Multiple sequence alignment - TraesCS7D01G048600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G048600 chr7D 100.000 5469 0 0 1 5469 25041682 25036214 0.000000e+00 10100
1 TraesCS7D01G048600 chr7D 79.276 608 93 25 1 588 25048627 25048033 1.430000e-105 394
2 TraesCS7D01G048600 chr7D 92.486 173 11 2 5248 5420 573390769 573390599 4.230000e-61 246
3 TraesCS7D01G048600 chr7A 93.309 5291 256 39 1 5248 25927101 25921866 0.000000e+00 7720
4 TraesCS7D01G048600 chr4A 94.347 4051 209 13 826 4869 708566487 708570524 0.000000e+00 6194
5 TraesCS7D01G048600 chr4A 92.586 580 21 9 1 560 708563410 708563987 0.000000e+00 813
6 TraesCS7D01G048600 chr4A 81.422 619 77 21 1 588 708556612 708557223 6.410000e-129 472
7 TraesCS7D01G048600 chr4A 91.241 274 21 3 4978 5249 708571345 708571617 2.410000e-98 370
8 TraesCS7D01G048600 chr4A 85.603 257 15 4 557 791 708566226 708566482 3.270000e-62 250
9 TraesCS7D01G048600 chr4A 88.034 117 8 3 4867 4983 708570587 708570697 3.440000e-27 134
10 TraesCS7D01G048600 chr1A 79.289 3433 632 52 1037 4433 5871451 5874840 0.000000e+00 2327
11 TraesCS7D01G048600 chr3D 98.266 173 3 0 5248 5420 4973541 4973369 2.480000e-78 303
12 TraesCS7D01G048600 chr3D 97.159 176 5 0 5249 5424 551629747 551629572 1.150000e-76 298
13 TraesCS7D01G048600 chr1D 97.093 172 5 0 5249 5420 305224789 305224618 1.930000e-74 291
14 TraesCS7D01G048600 chr6B 94.828 174 8 1 5248 5420 642913265 642913092 2.510000e-68 270
15 TraesCS7D01G048600 chr6B 94.578 166 8 1 5249 5414 473090373 473090537 7.030000e-64 255
16 TraesCS7D01G048600 chr4B 93.750 176 11 0 5245 5420 343726138 343725963 1.170000e-66 265
17 TraesCS7D01G048600 chr4B 90.698 172 15 1 5249 5420 666754002 666754172 1.530000e-55 228
18 TraesCS7D01G048600 chr3B 94.545 165 9 0 5249 5413 34055243 34055407 7.030000e-64 255


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G048600 chr7D 25036214 25041682 5468 True 10100.0 10100 100.0000 1 5469 1 chr7D.!!$R1 5468
1 TraesCS7D01G048600 chr7D 25048033 25048627 594 True 394.0 394 79.2760 1 588 1 chr7D.!!$R2 587
2 TraesCS7D01G048600 chr7A 25921866 25927101 5235 True 7720.0 7720 93.3090 1 5248 1 chr7A.!!$R1 5247
3 TraesCS7D01G048600 chr4A 708563410 708571617 8207 False 1552.2 6194 90.3622 1 5249 5 chr4A.!!$F2 5248
4 TraesCS7D01G048600 chr4A 708556612 708557223 611 False 472.0 472 81.4220 1 588 1 chr4A.!!$F1 587
5 TraesCS7D01G048600 chr1A 5871451 5874840 3389 False 2327.0 2327 79.2890 1037 4433 1 chr1A.!!$F1 3396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 569 1.549265 GGGAGGTTAAACCAACTGGGG 60.549 57.143 0.00 0.00 41.95 4.96 F
1050 3404 1.327303 TGCGGCTTCTTTTCACCATT 58.673 45.000 0.00 0.00 0.00 3.16 F
1495 3852 1.786937 TGAGATCCCTCAAGCTCTCC 58.213 55.000 0.00 0.00 45.74 3.71 F
2500 4857 0.178068 TAATTCACTCTCAGGGCGCC 59.822 55.000 21.18 21.18 0.00 6.53 F
2878 5235 1.066858 GTGAGATTCCTTCCGCACTCA 60.067 52.381 0.00 0.00 31.11 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 3852 1.151668 CGGAGAAGCAAACACTCAGG 58.848 55.000 0.00 0.00 33.00 3.86 R
2064 4421 2.906389 TGGAAGAGTGTAGCCAATGTCT 59.094 45.455 0.00 0.00 0.00 3.41 R
2894 5251 3.027412 TCCTCCAAAGAGAGAGATTCCG 58.973 50.000 0.00 0.00 43.39 4.30 R
4150 6524 1.626321 TCTGTTGGATGCTTTCCCGTA 59.374 47.619 4.13 0.00 44.77 4.02 R
4857 7241 0.378610 TGATCTAGCAGAGTCACGCG 59.621 55.000 3.53 3.53 0.00 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.492673 TCAAAGTCCAAGTTAGTGCATTATAG 57.507 34.615 0.00 0.00 0.00 1.31
351 422 6.815142 ACGGAAATGTTGTTAGGTGATACTAC 59.185 38.462 0.00 0.00 0.00 2.73
425 507 5.734855 ATGGAATTGGTATCGTCGAAAAG 57.265 39.130 0.00 0.00 0.00 2.27
426 508 3.936453 TGGAATTGGTATCGTCGAAAAGG 59.064 43.478 0.00 0.00 0.00 3.11
436 518 5.587033 ATCGTCGAAAAGGTTACAAACTC 57.413 39.130 0.00 0.00 0.00 3.01
450 534 9.588096 AGGTTACAAACTCCAGAAATAATTCTT 57.412 29.630 0.00 0.00 43.43 2.52
466 550 8.671384 AATAATTCTTCAAATGCATTCATGGG 57.329 30.769 13.38 5.70 32.23 4.00
485 569 1.549265 GGGAGGTTAAACCAACTGGGG 60.549 57.143 0.00 0.00 41.95 4.96
512 597 5.234972 GCCCTTTTTCTTTTGACACAGAATG 59.765 40.000 0.00 0.00 46.00 2.67
627 2971 1.908299 CCTCTTGTTGGTTGCCCCC 60.908 63.158 0.00 0.00 0.00 5.40
661 3005 1.595357 CTGTGTCGGTCTAACCCCC 59.405 63.158 0.00 0.00 33.75 5.40
937 3291 2.564947 AGTACATCTAGCTAGGCATGGC 59.435 50.000 20.58 12.14 0.00 4.40
996 3350 4.120792 TCATTCAGCACACAAGCAAAAA 57.879 36.364 0.00 0.00 36.85 1.94
1050 3404 1.327303 TGCGGCTTCTTTTCACCATT 58.673 45.000 0.00 0.00 0.00 3.16
1074 3428 6.917208 ATTCCTTTCCTAATCCTTCTTCCT 57.083 37.500 0.00 0.00 0.00 3.36
1495 3852 1.786937 TGAGATCCCTCAAGCTCTCC 58.213 55.000 0.00 0.00 45.74 3.71
1538 3895 4.026310 GCAAATTGTTCTCAGCAACAACAG 60.026 41.667 2.52 0.00 46.45 3.16
1792 4149 3.416156 CCTCCTTTCCTTCAAACCTCTG 58.584 50.000 0.00 0.00 0.00 3.35
1902 4259 5.450412 CCTTCAGCTTGCTCAAAACAACTTA 60.450 40.000 0.00 0.00 0.00 2.24
1904 4261 3.725740 CAGCTTGCTCAAAACAACTTACG 59.274 43.478 0.00 0.00 0.00 3.18
2064 4421 4.098914 ACTTGTTGGTAGAATTCCTGCA 57.901 40.909 0.65 0.00 0.00 4.41
2205 4562 6.749118 GTCAAAATTCACTCACTGGCATTATC 59.251 38.462 0.00 0.00 0.00 1.75
2288 4645 6.627087 ATCTGGAGATTGGACTTTCTTGTA 57.373 37.500 0.00 0.00 0.00 2.41
2500 4857 0.178068 TAATTCACTCTCAGGGCGCC 59.822 55.000 21.18 21.18 0.00 6.53
2565 4922 5.140454 AGCTTATCCCACAACAAACTTTCT 58.860 37.500 0.00 0.00 0.00 2.52
2664 5021 2.314071 TACCTCCGAGTTTGGAAGGA 57.686 50.000 9.54 0.00 37.64 3.36
2683 5040 8.043710 TGGAAGGATGTAAAAATTTGTTGTTGT 58.956 29.630 0.00 0.00 0.00 3.32
2781 5138 7.396339 GGTTTGGATCTTTCCTATAACCAACTT 59.604 37.037 14.08 0.00 42.25 2.66
2878 5235 1.066858 GTGAGATTCCTTCCGCACTCA 60.067 52.381 0.00 0.00 31.11 3.41
2889 5246 2.758089 CGCACTCAGCCAATGCCTC 61.758 63.158 0.00 0.00 41.38 4.70
2894 5251 1.101331 CTCAGCCAATGCCTCCTTTC 58.899 55.000 0.00 0.00 38.69 2.62
3209 5566 3.243535 GCTTCCAAAAGGAAGAACACTGG 60.244 47.826 24.32 0.85 45.73 4.00
3342 5699 2.420687 CCAGTCCTTCAGGGAGCATAAC 60.421 54.545 0.00 0.00 46.10 1.89
3437 5794 1.208535 TGGAGTGGTATACAAAGGCCG 59.791 52.381 5.01 0.00 0.00 6.13
3494 5851 1.615392 GCTTGACCAACTTGGAGCATT 59.385 47.619 15.14 0.00 40.96 3.56
3509 5866 5.305585 TGGAGCATTAAAGAGTTTCTTCGT 58.694 37.500 0.00 0.00 35.27 3.85
3537 5894 4.754618 TGTGATGCACTAAGAAACATTCGT 59.245 37.500 0.00 0.00 35.11 3.85
4045 6404 3.325870 TCACGCCTCAACTAAGTGAATG 58.674 45.455 0.00 0.00 38.66 2.67
4046 6420 3.006430 TCACGCCTCAACTAAGTGAATGA 59.994 43.478 0.00 0.00 38.66 2.57
4049 6423 5.003804 ACGCCTCAACTAAGTGAATGATTT 58.996 37.500 0.00 0.00 0.00 2.17
4244 6618 5.467035 TTCACAGGAAATTGGTGAAATCC 57.533 39.130 10.83 0.00 45.51 3.01
4261 6635 7.417456 GGTGAAATCCTAGAACCAAGTTTTGTT 60.417 37.037 0.00 0.00 0.00 2.83
4305 6679 7.838193 AGGAGAAAATCTTCTAATGGCTGAAAT 59.162 33.333 0.00 0.00 42.19 2.17
4324 6698 5.529430 TGAAATAAAATGGTGTGTCACTCGT 59.471 36.000 4.27 0.00 34.40 4.18
4509 6883 6.806751 TCAGTTAGAAGTAGCATGGTCATAC 58.193 40.000 0.00 0.00 0.00 2.39
4513 6887 5.683876 AGAAGTAGCATGGTCATACACTT 57.316 39.130 9.22 9.22 0.00 3.16
4620 6998 7.495901 ACTAACTGAGAACATATGTGATCCAG 58.504 38.462 9.63 15.45 34.59 3.86
4628 7006 4.592942 ACATATGTGATCCAGCAACAGTT 58.407 39.130 7.78 0.00 0.00 3.16
4643 7022 1.098050 CAGTTTGCATGGCTCTACCC 58.902 55.000 0.00 0.00 37.83 3.69
4650 7029 4.066578 TGCATGGCTCTACCCTATCTAT 57.933 45.455 0.00 0.00 37.83 1.98
4651 7030 4.429505 TGCATGGCTCTACCCTATCTATT 58.570 43.478 0.00 0.00 37.83 1.73
4810 7194 1.472480 GGTAATGTTTGGCACTGCGAT 59.528 47.619 0.00 0.00 0.00 4.58
4815 7199 0.527565 GTTTGGCACTGCGATGGATT 59.472 50.000 0.00 0.00 0.00 3.01
4845 7229 2.757077 GCAGTAGCAACAGGGGGT 59.243 61.111 0.00 0.00 41.58 4.95
4857 7241 0.318120 CAGGGGGTTCACACATTTGC 59.682 55.000 0.00 0.00 0.00 3.68
4880 7329 2.159503 CGTGACTCTGCTAGATCAACGT 60.160 50.000 0.00 0.00 0.00 3.99
4883 7332 3.375610 TGACTCTGCTAGATCAACGTCTC 59.624 47.826 0.00 0.00 0.00 3.36
4907 7356 1.292992 GTTTGTCCTATTACCGGCCG 58.707 55.000 21.04 21.04 0.00 6.13
4998 8100 6.126883 CCTTCCAACCCTCACTACATACATTA 60.127 42.308 0.00 0.00 0.00 1.90
5013 8116 7.921041 ACATACATTATCTTCTCCTCTTCCA 57.079 36.000 0.00 0.00 0.00 3.53
5037 8140 7.041167 CCATTTTGATTTCTTTTTCCTTCCACC 60.041 37.037 0.00 0.00 0.00 4.61
5052 8155 5.073965 TCCTTCCACCTGTAGTTTTTACCAT 59.926 40.000 0.00 0.00 0.00 3.55
5084 8187 5.052895 CGTTGAAAACCACACACGTTTTATC 60.053 40.000 0.00 0.00 46.28 1.75
5123 8226 8.641498 AAATCATGTCTTCTTTGGTAAGTCAT 57.359 30.769 0.00 0.00 34.47 3.06
5139 8242 8.154203 TGGTAAGTCATTAAGTGTTGATTCTCA 58.846 33.333 0.00 0.00 0.00 3.27
5143 8246 4.093408 TCATTAAGTGTTGATTCTCAGCGC 59.907 41.667 0.00 0.00 38.20 5.92
5154 8257 1.138247 CTCAGCGCTTCAATTGGCC 59.862 57.895 7.50 0.00 0.00 5.36
5198 8302 4.370620 GTAATCACGATGATTGCGTACC 57.629 45.455 17.82 2.50 45.77 3.34
5226 8330 2.435372 ATATCCCCGTTGCAACATGT 57.565 45.000 28.01 10.30 0.00 3.21
5248 8352 5.010213 TGTGTCCAATTAGCTTGTTTTACCC 59.990 40.000 0.00 0.00 32.61 3.69
5249 8353 5.010213 GTGTCCAATTAGCTTGTTTTACCCA 59.990 40.000 0.00 0.00 32.61 4.51
5250 8354 5.010213 TGTCCAATTAGCTTGTTTTACCCAC 59.990 40.000 0.00 0.00 32.61 4.61
5251 8355 5.243060 GTCCAATTAGCTTGTTTTACCCACT 59.757 40.000 0.00 0.00 32.61 4.00
5252 8356 5.242838 TCCAATTAGCTTGTTTTACCCACTG 59.757 40.000 0.00 0.00 32.61 3.66
5253 8357 5.242838 CCAATTAGCTTGTTTTACCCACTGA 59.757 40.000 0.00 0.00 32.61 3.41
5254 8358 6.239176 CCAATTAGCTTGTTTTACCCACTGAA 60.239 38.462 0.00 0.00 32.61 3.02
5255 8359 6.969993 ATTAGCTTGTTTTACCCACTGAAA 57.030 33.333 0.00 0.00 0.00 2.69
5256 8360 6.777213 TTAGCTTGTTTTACCCACTGAAAA 57.223 33.333 0.00 0.00 0.00 2.29
5257 8361 5.669164 AGCTTGTTTTACCCACTGAAAAA 57.331 34.783 0.00 0.00 0.00 1.94
5285 8389 1.582502 CGCTATAACGCCGCTAATAGC 59.417 52.381 13.04 13.04 42.10 2.97
5286 8390 2.602878 GCTATAACGCCGCTAATAGCA 58.397 47.619 13.15 0.00 43.98 3.49
5287 8391 2.344741 GCTATAACGCCGCTAATAGCAC 59.655 50.000 13.15 2.74 43.98 4.40
5288 8392 1.415374 ATAACGCCGCTAATAGCACG 58.585 50.000 18.94 18.94 42.58 5.34
5289 8393 1.210545 TAACGCCGCTAATAGCACGC 61.211 55.000 20.02 15.33 42.58 5.34
5290 8394 2.658593 CGCCGCTAATAGCACGCT 60.659 61.111 13.15 0.00 42.58 5.07
5291 8395 1.371267 CGCCGCTAATAGCACGCTA 60.371 57.895 13.15 0.39 42.58 4.26
5292 8396 0.732880 CGCCGCTAATAGCACGCTAT 60.733 55.000 13.15 5.72 42.58 2.97
5293 8397 1.466866 CGCCGCTAATAGCACGCTATA 60.467 52.381 13.15 1.16 42.58 1.31
5294 8398 2.186076 GCCGCTAATAGCACGCTATAG 58.814 52.381 13.15 10.32 42.58 1.31
5295 8399 2.186076 CCGCTAATAGCACGCTATAGC 58.814 52.381 15.09 15.09 42.58 2.97
5296 8400 2.415491 CCGCTAATAGCACGCTATAGCA 60.415 50.000 23.99 4.83 42.58 3.49
5297 8401 3.439293 CGCTAATAGCACGCTATAGCAT 58.561 45.455 23.99 6.50 42.58 3.79
5298 8402 4.497507 CCGCTAATAGCACGCTATAGCATA 60.498 45.833 23.99 11.14 42.58 3.14
5299 8403 5.215903 CGCTAATAGCACGCTATAGCATAT 58.784 41.667 23.99 12.75 42.58 1.78
5300 8404 6.371389 CGCTAATAGCACGCTATAGCATATA 58.629 40.000 23.99 11.13 42.58 0.86
5301 8405 6.521477 CGCTAATAGCACGCTATAGCATATAG 59.479 42.308 23.99 14.95 42.58 1.31
5302 8406 7.571428 CGCTAATAGCACGCTATAGCATATAGA 60.571 40.741 23.99 5.24 42.58 1.98
5303 8407 8.076781 GCTAATAGCACGCTATAGCATATAGAA 58.923 37.037 23.99 3.88 41.89 2.10
5304 8408 9.952188 CTAATAGCACGCTATAGCATATAGAAA 57.048 33.333 23.99 3.44 42.21 2.52
5306 8410 9.823647 AATAGCACGCTATAGCATATAGAAAAT 57.176 29.630 23.99 3.35 42.21 1.82
5307 8411 9.823647 ATAGCACGCTATAGCATATAGAAAATT 57.176 29.630 23.99 0.29 42.21 1.82
5308 8412 7.968246 AGCACGCTATAGCATATAGAAAATTG 58.032 34.615 23.99 5.79 42.21 2.32
5309 8413 7.604164 AGCACGCTATAGCATATAGAAAATTGT 59.396 33.333 23.99 6.41 42.21 2.71
5310 8414 7.900352 GCACGCTATAGCATATAGAAAATTGTC 59.100 37.037 23.99 0.00 42.21 3.18
5311 8415 9.144747 CACGCTATAGCATATAGAAAATTGTCT 57.855 33.333 23.99 3.06 42.21 3.41
5312 8416 9.360093 ACGCTATAGCATATAGAAAATTGTCTC 57.640 33.333 23.99 0.00 42.21 3.36
5313 8417 8.527488 CGCTATAGCATATAGAAAATTGTCTCG 58.473 37.037 23.99 0.00 42.21 4.04
5314 8418 8.324567 GCTATAGCATATAGAAAATTGTCTCGC 58.675 37.037 20.01 1.60 41.59 5.03
5315 8419 9.579768 CTATAGCATATAGAAAATTGTCTCGCT 57.420 33.333 0.00 8.84 0.00 4.93
5317 8421 9.929180 ATAGCATATAGAAAATTGTCTCGCTAA 57.071 29.630 16.65 0.00 31.08 3.09
5318 8422 8.662781 AGCATATAGAAAATTGTCTCGCTAAA 57.337 30.769 0.00 0.00 0.00 1.85
5319 8423 9.277783 AGCATATAGAAAATTGTCTCGCTAAAT 57.722 29.630 0.00 0.00 0.00 1.40
5330 8434 9.507280 AATTGTCTCGCTAAATAAATCAATGTG 57.493 29.630 0.00 0.00 0.00 3.21
5331 8435 6.486248 TGTCTCGCTAAATAAATCAATGTGC 58.514 36.000 0.00 0.00 0.00 4.57
5332 8436 6.093357 TGTCTCGCTAAATAAATCAATGTGCA 59.907 34.615 0.00 0.00 0.00 4.57
5333 8437 6.966632 GTCTCGCTAAATAAATCAATGTGCAA 59.033 34.615 0.00 0.00 0.00 4.08
5334 8438 7.645340 GTCTCGCTAAATAAATCAATGTGCAAT 59.355 33.333 0.00 0.00 0.00 3.56
5335 8439 7.644945 TCTCGCTAAATAAATCAATGTGCAATG 59.355 33.333 0.00 0.00 0.00 2.82
5336 8440 6.198778 TCGCTAAATAAATCAATGTGCAATGC 59.801 34.615 0.00 0.00 0.00 3.56
5337 8441 6.562640 CGCTAAATAAATCAATGTGCAATGCC 60.563 38.462 1.53 0.00 0.00 4.40
5338 8442 6.480981 GCTAAATAAATCAATGTGCAATGCCT 59.519 34.615 1.53 0.00 0.00 4.75
5339 8443 6.913873 AAATAAATCAATGTGCAATGCCTC 57.086 33.333 1.53 0.00 0.00 4.70
5340 8444 2.572191 AATCAATGTGCAATGCCTCG 57.428 45.000 1.53 0.00 0.00 4.63
5341 8445 0.101759 ATCAATGTGCAATGCCTCGC 59.898 50.000 1.53 0.00 0.00 5.03
5342 8446 0.961857 TCAATGTGCAATGCCTCGCT 60.962 50.000 1.53 0.00 0.00 4.93
5343 8447 0.734309 CAATGTGCAATGCCTCGCTA 59.266 50.000 1.53 0.00 0.00 4.26
5344 8448 1.132834 CAATGTGCAATGCCTCGCTAA 59.867 47.619 1.53 0.00 0.00 3.09
5345 8449 1.683943 ATGTGCAATGCCTCGCTAAT 58.316 45.000 1.53 0.00 0.00 1.73
5346 8450 2.323968 TGTGCAATGCCTCGCTAATA 57.676 45.000 1.53 0.00 0.00 0.98
5347 8451 2.212652 TGTGCAATGCCTCGCTAATAG 58.787 47.619 1.53 0.00 0.00 1.73
5348 8452 1.069636 GTGCAATGCCTCGCTAATAGC 60.070 52.381 1.53 1.41 38.02 2.97
5349 8453 1.229428 GCAATGCCTCGCTAATAGCA 58.771 50.000 13.15 0.00 42.58 3.49
5350 8454 1.069636 GCAATGCCTCGCTAATAGCAC 60.070 52.381 13.15 0.00 42.58 4.40
5351 8455 1.193203 CAATGCCTCGCTAATAGCACG 59.807 52.381 13.15 2.14 42.58 5.34
5352 8456 0.946221 ATGCCTCGCTAATAGCACGC 60.946 55.000 13.15 10.17 42.58 5.34
5353 8457 1.300233 GCCTCGCTAATAGCACGCT 60.300 57.895 13.15 0.00 42.58 5.07
5354 8458 0.039437 GCCTCGCTAATAGCACGCTA 60.039 55.000 13.15 0.39 42.58 4.26
5355 8459 1.402984 GCCTCGCTAATAGCACGCTAT 60.403 52.381 13.15 5.72 42.58 2.97
5356 8460 2.159421 GCCTCGCTAATAGCACGCTATA 60.159 50.000 13.15 1.16 42.58 1.31
5357 8461 3.686128 CCTCGCTAATAGCACGCTATAG 58.314 50.000 13.15 10.32 42.58 1.31
5358 8462 3.102276 CTCGCTAATAGCACGCTATAGC 58.898 50.000 15.09 15.09 42.58 2.97
5359 8463 2.486592 TCGCTAATAGCACGCTATAGCA 59.513 45.455 23.99 4.83 42.58 3.49
5360 8464 2.594654 CGCTAATAGCACGCTATAGCAC 59.405 50.000 23.99 12.65 42.58 4.40
5361 8465 2.594654 GCTAATAGCACGCTATAGCACG 59.405 50.000 23.99 14.72 41.89 5.34
5362 8466 1.419374 AATAGCACGCTATAGCACGC 58.581 50.000 23.99 22.83 42.21 5.34
5363 8467 0.598562 ATAGCACGCTATAGCACGCT 59.401 50.000 30.02 30.02 45.99 5.07
5364 8468 1.232119 TAGCACGCTATAGCACGCTA 58.768 50.000 28.42 28.42 43.56 4.26
5365 8469 0.384309 AGCACGCTATAGCACGCTAA 59.616 50.000 27.72 0.00 43.56 3.09
5366 8470 1.000163 AGCACGCTATAGCACGCTAAT 60.000 47.619 27.72 11.41 43.56 1.73
5367 8471 2.228103 AGCACGCTATAGCACGCTAATA 59.772 45.455 27.72 0.00 43.56 0.98
5368 8472 2.594654 GCACGCTATAGCACGCTAATAG 59.405 50.000 23.99 7.18 42.21 1.73
5369 8473 2.594654 CACGCTATAGCACGCTAATAGC 59.405 50.000 23.99 19.62 42.21 2.97
5370 8474 2.228103 ACGCTATAGCACGCTAATAGCA 59.772 45.455 23.99 0.00 40.58 3.49
5371 8475 3.119459 ACGCTATAGCACGCTAATAGCAT 60.119 43.478 23.99 15.58 40.58 3.79
5372 8476 4.095932 ACGCTATAGCACGCTAATAGCATA 59.904 41.667 23.99 1.56 40.58 3.14
5373 8477 5.215903 CGCTATAGCACGCTAATAGCATAT 58.784 41.667 23.99 7.17 40.58 1.78
5374 8478 5.687730 CGCTATAGCACGCTAATAGCATATT 59.312 40.000 23.99 0.00 40.58 1.28
5375 8479 6.199154 CGCTATAGCACGCTAATAGCATATTT 59.801 38.462 23.99 0.00 40.58 1.40
5376 8480 7.254117 CGCTATAGCACGCTAATAGCATATTTT 60.254 37.037 23.99 0.00 40.58 1.82
5377 8481 8.058915 GCTATAGCACGCTAATAGCATATTTTC 58.941 37.037 20.01 0.00 40.38 2.29
5378 8482 7.905604 ATAGCACGCTAATAGCATATTTTCA 57.094 32.000 13.15 0.00 42.58 2.69
5379 8483 6.233430 AGCACGCTAATAGCATATTTTCAG 57.767 37.500 13.15 0.00 42.58 3.02
5380 8484 5.180117 AGCACGCTAATAGCATATTTTCAGG 59.820 40.000 13.15 0.00 42.58 3.86
5381 8485 5.617751 GCACGCTAATAGCATATTTTCAGGG 60.618 44.000 13.15 0.00 42.58 4.45
5382 8486 5.003804 ACGCTAATAGCATATTTTCAGGGG 58.996 41.667 13.15 0.00 42.58 4.79
5383 8487 4.142600 CGCTAATAGCATATTTTCAGGGGC 60.143 45.833 13.15 0.00 42.58 5.80
5384 8488 4.158579 GCTAATAGCATATTTTCAGGGGCC 59.841 45.833 7.49 0.00 41.89 5.80
5385 8489 3.901570 ATAGCATATTTTCAGGGGCCA 57.098 42.857 4.39 0.00 0.00 5.36
5386 8490 1.780503 AGCATATTTTCAGGGGCCAC 58.219 50.000 4.39 0.00 0.00 5.01
5387 8491 0.385390 GCATATTTTCAGGGGCCACG 59.615 55.000 4.39 0.00 0.00 4.94
5388 8492 0.385390 CATATTTTCAGGGGCCACGC 59.615 55.000 4.39 0.00 0.00 5.34
5389 8493 0.258774 ATATTTTCAGGGGCCACGCT 59.741 50.000 4.39 0.00 41.05 5.07
5390 8494 0.913205 TATTTTCAGGGGCCACGCTA 59.087 50.000 4.39 0.00 37.87 4.26
5391 8495 0.258774 ATTTTCAGGGGCCACGCTAT 59.741 50.000 4.39 0.00 37.87 2.97
5392 8496 0.039035 TTTTCAGGGGCCACGCTATT 59.961 50.000 4.39 0.00 37.87 1.73
5393 8497 0.039035 TTTCAGGGGCCACGCTATTT 59.961 50.000 4.39 0.00 37.87 1.40
5394 8498 0.039035 TTCAGGGGCCACGCTATTTT 59.961 50.000 4.39 0.00 37.87 1.82
5395 8499 0.393808 TCAGGGGCCACGCTATTTTC 60.394 55.000 4.39 0.00 37.87 2.29
5396 8500 0.394352 CAGGGGCCACGCTATTTTCT 60.394 55.000 4.39 0.00 37.87 2.52
5397 8501 0.394352 AGGGGCCACGCTATTTTCTG 60.394 55.000 4.39 0.00 38.23 3.02
5398 8502 0.679960 GGGGCCACGCTATTTTCTGT 60.680 55.000 4.39 0.00 0.00 3.41
5399 8503 1.407712 GGGGCCACGCTATTTTCTGTA 60.408 52.381 4.39 0.00 0.00 2.74
5400 8504 1.940613 GGGCCACGCTATTTTCTGTAG 59.059 52.381 4.39 0.00 0.00 2.74
5401 8505 1.330829 GGCCACGCTATTTTCTGTAGC 59.669 52.381 0.00 0.00 40.83 3.58
5405 8509 3.422646 GCTATTTTCTGTAGCGCGC 57.577 52.632 26.66 26.66 35.68 6.86
5406 8510 0.931005 GCTATTTTCTGTAGCGCGCT 59.069 50.000 38.01 38.01 35.68 5.92
5407 8511 2.124903 GCTATTTTCTGTAGCGCGCTA 58.875 47.619 35.48 35.48 35.68 4.26
5408 8512 2.731976 GCTATTTTCTGTAGCGCGCTAT 59.268 45.455 39.99 26.62 35.68 2.97
5409 8513 3.184581 GCTATTTTCTGTAGCGCGCTATT 59.815 43.478 39.99 20.35 35.68 1.73
5410 8514 4.318831 GCTATTTTCTGTAGCGCGCTATTT 60.319 41.667 39.99 19.95 35.68 1.40
5411 8515 4.616181 ATTTTCTGTAGCGCGCTATTTT 57.384 36.364 39.99 19.54 0.00 1.82
5412 8516 4.413495 TTTTCTGTAGCGCGCTATTTTT 57.587 36.364 39.99 18.75 0.00 1.94
5451 8555 9.606631 ACCTAAAGAAATCAATAGTGATCAGAC 57.393 33.333 6.07 0.00 44.02 3.51
5452 8556 9.050601 CCTAAAGAAATCAATAGTGATCAGACC 57.949 37.037 6.07 0.00 44.02 3.85
5453 8557 9.829507 CTAAAGAAATCAATAGTGATCAGACCT 57.170 33.333 6.07 0.00 44.02 3.85
5455 8559 9.525826 AAAGAAATCAATAGTGATCAGACCTTT 57.474 29.630 6.07 8.63 44.02 3.11
5456 8560 9.525826 AAGAAATCAATAGTGATCAGACCTTTT 57.474 29.630 6.07 0.00 44.02 2.27
5457 8561 9.525826 AGAAATCAATAGTGATCAGACCTTTTT 57.474 29.630 6.07 0.00 44.02 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.478072 TGGACTTTGATGGCACTGGT 59.522 50.000 0.00 0.00 0.00 4.00
40 41 1.266989 ACGTACGTTGCGTGTCAAAAC 60.267 47.619 16.72 0.00 41.39 2.43
244 292 3.848726 CACACATGCCCAAGGTTTTATC 58.151 45.455 0.00 0.00 0.00 1.75
314 365 4.477302 ACATTTCCGTAAGACGTTTTGG 57.523 40.909 0.83 0.00 40.58 3.28
351 422 1.614413 GGGTAAGTAGGAGCTCCGATG 59.386 57.143 26.95 0.00 42.08 3.84
424 506 9.588096 AAGAATTATTTCTGGAGTTTGTAACCT 57.412 29.630 0.76 0.00 41.42 3.50
425 507 9.841880 GAAGAATTATTTCTGGAGTTTGTAACC 57.158 33.333 0.76 0.00 41.42 2.85
436 518 9.373603 TGAATGCATTTGAAGAATTATTTCTGG 57.626 29.630 14.33 0.00 41.42 3.86
450 534 2.292389 ACCTCCCCATGAATGCATTTGA 60.292 45.455 14.33 3.90 30.68 2.69
466 550 1.146359 ACCCCAGTTGGTTTAACCTCC 59.854 52.381 15.68 5.67 39.58 4.30
485 569 4.249661 TGTGTCAAAAGAAAAAGGGCAAC 58.750 39.130 0.00 0.00 0.00 4.17
512 597 6.165577 AGTTTGCAACCATTAAATCATGTCC 58.834 36.000 0.00 0.00 0.00 4.02
661 3005 3.942829 TCCAAGAAGCAAGTATGACCAG 58.057 45.455 0.00 0.00 0.00 4.00
937 3291 5.163540 GGTAGCGTGTTCATATATAGAGGGG 60.164 48.000 0.00 0.00 0.00 4.79
1050 3404 8.275040 CAAGGAAGAAGGATTAGGAAAGGAATA 58.725 37.037 0.00 0.00 0.00 1.75
1074 3428 1.003928 AGATCAGTGGAGTGCATGCAA 59.996 47.619 24.58 3.23 0.00 4.08
1495 3852 1.151668 CGGAGAAGCAAACACTCAGG 58.848 55.000 0.00 0.00 33.00 3.86
1773 4130 2.174639 TGCAGAGGTTTGAAGGAAAGGA 59.825 45.455 0.00 0.00 0.00 3.36
2064 4421 2.906389 TGGAAGAGTGTAGCCAATGTCT 59.094 45.455 0.00 0.00 0.00 3.41
2500 4857 4.923415 AGATTTCCAAGGGTAACAGGAAG 58.077 43.478 0.00 0.00 42.15 3.46
2565 4922 3.931907 ATCGATTGTGGGATTTCTCCA 57.068 42.857 0.00 0.00 44.08 3.86
2652 5009 8.887036 ACAAATTTTTACATCCTTCCAAACTC 57.113 30.769 0.00 0.00 0.00 3.01
2664 5021 9.225436 AGGTTCAACAACAACAAATTTTTACAT 57.775 25.926 0.00 0.00 33.70 2.29
2781 5138 5.461516 TCTGAGTAGGTATGTTCCCACTA 57.538 43.478 0.00 0.00 0.00 2.74
2836 5193 7.178573 TCACCTGATAATTGGTTGTTGGATAA 58.821 34.615 0.00 0.00 33.75 1.75
2878 5235 4.326255 CGAAAGGAGGCATTGGCT 57.674 55.556 13.22 13.22 42.48 4.75
2894 5251 3.027412 TCCTCCAAAGAGAGAGATTCCG 58.973 50.000 0.00 0.00 43.39 4.30
3100 5457 3.286353 TGAACACTGCACTTGAATTGGA 58.714 40.909 0.00 0.00 0.00 3.53
3209 5566 7.064253 GTGGAACCACTATAGTTACAACATGTC 59.936 40.741 15.69 0.00 39.72 3.06
3437 5794 5.481105 TGGCAATGGATTGAAATTCTGAAC 58.519 37.500 3.47 0.00 40.14 3.18
3494 5851 7.780008 TCACATTCAACGAAGAAACTCTTTA 57.220 32.000 0.00 0.00 36.73 1.85
3509 5866 6.631971 TGTTTCTTAGTGCATCACATTCAA 57.368 33.333 0.00 0.00 36.74 2.69
3537 5894 3.264706 TCACCCTAATCAAATTCCGGTGA 59.735 43.478 0.00 13.00 43.05 4.02
4019 6376 6.459670 TCACTTAGTTGAGGCGTGATAATA 57.540 37.500 0.00 0.00 30.41 0.98
4020 6377 5.339008 TCACTTAGTTGAGGCGTGATAAT 57.661 39.130 0.00 0.00 30.41 1.28
4073 6447 2.782925 TGCACCCCATACCATATTCTGT 59.217 45.455 0.00 0.00 0.00 3.41
4084 6458 2.575735 TGTTGAGATCTTGCACCCCATA 59.424 45.455 0.00 0.00 0.00 2.74
4150 6524 1.626321 TCTGTTGGATGCTTTCCCGTA 59.374 47.619 4.13 0.00 44.77 4.02
4261 6635 6.219537 TCTCCTCCTTCTCCATCATATGTA 57.780 41.667 1.90 0.00 0.00 2.29
4305 6679 4.330944 AGACGAGTGACACACCATTTTA 57.669 40.909 8.59 0.00 34.49 1.52
4324 6698 4.518970 CACTTTAGGCCAAGTTTTGCTAGA 59.481 41.667 5.01 0.00 34.60 2.43
4554 6932 8.618702 ATCTCTTTGTAATTCCATATGCTCAG 57.381 34.615 0.00 0.00 0.00 3.35
4628 7006 2.694397 AGATAGGGTAGAGCCATGCAA 58.306 47.619 0.00 0.00 39.65 4.08
4650 7029 5.471797 TGTGAGAACAGAAGAACACAAACAA 59.528 36.000 0.00 0.00 35.77 2.83
4651 7030 5.000591 TGTGAGAACAGAAGAACACAAACA 58.999 37.500 0.00 0.00 35.77 2.83
4857 7241 0.378610 TGATCTAGCAGAGTCACGCG 59.621 55.000 3.53 3.53 0.00 6.01
4880 7329 5.404946 CGGTAATAGGACAAACGAAAGAGA 58.595 41.667 0.00 0.00 0.00 3.10
4883 7332 3.063045 GCCGGTAATAGGACAAACGAAAG 59.937 47.826 1.90 0.00 0.00 2.62
4934 7383 3.524380 ACGGATGGGTAAAATAGGGAACA 59.476 43.478 0.00 0.00 0.00 3.18
4998 8100 8.114743 AGAAATCAAAATGGAAGAGGAGAAGAT 58.885 33.333 0.00 0.00 0.00 2.40
5013 8116 7.716560 CAGGTGGAAGGAAAAAGAAATCAAAAT 59.283 33.333 0.00 0.00 0.00 1.82
5037 8140 7.197703 ACGAAAACCAATGGTAAAAACTACAG 58.802 34.615 4.88 0.00 33.12 2.74
5084 8187 6.620678 AGACATGATTTCATTTGGTAAACCG 58.379 36.000 0.00 0.00 34.68 4.44
5139 8242 1.462731 TTGTGGCCAATTGAAGCGCT 61.463 50.000 7.24 2.64 0.00 5.92
5143 8246 2.288395 GGACACTTGTGGCCAATTGAAG 60.288 50.000 19.88 10.24 35.45 3.02
5198 8302 6.015856 TGTTGCAACGGGGATATAAATATTGG 60.016 38.462 23.79 0.00 0.00 3.16
5226 8330 5.010213 GTGGGTAAAACAAGCTAATTGGACA 59.990 40.000 0.00 0.00 43.68 4.02
5265 8369 1.582502 GCTATTAGCGGCGTTATAGCG 59.417 52.381 23.43 4.42 37.00 4.26
5266 8370 2.344741 GTGCTATTAGCGGCGTTATAGC 59.655 50.000 27.31 27.31 46.26 2.97
5267 8371 2.592897 CGTGCTATTAGCGGCGTTATAG 59.407 50.000 18.29 13.57 46.26 1.31
5268 8372 2.587956 CGTGCTATTAGCGGCGTTATA 58.412 47.619 18.29 3.30 46.26 0.98
5269 8373 1.415374 CGTGCTATTAGCGGCGTTAT 58.585 50.000 18.29 2.16 46.26 1.89
5270 8374 1.210545 GCGTGCTATTAGCGGCGTTA 61.211 55.000 23.58 3.34 46.26 3.18
5271 8375 2.522638 GCGTGCTATTAGCGGCGTT 61.523 57.895 23.58 4.68 46.26 4.84
5272 8376 2.067091 TAGCGTGCTATTAGCGGCGT 62.067 55.000 23.58 16.42 46.26 5.68
5273 8377 0.732880 ATAGCGTGCTATTAGCGGCG 60.733 55.000 20.72 20.72 46.26 6.46
5274 8378 2.186076 CTATAGCGTGCTATTAGCGGC 58.814 52.381 18.62 18.55 46.26 6.53
5275 8379 2.186076 GCTATAGCGTGCTATTAGCGG 58.814 52.381 18.62 6.68 46.26 5.52
5276 8380 2.863739 TGCTATAGCGTGCTATTAGCG 58.136 47.619 18.62 7.48 44.30 4.26
5277 8381 7.585867 TCTATATGCTATAGCGTGCTATTAGC 58.414 38.462 26.43 21.07 45.83 3.09
5278 8382 9.952188 TTTCTATATGCTATAGCGTGCTATTAG 57.048 33.333 26.43 17.73 45.83 1.73
5280 8384 9.823647 ATTTTCTATATGCTATAGCGTGCTATT 57.176 29.630 26.43 10.41 45.83 1.73
5281 8385 9.823647 AATTTTCTATATGCTATAGCGTGCTAT 57.176 29.630 26.43 17.65 45.83 2.97
5282 8386 9.087424 CAATTTTCTATATGCTATAGCGTGCTA 57.913 33.333 26.43 16.86 45.83 3.49
5283 8387 7.604164 ACAATTTTCTATATGCTATAGCGTGCT 59.396 33.333 26.43 16.66 45.83 4.40
5284 8388 7.743104 ACAATTTTCTATATGCTATAGCGTGC 58.257 34.615 26.43 2.18 45.83 5.34
5285 8389 9.144747 AGACAATTTTCTATATGCTATAGCGTG 57.855 33.333 26.43 12.19 45.83 5.34
5286 8390 9.360093 GAGACAATTTTCTATATGCTATAGCGT 57.640 33.333 22.53 22.53 45.83 5.07
5287 8391 8.527488 CGAGACAATTTTCTATATGCTATAGCG 58.473 37.037 19.55 5.29 45.83 4.26
5288 8392 8.324567 GCGAGACAATTTTCTATATGCTATAGC 58.675 37.037 18.18 18.18 42.50 2.97
5289 8393 9.579768 AGCGAGACAATTTTCTATATGCTATAG 57.420 33.333 7.82 0.00 0.00 1.31
5291 8395 9.929180 TTAGCGAGACAATTTTCTATATGCTAT 57.071 29.630 13.53 0.04 29.56 2.97
5292 8396 9.758651 TTTAGCGAGACAATTTTCTATATGCTA 57.241 29.630 10.72 10.72 0.00 3.49
5293 8397 8.662781 TTTAGCGAGACAATTTTCTATATGCT 57.337 30.769 12.09 12.09 0.00 3.79
5304 8408 9.507280 CACATTGATTTATTTAGCGAGACAATT 57.493 29.630 0.00 0.00 0.00 2.32
5305 8409 7.645340 GCACATTGATTTATTTAGCGAGACAAT 59.355 33.333 0.00 0.00 0.00 2.71
5306 8410 6.966632 GCACATTGATTTATTTAGCGAGACAA 59.033 34.615 0.00 0.00 0.00 3.18
5307 8411 6.093357 TGCACATTGATTTATTTAGCGAGACA 59.907 34.615 0.00 0.00 0.00 3.41
5308 8412 6.486248 TGCACATTGATTTATTTAGCGAGAC 58.514 36.000 0.00 0.00 0.00 3.36
5309 8413 6.676237 TGCACATTGATTTATTTAGCGAGA 57.324 33.333 0.00 0.00 0.00 4.04
5310 8414 7.566328 GCATTGCACATTGATTTATTTAGCGAG 60.566 37.037 3.15 0.00 0.00 5.03
5311 8415 6.198778 GCATTGCACATTGATTTATTTAGCGA 59.801 34.615 3.15 0.00 0.00 4.93
5312 8416 6.349426 GCATTGCACATTGATTTATTTAGCG 58.651 36.000 3.15 0.00 0.00 4.26
5313 8417 6.480981 AGGCATTGCACATTGATTTATTTAGC 59.519 34.615 11.39 0.00 0.00 3.09
5314 8418 7.096353 CGAGGCATTGCACATTGATTTATTTAG 60.096 37.037 11.39 0.00 0.00 1.85
5315 8419 6.696583 CGAGGCATTGCACATTGATTTATTTA 59.303 34.615 11.39 0.00 0.00 1.40
5316 8420 5.521010 CGAGGCATTGCACATTGATTTATTT 59.479 36.000 11.39 0.00 0.00 1.40
5317 8421 5.045215 CGAGGCATTGCACATTGATTTATT 58.955 37.500 11.39 0.00 0.00 1.40
5318 8422 4.613944 CGAGGCATTGCACATTGATTTAT 58.386 39.130 11.39 0.00 0.00 1.40
5319 8423 3.734597 GCGAGGCATTGCACATTGATTTA 60.735 43.478 11.39 0.00 35.70 1.40
5320 8424 2.883574 CGAGGCATTGCACATTGATTT 58.116 42.857 11.39 0.00 0.00 2.17
5321 8425 1.470285 GCGAGGCATTGCACATTGATT 60.470 47.619 11.39 0.00 35.70 2.57
5322 8426 0.101759 GCGAGGCATTGCACATTGAT 59.898 50.000 11.39 0.00 35.70 2.57
5323 8427 0.961857 AGCGAGGCATTGCACATTGA 60.962 50.000 13.99 0.00 38.41 2.57
5324 8428 0.734309 TAGCGAGGCATTGCACATTG 59.266 50.000 13.99 1.12 38.41 2.82
5325 8429 1.462616 TTAGCGAGGCATTGCACATT 58.537 45.000 13.99 0.00 38.41 2.71
5326 8430 1.683943 ATTAGCGAGGCATTGCACAT 58.316 45.000 13.99 0.83 38.41 3.21
5327 8431 2.212652 CTATTAGCGAGGCATTGCACA 58.787 47.619 13.99 0.00 38.41 4.57
5328 8432 1.069636 GCTATTAGCGAGGCATTGCAC 60.070 52.381 13.99 3.11 38.41 4.57
5329 8433 1.229428 GCTATTAGCGAGGCATTGCA 58.771 50.000 13.99 0.00 38.41 4.08
5330 8434 1.069636 GTGCTATTAGCGAGGCATTGC 60.070 52.381 10.94 1.28 46.26 3.56
5331 8435 1.193203 CGTGCTATTAGCGAGGCATTG 59.807 52.381 10.94 0.00 46.26 2.82
5332 8436 1.502231 CGTGCTATTAGCGAGGCATT 58.498 50.000 10.94 0.00 46.26 3.56
5333 8437 0.946221 GCGTGCTATTAGCGAGGCAT 60.946 55.000 18.94 0.00 46.26 4.40
5334 8438 1.591594 GCGTGCTATTAGCGAGGCA 60.592 57.895 18.94 0.00 46.26 4.75
5335 8439 0.039437 TAGCGTGCTATTAGCGAGGC 60.039 55.000 17.41 17.41 46.26 4.70
5336 8440 2.638556 ATAGCGTGCTATTAGCGAGG 57.361 50.000 8.54 7.17 46.26 4.63
5337 8441 3.102276 GCTATAGCGTGCTATTAGCGAG 58.898 50.000 18.62 11.00 46.26 5.03
5338 8442 2.486592 TGCTATAGCGTGCTATTAGCGA 59.513 45.455 18.62 12.37 44.30 4.93
5339 8443 2.594654 GTGCTATAGCGTGCTATTAGCG 59.405 50.000 18.62 7.48 44.30 4.26
5340 8444 2.594654 CGTGCTATAGCGTGCTATTAGC 59.405 50.000 18.62 21.07 45.83 3.09
5341 8445 2.594654 GCGTGCTATAGCGTGCTATTAG 59.405 50.000 25.40 14.04 45.83 1.73
5342 8446 2.592194 GCGTGCTATAGCGTGCTATTA 58.408 47.619 25.40 3.80 45.83 0.98
5343 8447 1.419374 GCGTGCTATAGCGTGCTATT 58.581 50.000 25.40 4.72 45.83 1.73
5344 8448 3.108521 GCGTGCTATAGCGTGCTAT 57.891 52.632 25.40 17.65 45.83 2.97
5345 8449 4.628160 GCGTGCTATAGCGTGCTA 57.372 55.556 25.40 3.73 45.83 3.49
5346 8450 2.808315 AGCGTGCTATAGCGTGCT 59.192 55.556 28.16 28.16 45.20 4.40
5347 8451 1.419374 ATTAGCGTGCTATAGCGTGC 58.581 50.000 25.35 25.35 45.83 5.34
5348 8452 2.594654 GCTATTAGCGTGCTATAGCGTG 59.405 50.000 19.55 14.81 45.83 5.34
5349 8453 2.228103 TGCTATTAGCGTGCTATAGCGT 59.772 45.455 19.55 7.04 46.26 5.07
5350 8454 2.863739 TGCTATTAGCGTGCTATAGCG 58.136 47.619 19.55 7.69 46.26 4.26
5351 8455 7.470289 AAATATGCTATTAGCGTGCTATAGC 57.530 36.000 18.18 18.18 46.26 2.97
5352 8456 9.087424 TGAAAATATGCTATTAGCGTGCTATAG 57.913 33.333 18.61 7.85 46.26 1.31
5353 8457 8.996024 TGAAAATATGCTATTAGCGTGCTATA 57.004 30.769 18.61 7.66 46.26 1.31
5354 8458 7.065085 CCTGAAAATATGCTATTAGCGTGCTAT 59.935 37.037 18.61 5.81 46.26 2.97
5355 8459 6.368791 CCTGAAAATATGCTATTAGCGTGCTA 59.631 38.462 18.61 0.00 46.26 3.49
5356 8460 5.180117 CCTGAAAATATGCTATTAGCGTGCT 59.820 40.000 18.61 0.00 46.26 4.40
5357 8461 5.385617 CCTGAAAATATGCTATTAGCGTGC 58.614 41.667 18.61 5.49 46.26 5.34
5358 8462 5.106555 CCCCTGAAAATATGCTATTAGCGTG 60.107 44.000 18.61 2.19 46.26 5.34
5359 8463 5.003804 CCCCTGAAAATATGCTATTAGCGT 58.996 41.667 14.53 14.53 46.26 5.07
5360 8464 4.142600 GCCCCTGAAAATATGCTATTAGCG 60.143 45.833 10.94 0.00 46.26 4.26
5361 8465 4.158579 GGCCCCTGAAAATATGCTATTAGC 59.841 45.833 8.80 8.80 42.82 3.09
5362 8466 5.183904 GTGGCCCCTGAAAATATGCTATTAG 59.816 44.000 0.00 0.00 0.00 1.73
5363 8467 5.076873 GTGGCCCCTGAAAATATGCTATTA 58.923 41.667 0.00 0.00 0.00 0.98
5364 8468 3.897505 GTGGCCCCTGAAAATATGCTATT 59.102 43.478 0.00 0.00 0.00 1.73
5365 8469 3.500343 GTGGCCCCTGAAAATATGCTAT 58.500 45.455 0.00 0.00 0.00 2.97
5366 8470 2.748132 CGTGGCCCCTGAAAATATGCTA 60.748 50.000 0.00 0.00 0.00 3.49
5367 8471 1.780503 GTGGCCCCTGAAAATATGCT 58.219 50.000 0.00 0.00 0.00 3.79
5368 8472 0.385390 CGTGGCCCCTGAAAATATGC 59.615 55.000 0.00 0.00 0.00 3.14
5369 8473 0.385390 GCGTGGCCCCTGAAAATATG 59.615 55.000 0.00 0.00 0.00 1.78
5370 8474 0.258774 AGCGTGGCCCCTGAAAATAT 59.741 50.000 0.00 0.00 0.00 1.28
5371 8475 0.913205 TAGCGTGGCCCCTGAAAATA 59.087 50.000 0.00 0.00 0.00 1.40
5372 8476 0.258774 ATAGCGTGGCCCCTGAAAAT 59.741 50.000 0.00 0.00 0.00 1.82
5373 8477 0.039035 AATAGCGTGGCCCCTGAAAA 59.961 50.000 0.00 0.00 0.00 2.29
5374 8478 0.039035 AAATAGCGTGGCCCCTGAAA 59.961 50.000 0.00 0.00 0.00 2.69
5375 8479 0.039035 AAAATAGCGTGGCCCCTGAA 59.961 50.000 0.00 0.00 0.00 3.02
5376 8480 0.393808 GAAAATAGCGTGGCCCCTGA 60.394 55.000 0.00 0.00 0.00 3.86
5377 8481 0.394352 AGAAAATAGCGTGGCCCCTG 60.394 55.000 0.00 0.00 0.00 4.45
5378 8482 0.394352 CAGAAAATAGCGTGGCCCCT 60.394 55.000 0.00 0.00 0.00 4.79
5379 8483 0.679960 ACAGAAAATAGCGTGGCCCC 60.680 55.000 0.00 0.00 0.00 5.80
5380 8484 1.940613 CTACAGAAAATAGCGTGGCCC 59.059 52.381 0.00 0.00 0.00 5.80
5381 8485 1.330829 GCTACAGAAAATAGCGTGGCC 59.669 52.381 0.00 0.00 36.02 5.36
5382 8486 2.739293 GCTACAGAAAATAGCGTGGC 57.261 50.000 0.00 0.00 36.02 5.01
5387 8491 0.931005 AGCGCGCTACAGAAAATAGC 59.069 50.000 35.79 0.00 41.43 2.97
5388 8492 4.974103 AATAGCGCGCTACAGAAAATAG 57.026 40.909 40.42 0.00 0.00 1.73
5389 8493 5.728351 AAAATAGCGCGCTACAGAAAATA 57.272 34.783 40.42 19.94 0.00 1.40
5390 8494 4.616181 AAAATAGCGCGCTACAGAAAAT 57.384 36.364 40.42 22.89 0.00 1.82
5391 8495 4.413495 AAAAATAGCGCGCTACAGAAAA 57.587 36.364 40.42 21.55 0.00 2.29
5425 8529 9.606631 GTCTGATCACTATTGATTTCTTTAGGT 57.393 33.333 0.00 0.00 42.95 3.08
5426 8530 9.050601 GGTCTGATCACTATTGATTTCTTTAGG 57.949 37.037 0.00 0.00 42.95 2.69
5427 8531 9.829507 AGGTCTGATCACTATTGATTTCTTTAG 57.170 33.333 0.00 0.00 42.95 1.85
5429 8533 9.525826 AAAGGTCTGATCACTATTGATTTCTTT 57.474 29.630 0.00 2.18 42.95 2.52
5430 8534 9.525826 AAAAGGTCTGATCACTATTGATTTCTT 57.474 29.630 0.00 0.00 42.95 2.52
5431 8535 9.525826 AAAAAGGTCTGATCACTATTGATTTCT 57.474 29.630 0.00 0.00 42.95 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.