAC 57.217 29.630 0.00 0.00 0.00 2.43
5501 26162 9.651913 ACATTTTAAAAAGTGTTCATCAAGTGT 57.348 25.926 7.95 0.00 35.66 3.55
5502 26163 9.904647 CACATTTTAAAAAGTGTTCATCAAGTG 57.095 29.630 22.18 7.30 36.83 3.16
5525 26186 7.816513 TGAACAATTTTCAAATGAGTGAACACA 59.183 29.630 7.68 0.00 37.24 3.72
5601 26263 1.795286 CAAGCGCGGCCATTTTTAAAA 59.205 42.857 8.83 0.00 0.00 1.52
5602 26264 1.269831 ACAAGCGCGGCCATTTTTAAA 60.270 42.857 8.83 0.00 0.00 1.52
5603 26265 0.315568 ACAAGCGCGGCCATTTTTAA 59.684 45.000 8.83 0.00 0.00 1.52
5604 26266 0.315568 AACAAGCGCGGCCATTTTTA 59.684 45.000 8.83 0.00 0.00 1.52
5606 26268 1.664333 CAACAAGCGCGGCCATTTT 60.664 52.632 8.83 0.00 0.00 1.82
5613 26275 0.248866 AACCTTTTCAACAAGCGCGG 60.249 50.000 8.83 0.00 0.00 6.46
5742 26405 2.614057 CCTTGACCTTGCGAATACATCC 59.386 50.000 0.00 0.00 0.00 3.51
5751 26414 0.535102 AACCTGTCCTTGACCTTGCG 60.535 55.000 0.00 0.00 0.00 4.85
5754 26417 3.884037 ATGAAACCTGTCCTTGACCTT 57.116 42.857 0.00 0.00 0.00 3.50
5759 26422 7.504924 TTTTAGTGTATGAAACCTGTCCTTG 57.495 36.000 0.00 0.00 0.00 3.61
5787 26450 5.395642 GTTGTTGTTCCTTTTTCGTTCTCA 58.604 37.500 0.00 0.00 0.00 3.27
5790 26453 4.740268 AGGTTGTTGTTCCTTTTTCGTTC 58.260 39.130 0.00 0.00 0.00 3.95
5794 26457 7.892778 TTTGTTAGGTTGTTGTTCCTTTTTC 57.107 32.000 0.00 0.00 35.51 2.29
5804 26469 8.485976 TTTTCTTTCCATTTGTTAGGTTGTTG 57.514 30.769 0.00 0.00 0.00 3.33
5813 26478 7.226523 GTGTAGCCAATTTTCTTTCCATTTGTT 59.773 33.333 0.00 0.00 0.00 2.83
5815 26480 6.930722 AGTGTAGCCAATTTTCTTTCCATTTG 59.069 34.615 0.00 0.00 0.00 2.32
5822 26487 5.068591 ACCGAAAGTGTAGCCAATTTTCTTT 59.931 36.000 0.00 0.00 38.84 2.52
5825 26490 4.023536 TGACCGAAAGTGTAGCCAATTTTC 60.024 41.667 0.00 0.00 38.84 2.29
5830 26495 1.870580 CGTGACCGAAAGTGTAGCCAA 60.871 52.381 0.00 0.00 35.63 4.52
5831 26496 0.319211 CGTGACCGAAAGTGTAGCCA 60.319 55.000 0.00 0.00 35.63 4.75
5832 26497 0.319297 ACGTGACCGAAAGTGTAGCC 60.319 55.000 0.00 0.00 37.88 3.93
5833 26498 0.782384 CACGTGACCGAAAGTGTAGC 59.218 55.000 10.90 0.00 37.88 3.58
5834 26499 1.784856 CACACGTGACCGAAAGTGTAG 59.215 52.381 25.01 0.00 44.83 2.74
5837 26502 0.852777 CTCACACGTGACCGAAAGTG 59.147 55.000 25.01 7.41 40.17 3.16
5889 26562 6.810911 TCTCACATTGCCTCTTACTAGATTC 58.189 40.000 0.00 0.00 0.00 2.52
5929 26603 4.326205 CATCATCTTTTGCACGTAACTCG 58.674 43.478 0.00 0.00 46.00 4.18
5939 26613 0.248784 GCGCTCCCATCATCTTTTGC 60.249 55.000 0.00 0.00 0.00 3.68
5940 26614 1.386533 AGCGCTCCCATCATCTTTTG 58.613 50.000 2.64 0.00 0.00 2.44
5945 26619 1.202580 ACAAGTAGCGCTCCCATCATC 60.203 52.381 16.34 0.00 0.00 2.92
5992 26666 2.932614 CTCGCTTCCAATGAGTTACAGG 59.067 50.000 0.00 0.00 0.00 4.00
5993 26667 3.849911 TCTCGCTTCCAATGAGTTACAG 58.150 45.455 0.00 0.00 0.00 2.74
5994 26668 3.953712 TCTCGCTTCCAATGAGTTACA 57.046 42.857 0.00 0.00 0.00 2.41
5995 26669 4.184629 ACATCTCGCTTCCAATGAGTTAC 58.815 43.478 0.00 0.00 0.00 2.50
5996 26670 4.471904 ACATCTCGCTTCCAATGAGTTA 57.528 40.909 0.00 0.00 0.00 2.24
6010 26684 0.304705 GTGGCCGCATTTACATCTCG 59.695 55.000 12.58 0.00 0.00 4.04
6017 26691 3.482436 CCCTAAATAGTGGCCGCATTTA 58.518 45.455 20.59 21.45 0.00 1.40
6019 26693 1.478654 CCCCTAAATAGTGGCCGCATT 60.479 52.381 20.59 13.03 0.00 3.56
6021 26695 0.983905 TCCCCTAAATAGTGGCCGCA 60.984 55.000 20.59 4.87 0.00 5.69
6025 26699 1.697982 ACGGATCCCCTAAATAGTGGC 59.302 52.381 6.06 0.00 0.00 5.01
6028 26702 4.140853 TCCACTACGGATCCCCTAAATAGT 60.141 45.833 6.06 2.30 39.64 2.12
6088 26762 3.623960 TGCTCCGTTTATTTGTTATCCCG 59.376 43.478 0.00 0.00 0.00 5.14
6090 26764 6.617879 AGTTTGCTCCGTTTATTTGTTATCC 58.382 36.000 0.00 0.00 0.00 2.59
6131 26805 8.817092 TCCCAATATAGTGAAAAAGGTAAAGG 57.183 34.615 0.79 0.00 0.00 3.11
6136 26810 6.494059 AGCTTCCCAATATAGTGAAAAAGGT 58.506 36.000 0.79 5.16 0.00 3.50
6140 26814 9.920946 AATAGAAGCTTCCCAATATAGTGAAAA 57.079 29.630 22.81 0.00 0.00 2.29
6150 26824 5.134725 ACCATCAATAGAAGCTTCCCAAT 57.865 39.130 22.81 11.31 0.00 3.16
6208 26883 6.930731 AGACTAACAGAAAAGCAACCAAAAA 58.069 32.000 0.00 0.00 0.00 1.94
6209 26884 6.524101 AGACTAACAGAAAAGCAACCAAAA 57.476 33.333 0.00 0.00 0.00 2.44
6211 26886 7.817418 ATAAGACTAACAGAAAAGCAACCAA 57.183 32.000 0.00 0.00 0.00 3.67
6356 27034 9.352784 TCAAAAACCATATGCGAAGATTTTAAG 57.647 29.630 0.00 0.00 0.00 1.85
6368 27046 7.869800 TGTGGAATTTTTCAAAAACCATATGC 58.130 30.769 7.92 0.00 39.06 3.14
6388 27066 8.646004 TGAACATTATTTTCCAAGAATTGTGGA 58.354 29.630 3.73 3.73 46.99 4.02
6549 27232 9.017509 TCTTTCAAGAATCTAGAAAATGCACAT 57.982 29.630 0.00 0.00 31.59 3.21
6627 27311 1.201429 AAGGACCGGTCAGCTGGATT 61.201 55.000 34.40 14.30 43.97 3.01
6628 27312 1.201429 AAAGGACCGGTCAGCTGGAT 61.201 55.000 34.40 11.20 43.97 3.41
6629 27313 1.415672 AAAAGGACCGGTCAGCTGGA 61.416 55.000 34.40 0.00 43.97 3.86
6630 27314 1.073199 AAAAGGACCGGTCAGCTGG 59.927 57.895 34.40 0.00 46.63 4.85
6631 27315 0.250295 TCAAAAGGACCGGTCAGCTG 60.250 55.000 34.40 23.67 0.00 4.24
6695 27379 1.050988 TAGAGGCTCATCCCAGGCAC 61.051 60.000 18.26 0.00 41.49 5.01
6729 27413 3.313526 AGTGCTCATTTATGCGATGGAAC 59.686 43.478 0.00 0.00 0.00 3.62
6730 27414 3.544684 AGTGCTCATTTATGCGATGGAA 58.455 40.909 0.00 0.00 0.00 3.53
6731 27415 3.133691 GAGTGCTCATTTATGCGATGGA 58.866 45.455 0.00 0.00 0.00 3.41
6733 27417 4.056740 AGAGAGTGCTCATTTATGCGATG 58.943 43.478 1.82 0.00 43.81 3.84
6737 27421 6.857777 ATAACAGAGAGTGCTCATTTATGC 57.142 37.500 1.82 0.00 43.81 3.14
6747 27431 4.482386 TGACGTACAATAACAGAGAGTGC 58.518 43.478 0.00 0.00 0.00 4.40
6752 27436 9.210426 GCATTAAAATGACGTACAATAACAGAG 57.790 33.333 6.87 0.00 38.70 3.35
6784 27468 7.336931 TGAGAAAAAGGACCTACTATTTGATGC 59.663 37.037 0.00 0.00 0.00 3.91
6785 27469 8.792830 TGAGAAAAAGGACCTACTATTTGATG 57.207 34.615 0.00 0.00 0.00 3.07
6786 27470 9.807921 TTTGAGAAAAAGGACCTACTATTTGAT 57.192 29.630 0.00 0.00 0.00 2.57
6787 27471 9.635404 TTTTGAGAAAAAGGACCTACTATTTGA 57.365 29.630 0.00 0.00 0.00 2.69
6811 27495 9.987272 CAGGACCTTCTATTTGAATTTTCTTTT 57.013 29.630 0.00 0.00 33.71 2.27
6815 27499 7.468141 ACCAGGACCTTCTATTTGAATTTTC 57.532 36.000 0.00 0.00 33.71 2.29
6849 27533 0.742281 CGAAGTCCCTCCTCGTCGTA 60.742 60.000 0.00 0.00 32.79 3.43
6862 27546 1.149148 GCACAAGGGAGAACGAAGTC 58.851 55.000 0.00 0.00 45.00 3.01
6921 27877 1.425412 ACTCAAAATCGAACGACCGG 58.575 50.000 0.00 0.00 0.00 5.28
7060 28025 0.512952 ACTCAAAAGCGTGATCGTGC 59.487 50.000 0.96 0.96 39.49 5.34
7242 28252 9.906660 TTATTAGTTGAAACAGTGGCATTTAAG 57.093 29.630 0.00 0.00 0.00 1.85
7385 28396 4.433186 TTTGGCCGTAATGACATCAAAG 57.567 40.909 0.00 0.00 0.00 2.77
7397 28446 5.986501 AAATAAAAGTGGATTTGGCCGTA 57.013 34.783 0.00 0.00 0.00 4.02
7398 28447 4.882842 AAATAAAAGTGGATTTGGCCGT 57.117 36.364 0.00 0.00 0.00 5.68
7399 28448 5.616645 GCAAAAATAAAAGTGGATTTGGCCG 60.617 40.000 0.00 0.00 0.00 6.13
7400 28449 5.616645 CGCAAAAATAAAAGTGGATTTGGCC 60.617 40.000 0.00 0.00 0.00 5.36
7401 28450 5.381477 CGCAAAAATAAAAGTGGATTTGGC 58.619 37.500 0.00 0.00 0.00 4.52
7402 28451 5.106752 CCCGCAAAAATAAAAGTGGATTTGG 60.107 40.000 0.00 0.00 33.57 3.28
7403 28452 5.106752 CCCCGCAAAAATAAAAGTGGATTTG 60.107 40.000 0.00 0.00 33.57 2.32
7404 28453 5.000591 CCCCGCAAAAATAAAAGTGGATTT 58.999 37.500 0.00 0.00 33.57 2.17
7405 28454 4.564613 CCCCCGCAAAAATAAAAGTGGATT 60.565 41.667 0.00 0.00 33.57 3.01
7406 28455 3.055458 CCCCCGCAAAAATAAAAGTGGAT 60.055 43.478 0.00 0.00 33.57 3.41
7407 28456 2.300437 CCCCCGCAAAAATAAAAGTGGA 59.700 45.455 0.00 0.00 33.57 4.02
7408 28457 2.037902 ACCCCCGCAAAAATAAAAGTGG 59.962 45.455 0.00 0.00 0.00 4.00
7409 28458 3.394674 ACCCCCGCAAAAATAAAAGTG 57.605 42.857 0.00 0.00 0.00 3.16
7410 28459 3.057386 CGTACCCCCGCAAAAATAAAAGT 60.057 43.478 0.00 0.00 0.00 2.66
7411 28460 3.503891 CGTACCCCCGCAAAAATAAAAG 58.496 45.455 0.00 0.00 0.00 2.27
7412 28461 2.230750 CCGTACCCCCGCAAAAATAAAA 59.769 45.455 0.00 0.00 0.00 1.52
7413 28462 1.817447 CCGTACCCCCGCAAAAATAAA 59.183 47.619 0.00 0.00 0.00 1.40
7414 28463 1.461559 CCGTACCCCCGCAAAAATAA 58.538 50.000 0.00 0.00 0.00 1.40
7415 28464 1.031029 GCCGTACCCCCGCAAAAATA 61.031 55.000 0.00 0.00 0.00 1.40
7416 28465 2.344981 GCCGTACCCCCGCAAAAAT 61.345 57.895 0.00 0.00 0.00 1.82
7417 28466 2.984718 GCCGTACCCCCGCAAAAA 60.985 61.111 0.00 0.00 0.00 1.94
7422 28471 4.807631 ATTTGGCCGTACCCCCGC 62.808 66.667 0.00 0.00 37.83 6.13
7423 28472 2.515290 GATTTGGCCGTACCCCCG 60.515 66.667 0.00 0.00 37.83 5.73
7424 28473 2.124024 GGATTTGGCCGTACCCCC 60.124 66.667 0.00 0.00 37.83 5.40
7425 28474 1.751544 GTGGATTTGGCCGTACCCC 60.752 63.158 0.00 0.00 37.83 4.95
7426 28475 0.323087 AAGTGGATTTGGCCGTACCC 60.323 55.000 0.00 0.00 37.83 3.69
7427 28476 1.201414 CAAAGTGGATTTGGCCGTACC 59.799 52.381 0.00 0.00 43.88 3.34
7428 28477 2.156098 TCAAAGTGGATTTGGCCGTAC 58.844 47.619 0.00 0.00 46.93 3.67
7484 28533 5.408604 GCAAACTGCAGAAGCTACTTTACTA 59.591 40.000 23.35 0.00 44.26 1.82
7487 28536 4.749245 GCAAACTGCAGAAGCTACTTTA 57.251 40.909 23.35 0.00 44.26 1.85
7539 28711 1.079405 TGTCGGTCGAAATGGAGGC 60.079 57.895 0.00 0.00 0.00 4.70
7547 28719 2.649034 GACCTGCTGTCGGTCGAA 59.351 61.111 0.00 0.00 41.29 3.71
7600 28772 2.426023 GTCGTGCCAAGGGTGACT 59.574 61.111 0.00 0.00 0.00 3.41
7621 28793 1.106944 GTGGTTGTCCAGTTGGGTGG 61.107 60.000 0.00 0.00 45.24 4.61
7653 28825 5.997746 TGTCTTCTCGATCAGGTTGATTTTT 59.002 36.000 0.00 0.00 37.20 1.94
7655 28827 5.152623 TGTCTTCTCGATCAGGTTGATTT 57.847 39.130 0.00 0.00 37.20 2.17
7656 28828 4.808414 TGTCTTCTCGATCAGGTTGATT 57.192 40.909 0.00 0.00 37.20 2.57
7657 28829 4.021104 TGTTGTCTTCTCGATCAGGTTGAT 60.021 41.667 0.00 0.00 40.34 2.57
7658 28830 3.320826 TGTTGTCTTCTCGATCAGGTTGA 59.679 43.478 0.00 0.00 0.00 3.18
7659 28831 3.653344 TGTTGTCTTCTCGATCAGGTTG 58.347 45.455 0.00 0.00 0.00 3.77
7660 28832 4.336889 TTGTTGTCTTCTCGATCAGGTT 57.663 40.909 0.00 0.00 0.00 3.50
7661 28833 4.039245 TCTTTGTTGTCTTCTCGATCAGGT 59.961 41.667 0.00 0.00 0.00 4.00
7662 28834 4.560128 TCTTTGTTGTCTTCTCGATCAGG 58.440 43.478 0.00 0.00 0.00 3.86
7663 28835 6.530913 TTTCTTTGTTGTCTTCTCGATCAG 57.469 37.500 0.00 0.00 0.00 2.90
7664 28836 6.538742 ACTTTTCTTTGTTGTCTTCTCGATCA 59.461 34.615 0.00 0.00 0.00 2.92
7665 28837 6.848296 CACTTTTCTTTGTTGTCTTCTCGATC 59.152 38.462 0.00 0.00 0.00 3.69
7666 28838 6.238484 CCACTTTTCTTTGTTGTCTTCTCGAT 60.238 38.462 0.00 0.00 0.00 3.59
7667 28839 5.064707 CCACTTTTCTTTGTTGTCTTCTCGA 59.935 40.000 0.00 0.00 0.00 4.04
7668 28840 5.064707 TCCACTTTTCTTTGTTGTCTTCTCG 59.935 40.000 0.00 0.00 0.00 4.04
7669 28841 6.436843 TCCACTTTTCTTTGTTGTCTTCTC 57.563 37.500 0.00 0.00 0.00 2.87
7670 28842 6.659242 TCTTCCACTTTTCTTTGTTGTCTTCT 59.341 34.615 0.00 0.00 0.00 2.85
7672 28844 6.834168 TCTTCCACTTTTCTTTGTTGTCTT 57.166 33.333 0.00 0.00 0.00 3.01
7674 28846 6.852664 TCTTCTTCCACTTTTCTTTGTTGTC 58.147 36.000 0.00 0.00 0.00 3.18
7675 28847 6.834168 TCTTCTTCCACTTTTCTTTGTTGT 57.166 33.333 0.00 0.00 0.00 3.32
7677 28849 7.703058 TCTTCTTCTTCCACTTTTCTTTGTT 57.297 32.000 0.00 0.00 0.00 2.83
7678 28850 7.629437 GCTTCTTCTTCTTCCACTTTTCTTTGT 60.629 37.037 0.00 0.00 0.00 2.83
7679 28851 6.694844 GCTTCTTCTTCTTCCACTTTTCTTTG 59.305 38.462 0.00 0.00 0.00 2.77
7680 28852 6.605194 AGCTTCTTCTTCTTCCACTTTTCTTT 59.395 34.615 0.00 0.00 0.00 2.52
7681 28853 6.125719 AGCTTCTTCTTCTTCCACTTTTCTT 58.874 36.000 0.00 0.00 0.00 2.52
7682 28854 5.689835 AGCTTCTTCTTCTTCCACTTTTCT 58.310 37.500 0.00 0.00 0.00 2.52
7683 28855 5.529060 TGAGCTTCTTCTTCTTCCACTTTTC 59.471 40.000 0.00 0.00 0.00 2.29
7684 28856 5.440610 TGAGCTTCTTCTTCTTCCACTTTT 58.559 37.500 0.00 0.00 0.00 2.27
7685 28857 5.041191 TGAGCTTCTTCTTCTTCCACTTT 57.959 39.130 0.00 0.00 0.00 2.66
7686 28858 4.696479 TGAGCTTCTTCTTCTTCCACTT 57.304 40.909 0.00 0.00 0.00 3.16
7687 28859 4.640364 CTTGAGCTTCTTCTTCTTCCACT 58.360 43.478 0.00 0.00 0.00 4.00
7688 28860 3.188254 GCTTGAGCTTCTTCTTCTTCCAC 59.812 47.826 0.00 0.00 38.21 4.02
7703 28875 3.186119 CTGTTGTCTAGCTAGCTTGAGC 58.814 50.000 26.10 20.21 43.19 4.26
7704 28876 3.445450 TCCTGTTGTCTAGCTAGCTTGAG 59.555 47.826 26.10 17.32 0.00 3.02
7707 28879 4.090090 TCTTCCTGTTGTCTAGCTAGCTT 58.910 43.478 24.88 7.25 0.00 3.74
7708 28880 3.699038 CTCTTCCTGTTGTCTAGCTAGCT 59.301 47.826 23.12 23.12 0.00 3.32
7710 28882 3.445450 TGCTCTTCCTGTTGTCTAGCTAG 59.555 47.826 15.01 15.01 0.00 3.42
7712 28884 2.028567 GTGCTCTTCCTGTTGTCTAGCT 60.029 50.000 0.00 0.00 0.00 3.32
7713 28885 2.342179 GTGCTCTTCCTGTTGTCTAGC 58.658 52.381 0.00 0.00 0.00 3.42
7714 28886 2.354203 GGGTGCTCTTCCTGTTGTCTAG 60.354 54.545 0.00 0.00 0.00 2.43
7715 28887 1.623811 GGGTGCTCTTCCTGTTGTCTA 59.376 52.381 0.00 0.00 0.00 2.59
7716 28888 0.398318 GGGTGCTCTTCCTGTTGTCT 59.602 55.000 0.00 0.00 0.00 3.41
7717 28889 0.108585 TGGGTGCTCTTCCTGTTGTC 59.891 55.000 0.00 0.00 0.00 3.18
7718 28890 0.550914 TTGGGTGCTCTTCCTGTTGT 59.449 50.000 0.00 0.00 0.00 3.32
7723 30014 2.587522 GTTTTCTTGGGTGCTCTTCCT 58.412 47.619 0.00 0.00 0.00 3.36
7731 30022 2.383855 TCCTTGTGGTTTTCTTGGGTG 58.616 47.619 0.00 0.00 34.23 4.61
8075 30389 6.934645 TGAAAAGAATAGAGGAAATCACACGT 59.065 34.615 0.00 0.00 0.00 4.49
8101 30417 5.688621 ACACACGTATGTAACAGTACACAAG 59.311 40.000 0.00 0.00 42.99 3.16
8104 30420 4.319115 CGACACACGTATGTAACAGTACAC 59.681 45.833 0.00 0.00 38.89 2.90
8513 31123 0.463295 CGAAGGAGCCAGTGATGCAT 60.463 55.000 0.00 0.00 0.00 3.96
8514 31124 1.078918 CGAAGGAGCCAGTGATGCA 60.079 57.895 0.00 0.00 0.00 3.96
8515 31125 3.805267 CGAAGGAGCCAGTGATGC 58.195 61.111 0.00 0.00 0.00 3.91
8591 31572 0.100682 GGATCTGACAGTAAGCGCGA 59.899 55.000 12.10 0.00 0.00 5.87
8592 31573 0.101399 AGGATCTGACAGTAAGCGCG 59.899 55.000 0.00 0.00 0.00 6.86
8597 31578 1.364678 TGGGGGAGGATCTGACAGTAA 59.635 52.381 1.59 0.00 33.73 2.24
8604 31585 4.756804 TCCATGGGGGAGGATCTG 57.243 61.111 13.02 0.00 42.15 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.