Multiple sequence alignment - TraesCS7D01G048900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G048900 chr7D 100.000 6307 0 0 1 6307 25188088 25194394 0.000000e+00 11647.0
1 TraesCS7D01G048900 chr7D 84.743 1927 239 31 2591 4484 25271664 25273568 0.000000e+00 1879.0
2 TraesCS7D01G048900 chr7D 82.782 1905 291 24 2598 4479 24947602 24945712 0.000000e+00 1666.0
3 TraesCS7D01G048900 chr7D 92.869 589 30 7 1175 1763 24949590 24949014 0.000000e+00 845.0
4 TraesCS7D01G048900 chr7D 84.845 805 78 28 996 1793 25270128 25270895 0.000000e+00 771.0
5 TraesCS7D01G048900 chr7D 100.000 28 0 0 4878 4905 80435871 80435898 1.100000e-02 52.8
6 TraesCS7D01G048900 chr7A 89.868 3109 202 46 2039 5097 26030921 26033966 0.000000e+00 3892.0
7 TraesCS7D01G048900 chr7A 83.295 2197 283 47 2591 4755 26043909 26046053 0.000000e+00 1947.0
8 TraesCS7D01G048900 chr7A 88.584 1603 95 29 315 1851 26029160 26030740 0.000000e+00 1866.0
9 TraesCS7D01G048900 chr7A 82.800 1907 287 27 2598 4479 25752563 25750673 0.000000e+00 1666.0
10 TraesCS7D01G048900 chr7A 82.399 1909 290 27 2598 4479 37720383 37722272 0.000000e+00 1622.0
11 TraesCS7D01G048900 chr7A 89.077 769 61 15 5546 6300 26034636 26035395 0.000000e+00 933.0
12 TraesCS7D01G048900 chr7A 92.869 589 33 6 1175 1763 25754873 25754294 0.000000e+00 846.0
13 TraesCS7D01G048900 chr7A 91.557 533 45 0 1232 1764 26039580 26040112 0.000000e+00 736.0
14 TraesCS7D01G048900 chr7A 84.360 422 37 14 5101 5517 26034001 26034398 2.760000e-103 387.0
15 TraesCS7D01G048900 chr7A 89.677 155 13 2 79 232 26029002 26029154 1.790000e-45 195.0
16 TraesCS7D01G048900 chr7A 90.476 126 12 0 25 150 26028874 26028999 3.910000e-37 167.0
17 TraesCS7D01G048900 chr7A 100.000 28 0 0 4878 4905 94499610 94499583 1.100000e-02 52.8
18 TraesCS7D01G048900 chr7A 100.000 28 0 0 4878 4905 222519961 222519934 1.100000e-02 52.8
19 TraesCS7D01G048900 chr4A 82.442 1908 295 23 2598 4479 708612430 708614323 0.000000e+00 1631.0
20 TraesCS7D01G048900 chr4A 91.374 626 43 7 1175 1793 708610386 708611007 0.000000e+00 846.0
21 TraesCS7D01G048900 chrUn 92.391 1012 62 8 2321 3323 332282630 332283635 0.000000e+00 1428.0
22 TraesCS7D01G048900 chrUn 86.822 1328 80 34 506 1763 332280943 332282245 0.000000e+00 1395.0
23 TraesCS7D01G048900 chrUn 90.773 737 41 17 3324 4043 468581920 468582646 0.000000e+00 959.0
24 TraesCS7D01G048900 chrUn 81.877 927 135 27 3838 4756 50424715 50425616 0.000000e+00 750.0
25 TraesCS7D01G048900 chrUn 86.667 540 65 5 3244 3782 50424044 50424577 5.440000e-165 592.0
26 TraesCS7D01G048900 chrUn 85.094 530 79 0 2671 3200 474278491 474277962 5.560000e-150 542.0
27 TraesCS7D01G048900 chrUn 83.976 493 43 13 1 465 326028312 326028796 2.090000e-119 440.0
28 TraesCS7D01G048900 chrUn 83.976 493 43 13 1 465 327955527 327956011 2.090000e-119 440.0
29 TraesCS7D01G048900 chrUn 83.976 493 43 13 1 465 339889005 339889489 2.090000e-119 440.0
30 TraesCS7D01G048900 chrUn 83.976 493 43 13 1 465 349957435 349957919 2.090000e-119 440.0
31 TraesCS7D01G048900 chrUn 83.871 496 44 13 1 468 387893807 387893320 2.090000e-119 440.0
32 TraesCS7D01G048900 chrUn 84.591 318 37 9 5546 5854 334885273 334885587 7.940000e-79 305.0
33 TraesCS7D01G048900 chrUn 84.459 148 7 6 2105 2236 332282475 332282622 1.430000e-26 132.0
34 TraesCS7D01G048900 chrUn 97.222 36 1 0 4600 4635 334883032 334883067 1.900000e-05 62.1
35 TraesCS7D01G048900 chr6D 93.820 534 33 0 1232 1765 55882281 55882814 0.000000e+00 804.0
36 TraesCS7D01G048900 chr6B 93.820 534 33 0 1232 1765 125725326 125725859 0.000000e+00 804.0
37 TraesCS7D01G048900 chr6B 87.805 615 75 0 3861 4475 125728987 125729601 0.000000e+00 721.0
38 TraesCS7D01G048900 chr6B 83.210 542 80 8 3245 3780 125728314 125728850 2.640000e-133 486.0
39 TraesCS7D01G048900 chr6B 100.000 28 0 0 4878 4905 692093810 692093783 1.100000e-02 52.8
40 TraesCS7D01G048900 chr7B 100.000 29 0 0 429 457 439260067 439260039 3.000000e-03 54.7
41 TraesCS7D01G048900 chr3D 100.000 29 0 0 4878 4906 15000991 15001019 3.000000e-03 54.7
42 TraesCS7D01G048900 chr5B 100.000 28 0 0 4878 4905 112556654 112556681 1.100000e-02 52.8
43 TraesCS7D01G048900 chr5B 100.000 28 0 0 4878 4905 693998247 693998274 1.100000e-02 52.8
44 TraesCS7D01G048900 chr1B 100.000 28 0 0 4878 4905 69836105 69836078 1.100000e-02 52.8
45 TraesCS7D01G048900 chr1B 100.000 28 0 0 4878 4905 344049370 344049397 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G048900 chr7D 25188088 25194394 6306 False 11647.000000 11647 100.000000 1 6307 1 chr7D.!!$F1 6306
1 TraesCS7D01G048900 chr7D 25270128 25273568 3440 False 1325.000000 1879 84.794000 996 4484 2 chr7D.!!$F3 3488
2 TraesCS7D01G048900 chr7D 24945712 24949590 3878 True 1255.500000 1666 87.825500 1175 4479 2 chr7D.!!$R1 3304
3 TraesCS7D01G048900 chr7A 37720383 37722272 1889 False 1622.000000 1622 82.399000 2598 4479 1 chr7A.!!$F1 1881
4 TraesCS7D01G048900 chr7A 26039580 26046053 6473 False 1341.500000 1947 87.426000 1232 4755 2 chr7A.!!$F3 3523
5 TraesCS7D01G048900 chr7A 25750673 25754873 4200 True 1256.000000 1666 87.834500 1175 4479 2 chr7A.!!$R3 3304
6 TraesCS7D01G048900 chr7A 26028874 26035395 6521 False 1240.000000 3892 88.673667 25 6300 6 chr7A.!!$F2 6275
7 TraesCS7D01G048900 chr4A 708610386 708614323 3937 False 1238.500000 1631 86.908000 1175 4479 2 chr4A.!!$F1 3304
8 TraesCS7D01G048900 chrUn 332280943 332283635 2692 False 985.000000 1428 87.890667 506 3323 3 chrUn.!!$F7 2817
9 TraesCS7D01G048900 chrUn 468581920 468582646 726 False 959.000000 959 90.773000 3324 4043 1 chrUn.!!$F5 719
10 TraesCS7D01G048900 chrUn 50424044 50425616 1572 False 671.000000 750 84.272000 3244 4756 2 chrUn.!!$F6 1512
11 TraesCS7D01G048900 chrUn 474277962 474278491 529 True 542.000000 542 85.094000 2671 3200 1 chrUn.!!$R2 529
12 TraesCS7D01G048900 chr6D 55882281 55882814 533 False 804.000000 804 93.820000 1232 1765 1 chr6D.!!$F1 533
13 TraesCS7D01G048900 chr6B 125725326 125729601 4275 False 670.333333 804 88.278333 1232 4475 3 chr6B.!!$F1 3243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 389 0.038067 TCGAATTCGGACGAAGCCAA 60.038 50.0 26.47 1.16 40.29 4.52 F
1963 2405 0.037975 GCCTTGCTGGTGTTTGATGG 60.038 55.0 0.00 0.00 38.35 3.51 F
2100 2596 0.099082 GCGGAGAAGTAGACACCTCG 59.901 60.0 0.00 0.00 0.00 4.63 F
3454 7886 0.109781 GGTGTGTTACTTGCATGCGG 60.110 55.0 14.09 10.98 0.00 5.69 F
4356 8952 0.031857 TGGCGTTCATGGCAGTTTTG 59.968 50.0 0.00 0.00 39.79 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 2596 0.249699 TGACGTGTCATGACCCACAC 60.250 55.000 22.85 13.58 39.70 3.82 R
3584 8030 1.144057 GTCCTGGGGTCTGCATACG 59.856 63.158 0.00 0.00 0.00 3.06 R
3655 8101 2.710377 ACCTTGAAGCACATATTCGCA 58.290 42.857 0.00 0.00 0.00 5.10 R
4904 9520 1.000955 CTGTTTGTCAGGCTACTCCGT 59.999 52.381 0.00 0.00 40.23 4.69 R
5530 10344 0.178975 AAGAATGGAACGGCCCAACA 60.179 50.000 0.00 0.00 40.04 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 2.309528 TGTTTATAGCTCCCGTGCAG 57.690 50.000 0.00 0.00 34.99 4.41
165 240 5.373812 AAATCTACGGTGGAATCTTGGAT 57.626 39.130 0.00 0.00 0.00 3.41
167 242 6.688073 AATCTACGGTGGAATCTTGGATAT 57.312 37.500 0.00 0.00 0.00 1.63
214 290 6.809630 AATGTCTAGAACTTTCTTTCCTGC 57.190 37.500 0.00 0.00 38.70 4.85
242 318 6.932356 CACAACATGCCAATCTCTAGTTAT 57.068 37.500 0.00 0.00 0.00 1.89
243 319 7.325660 CACAACATGCCAATCTCTAGTTATT 57.674 36.000 0.00 0.00 0.00 1.40
244 320 7.765307 CACAACATGCCAATCTCTAGTTATTT 58.235 34.615 0.00 0.00 0.00 1.40
245 321 8.246180 CACAACATGCCAATCTCTAGTTATTTT 58.754 33.333 0.00 0.00 0.00 1.82
246 322 8.806146 ACAACATGCCAATCTCTAGTTATTTTT 58.194 29.630 0.00 0.00 0.00 1.94
266 342 5.359194 TTTTGGGGTTTTGCTAAATGTCA 57.641 34.783 0.00 0.00 0.00 3.58
267 343 5.559148 TTTGGGGTTTTGCTAAATGTCAT 57.441 34.783 0.00 0.00 0.00 3.06
268 344 4.533919 TGGGGTTTTGCTAAATGTCATG 57.466 40.909 0.00 0.00 0.00 3.07
269 345 3.900601 TGGGGTTTTGCTAAATGTCATGT 59.099 39.130 0.00 0.00 0.00 3.21
270 346 4.244862 GGGGTTTTGCTAAATGTCATGTG 58.755 43.478 0.00 0.00 0.00 3.21
271 347 4.262420 GGGGTTTTGCTAAATGTCATGTGT 60.262 41.667 0.00 0.00 0.00 3.72
272 348 4.923281 GGGTTTTGCTAAATGTCATGTGTC 59.077 41.667 0.00 0.00 0.00 3.67
273 349 5.278957 GGGTTTTGCTAAATGTCATGTGTCT 60.279 40.000 0.00 0.00 0.00 3.41
274 350 5.630680 GGTTTTGCTAAATGTCATGTGTCTG 59.369 40.000 0.00 0.00 0.00 3.51
275 351 6.437928 GTTTTGCTAAATGTCATGTGTCTGA 58.562 36.000 0.00 0.00 0.00 3.27
276 352 6.631971 TTTGCTAAATGTCATGTGTCTGAA 57.368 33.333 0.00 0.00 0.00 3.02
277 353 6.822667 TTGCTAAATGTCATGTGTCTGAAT 57.177 33.333 0.00 0.00 0.00 2.57
278 354 6.822667 TGCTAAATGTCATGTGTCTGAATT 57.177 33.333 0.00 0.00 0.00 2.17
279 355 7.920160 TGCTAAATGTCATGTGTCTGAATTA 57.080 32.000 0.00 0.00 0.00 1.40
280 356 8.510243 TGCTAAATGTCATGTGTCTGAATTAT 57.490 30.769 0.00 0.00 0.00 1.28
281 357 8.959548 TGCTAAATGTCATGTGTCTGAATTATT 58.040 29.630 0.00 0.00 0.00 1.40
282 358 9.793252 GCTAAATGTCATGTGTCTGAATTATTT 57.207 29.630 0.00 0.00 0.00 1.40
285 361 9.985730 AAATGTCATGTGTCTGAATTATTTGTT 57.014 25.926 0.00 0.00 0.00 2.83
286 362 8.975410 ATGTCATGTGTCTGAATTATTTGTTG 57.025 30.769 0.00 0.00 0.00 3.33
287 363 7.369607 TGTCATGTGTCTGAATTATTTGTTGG 58.630 34.615 0.00 0.00 0.00 3.77
288 364 6.308766 GTCATGTGTCTGAATTATTTGTTGGC 59.691 38.462 0.00 0.00 0.00 4.52
289 365 5.781210 TGTGTCTGAATTATTTGTTGGCA 57.219 34.783 0.00 0.00 0.00 4.92
290 366 6.343716 TGTGTCTGAATTATTTGTTGGCAT 57.656 33.333 0.00 0.00 0.00 4.40
291 367 6.389091 TGTGTCTGAATTATTTGTTGGCATC 58.611 36.000 0.00 0.00 0.00 3.91
292 368 6.015603 TGTGTCTGAATTATTTGTTGGCATCA 60.016 34.615 0.00 0.00 0.00 3.07
293 369 6.529125 GTGTCTGAATTATTTGTTGGCATCAG 59.471 38.462 3.23 3.23 35.53 2.90
294 370 6.209192 TGTCTGAATTATTTGTTGGCATCAGT 59.791 34.615 8.34 1.24 35.66 3.41
295 371 6.749118 GTCTGAATTATTTGTTGGCATCAGTC 59.251 38.462 8.34 1.10 35.66 3.51
296 372 5.639757 TGAATTATTTGTTGGCATCAGTCG 58.360 37.500 0.00 0.00 0.00 4.18
297 373 5.414144 TGAATTATTTGTTGGCATCAGTCGA 59.586 36.000 0.00 0.00 0.00 4.20
298 374 5.895636 ATTATTTGTTGGCATCAGTCGAA 57.104 34.783 0.00 0.00 0.00 3.71
299 375 5.895636 TTATTTGTTGGCATCAGTCGAAT 57.104 34.783 0.00 0.00 0.00 3.34
300 376 4.789012 ATTTGTTGGCATCAGTCGAATT 57.211 36.364 0.00 0.00 0.00 2.17
301 377 3.829886 TTGTTGGCATCAGTCGAATTC 57.170 42.857 0.00 0.00 0.00 2.17
302 378 1.731709 TGTTGGCATCAGTCGAATTCG 59.268 47.619 21.78 21.78 41.45 3.34
303 379 1.062587 GTTGGCATCAGTCGAATTCGG 59.937 52.381 26.47 11.75 40.29 4.30
304 380 0.534873 TGGCATCAGTCGAATTCGGA 59.465 50.000 26.47 16.59 40.29 4.55
305 381 0.931005 GGCATCAGTCGAATTCGGAC 59.069 55.000 26.47 21.16 40.29 4.79
306 382 0.572590 GCATCAGTCGAATTCGGACG 59.427 55.000 26.47 14.95 40.29 4.79
307 383 1.797713 GCATCAGTCGAATTCGGACGA 60.798 52.381 26.47 19.22 40.29 4.20
308 384 2.526077 CATCAGTCGAATTCGGACGAA 58.474 47.619 26.47 9.75 40.12 3.85
309 385 2.257974 TCAGTCGAATTCGGACGAAG 57.742 50.000 26.47 16.62 40.12 3.79
310 386 0.640768 CAGTCGAATTCGGACGAAGC 59.359 55.000 26.47 9.13 40.12 3.86
311 387 0.458025 AGTCGAATTCGGACGAAGCC 60.458 55.000 26.47 6.14 40.12 4.35
312 388 0.734942 GTCGAATTCGGACGAAGCCA 60.735 55.000 26.47 1.93 40.12 4.75
313 389 0.038067 TCGAATTCGGACGAAGCCAA 60.038 50.000 26.47 1.16 40.29 4.52
323 399 2.445155 GAAGCCAATGGTGGGGGT 59.555 61.111 0.00 0.00 46.09 4.95
327 403 2.850290 CCAATGGTGGGGGTGACA 59.150 61.111 0.00 0.00 41.77 3.58
346 422 1.599606 ATGAGGAGCTCAGCGACGTT 61.600 55.000 17.19 0.00 44.08 3.99
378 464 2.718731 CGAGCTAGGACCTCGCTG 59.281 66.667 24.30 12.82 44.53 5.18
465 551 2.670148 GGTGCGGGTCAAGGAGGAT 61.670 63.158 0.00 0.00 0.00 3.24
474 560 1.004758 CAAGGAGGATGGAGGGGGA 59.995 63.158 0.00 0.00 0.00 4.81
475 561 1.059006 CAAGGAGGATGGAGGGGGAG 61.059 65.000 0.00 0.00 0.00 4.30
477 563 2.706071 GAGGATGGAGGGGGAGGT 59.294 66.667 0.00 0.00 0.00 3.85
480 571 3.493303 GATGGAGGGGGAGGTGGC 61.493 72.222 0.00 0.00 0.00 5.01
498 589 3.723348 GCTTTGCGGGTGTCGGTC 61.723 66.667 0.00 0.00 39.69 4.79
499 590 2.280524 CTTTGCGGGTGTCGGTCA 60.281 61.111 0.00 0.00 39.69 4.02
500 591 2.280524 TTTGCGGGTGTCGGTCAG 60.281 61.111 0.00 0.00 39.69 3.51
501 592 4.980805 TTGCGGGTGTCGGTCAGC 62.981 66.667 0.00 0.00 43.02 4.26
536 627 1.776710 TGGGCTTACAGGGGTGGTT 60.777 57.895 0.00 0.00 0.00 3.67
539 630 1.228429 GCTTACAGGGGTGGTTGCA 60.228 57.895 0.00 0.00 0.00 4.08
562 653 3.639222 CGACAAGCAGCAACGTTAG 57.361 52.632 0.00 0.00 0.00 2.34
563 654 0.163788 CGACAAGCAGCAACGTTAGG 59.836 55.000 0.00 0.00 0.00 2.69
564 655 0.517316 GACAAGCAGCAACGTTAGGG 59.483 55.000 0.00 0.00 0.00 3.53
565 656 0.889186 ACAAGCAGCAACGTTAGGGG 60.889 55.000 0.00 0.00 0.00 4.79
566 657 1.303317 AAGCAGCAACGTTAGGGGG 60.303 57.895 0.00 0.00 0.00 5.40
567 658 1.774894 AAGCAGCAACGTTAGGGGGA 61.775 55.000 0.00 0.00 0.00 4.81
570 661 1.538135 AGCAACGTTAGGGGGAGGT 60.538 57.895 0.00 0.00 0.00 3.85
634 737 0.686441 TGTAGTCAGACGGATGGGGG 60.686 60.000 0.00 0.00 0.00 5.40
760 863 2.555325 TGGTGTTGGTAGAGTCGTACTG 59.445 50.000 0.00 0.00 0.00 2.74
812 946 0.788391 ATTCGTTGAGAAACGGACGC 59.212 50.000 10.72 0.00 45.45 5.19
928 1065 2.286772 CGTTCCAAAGTCCAAACCTTCG 60.287 50.000 0.00 0.00 0.00 3.79
972 1119 1.605058 GCAGTAGAGAGGCCCACGAA 61.605 60.000 0.00 0.00 0.00 3.85
993 1140 2.331132 GCCAGCCAGCTTGAGACAC 61.331 63.158 0.00 0.00 0.00 3.67
1017 1168 2.765807 ATGGCGTCCTCCTCCCAG 60.766 66.667 0.00 0.00 0.00 4.45
1038 1195 0.771127 CCCACTCCCACCAAGAAGAA 59.229 55.000 0.00 0.00 0.00 2.52
1186 1375 4.224274 AACCGGCCGTCAACGTCA 62.224 61.111 26.12 0.00 37.74 4.35
1294 1486 2.987547 GACGACCCGGACACTCCA 60.988 66.667 0.73 0.00 35.91 3.86
1408 1600 3.157252 ATCACCGCCATCTCCGCT 61.157 61.111 0.00 0.00 0.00 5.52
1426 1618 4.794439 CAGATCGCCGTCGTGCCA 62.794 66.667 0.00 0.00 36.96 4.92
1522 1714 2.188161 GGGGCCGTTCAACGTGAAA 61.188 57.895 9.52 0.00 40.58 2.69
1765 1968 3.108376 GGTCTCCCTCTTCAGGTACATT 58.892 50.000 0.00 0.00 38.30 2.71
1770 1973 3.907474 TCCCTCTTCAGGTACATTTGTCA 59.093 43.478 0.00 0.00 38.30 3.58
1785 1989 1.609794 GTCACTTCCCCTCTCCGGT 60.610 63.158 0.00 0.00 0.00 5.28
1796 2000 1.405661 CCTCTCCGGTAAGCAACTTCC 60.406 57.143 0.00 0.00 0.00 3.46
1847 2086 2.900546 TGGCCAAATTTAATTGTCCGGT 59.099 40.909 0.61 0.00 30.99 5.28
1849 2088 3.056465 GGCCAAATTTAATTGTCCGGTCA 60.056 43.478 0.00 0.00 0.00 4.02
1850 2089 4.561105 GCCAAATTTAATTGTCCGGTCAA 58.439 39.130 16.44 16.44 0.00 3.18
1851 2090 4.625311 GCCAAATTTAATTGTCCGGTCAAG 59.375 41.667 18.74 4.11 0.00 3.02
1853 2092 6.451393 CCAAATTTAATTGTCCGGTCAAGAA 58.549 36.000 18.74 12.50 0.00 2.52
1854 2093 6.364976 CCAAATTTAATTGTCCGGTCAAGAAC 59.635 38.462 18.74 0.88 0.00 3.01
1859 2098 2.526304 TGTCCGGTCAAGAACTCAAG 57.474 50.000 0.00 0.00 0.00 3.02
1866 2105 4.498241 CGGTCAAGAACTCAAGATGATGA 58.502 43.478 0.00 0.00 0.00 2.92
1870 2109 7.099764 GGTCAAGAACTCAAGATGATGAACTA 58.900 38.462 0.00 0.00 0.00 2.24
1871 2110 7.064016 GGTCAAGAACTCAAGATGATGAACTAC 59.936 40.741 0.00 0.00 0.00 2.73
1872 2111 7.600375 GTCAAGAACTCAAGATGATGAACTACA 59.400 37.037 0.00 0.00 0.00 2.74
1873 2112 7.600375 TCAAGAACTCAAGATGATGAACTACAC 59.400 37.037 0.00 0.00 0.00 2.90
1878 2117 6.870965 ACTCAAGATGATGAACTACACAAGAC 59.129 38.462 0.00 0.00 0.00 3.01
1879 2118 6.997655 TCAAGATGATGAACTACACAAGACT 58.002 36.000 0.00 0.00 0.00 3.24
1881 2120 7.600375 TCAAGATGATGAACTACACAAGACTTC 59.400 37.037 0.00 0.00 0.00 3.01
1883 2122 7.445121 AGATGATGAACTACACAAGACTTCAA 58.555 34.615 0.00 0.00 0.00 2.69
1884 2123 7.933577 AGATGATGAACTACACAAGACTTCAAA 59.066 33.333 0.00 0.00 0.00 2.69
1885 2124 7.246674 TGATGAACTACACAAGACTTCAAAC 57.753 36.000 0.00 0.00 0.00 2.93
1887 2126 6.903883 TGAACTACACAAGACTTCAAACTC 57.096 37.500 0.00 0.00 0.00 3.01
1888 2127 5.518847 TGAACTACACAAGACTTCAAACTCG 59.481 40.000 0.00 0.00 0.00 4.18
1891 2130 6.103997 ACTACACAAGACTTCAAACTCGAAA 58.896 36.000 0.00 0.00 0.00 3.46
1892 2131 5.217895 ACACAAGACTTCAAACTCGAAAC 57.782 39.130 0.00 0.00 0.00 2.78
1893 2132 4.201685 ACACAAGACTTCAAACTCGAAACG 60.202 41.667 0.00 0.00 0.00 3.60
1919 2337 9.783425 GAACAATTTGATCACGAATTCTTTTTC 57.217 29.630 2.79 0.00 37.84 2.29
1945 2368 9.532697 CTTTTAAAAAGCATGTACATTTGATGC 57.467 29.630 5.37 8.00 42.37 3.91
1963 2405 0.037975 GCCTTGCTGGTGTTTGATGG 60.038 55.000 0.00 0.00 38.35 3.51
2006 2494 5.132648 ACCAATCTACCATATGCTTCCAAGA 59.867 40.000 0.00 0.00 0.00 3.02
2008 2496 6.547141 CCAATCTACCATATGCTTCCAAGAAA 59.453 38.462 0.00 0.00 0.00 2.52
2009 2497 7.068593 CCAATCTACCATATGCTTCCAAGAAAA 59.931 37.037 0.00 0.00 0.00 2.29
2010 2498 8.636213 CAATCTACCATATGCTTCCAAGAAAAT 58.364 33.333 0.00 0.00 0.00 1.82
2011 2499 7.572523 TCTACCATATGCTTCCAAGAAAATG 57.427 36.000 0.00 0.00 0.00 2.32
2012 2500 7.345691 TCTACCATATGCTTCCAAGAAAATGA 58.654 34.615 0.00 0.00 0.00 2.57
2013 2501 6.212888 ACCATATGCTTCCAAGAAAATGAC 57.787 37.500 0.00 0.00 0.00 3.06
2014 2502 5.716228 ACCATATGCTTCCAAGAAAATGACA 59.284 36.000 0.00 0.00 0.00 3.58
2015 2503 6.038356 CCATATGCTTCCAAGAAAATGACAC 58.962 40.000 0.00 0.00 0.00 3.67
2016 2504 4.525912 ATGCTTCCAAGAAAATGACACC 57.474 40.909 0.00 0.00 0.00 4.16
2017 2505 3.565307 TGCTTCCAAGAAAATGACACCT 58.435 40.909 0.00 0.00 0.00 4.00
2018 2506 3.569701 TGCTTCCAAGAAAATGACACCTC 59.430 43.478 0.00 0.00 0.00 3.85
2019 2507 3.823304 GCTTCCAAGAAAATGACACCTCT 59.177 43.478 0.00 0.00 0.00 3.69
2020 2508 4.083057 GCTTCCAAGAAAATGACACCTCTC 60.083 45.833 0.00 0.00 0.00 3.20
2021 2509 4.982241 TCCAAGAAAATGACACCTCTCT 57.018 40.909 0.00 0.00 0.00 3.10
2022 2510 4.899502 TCCAAGAAAATGACACCTCTCTC 58.100 43.478 0.00 0.00 0.00 3.20
2023 2511 4.006319 CCAAGAAAATGACACCTCTCTCC 58.994 47.826 0.00 0.00 0.00 3.71
2024 2512 3.990959 AGAAAATGACACCTCTCTCCC 57.009 47.619 0.00 0.00 0.00 4.30
2025 2513 3.525862 AGAAAATGACACCTCTCTCCCT 58.474 45.455 0.00 0.00 0.00 4.20
2026 2514 3.517500 AGAAAATGACACCTCTCTCCCTC 59.482 47.826 0.00 0.00 0.00 4.30
2027 2515 2.938428 AATGACACCTCTCTCCCTCT 57.062 50.000 0.00 0.00 0.00 3.69
2028 2516 2.452600 ATGACACCTCTCTCCCTCTC 57.547 55.000 0.00 0.00 0.00 3.20
2029 2517 1.377690 TGACACCTCTCTCCCTCTCT 58.622 55.000 0.00 0.00 0.00 3.10
2030 2518 1.283613 TGACACCTCTCTCCCTCTCTC 59.716 57.143 0.00 0.00 0.00 3.20
2031 2519 1.283613 GACACCTCTCTCCCTCTCTCA 59.716 57.143 0.00 0.00 0.00 3.27
2032 2520 1.284785 ACACCTCTCTCCCTCTCTCAG 59.715 57.143 0.00 0.00 0.00 3.35
2033 2521 1.563879 CACCTCTCTCCCTCTCTCAGA 59.436 57.143 0.00 0.00 0.00 3.27
2034 2522 2.175499 CACCTCTCTCCCTCTCTCAGAT 59.825 54.545 0.00 0.00 0.00 2.90
2035 2523 2.175499 ACCTCTCTCCCTCTCTCAGATG 59.825 54.545 0.00 0.00 0.00 2.90
2036 2524 2.233271 CTCTCTCCCTCTCTCAGATGC 58.767 57.143 0.00 0.00 0.00 3.91
2037 2525 1.852309 TCTCTCCCTCTCTCAGATGCT 59.148 52.381 0.00 0.00 0.00 3.79
2100 2596 0.099082 GCGGAGAAGTAGACACCTCG 59.901 60.000 0.00 0.00 0.00 4.63
2152 3025 9.090692 CCTTGCTTAATTACATCCAAGAAAATG 57.909 33.333 11.93 0.00 33.40 2.32
2172 3150 3.954200 TGAGATGATTGCAACAGCCTAA 58.046 40.909 0.00 0.00 0.00 2.69
2176 3169 5.717119 AGATGATTGCAACAGCCTAAAAAG 58.283 37.500 0.00 0.00 0.00 2.27
2183 3177 6.892658 TGCAACAGCCTAAAAAGATTCTAA 57.107 33.333 0.00 0.00 0.00 2.10
2185 3191 7.145323 TGCAACAGCCTAAAAAGATTCTAAAC 58.855 34.615 0.00 0.00 0.00 2.01
2191 3197 8.023706 CAGCCTAAAAAGATTCTAAACAACTCC 58.976 37.037 0.00 0.00 0.00 3.85
2236 3243 5.919141 ACTCCGATCGAGGATTAAATTAACG 59.081 40.000 18.66 0.00 43.57 3.18
2238 3245 5.916883 TCCGATCGAGGATTAAATTAACGTC 59.083 40.000 18.66 0.00 34.92 4.34
2241 3248 6.635641 CGATCGAGGATTAAATTAACGTCTGA 59.364 38.462 10.26 0.00 0.00 3.27
2293 3461 5.127682 GGCCATCCTCATTTTTAGTCAATGT 59.872 40.000 0.00 0.00 33.91 2.71
2369 4762 2.668457 CTGACAACGACTACTCAATGGC 59.332 50.000 0.00 0.00 0.00 4.40
2370 4763 2.299013 TGACAACGACTACTCAATGGCT 59.701 45.455 0.00 0.00 0.00 4.75
2373 4775 2.926200 CAACGACTACTCAATGGCTCAG 59.074 50.000 0.00 0.00 0.00 3.35
2411 5138 4.935702 TCACTGAAGCAACATGGAAAAAG 58.064 39.130 0.00 0.00 0.00 2.27
2425 6408 4.789784 TGGAAAAAGTAAAGCGAAATCCG 58.210 39.130 0.00 0.00 42.21 4.18
2912 7312 1.208614 GTTGCTGCAGGCTTCTTCG 59.791 57.895 17.12 0.00 42.39 3.79
2917 7317 0.946221 CTGCAGGCTTCTTCGTCGTT 60.946 55.000 5.57 0.00 0.00 3.85
2944 7344 3.327757 ACATCATCGTGCCTATTGGGTAT 59.672 43.478 0.00 0.00 37.43 2.73
2959 7359 9.367160 CCTATTGGGTATTGGTTTGATTTCTAT 57.633 33.333 0.00 0.00 0.00 1.98
3148 7548 2.429571 GCGTCACTTACCGCGACA 60.430 61.111 8.23 0.00 40.56 4.35
3311 7742 4.638865 GGGAAAAGTGTGGACATACATACC 59.361 45.833 2.12 0.00 33.53 2.73
3454 7886 0.109781 GGTGTGTTACTTGCATGCGG 60.110 55.000 14.09 10.98 0.00 5.69
3529 7961 6.890293 ACCAGGTAAGGATTCTATCAACTTC 58.110 40.000 0.00 0.00 0.00 3.01
3555 7993 3.513119 GGCATGCTATACAGATCTGGAGA 59.487 47.826 26.08 15.02 34.19 3.71
3556 7994 4.381825 GGCATGCTATACAGATCTGGAGAG 60.382 50.000 22.99 22.99 35.90 3.20
3571 8009 4.100653 TCTGGAGAGCTAGATCCACAATTG 59.899 45.833 3.92 3.24 40.70 2.32
3584 8030 5.902613 TCCACAATTGACATTCTTCCATC 57.097 39.130 13.59 0.00 0.00 3.51
3631 8077 5.937975 TCATCACAGAGTACATCATTGGA 57.062 39.130 0.00 0.00 0.00 3.53
3640 8086 7.510685 ACAGAGTACATCATTGGATACCTGTAT 59.489 37.037 0.00 0.00 30.39 2.29
3800 8316 3.683802 AGCTCTATTTGGCCATCATAGC 58.316 45.455 20.74 18.38 0.00 2.97
3801 8317 3.073503 AGCTCTATTTGGCCATCATAGCA 59.926 43.478 20.74 12.47 0.00 3.49
3919 8515 1.075482 CTTGGGACAGCATGGTGGT 59.925 57.895 27.32 13.82 43.62 4.16
3963 8559 0.869454 GCGACATTGAGCTCCTCTCG 60.869 60.000 12.15 12.74 44.86 4.04
4125 8721 0.178068 CCCCACTCCTCGTATGGTTG 59.822 60.000 0.00 0.00 0.00 3.77
4350 8946 2.359850 GGTCTGGCGTTCATGGCA 60.360 61.111 0.00 0.00 42.76 4.92
4356 8952 0.031857 TGGCGTTCATGGCAGTTTTG 59.968 50.000 0.00 0.00 39.79 2.44
4494 9090 5.106555 CCCAGTGTACAACTAAGCATCTTTG 60.107 44.000 0.00 0.00 36.83 2.77
4540 9136 5.299949 GGAAAATTGGAATTGTGAGCAAGT 58.700 37.500 0.00 0.00 38.10 3.16
4541 9137 5.178067 GGAAAATTGGAATTGTGAGCAAGTG 59.822 40.000 0.00 0.00 38.10 3.16
4597 9195 6.196079 ACCTTTTAAAGATGAGAAATCGGC 57.804 37.500 6.24 0.00 0.00 5.54
4628 9228 5.545658 ATTCTATTGTGCAAAGTACCACG 57.454 39.130 0.00 0.00 34.77 4.94
4635 9235 3.496884 TGTGCAAAGTACCACGAAGATTC 59.503 43.478 0.00 0.00 34.77 2.52
4639 9239 5.066634 TGCAAAGTACCACGAAGATTCAAAA 59.933 36.000 0.00 0.00 0.00 2.44
4642 9242 7.359595 CAAAGTACCACGAAGATTCAAAATGA 58.640 34.615 0.00 0.00 0.00 2.57
4643 9243 6.481954 AGTACCACGAAGATTCAAAATGAC 57.518 37.500 0.00 0.00 0.00 3.06
4645 9245 5.766150 ACCACGAAGATTCAAAATGACAA 57.234 34.783 0.00 0.00 0.00 3.18
4646 9246 5.519722 ACCACGAAGATTCAAAATGACAAC 58.480 37.500 0.00 0.00 0.00 3.32
4647 9247 4.917415 CCACGAAGATTCAAAATGACAACC 59.083 41.667 0.00 0.00 0.00 3.77
4648 9248 5.278463 CCACGAAGATTCAAAATGACAACCT 60.278 40.000 0.00 0.00 0.00 3.50
4649 9249 6.208644 CACGAAGATTCAAAATGACAACCTT 58.791 36.000 0.00 0.00 0.00 3.50
4650 9250 6.697019 CACGAAGATTCAAAATGACAACCTTT 59.303 34.615 0.00 0.00 0.00 3.11
4651 9251 6.697019 ACGAAGATTCAAAATGACAACCTTTG 59.303 34.615 0.00 0.00 0.00 2.77
4661 9261 7.633193 AAATGACAACCTTTGTGTAGTAACA 57.367 32.000 0.00 0.00 45.52 2.41
4674 9274 6.220930 TGTGTAGTAACAGCCTAAAGAACAG 58.779 40.000 0.00 0.00 35.91 3.16
4710 9311 7.148590 GCAATAGGTTTTCACTGCCAAATTAAG 60.149 37.037 0.00 0.00 0.00 1.85
4726 9327 2.762535 TAAGTGTTGTCCCAGCTAGC 57.237 50.000 6.62 6.62 0.00 3.42
4759 9363 9.649167 GTGATTCCTTGATTCTTTGAAATTCAT 57.351 29.630 0.00 0.00 0.00 2.57
4771 9375 8.592105 TCTTTGAAATTCATTAAAAGCAGGTG 57.408 30.769 0.00 0.00 0.00 4.00
4787 9391 1.613437 AGGTGGCATGTAACTTGCAAC 59.387 47.619 0.00 7.66 42.25 4.17
4807 9411 6.240665 GCAACTTGCAAGTTTTTAACTGAAC 58.759 36.000 36.19 12.91 46.52 3.18
4844 9448 3.813166 ACACACAATGTACCACAACTAGC 59.187 43.478 0.00 0.00 40.88 3.42
4846 9450 4.274705 CACACAATGTACCACAACTAGCAA 59.725 41.667 0.00 0.00 0.00 3.91
4860 9464 5.180117 ACAACTAGCAACTTTATGACTGCAG 59.820 40.000 13.48 13.48 37.26 4.41
4867 9471 6.208204 AGCAACTTTATGACTGCAGATTCTTT 59.792 34.615 23.35 0.00 37.26 2.52
4869 9473 7.061557 GCAACTTTATGACTGCAGATTCTTTTC 59.938 37.037 23.35 5.96 34.87 2.29
4870 9474 7.992754 ACTTTATGACTGCAGATTCTTTTCT 57.007 32.000 23.35 0.00 0.00 2.52
4889 9505 6.973460 TTTCTTTTAAACCCGGTTCCATTA 57.027 33.333 2.46 0.00 0.00 1.90
4904 9520 6.339587 GTTCCATTAACCAGAATGAAACCA 57.660 37.500 0.00 0.00 39.69 3.67
4905 9521 5.975693 TCCATTAACCAGAATGAAACCAC 57.024 39.130 0.00 0.00 39.69 4.16
4906 9522 4.457603 TCCATTAACCAGAATGAAACCACG 59.542 41.667 0.00 0.00 39.69 4.94
4908 9524 2.649531 AACCAGAATGAAACCACGGA 57.350 45.000 0.00 0.00 39.69 4.69
4909 9525 2.185004 ACCAGAATGAAACCACGGAG 57.815 50.000 0.00 0.00 39.69 4.63
4910 9526 1.420138 ACCAGAATGAAACCACGGAGT 59.580 47.619 0.00 0.00 40.52 3.85
4911 9527 2.635915 ACCAGAATGAAACCACGGAGTA 59.364 45.455 0.00 0.00 36.82 2.59
4912 9528 3.262420 CCAGAATGAAACCACGGAGTAG 58.738 50.000 0.00 0.00 36.82 2.57
4913 9529 2.673368 CAGAATGAAACCACGGAGTAGC 59.327 50.000 0.00 0.00 36.82 3.58
4914 9530 2.007608 GAATGAAACCACGGAGTAGCC 58.992 52.381 0.00 0.00 41.61 3.93
4915 9531 1.276622 ATGAAACCACGGAGTAGCCT 58.723 50.000 0.00 0.00 41.61 4.58
4916 9532 0.320374 TGAAACCACGGAGTAGCCTG 59.680 55.000 0.00 0.00 41.61 4.85
4917 9533 0.606604 GAAACCACGGAGTAGCCTGA 59.393 55.000 0.00 0.00 41.61 3.86
4918 9534 0.320697 AAACCACGGAGTAGCCTGAC 59.679 55.000 0.00 0.00 41.61 3.51
4919 9535 0.830444 AACCACGGAGTAGCCTGACA 60.830 55.000 0.00 0.00 41.61 3.58
4920 9536 0.830444 ACCACGGAGTAGCCTGACAA 60.830 55.000 0.00 0.00 41.61 3.18
4921 9537 0.320374 CCACGGAGTAGCCTGACAAA 59.680 55.000 0.00 0.00 41.61 2.83
4922 9538 1.429463 CACGGAGTAGCCTGACAAAC 58.571 55.000 0.00 0.00 41.61 2.93
4923 9539 1.045407 ACGGAGTAGCCTGACAAACA 58.955 50.000 0.00 0.00 41.94 2.83
4924 9540 1.000955 ACGGAGTAGCCTGACAAACAG 59.999 52.381 0.00 0.00 41.94 3.16
4963 9579 4.995920 GCAGTACGCGAATTCTTATTCTC 58.004 43.478 15.93 0.00 38.40 2.87
4985 9602 6.324770 TCTCTCAGTTGCCATTATATGACTGA 59.675 38.462 0.00 0.00 38.52 3.41
4991 9608 9.027129 CAGTTGCCATTATATGACTGAAATTTG 57.973 33.333 0.00 0.00 35.71 2.32
4992 9609 8.752187 AGTTGCCATTATATGACTGAAATTTGT 58.248 29.630 0.00 0.00 0.00 2.83
4994 9611 8.929827 TGCCATTATATGACTGAAATTTGTTG 57.070 30.769 0.00 0.00 0.00 3.33
5020 9638 2.763448 ACACAGAGACAAGGATAGAGGC 59.237 50.000 0.00 0.00 0.00 4.70
5023 9641 4.036518 ACAGAGACAAGGATAGAGGCAAT 58.963 43.478 0.00 0.00 0.00 3.56
5025 9643 4.100653 CAGAGACAAGGATAGAGGCAATGA 59.899 45.833 0.00 0.00 0.00 2.57
5035 9653 5.931146 GGATAGAGGCAATGATCAACTACTG 59.069 44.000 0.00 0.00 0.00 2.74
5039 9657 3.199508 AGGCAATGATCAACTACTGCTCT 59.800 43.478 0.00 1.86 0.00 4.09
5040 9658 3.311871 GGCAATGATCAACTACTGCTCTG 59.688 47.826 0.00 0.00 0.00 3.35
5041 9659 4.186926 GCAATGATCAACTACTGCTCTGA 58.813 43.478 0.00 0.00 0.00 3.27
5042 9660 4.033817 GCAATGATCAACTACTGCTCTGAC 59.966 45.833 0.00 0.00 0.00 3.51
5043 9661 5.173664 CAATGATCAACTACTGCTCTGACA 58.826 41.667 0.00 0.00 0.00 3.58
5044 9662 4.179926 TGATCAACTACTGCTCTGACAC 57.820 45.455 0.00 0.00 0.00 3.67
5045 9663 3.573967 TGATCAACTACTGCTCTGACACA 59.426 43.478 0.00 0.00 0.00 3.72
5046 9664 3.650070 TCAACTACTGCTCTGACACAG 57.350 47.619 0.00 0.00 39.86 3.66
5052 9670 1.202463 ACTGCTCTGACACAGTGACAC 60.202 52.381 7.81 0.00 45.19 3.67
5070 9688 4.180057 GACACTAGCAGTCCAGATTTCTG 58.820 47.826 0.39 0.39 43.40 3.02
5079 9697 1.283029 TCCAGATTTCTGCCCTCCAAG 59.717 52.381 1.90 0.00 42.47 3.61
5081 9699 2.363683 CAGATTTCTGCCCTCCAAGAC 58.636 52.381 0.00 0.00 37.15 3.01
5082 9700 2.026449 CAGATTTCTGCCCTCCAAGACT 60.026 50.000 0.00 0.00 37.15 3.24
5087 9705 1.988107 TCTGCCCTCCAAGACTTGAAT 59.012 47.619 16.99 0.00 0.00 2.57
5088 9706 2.089980 CTGCCCTCCAAGACTTGAATG 58.910 52.381 16.99 6.01 0.00 2.67
5089 9707 1.704628 TGCCCTCCAAGACTTGAATGA 59.295 47.619 16.99 4.76 0.00 2.57
5090 9708 2.108075 TGCCCTCCAAGACTTGAATGAA 59.892 45.455 16.99 0.00 0.00 2.57
5092 9710 3.057245 GCCCTCCAAGACTTGAATGAAAC 60.057 47.826 16.99 0.00 0.00 2.78
5094 9712 4.144297 CCTCCAAGACTTGAATGAAACCA 58.856 43.478 16.99 0.00 0.00 3.67
5095 9713 4.768968 CCTCCAAGACTTGAATGAAACCAT 59.231 41.667 16.99 0.00 0.00 3.55
5096 9714 5.336213 CCTCCAAGACTTGAATGAAACCATG 60.336 44.000 16.99 0.00 0.00 3.66
5097 9715 4.022068 TCCAAGACTTGAATGAAACCATGC 60.022 41.667 16.99 0.00 0.00 4.06
5099 9717 4.778534 AGACTTGAATGAAACCATGCTG 57.221 40.909 0.00 0.00 0.00 4.41
5121 9771 8.201464 TGCTGATAATCTTCTTATTTCACGGTA 58.799 33.333 0.00 0.00 0.00 4.02
5140 9792 1.680338 AACAGACCAGTGCCAAGAAC 58.320 50.000 0.00 0.00 0.00 3.01
5153 9805 5.418840 AGTGCCAAGAACTTTCTTCAGAAAA 59.581 36.000 1.04 0.00 45.23 2.29
5223 9875 5.018539 AGCCTACACATCGCATTACTAAA 57.981 39.130 0.00 0.00 0.00 1.85
5224 9876 4.809426 AGCCTACACATCGCATTACTAAAC 59.191 41.667 0.00 0.00 0.00 2.01
5228 9880 7.125755 CCTACACATCGCATTACTAAACATTG 58.874 38.462 0.00 0.00 0.00 2.82
5236 9888 7.317390 TCGCATTACTAAACATTGACAGTAGA 58.683 34.615 0.00 0.00 0.00 2.59
5257 9909 5.001237 GAGTTTACTCTGAGCCTCTTACC 57.999 47.826 4.19 0.00 39.81 2.85
5258 9910 4.417437 AGTTTACTCTGAGCCTCTTACCA 58.583 43.478 4.19 0.00 0.00 3.25
5259 9911 4.464597 AGTTTACTCTGAGCCTCTTACCAG 59.535 45.833 4.19 0.00 0.00 4.00
5260 9912 2.909504 ACTCTGAGCCTCTTACCAGA 57.090 50.000 4.19 0.00 34.81 3.86
5289 9941 3.127533 GCCGGCAACTCGCTTCAT 61.128 61.111 24.80 0.00 41.91 2.57
5291 9943 2.464459 CCGGCAACTCGCTTCATCC 61.464 63.158 0.00 0.00 41.91 3.51
5293 9945 1.377202 GGCAACTCGCTTCATCCCA 60.377 57.895 0.00 0.00 41.91 4.37
5294 9946 1.648467 GGCAACTCGCTTCATCCCAC 61.648 60.000 0.00 0.00 41.91 4.61
5295 9947 1.970917 GCAACTCGCTTCATCCCACG 61.971 60.000 0.00 0.00 37.77 4.94
5296 9948 0.670546 CAACTCGCTTCATCCCACGT 60.671 55.000 0.00 0.00 0.00 4.49
5297 9949 0.670546 AACTCGCTTCATCCCACGTG 60.671 55.000 9.08 9.08 0.00 4.49
5298 9950 1.811266 CTCGCTTCATCCCACGTGG 60.811 63.158 28.26 28.26 0.00 4.94
5308 9960 2.433664 CCACGTGGGGACGTAAGC 60.434 66.667 27.57 0.00 45.26 3.09
5309 9961 2.340809 CACGTGGGGACGTAAGCA 59.659 61.111 7.95 0.00 45.26 3.91
5311 9963 1.301165 ACGTGGGGACGTAAGCAAC 60.301 57.895 0.00 0.00 45.19 4.17
5337 9989 1.668101 GCACCTGTCCCTACTCCTCG 61.668 65.000 0.00 0.00 0.00 4.63
5374 10026 0.179119 GTGGTCGGACTATTCCACGG 60.179 60.000 8.23 0.00 43.00 4.94
5418 10070 4.216472 GGGACTGAAAGAATTGAACTGGAC 59.784 45.833 0.00 0.00 37.43 4.02
5426 10078 2.044793 ATTGAACTGGACTGGAGGGA 57.955 50.000 0.00 0.00 0.00 4.20
5427 10079 1.352083 TTGAACTGGACTGGAGGGAG 58.648 55.000 0.00 0.00 0.00 4.30
5428 10080 0.487325 TGAACTGGACTGGAGGGAGA 59.513 55.000 0.00 0.00 0.00 3.71
5429 10081 1.132849 TGAACTGGACTGGAGGGAGAA 60.133 52.381 0.00 0.00 0.00 2.87
5430 10082 1.552792 GAACTGGACTGGAGGGAGAAG 59.447 57.143 0.00 0.00 0.00 2.85
5431 10083 0.252467 ACTGGACTGGAGGGAGAAGG 60.252 60.000 0.00 0.00 0.00 3.46
5433 10085 0.252284 TGGACTGGAGGGAGAAGGAC 60.252 60.000 0.00 0.00 0.00 3.85
5434 10086 1.324005 GGACTGGAGGGAGAAGGACG 61.324 65.000 0.00 0.00 0.00 4.79
5436 10088 2.683933 TGGAGGGAGAAGGACGGC 60.684 66.667 0.00 0.00 0.00 5.68
5438 10090 2.726351 GGAGGGAGAAGGACGGCTG 61.726 68.421 0.00 0.00 0.00 4.85
5440 10092 1.950973 GAGGGAGAAGGACGGCTGAC 61.951 65.000 0.00 0.00 0.00 3.51
5468 10120 4.440127 GCATGGCTGCGGTTTGGG 62.440 66.667 0.00 0.00 38.92 4.12
5469 10121 3.762247 CATGGCTGCGGTTTGGGG 61.762 66.667 0.00 0.00 0.00 4.96
5472 10124 4.759205 GGCTGCGGTTTGGGGGAT 62.759 66.667 0.00 0.00 0.00 3.85
5517 10170 3.141649 AGGGACTGGTATATTCTACCCGT 59.858 47.826 0.00 0.00 40.75 5.28
5519 10172 5.079643 GGGACTGGTATATTCTACCCGTTA 58.920 45.833 0.00 0.00 35.61 3.18
5549 10363 0.178975 TGTTGGGCCGTTCCATTCTT 60.179 50.000 0.00 0.00 36.58 2.52
5550 10364 0.243636 GTTGGGCCGTTCCATTCTTG 59.756 55.000 0.00 0.00 36.58 3.02
5551 10365 1.531739 TTGGGCCGTTCCATTCTTGC 61.532 55.000 0.00 0.00 36.58 4.01
5554 10417 1.459450 GGCCGTTCCATTCTTGCTTA 58.541 50.000 0.00 0.00 34.01 3.09
5556 10419 1.132453 GCCGTTCCATTCTTGCTTACC 59.868 52.381 0.00 0.00 0.00 2.85
5581 10445 6.932356 TCTCTCCATCATAGCATTTTGTTC 57.068 37.500 0.00 0.00 0.00 3.18
5582 10446 6.417258 TCTCTCCATCATAGCATTTTGTTCA 58.583 36.000 0.00 0.00 0.00 3.18
5583 10447 6.317140 TCTCTCCATCATAGCATTTTGTTCAC 59.683 38.462 0.00 0.00 0.00 3.18
5585 10449 4.402155 TCCATCATAGCATTTTGTTCACCC 59.598 41.667 0.00 0.00 0.00 4.61
5587 10451 5.163385 CCATCATAGCATTTTGTTCACCCAT 60.163 40.000 0.00 0.00 0.00 4.00
5593 10459 8.997323 CATAGCATTTTGTTCACCCATTAAAAA 58.003 29.630 0.00 0.00 0.00 1.94
5619 10485 1.290203 AGCATGTTGTAATCGGCTCG 58.710 50.000 0.00 0.00 0.00 5.03
5621 10487 1.267532 GCATGTTGTAATCGGCTCGTG 60.268 52.381 0.00 0.00 0.00 4.35
5629 10495 3.441222 TGTAATCGGCTCGTGAGTTTAGA 59.559 43.478 0.00 0.00 0.00 2.10
5634 10500 2.263945 GGCTCGTGAGTTTAGAAGCTC 58.736 52.381 0.00 0.00 36.87 4.09
5638 10504 3.562505 TCGTGAGTTTAGAAGCTCGAAC 58.437 45.455 0.00 0.00 38.88 3.95
5641 10507 3.734735 GTGAGTTTAGAAGCTCGAACGTT 59.265 43.478 0.00 0.00 38.88 3.99
5708 10575 6.420913 AATATCGCTAAGCTCTTTTCCCTA 57.579 37.500 0.00 0.00 0.00 3.53
5732 10602 9.256477 CTAGTTGAATTACTCAAGTGTGTGTTA 57.744 33.333 5.31 0.00 45.53 2.41
5814 10685 6.524101 TTCCCCTTTATTTGCTTATGTGAC 57.476 37.500 0.00 0.00 0.00 3.67
5847 10721 2.137810 TACTTATGGCCCCAAACTGC 57.862 50.000 0.00 0.00 0.00 4.40
5920 10794 5.049198 ACTCGCCATTGTGAATTATGCTATG 60.049 40.000 0.00 0.00 0.00 2.23
5925 10799 7.573656 CGCCATTGTGAATTATGCTATGTGTAT 60.574 37.037 0.00 0.00 0.00 2.29
5980 10854 5.106197 ACTGCGAGCATTGTTCATTTATTCA 60.106 36.000 0.00 0.00 0.00 2.57
5984 10858 7.804600 TGCGAGCATTGTTCATTTATTCATATC 59.195 33.333 1.35 0.00 0.00 1.63
6022 10896 6.222038 TGTGAATAGTCCTGTATGAACCTC 57.778 41.667 0.00 0.00 0.00 3.85
6029 10903 3.447586 GTCCTGTATGAACCTCTGTGCTA 59.552 47.826 0.00 0.00 0.00 3.49
6045 10919 2.721603 GTGCTATCTCGCTACAATCACG 59.278 50.000 0.00 0.00 0.00 4.35
6050 10924 1.134818 TCTCGCTACAATCACGCCAAT 60.135 47.619 0.00 0.00 0.00 3.16
6055 10929 2.420022 GCTACAATCACGCCAATGTTCT 59.580 45.455 0.00 0.00 0.00 3.01
6100 10974 7.412137 TGACATTATACGAATTGCTCATGAG 57.588 36.000 18.84 18.84 0.00 2.90
6148 11022 5.459107 CGATGGTTTTTATAGTCACTCGGAG 59.541 44.000 2.83 2.83 0.00 4.63
6168 11042 5.116180 GGAGTTGTTCGATTGGTGATCATA 58.884 41.667 0.00 0.00 34.23 2.15
6173 11047 8.522830 AGTTGTTCGATTGGTGATCATAAATTT 58.477 29.630 0.00 0.00 34.23 1.82
6200 11074 9.710979 TTTACGAGCACTAATTATACATTTTGC 57.289 29.630 0.00 0.00 0.00 3.68
6289 11163 6.318144 TCCGTGTGTACTAAAATTTTGTTCCA 59.682 34.615 13.76 7.32 0.00 3.53
6290 11164 6.635239 CCGTGTGTACTAAAATTTTGTTCCAG 59.365 38.462 13.76 5.01 0.00 3.86
6291 11165 7.411274 CGTGTGTACTAAAATTTTGTTCCAGA 58.589 34.615 13.76 6.27 0.00 3.86
6301 11175 8.887036 AAAATTTTGTTCCAGAAGTAATCACC 57.113 30.769 1.75 0.00 0.00 4.02
6302 11176 7.595819 AATTTTGTTCCAGAAGTAATCACCA 57.404 32.000 0.00 0.00 0.00 4.17
6303 11177 6.385649 TTTTGTTCCAGAAGTAATCACCAC 57.614 37.500 0.00 0.00 0.00 4.16
6304 11178 4.974645 TGTTCCAGAAGTAATCACCACT 57.025 40.909 0.00 0.00 0.00 4.00
6305 11179 5.304686 TGTTCCAGAAGTAATCACCACTT 57.695 39.130 0.00 0.00 38.92 3.16
6306 11180 5.063204 TGTTCCAGAAGTAATCACCACTTG 58.937 41.667 0.00 0.00 36.38 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.845305 GTATAGTAATAAACTGCAATCGAACAC 57.155 33.333 0.00 0.00 39.39 3.32
1 2 9.811995 AGTATAGTAATAAACTGCAATCGAACA 57.188 29.630 0.00 0.00 39.39 3.18
63 64 9.921637 AGCTATAAACAAACTCTCTATATCTGC 57.078 33.333 0.00 0.00 0.00 4.26
138 213 4.514401 AGATTCCACCGTAGATTTTGACC 58.486 43.478 0.00 0.00 0.00 4.02
139 214 5.163754 CCAAGATTCCACCGTAGATTTTGAC 60.164 44.000 0.00 0.00 0.00 3.18
144 219 6.688073 ATATCCAAGATTCCACCGTAGATT 57.312 37.500 0.00 0.00 0.00 2.40
150 225 3.251729 CAGCAATATCCAAGATTCCACCG 59.748 47.826 0.00 0.00 0.00 4.94
152 227 5.841957 AACAGCAATATCCAAGATTCCAC 57.158 39.130 0.00 0.00 0.00 4.02
167 242 9.995003 ATTTTTATTATGTTCTCCAAACAGCAA 57.005 25.926 0.00 0.00 33.18 3.91
202 278 0.519077 GTGCCGAGCAGGAAAGAAAG 59.481 55.000 2.12 0.00 45.00 2.62
204 280 0.179032 TTGTGCCGAGCAGGAAAGAA 60.179 50.000 2.12 0.00 45.00 2.52
243 319 5.745227 TGACATTTAGCAAAACCCCAAAAA 58.255 33.333 0.00 0.00 0.00 1.94
244 320 5.359194 TGACATTTAGCAAAACCCCAAAA 57.641 34.783 0.00 0.00 0.00 2.44
245 321 5.163258 ACATGACATTTAGCAAAACCCCAAA 60.163 36.000 0.00 0.00 0.00 3.28
246 322 4.346418 ACATGACATTTAGCAAAACCCCAA 59.654 37.500 0.00 0.00 0.00 4.12
247 323 3.900601 ACATGACATTTAGCAAAACCCCA 59.099 39.130 0.00 0.00 0.00 4.96
248 324 4.244862 CACATGACATTTAGCAAAACCCC 58.755 43.478 0.00 0.00 0.00 4.95
249 325 4.881920 ACACATGACATTTAGCAAAACCC 58.118 39.130 0.00 0.00 0.00 4.11
250 326 5.630680 CAGACACATGACATTTAGCAAAACC 59.369 40.000 0.00 0.00 0.00 3.27
251 327 6.437928 TCAGACACATGACATTTAGCAAAAC 58.562 36.000 0.00 0.00 0.00 2.43
252 328 6.631971 TCAGACACATGACATTTAGCAAAA 57.368 33.333 0.00 0.00 0.00 2.44
253 329 6.631971 TTCAGACACATGACATTTAGCAAA 57.368 33.333 0.00 0.00 0.00 3.68
254 330 6.822667 ATTCAGACACATGACATTTAGCAA 57.177 33.333 0.00 0.00 0.00 3.91
255 331 6.822667 AATTCAGACACATGACATTTAGCA 57.177 33.333 0.00 0.00 0.00 3.49
256 332 9.793252 AAATAATTCAGACACATGACATTTAGC 57.207 29.630 0.00 0.00 0.00 3.09
259 335 9.985730 AACAAATAATTCAGACACATGACATTT 57.014 25.926 0.00 0.00 0.00 2.32
260 336 9.414295 CAACAAATAATTCAGACACATGACATT 57.586 29.630 0.00 0.00 0.00 2.71
261 337 8.030692 CCAACAAATAATTCAGACACATGACAT 58.969 33.333 0.00 0.00 0.00 3.06
262 338 7.369607 CCAACAAATAATTCAGACACATGACA 58.630 34.615 0.00 0.00 0.00 3.58
263 339 6.308766 GCCAACAAATAATTCAGACACATGAC 59.691 38.462 0.00 0.00 0.00 3.06
264 340 6.015603 TGCCAACAAATAATTCAGACACATGA 60.016 34.615 0.00 0.00 0.00 3.07
265 341 6.157904 TGCCAACAAATAATTCAGACACATG 58.842 36.000 0.00 0.00 0.00 3.21
266 342 6.343716 TGCCAACAAATAATTCAGACACAT 57.656 33.333 0.00 0.00 0.00 3.21
267 343 5.781210 TGCCAACAAATAATTCAGACACA 57.219 34.783 0.00 0.00 0.00 3.72
268 344 6.389091 TGATGCCAACAAATAATTCAGACAC 58.611 36.000 0.00 0.00 0.00 3.67
269 345 6.209192 ACTGATGCCAACAAATAATTCAGACA 59.791 34.615 0.00 0.00 32.33 3.41
270 346 6.624423 ACTGATGCCAACAAATAATTCAGAC 58.376 36.000 0.00 0.00 32.33 3.51
271 347 6.403527 CGACTGATGCCAACAAATAATTCAGA 60.404 38.462 0.00 0.00 32.33 3.27
272 348 5.740569 CGACTGATGCCAACAAATAATTCAG 59.259 40.000 0.00 0.00 33.56 3.02
273 349 5.414144 TCGACTGATGCCAACAAATAATTCA 59.586 36.000 0.00 0.00 0.00 2.57
274 350 5.879237 TCGACTGATGCCAACAAATAATTC 58.121 37.500 0.00 0.00 0.00 2.17
275 351 5.895636 TCGACTGATGCCAACAAATAATT 57.104 34.783 0.00 0.00 0.00 1.40
276 352 5.895636 TTCGACTGATGCCAACAAATAAT 57.104 34.783 0.00 0.00 0.00 1.28
277 353 5.895636 ATTCGACTGATGCCAACAAATAA 57.104 34.783 0.00 0.00 0.00 1.40
278 354 5.447144 CGAATTCGACTGATGCCAACAAATA 60.447 40.000 23.29 0.00 43.02 1.40
279 355 4.672542 CGAATTCGACTGATGCCAACAAAT 60.673 41.667 23.29 0.00 43.02 2.32
280 356 3.364864 CGAATTCGACTGATGCCAACAAA 60.365 43.478 23.29 0.00 43.02 2.83
281 357 2.159430 CGAATTCGACTGATGCCAACAA 59.841 45.455 23.29 0.00 43.02 2.83
282 358 1.731709 CGAATTCGACTGATGCCAACA 59.268 47.619 23.29 0.00 43.02 3.33
283 359 1.062587 CCGAATTCGACTGATGCCAAC 59.937 52.381 28.76 0.00 43.02 3.77
284 360 1.066502 TCCGAATTCGACTGATGCCAA 60.067 47.619 28.76 0.00 43.02 4.52
285 361 0.534873 TCCGAATTCGACTGATGCCA 59.465 50.000 28.76 0.00 43.02 4.92
286 362 0.931005 GTCCGAATTCGACTGATGCC 59.069 55.000 28.76 3.09 43.02 4.40
287 363 0.572590 CGTCCGAATTCGACTGATGC 59.427 55.000 28.76 6.33 43.02 3.91
288 364 2.188837 TCGTCCGAATTCGACTGATG 57.811 50.000 28.76 20.64 43.02 3.07
289 365 2.798680 CTTCGTCCGAATTCGACTGAT 58.201 47.619 28.76 0.00 43.02 2.90
290 366 1.731424 GCTTCGTCCGAATTCGACTGA 60.731 52.381 28.76 18.39 43.02 3.41
291 367 0.640768 GCTTCGTCCGAATTCGACTG 59.359 55.000 28.76 16.49 43.02 3.51
292 368 0.458025 GGCTTCGTCCGAATTCGACT 60.458 55.000 28.76 0.00 43.02 4.18
293 369 0.734942 TGGCTTCGTCCGAATTCGAC 60.735 55.000 28.76 21.12 43.02 4.20
294 370 0.038067 TTGGCTTCGTCCGAATTCGA 60.038 50.000 28.76 12.20 43.02 3.71
295 371 1.006832 ATTGGCTTCGTCCGAATTCG 58.993 50.000 20.92 20.92 39.44 3.34
296 372 1.064060 CCATTGGCTTCGTCCGAATTC 59.936 52.381 2.20 0.00 33.28 2.17
297 373 1.094785 CCATTGGCTTCGTCCGAATT 58.905 50.000 2.20 0.00 33.28 2.17
298 374 0.035439 ACCATTGGCTTCGTCCGAAT 60.035 50.000 1.54 0.00 33.28 3.34
299 375 0.953471 CACCATTGGCTTCGTCCGAA 60.953 55.000 1.54 1.81 0.00 4.30
300 376 1.375396 CACCATTGGCTTCGTCCGA 60.375 57.895 1.54 0.00 0.00 4.55
301 377 2.398554 CCACCATTGGCTTCGTCCG 61.399 63.158 1.54 0.00 35.56 4.79
302 378 2.046285 CCCACCATTGGCTTCGTCC 61.046 63.158 1.54 0.00 42.35 4.79
303 379 2.046285 CCCCACCATTGGCTTCGTC 61.046 63.158 1.54 0.00 42.35 4.20
304 380 2.035626 CCCCACCATTGGCTTCGT 59.964 61.111 1.54 0.00 42.35 3.85
305 381 2.755469 CCCCCACCATTGGCTTCG 60.755 66.667 1.54 0.00 42.35 3.79
306 382 1.984026 CACCCCCACCATTGGCTTC 60.984 63.158 1.54 0.00 42.35 3.86
307 383 2.120274 CACCCCCACCATTGGCTT 59.880 61.111 1.54 0.00 42.35 4.35
308 384 2.863484 TCACCCCCACCATTGGCT 60.863 61.111 1.54 0.00 42.35 4.75
309 385 2.679996 GTCACCCCCACCATTGGC 60.680 66.667 1.54 0.00 42.35 4.52
310 386 0.971959 CATGTCACCCCCACCATTGG 60.972 60.000 0.00 0.00 43.50 3.16
311 387 0.039472 TCATGTCACCCCCACCATTG 59.961 55.000 0.00 0.00 0.00 2.82
312 388 0.332632 CTCATGTCACCCCCACCATT 59.667 55.000 0.00 0.00 0.00 3.16
313 389 1.574526 CCTCATGTCACCCCCACCAT 61.575 60.000 0.00 0.00 0.00 3.55
323 399 0.967380 TCGCTGAGCTCCTCATGTCA 60.967 55.000 12.15 0.00 39.92 3.58
327 403 1.599606 AACGTCGCTGAGCTCCTCAT 61.600 55.000 12.15 0.00 39.92 2.90
365 451 0.394488 TGTCTCCAGCGAGGTCCTAG 60.394 60.000 0.00 0.00 39.02 3.02
378 464 1.884579 TCGTAGTGTTGTCCTGTCTCC 59.115 52.381 0.00 0.00 0.00 3.71
392 478 2.266055 GCTTGCTGCCCTCGTAGT 59.734 61.111 0.00 0.00 35.15 2.73
396 482 3.429141 CACAGCTTGCTGCCCTCG 61.429 66.667 20.92 2.99 44.23 4.63
458 544 2.731461 CCTCCCCCTCCATCCTCCT 61.731 68.421 0.00 0.00 0.00 3.69
499 590 2.511829 CTGATCTGCAGCAGCGCT 60.512 61.111 18.43 2.64 46.23 5.92
536 627 2.974148 CTGCTTGTCGCCACTGCA 60.974 61.111 3.37 3.37 38.05 4.41
539 630 2.203195 TTGCTGCTTGTCGCCACT 60.203 55.556 0.00 0.00 38.05 4.00
556 647 0.908180 CCTCAACCTCCCCCTAACGT 60.908 60.000 0.00 0.00 0.00 3.99
557 648 1.623542 CCCTCAACCTCCCCCTAACG 61.624 65.000 0.00 0.00 0.00 3.18
558 649 1.279749 CCCCTCAACCTCCCCCTAAC 61.280 65.000 0.00 0.00 0.00 2.34
559 650 1.084084 CCCCTCAACCTCCCCCTAA 59.916 63.158 0.00 0.00 0.00 2.69
560 651 1.869946 TCCCCTCAACCTCCCCCTA 60.870 63.158 0.00 0.00 0.00 3.53
561 652 3.216371 TCCCCTCAACCTCCCCCT 61.216 66.667 0.00 0.00 0.00 4.79
562 653 2.692741 CTCCCCTCAACCTCCCCC 60.693 72.222 0.00 0.00 0.00 5.40
563 654 2.692741 CCTCCCCTCAACCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
564 655 2.692741 CCCTCCCCTCAACCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
565 656 2.125225 ACCCTCCCCTCAACCTCC 59.875 66.667 0.00 0.00 0.00 4.30
566 657 1.229529 TCACCCTCCCCTCAACCTC 60.230 63.158 0.00 0.00 0.00 3.85
567 658 1.229658 CTCACCCTCCCCTCAACCT 60.230 63.158 0.00 0.00 0.00 3.50
570 661 2.610859 GCCTCACCCTCCCCTCAA 60.611 66.667 0.00 0.00 0.00 3.02
609 712 1.608336 CCGTCTGACTACACCCCCA 60.608 63.158 6.21 0.00 0.00 4.96
646 749 1.153549 CTTCTTCCTCCCGCCGAAG 60.154 63.158 0.00 0.00 37.44 3.79
760 863 1.755380 ACTACGACTTGGGTATCAGCC 59.245 52.381 0.00 0.00 36.00 4.85
812 946 2.579787 GGTCTGGATCGACGCGTG 60.580 66.667 20.70 9.70 34.75 5.34
928 1065 1.816370 CTGTCGTCTCTGCATCGTAC 58.184 55.000 0.00 0.00 0.00 3.67
972 1119 4.044439 CTCAAGCTGGCTGGCCCT 62.044 66.667 9.28 0.00 34.56 5.19
993 1140 0.469917 AGGAGGACGCCATGGTTATG 59.530 55.000 14.67 3.75 0.00 1.90
1017 1168 0.036875 CTTCTTGGTGGGAGTGGGAC 59.963 60.000 0.00 0.00 0.00 4.46
1038 1195 0.904865 TCTGGTCGCCATGGTCTTCT 60.905 55.000 14.67 0.00 30.82 2.85
1134 1323 3.055240 AGAAGAGCAGAGGAGAAATGGTG 60.055 47.826 0.00 0.00 0.00 4.17
1223 1415 0.866483 GGCGAGTTCTCCGACGATTC 60.866 60.000 0.00 0.00 0.00 2.52
1224 1416 1.139095 GGCGAGTTCTCCGACGATT 59.861 57.895 0.00 0.00 0.00 3.34
1291 1483 4.113617 CGGAAGGTGAGGACTGGA 57.886 61.111 0.00 0.00 0.00 3.86
1338 1530 0.603569 GTTGAGGAAGGAGAGCACGA 59.396 55.000 0.00 0.00 0.00 4.35
1408 1600 4.492160 GGCACGACGGCGATCTGA 62.492 66.667 22.49 0.00 41.64 3.27
1603 1795 2.549349 GGTGAGGTTCTTGCCGTAGAAA 60.549 50.000 0.00 0.00 36.01 2.52
1630 1822 1.939769 GCACCACGAGGAGAGAGACC 61.940 65.000 5.68 0.00 38.69 3.85
1765 1968 1.192146 CCGGAGAGGGGAAGTGACAA 61.192 60.000 0.00 0.00 35.97 3.18
1770 1973 0.976590 GCTTACCGGAGAGGGGAAGT 60.977 60.000 9.46 0.00 46.96 3.01
1806 2010 6.762187 TGGCCATGTAATAATGCAATGAAAAG 59.238 34.615 0.00 0.00 0.00 2.27
1847 2086 7.600375 GTGTAGTTCATCATCTTGAGTTCTTGA 59.400 37.037 0.00 0.00 0.00 3.02
1849 2088 7.445121 TGTGTAGTTCATCATCTTGAGTTCTT 58.555 34.615 0.00 0.00 0.00 2.52
1850 2089 6.997655 TGTGTAGTTCATCATCTTGAGTTCT 58.002 36.000 0.00 0.00 0.00 3.01
1851 2090 7.600375 TCTTGTGTAGTTCATCATCTTGAGTTC 59.400 37.037 0.00 0.00 0.00 3.01
1853 2092 6.870965 GTCTTGTGTAGTTCATCATCTTGAGT 59.129 38.462 0.00 0.00 0.00 3.41
1854 2093 7.095910 AGTCTTGTGTAGTTCATCATCTTGAG 58.904 38.462 0.00 0.00 0.00 3.02
1859 2098 7.658179 TTGAAGTCTTGTGTAGTTCATCATC 57.342 36.000 0.00 0.00 36.45 2.92
1866 2105 5.657474 TCGAGTTTGAAGTCTTGTGTAGTT 58.343 37.500 0.00 0.00 0.00 2.24
1870 2109 4.201685 CGTTTCGAGTTTGAAGTCTTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
1871 2110 4.032445 TCGTTTCGAGTTTGAAGTCTTGTG 59.968 41.667 0.00 0.00 0.00 3.33
1872 2111 4.178540 TCGTTTCGAGTTTGAAGTCTTGT 58.821 39.130 0.00 0.00 0.00 3.16
1873 2112 4.772046 TCGTTTCGAGTTTGAAGTCTTG 57.228 40.909 0.00 0.00 0.00 3.02
1878 2117 6.467682 TCAAATTGTTCGTTTCGAGTTTGAAG 59.532 34.615 14.63 0.61 37.14 3.02
1879 2118 6.315551 TCAAATTGTTCGTTTCGAGTTTGAA 58.684 32.000 14.63 0.00 37.14 2.69
1881 2120 6.413526 TGATCAAATTGTTCGTTTCGAGTTTG 59.586 34.615 0.00 11.25 37.14 2.93
1883 2122 5.907391 GTGATCAAATTGTTCGTTTCGAGTT 59.093 36.000 0.00 0.00 37.14 3.01
1884 2123 5.440685 GTGATCAAATTGTTCGTTTCGAGT 58.559 37.500 0.00 0.00 37.14 4.18
1885 2124 4.545807 CGTGATCAAATTGTTCGTTTCGAG 59.454 41.667 0.00 0.00 37.14 4.04
1887 2126 4.450667 TCGTGATCAAATTGTTCGTTTCG 58.549 39.130 0.00 0.00 0.00 3.46
1888 2127 6.911484 ATTCGTGATCAAATTGTTCGTTTC 57.089 33.333 0.00 0.00 0.00 2.78
1891 2130 6.241207 AGAATTCGTGATCAAATTGTTCGT 57.759 33.333 9.57 0.00 0.00 3.85
1892 2131 7.552848 AAAGAATTCGTGATCAAATTGTTCG 57.447 32.000 12.92 4.91 29.94 3.95
1893 2132 9.783425 GAAAAAGAATTCGTGATCAAATTGTTC 57.217 29.630 12.92 7.84 29.94 3.18
1919 2337 9.532697 GCATCAAATGTACATGCTTTTTAAAAG 57.467 29.630 9.63 12.62 39.92 2.27
1929 2352 2.861935 GCAAGGCATCAAATGTACATGC 59.138 45.455 9.63 9.51 41.93 4.06
1930 2353 4.109766 CAGCAAGGCATCAAATGTACATG 58.890 43.478 9.63 0.00 0.00 3.21
1932 2355 2.492881 CCAGCAAGGCATCAAATGTACA 59.507 45.455 0.00 0.00 0.00 2.90
1941 2364 0.961019 TCAAACACCAGCAAGGCATC 59.039 50.000 0.00 0.00 43.14 3.91
1945 2368 0.604578 CCCATCAAACACCAGCAAGG 59.395 55.000 0.00 0.00 45.67 3.61
1982 2424 5.132648 TCTTGGAAGCATATGGTAGATTGGT 59.867 40.000 8.04 0.00 0.00 3.67
1987 2440 7.283127 GTCATTTTCTTGGAAGCATATGGTAGA 59.717 37.037 8.04 4.45 0.00 2.59
1991 2444 6.038356 GTGTCATTTTCTTGGAAGCATATGG 58.962 40.000 4.56 0.00 0.00 2.74
1992 2445 6.038356 GGTGTCATTTTCTTGGAAGCATATG 58.962 40.000 0.00 0.00 0.00 1.78
2006 2494 3.517500 GAGAGGGAGAGAGGTGTCATTTT 59.482 47.826 0.00 0.00 0.00 1.82
2008 2496 2.314549 AGAGAGGGAGAGAGGTGTCATT 59.685 50.000 0.00 0.00 0.00 2.57
2009 2497 1.929494 AGAGAGGGAGAGAGGTGTCAT 59.071 52.381 0.00 0.00 0.00 3.06
2010 2498 1.283613 GAGAGAGGGAGAGAGGTGTCA 59.716 57.143 0.00 0.00 0.00 3.58
2011 2499 1.283613 TGAGAGAGGGAGAGAGGTGTC 59.716 57.143 0.00 0.00 0.00 3.67
2012 2500 1.284785 CTGAGAGAGGGAGAGAGGTGT 59.715 57.143 0.00 0.00 0.00 4.16
2013 2501 1.563879 TCTGAGAGAGGGAGAGAGGTG 59.436 57.143 0.00 0.00 0.00 4.00
2014 2502 1.979809 TCTGAGAGAGGGAGAGAGGT 58.020 55.000 0.00 0.00 0.00 3.85
2015 2503 2.867624 CATCTGAGAGAGGGAGAGAGG 58.132 57.143 0.00 0.00 0.00 3.69
2016 2504 2.158564 AGCATCTGAGAGAGGGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
2017 2505 1.852309 AGCATCTGAGAGAGGGAGAGA 59.148 52.381 0.00 0.00 0.00 3.10
2018 2506 1.958579 CAGCATCTGAGAGAGGGAGAG 59.041 57.143 0.00 0.00 32.44 3.20
2019 2507 1.411359 CCAGCATCTGAGAGAGGGAGA 60.411 57.143 0.00 0.00 32.44 3.71
2020 2508 1.042229 CCAGCATCTGAGAGAGGGAG 58.958 60.000 0.00 0.00 32.44 4.30
2021 2509 0.633378 TCCAGCATCTGAGAGAGGGA 59.367 55.000 0.00 0.00 32.44 4.20
2022 2510 1.042229 CTCCAGCATCTGAGAGAGGG 58.958 60.000 0.00 0.00 33.66 4.30
2023 2511 2.070305 TCTCCAGCATCTGAGAGAGG 57.930 55.000 9.42 0.00 34.97 3.69
2024 2512 4.099727 TCAAATCTCCAGCATCTGAGAGAG 59.900 45.833 15.13 6.67 39.34 3.20
2025 2513 4.028825 TCAAATCTCCAGCATCTGAGAGA 58.971 43.478 13.42 13.42 39.83 3.10
2026 2514 4.403585 TCAAATCTCCAGCATCTGAGAG 57.596 45.455 0.00 1.61 32.44 3.20
2027 2515 4.831674 TTCAAATCTCCAGCATCTGAGA 57.168 40.909 0.00 0.00 32.44 3.27
2028 2516 6.452494 AAATTCAAATCTCCAGCATCTGAG 57.548 37.500 0.00 0.00 32.44 3.35
2029 2517 6.434965 TCAAAATTCAAATCTCCAGCATCTGA 59.565 34.615 0.00 0.00 32.44 3.27
2030 2518 6.627243 TCAAAATTCAAATCTCCAGCATCTG 58.373 36.000 0.00 0.00 0.00 2.90
2031 2519 6.627508 GCTCAAAATTCAAATCTCCAGCATCT 60.628 38.462 0.00 0.00 0.00 2.90
2032 2520 5.519206 GCTCAAAATTCAAATCTCCAGCATC 59.481 40.000 0.00 0.00 0.00 3.91
2033 2521 5.046878 TGCTCAAAATTCAAATCTCCAGCAT 60.047 36.000 0.00 0.00 0.00 3.79
2034 2522 4.281435 TGCTCAAAATTCAAATCTCCAGCA 59.719 37.500 0.00 0.00 0.00 4.41
2035 2523 4.813027 TGCTCAAAATTCAAATCTCCAGC 58.187 39.130 0.00 0.00 0.00 4.85
2036 2524 7.900782 ATTTGCTCAAAATTCAAATCTCCAG 57.099 32.000 0.00 0.00 36.10 3.86
2037 2525 7.173562 CCAATTTGCTCAAAATTCAAATCTCCA 59.826 33.333 0.00 0.00 44.88 3.86
2100 2596 0.249699 TGACGTGTCATGACCCACAC 60.250 55.000 22.85 13.58 39.70 3.82
2152 3025 4.970662 TTTAGGCTGTTGCAATCATCTC 57.029 40.909 0.59 0.00 41.91 2.75
2176 3169 9.877178 TCTCTTAATCAGGAGTTGTTTAGAATC 57.123 33.333 0.00 0.00 0.00 2.52
2183 3177 7.546250 TTCTCTCTCTTAATCAGGAGTTGTT 57.454 36.000 0.00 0.00 0.00 2.83
2185 3191 8.839310 TTTTTCTCTCTCTTAATCAGGAGTTG 57.161 34.615 0.00 0.00 0.00 3.16
2236 3243 1.625818 ACAACTCACAGGGGATCAGAC 59.374 52.381 0.00 0.00 0.00 3.51
2238 3245 2.430465 CAACAACTCACAGGGGATCAG 58.570 52.381 0.00 0.00 0.00 2.90
2241 3248 0.405585 CCCAACAACTCACAGGGGAT 59.594 55.000 0.00 0.00 37.80 3.85
2342 4293 3.243301 TGAGTAGTCGTTGTCAGAACCAC 60.243 47.826 0.00 0.00 0.00 4.16
2411 5138 0.098200 GCCACCGGATTTCGCTTTAC 59.902 55.000 9.46 0.00 37.59 2.01
2425 6408 0.853530 ATTTCCCTAGGATGGCCACC 59.146 55.000 8.16 12.35 36.29 4.61
2558 6727 5.053978 AGTTCTCACTTGTCAGGGAAAAT 57.946 39.130 0.00 0.00 29.39 1.82
2569 6738 2.866156 TGAAAGCGTGAGTTCTCACTTG 59.134 45.455 24.21 14.37 38.40 3.16
2810 7210 3.255379 GAGACCGATTGCGCCGAC 61.255 66.667 4.18 0.00 35.83 4.79
2912 7312 3.181774 GGCACGATGATGTACATAACGAC 59.818 47.826 24.75 18.26 39.56 4.34
2917 7317 5.478407 CCAATAGGCACGATGATGTACATA 58.522 41.667 8.71 0.00 39.56 2.29
2944 7344 4.702612 TGCGCCTTATAGAAATCAAACCAA 59.297 37.500 4.18 0.00 0.00 3.67
3043 7443 5.304357 TGCCTCTGTATCGAGATGGAAATTA 59.696 40.000 0.00 0.00 32.74 1.40
3148 7548 5.010012 GTGAAACAGGAGGACATGAACAATT 59.990 40.000 0.00 0.00 36.32 2.32
3311 7742 6.817641 CCTGCTTATATCTCCTCATTAGCTTG 59.182 42.308 0.00 0.00 0.00 4.01
3454 7886 2.037641 AGGGTGAAGAAAAAGGCAATGC 59.962 45.455 0.00 0.00 0.00 3.56
3529 7961 2.028658 AGATCTGTATAGCATGCCGTGG 60.029 50.000 15.66 0.23 0.00 4.94
3555 7993 5.999044 AGAATGTCAATTGTGGATCTAGCT 58.001 37.500 5.13 0.00 0.00 3.32
3556 7994 6.238593 GGAAGAATGTCAATTGTGGATCTAGC 60.239 42.308 5.13 2.96 0.00 3.42
3571 8009 4.210120 GTCTGCATACGATGGAAGAATGTC 59.790 45.833 0.00 0.00 0.00 3.06
3584 8030 1.144057 GTCCTGGGGTCTGCATACG 59.856 63.158 0.00 0.00 0.00 3.06
3655 8101 2.710377 ACCTTGAAGCACATATTCGCA 58.290 42.857 0.00 0.00 0.00 5.10
4057 8653 3.186047 CGCCGCGTAAGTTCCCAG 61.186 66.667 4.92 0.00 41.68 4.45
4137 8733 1.303643 CCAGTTCTGGCCTGGGAAC 60.304 63.158 20.89 20.89 44.77 3.62
4350 8946 4.039124 CCCAGGCACAAGTAAATCAAAACT 59.961 41.667 0.00 0.00 0.00 2.66
4353 8949 2.298729 GCCCAGGCACAAGTAAATCAAA 59.701 45.455 3.12 0.00 41.49 2.69
4356 8952 1.839424 AGCCCAGGCACAAGTAAATC 58.161 50.000 12.03 0.00 44.88 2.17
4518 9114 5.178067 CCACTTGCTCACAATTCCAATTTTC 59.822 40.000 0.00 0.00 34.61 2.29
4540 9136 5.447624 TTCGCTATTTACATCGATCTCCA 57.552 39.130 0.00 0.00 0.00 3.86
4541 9137 5.864474 ACATTCGCTATTTACATCGATCTCC 59.136 40.000 0.00 0.00 0.00 3.71
4628 9228 7.492344 ACACAAAGGTTGTCATTTTGAATCTTC 59.508 33.333 10.28 0.00 43.23 2.87
4635 9235 7.971168 TGTTACTACACAAAGGTTGTCATTTTG 59.029 33.333 0.00 0.00 43.23 2.44
4639 9239 5.238650 GCTGTTACTACACAAAGGTTGTCAT 59.761 40.000 0.00 0.00 43.23 3.06
4642 9242 3.881089 GGCTGTTACTACACAAAGGTTGT 59.119 43.478 0.00 0.00 46.75 3.32
4643 9243 4.134563 AGGCTGTTACTACACAAAGGTTG 58.865 43.478 0.00 0.00 0.00 3.77
4645 9245 5.556006 TTAGGCTGTTACTACACAAAGGT 57.444 39.130 0.00 0.00 0.00 3.50
4646 9246 6.228258 TCTTTAGGCTGTTACTACACAAAGG 58.772 40.000 0.00 0.00 0.00 3.11
4647 9247 7.225931 TGTTCTTTAGGCTGTTACTACACAAAG 59.774 37.037 0.00 0.00 0.00 2.77
4648 9248 7.049133 TGTTCTTTAGGCTGTTACTACACAAA 58.951 34.615 0.00 0.00 0.00 2.83
4649 9249 6.584488 TGTTCTTTAGGCTGTTACTACACAA 58.416 36.000 0.00 0.00 0.00 3.33
4650 9250 6.164417 TGTTCTTTAGGCTGTTACTACACA 57.836 37.500 0.00 0.00 0.00 3.72
4651 9251 6.221659 ACTGTTCTTTAGGCTGTTACTACAC 58.778 40.000 0.00 0.00 0.00 2.90
4652 9252 6.267014 AGACTGTTCTTTAGGCTGTTACTACA 59.733 38.462 0.00 0.00 30.67 2.74
4674 9274 6.206829 AGTGAAAACCTATTGCCACTAAAGAC 59.793 38.462 0.00 0.00 32.60 3.01
4710 9311 1.604604 TTTGCTAGCTGGGACAACAC 58.395 50.000 17.23 0.00 38.70 3.32
4756 9360 3.164268 ACATGCCACCTGCTTTTAATGA 58.836 40.909 0.00 0.00 42.00 2.57
4759 9363 4.148838 AGTTACATGCCACCTGCTTTTAA 58.851 39.130 0.00 0.00 42.00 1.52
4771 9375 2.061028 GCAAGTTGCAAGTTACATGCC 58.939 47.619 22.90 1.68 44.26 4.40
4787 9391 8.375465 CAGAAAGTTCAGTTAAAAACTTGCAAG 58.625 33.333 24.84 24.84 43.14 4.01
4807 9411 7.198390 ACATTGTGTGTGAGAAATTCAGAAAG 58.802 34.615 0.00 0.00 40.28 2.62
4844 9448 8.295288 AGAAAAGAATCTGCAGTCATAAAGTTG 58.705 33.333 14.67 0.00 0.00 3.16
4846 9450 7.992754 AGAAAAGAATCTGCAGTCATAAAGT 57.007 32.000 14.67 0.00 0.00 2.66
4860 9464 6.643770 GGAACCGGGTTTAAAAGAAAAGAATC 59.356 38.462 14.69 0.00 0.00 2.52
4867 9471 6.747125 GTTAATGGAACCGGGTTTAAAAGAA 58.253 36.000 14.69 2.32 31.20 2.52
4889 9505 2.158667 ACTCCGTGGTTTCATTCTGGTT 60.159 45.455 0.00 0.00 0.00 3.67
4904 9520 1.000955 CTGTTTGTCAGGCTACTCCGT 59.999 52.381 0.00 0.00 40.23 4.69
4905 9521 1.714794 CTGTTTGTCAGGCTACTCCG 58.285 55.000 0.00 0.00 40.23 4.63
4914 9530 3.734902 GCACCTTTGAACCTGTTTGTCAG 60.735 47.826 0.00 0.00 43.27 3.51
4915 9531 2.165437 GCACCTTTGAACCTGTTTGTCA 59.835 45.455 0.00 0.00 0.00 3.58
4916 9532 2.165437 TGCACCTTTGAACCTGTTTGTC 59.835 45.455 0.00 0.00 0.00 3.18
4917 9533 2.175202 TGCACCTTTGAACCTGTTTGT 58.825 42.857 0.00 0.00 0.00 2.83
4918 9534 2.957491 TGCACCTTTGAACCTGTTTG 57.043 45.000 0.00 0.00 0.00 2.93
4919 9535 3.971245 TTTGCACCTTTGAACCTGTTT 57.029 38.095 0.00 0.00 0.00 2.83
4920 9536 3.860641 CTTTTGCACCTTTGAACCTGTT 58.139 40.909 0.00 0.00 0.00 3.16
4921 9537 2.418609 GCTTTTGCACCTTTGAACCTGT 60.419 45.455 0.00 0.00 46.58 4.00
4922 9538 2.204237 GCTTTTGCACCTTTGAACCTG 58.796 47.619 0.00 0.00 46.58 4.00
4923 9539 2.602257 GCTTTTGCACCTTTGAACCT 57.398 45.000 0.00 0.00 46.58 3.50
4950 9566 6.992063 TGGCAACTGAGAGAATAAGAATTC 57.008 37.500 0.00 0.00 38.89 2.17
4956 9572 9.494271 GTCATATAATGGCAACTGAGAGAATAA 57.506 33.333 0.00 0.00 34.33 1.40
4958 9574 7.660617 CAGTCATATAATGGCAACTGAGAGAAT 59.339 37.037 7.31 0.00 37.34 2.40
4959 9575 6.988580 CAGTCATATAATGGCAACTGAGAGAA 59.011 38.462 7.31 0.00 37.34 2.87
4960 9576 6.324770 TCAGTCATATAATGGCAACTGAGAGA 59.675 38.462 10.91 0.76 36.99 3.10
4963 9579 7.558161 TTTCAGTCATATAATGGCAACTGAG 57.442 36.000 13.70 0.00 40.47 3.35
5008 9626 5.374921 AGTTGATCATTGCCTCTATCCTTG 58.625 41.667 0.00 0.00 0.00 3.61
5011 9629 5.931146 CAGTAGTTGATCATTGCCTCTATCC 59.069 44.000 0.00 0.00 0.00 2.59
5020 9638 5.063186 GTGTCAGAGCAGTAGTTGATCATTG 59.937 44.000 0.00 0.00 44.66 2.82
5023 9641 3.573967 TGTGTCAGAGCAGTAGTTGATCA 59.426 43.478 0.00 0.00 44.66 2.92
5025 9643 3.576118 ACTGTGTCAGAGCAGTAGTTGAT 59.424 43.478 5.91 0.00 43.30 2.57
5035 9653 2.924454 GCTAGTGTCACTGTGTCAGAGC 60.924 54.545 16.03 18.73 35.18 4.09
5039 9657 2.031870 ACTGCTAGTGTCACTGTGTCA 58.968 47.619 16.03 5.61 0.00 3.58
5040 9658 2.608261 GGACTGCTAGTGTCACTGTGTC 60.608 54.545 16.03 15.45 36.26 3.67
5041 9659 1.341531 GGACTGCTAGTGTCACTGTGT 59.658 52.381 16.03 8.43 36.26 3.72
5042 9660 1.341209 TGGACTGCTAGTGTCACTGTG 59.659 52.381 16.03 9.27 36.26 3.66
5043 9661 1.615883 CTGGACTGCTAGTGTCACTGT 59.384 52.381 16.03 4.55 36.26 3.55
5044 9662 1.889170 TCTGGACTGCTAGTGTCACTG 59.111 52.381 16.03 6.87 36.26 3.66
5045 9663 2.294449 TCTGGACTGCTAGTGTCACT 57.706 50.000 10.99 10.99 36.26 3.41
5046 9664 3.601443 AATCTGGACTGCTAGTGTCAC 57.399 47.619 16.05 0.00 36.26 3.67
5070 9688 2.496899 TCATTCAAGTCTTGGAGGGC 57.503 50.000 12.66 0.00 0.00 5.19
5079 9697 4.771590 TCAGCATGGTTTCATTCAAGTC 57.228 40.909 0.00 0.00 36.16 3.01
5081 9699 7.713750 AGATTATCAGCATGGTTTCATTCAAG 58.286 34.615 0.00 0.00 36.16 3.02
5082 9700 7.649533 AGATTATCAGCATGGTTTCATTCAA 57.350 32.000 0.00 0.00 36.16 2.69
5087 9705 8.985315 ATAAGAAGATTATCAGCATGGTTTCA 57.015 30.769 0.00 0.00 36.16 2.69
5090 9708 9.412460 TGAAATAAGAAGATTATCAGCATGGTT 57.588 29.630 0.00 0.00 36.16 3.67
5092 9710 8.013947 CGTGAAATAAGAAGATTATCAGCATGG 58.986 37.037 0.00 0.00 36.16 3.66
5094 9712 7.716998 ACCGTGAAATAAGAAGATTATCAGCAT 59.283 33.333 0.00 0.00 0.00 3.79
5095 9713 7.047891 ACCGTGAAATAAGAAGATTATCAGCA 58.952 34.615 0.00 0.00 0.00 4.41
5096 9714 7.484035 ACCGTGAAATAAGAAGATTATCAGC 57.516 36.000 0.00 0.00 0.00 4.26
5121 9771 1.212935 AGTTCTTGGCACTGGTCTGTT 59.787 47.619 0.00 0.00 0.00 3.16
5166 9818 8.691661 AGCCTAAAACTTCTTATTCTGTCAAA 57.308 30.769 0.00 0.00 0.00 2.69
5203 9855 6.844696 ATGTTTAGTAATGCGATGTGTAGG 57.155 37.500 0.00 0.00 0.00 3.18
5236 9888 4.417437 TGGTAAGAGGCTCAGAGTAAACT 58.583 43.478 18.26 0.00 0.00 2.66
5248 9900 3.429684 GCTAACTCTGTCTGGTAAGAGGC 60.430 52.174 4.83 0.00 43.54 4.70
5257 9909 1.517257 CGGCGGCTAACTCTGTCTG 60.517 63.158 7.61 0.00 0.00 3.51
5258 9910 2.711922 CCGGCGGCTAACTCTGTCT 61.712 63.158 15.42 0.00 0.00 3.41
5259 9911 2.202756 CCGGCGGCTAACTCTGTC 60.203 66.667 15.42 0.00 0.00 3.51
5260 9912 4.452733 GCCGGCGGCTAACTCTGT 62.453 66.667 41.44 0.00 46.69 3.41
5295 9947 3.557824 CGTTGCTTACGTCCCCAC 58.442 61.111 0.00 0.00 45.14 4.61
5303 9955 1.203313 GTGCGGTGTCGTTGCTTAC 59.797 57.895 0.00 0.00 38.89 2.34
5304 9956 1.957186 GGTGCGGTGTCGTTGCTTA 60.957 57.895 0.00 0.00 38.89 3.09
5305 9957 3.276846 GGTGCGGTGTCGTTGCTT 61.277 61.111 0.00 0.00 38.89 3.91
5306 9958 4.235762 AGGTGCGGTGTCGTTGCT 62.236 61.111 0.00 0.00 38.89 3.91
5307 9959 4.012895 CAGGTGCGGTGTCGTTGC 62.013 66.667 0.00 0.00 38.89 4.17
5308 9960 2.587753 ACAGGTGCGGTGTCGTTG 60.588 61.111 0.00 0.00 38.89 4.10
5309 9961 2.279918 GACAGGTGCGGTGTCGTT 60.280 61.111 0.00 0.00 35.31 3.85
5313 9965 2.203728 TAGGGACAGGTGCGGTGT 60.204 61.111 0.00 0.00 0.00 4.16
5314 9966 2.227089 GAGTAGGGACAGGTGCGGTG 62.227 65.000 0.00 0.00 0.00 4.94
5319 9971 1.668101 GCGAGGAGTAGGGACAGGTG 61.668 65.000 0.00 0.00 0.00 4.00
5367 10019 3.766691 GTAGCTCGGCCCGTGGAA 61.767 66.667 1.63 0.00 0.00 3.53
5389 10041 1.657804 ATTCTTTCAGTCCCCGACCT 58.342 50.000 0.00 0.00 32.18 3.85
5403 10055 3.245052 CCCTCCAGTCCAGTTCAATTCTT 60.245 47.826 0.00 0.00 0.00 2.52
5405 10057 2.305927 TCCCTCCAGTCCAGTTCAATTC 59.694 50.000 0.00 0.00 0.00 2.17
5418 10070 2.726351 GCCGTCCTTCTCCCTCCAG 61.726 68.421 0.00 0.00 0.00 3.86
5459 10111 4.419921 ACCGATCCCCCAAACCGC 62.420 66.667 0.00 0.00 0.00 5.68
5460 10112 2.437716 CACCGATCCCCCAAACCG 60.438 66.667 0.00 0.00 0.00 4.44
5461 10113 2.754254 GCACCGATCCCCCAAACC 60.754 66.667 0.00 0.00 0.00 3.27
5462 10114 2.046285 CAGCACCGATCCCCCAAAC 61.046 63.158 0.00 0.00 0.00 2.93
5463 10115 2.354729 CAGCACCGATCCCCCAAA 59.645 61.111 0.00 0.00 0.00 3.28
5464 10116 3.727258 CCAGCACCGATCCCCCAA 61.727 66.667 0.00 0.00 0.00 4.12
5465 10117 4.731853 TCCAGCACCGATCCCCCA 62.732 66.667 0.00 0.00 0.00 4.96
5466 10118 3.866582 CTCCAGCACCGATCCCCC 61.867 72.222 0.00 0.00 0.00 5.40
5467 10119 2.764128 TCTCCAGCACCGATCCCC 60.764 66.667 0.00 0.00 0.00 4.81
5468 10120 1.758514 TCTCTCCAGCACCGATCCC 60.759 63.158 0.00 0.00 0.00 3.85
5469 10121 1.439644 GTCTCTCCAGCACCGATCC 59.560 63.158 0.00 0.00 0.00 3.36
5470 10122 1.064946 CGTCTCTCCAGCACCGATC 59.935 63.158 0.00 0.00 0.00 3.69
5471 10123 1.378646 TCGTCTCTCCAGCACCGAT 60.379 57.895 0.00 0.00 0.00 4.18
5472 10124 2.033602 TCGTCTCTCCAGCACCGA 59.966 61.111 0.00 0.00 0.00 4.69
5530 10344 0.178975 AAGAATGGAACGGCCCAACA 60.179 50.000 0.00 0.00 40.04 3.33
5549 10363 4.039730 GCTATGATGGAGAGAAGGTAAGCA 59.960 45.833 0.00 0.00 0.00 3.91
5550 10364 4.039730 TGCTATGATGGAGAGAAGGTAAGC 59.960 45.833 0.00 0.00 0.00 3.09
5551 10365 5.798125 TGCTATGATGGAGAGAAGGTAAG 57.202 43.478 0.00 0.00 0.00 2.34
5554 10417 5.643421 AAATGCTATGATGGAGAGAAGGT 57.357 39.130 0.00 0.00 0.00 3.50
5556 10419 6.939132 ACAAAATGCTATGATGGAGAGAAG 57.061 37.500 0.00 0.00 0.00 2.85
5593 10459 4.202010 GCCGATTACAACATGCTATTGGTT 60.202 41.667 0.00 0.00 0.00 3.67
5595 10461 3.565482 AGCCGATTACAACATGCTATTGG 59.435 43.478 0.00 0.00 0.00 3.16
5608 10474 4.025015 TCTAAACTCACGAGCCGATTAC 57.975 45.455 1.50 0.00 0.00 1.89
5609 10475 4.669318 CTTCTAAACTCACGAGCCGATTA 58.331 43.478 1.50 0.00 0.00 1.75
5619 10485 3.306818 ACGTTCGAGCTTCTAAACTCAC 58.693 45.455 0.00 0.00 32.98 3.51
5621 10487 3.979495 TCAACGTTCGAGCTTCTAAACTC 59.021 43.478 0.00 0.00 0.00 3.01
5629 10495 0.667792 GAGCCTCAACGTTCGAGCTT 60.668 55.000 14.58 8.56 0.00 3.74
5634 10500 1.148310 ATTGTGAGCCTCAACGTTCG 58.852 50.000 0.00 0.00 0.00 3.95
5638 10504 2.474526 CGCTAAATTGTGAGCCTCAACG 60.475 50.000 0.00 0.00 35.13 4.10
5641 10507 2.760634 TCGCTAAATTGTGAGCCTCA 57.239 45.000 0.00 0.00 35.13 3.86
5682 10548 7.280356 AGGGAAAAGAGCTTAGCGATATTAAA 58.720 34.615 0.00 0.00 0.00 1.52
5685 10551 5.297569 AGGGAAAAGAGCTTAGCGATATT 57.702 39.130 0.00 0.00 0.00 1.28
5686 10552 4.965200 AGGGAAAAGAGCTTAGCGATAT 57.035 40.909 0.00 0.00 0.00 1.63
5687 10553 4.894114 ACTAGGGAAAAGAGCTTAGCGATA 59.106 41.667 0.00 0.00 0.00 2.92
5688 10554 3.707102 ACTAGGGAAAAGAGCTTAGCGAT 59.293 43.478 0.00 0.00 0.00 4.58
5689 10555 3.097614 ACTAGGGAAAAGAGCTTAGCGA 58.902 45.455 0.00 0.00 0.00 4.93
5690 10556 3.528597 ACTAGGGAAAAGAGCTTAGCG 57.471 47.619 0.00 0.00 0.00 4.26
5691 10557 4.833390 TCAACTAGGGAAAAGAGCTTAGC 58.167 43.478 0.00 0.00 0.00 3.09
5692 10558 7.929941 AATTCAACTAGGGAAAAGAGCTTAG 57.070 36.000 3.60 0.00 0.00 2.18
5693 10559 8.603304 AGTAATTCAACTAGGGAAAAGAGCTTA 58.397 33.333 3.60 0.00 0.00 3.09
5695 10561 7.021998 AGTAATTCAACTAGGGAAAAGAGCT 57.978 36.000 3.60 0.00 0.00 4.09
5696 10562 6.879458 TGAGTAATTCAACTAGGGAAAAGAGC 59.121 38.462 3.60 0.00 31.34 4.09
5697 10563 8.848474 TTGAGTAATTCAACTAGGGAAAAGAG 57.152 34.615 3.60 0.00 40.82 2.85
5698 10564 8.437575 ACTTGAGTAATTCAACTAGGGAAAAGA 58.562 33.333 3.60 0.00 40.82 2.52
5699 10565 8.507249 CACTTGAGTAATTCAACTAGGGAAAAG 58.493 37.037 3.60 4.69 40.82 2.27
5703 10570 6.042781 ACACACTTGAGTAATTCAACTAGGGA 59.957 38.462 0.00 0.00 40.82 4.20
5708 10575 8.677148 ATAACACACACTTGAGTAATTCAACT 57.323 30.769 0.00 0.00 40.82 3.16
5788 10658 8.860088 GTCACATAAGCAAATAAAGGGGAATAT 58.140 33.333 0.00 0.00 0.00 1.28
5793 10663 4.956075 AGGTCACATAAGCAAATAAAGGGG 59.044 41.667 0.00 0.00 0.00 4.79
5796 10667 7.320443 TGCTAGGTCACATAAGCAAATAAAG 57.680 36.000 0.00 0.00 41.74 1.85
5844 10718 6.952935 ATAAGAAAAGTACTCAAGTCGCAG 57.047 37.500 0.00 0.00 0.00 5.18
5885 10759 4.507388 CACAATGGCGAGTCAAACAAAATT 59.493 37.500 0.00 0.00 0.00 1.82
5886 10760 4.050553 CACAATGGCGAGTCAAACAAAAT 58.949 39.130 0.00 0.00 0.00 1.82
5895 10769 3.313526 AGCATAATTCACAATGGCGAGTC 59.686 43.478 0.00 0.00 0.00 3.36
5932 10806 6.206634 GTCCATTTCACAACTATCACAGGAAA 59.793 38.462 0.00 0.00 0.00 3.13
5933 10807 5.705441 GTCCATTTCACAACTATCACAGGAA 59.295 40.000 0.00 0.00 0.00 3.36
5934 10808 5.013079 AGTCCATTTCACAACTATCACAGGA 59.987 40.000 0.00 0.00 0.00 3.86
5935 10809 5.122869 CAGTCCATTTCACAACTATCACAGG 59.877 44.000 0.00 0.00 0.00 4.00
5936 10810 5.391310 GCAGTCCATTTCACAACTATCACAG 60.391 44.000 0.00 0.00 0.00 3.66
5980 10854 2.027192 ACATCCTAAATGCGCCGGATAT 60.027 45.455 5.05 0.00 34.63 1.63
5984 10858 0.813610 TCACATCCTAAATGCGCCGG 60.814 55.000 4.18 0.00 0.00 6.13
6022 10896 3.733224 GTGATTGTAGCGAGATAGCACAG 59.267 47.826 0.00 0.00 40.15 3.66
6029 10903 0.459899 TGGCGTGATTGTAGCGAGAT 59.540 50.000 0.00 0.00 0.00 2.75
6045 10919 0.610232 AGCCCTCACAGAACATTGGC 60.610 55.000 0.00 0.00 37.68 4.52
6050 10924 2.615986 TACCTAGCCCTCACAGAACA 57.384 50.000 0.00 0.00 0.00 3.18
6055 10929 2.561209 TGGAATACCTAGCCCTCACA 57.439 50.000 0.00 0.00 37.04 3.58
6124 10998 5.345702 TCCGAGTGACTATAAAAACCATCG 58.654 41.667 0.00 0.00 0.00 3.84
6148 11022 8.687824 AAATTTATGATCACCAATCGAACAAC 57.312 30.769 0.00 0.00 37.17 3.32
6221 11095 6.568869 TGGAACACATTTTTAGTTCTTGTGG 58.431 36.000 6.35 0.00 41.45 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.