Multiple sequence alignment - TraesCS7D01G048300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G048300 chr7D 100.000 2283 0 0 1403 3685 24942102 24944384 0.000000e+00 4217.0
1 TraesCS7D01G048300 chr7D 100.000 1310 0 0 1 1310 24940700 24942009 0.000000e+00 2420.0
2 TraesCS7D01G048300 chr7A 94.732 2259 102 7 1403 3655 25746723 25748970 0.000000e+00 3496.0
3 TraesCS7D01G048300 chr7A 92.596 2269 129 12 1403 3663 25689552 25691789 0.000000e+00 3223.0
4 TraesCS7D01G048300 chr7A 93.611 1894 107 6 1403 3284 37726215 37724324 0.000000e+00 2815.0
5 TraesCS7D01G048300 chr7A 91.756 1031 76 6 283 1310 25688497 25689521 0.000000e+00 1424.0
6 TraesCS7D01G048300 chr7A 84.130 1046 93 34 283 1308 37727240 37726248 0.000000e+00 944.0
7 TraesCS7D01G048300 chr7A 92.763 456 17 6 864 1310 25746244 25746692 0.000000e+00 645.0
8 TraesCS7D01G048300 chr7A 89.757 371 32 3 3315 3685 37724328 37723964 1.550000e-128 470.0
9 TraesCS7D01G048300 chr4A 93.605 2283 139 4 1403 3685 708618131 708615856 0.000000e+00 3400.0
10 TraesCS7D01G048300 chr4A 97.143 35 1 0 791 825 611267196 611267162 3.970000e-05 60.2
11 TraesCS7D01G048300 chr6B 88.487 304 14 8 1 285 173133267 173132966 7.570000e-92 348.0
12 TraesCS7D01G048300 chr5B 88.333 300 15 7 1 282 591729699 591729996 3.520000e-90 342.0
13 TraesCS7D01G048300 chr5B 85.948 306 19 10 3 285 702878315 702878619 4.620000e-79 305.0
14 TraesCS7D01G048300 chr7B 85.668 307 21 5 1 285 427404945 427405250 5.980000e-78 302.0
15 TraesCS7D01G048300 chr7B 82.500 320 20 11 1 285 532424064 532424382 7.900000e-62 248.0
16 TraesCS7D01G048300 chr7B 100.000 31 0 0 255 285 670993203 670993233 1.430000e-04 58.4
17 TraesCS7D01G048300 chr7B 100.000 31 0 0 255 285 671058123 671058153 1.430000e-04 58.4
18 TraesCS7D01G048300 chr7B 100.000 31 0 0 255 285 671248707 671248737 1.430000e-04 58.4
19 TraesCS7D01G048300 chr1D 88.976 254 15 4 1 243 19974505 19974756 5.980000e-78 302.0
20 TraesCS7D01G048300 chr1D 85.621 306 21 11 1 285 418569160 418569463 2.150000e-77 300.0
21 TraesCS7D01G048300 chr5D 85.531 311 18 10 1 285 434650706 434651015 2.150000e-77 300.0
22 TraesCS7D01G048300 chr5D 100.000 31 0 0 255 285 517475199 517475229 1.430000e-04 58.4
23 TraesCS7D01G048300 chr2D 85.443 316 14 11 1 285 46880169 46880483 2.150000e-77 300.0
24 TraesCS7D01G048300 chr3D 86.000 250 23 4 3 243 574524688 574524934 1.310000e-64 257.0
25 TraesCS7D01G048300 chr6A 82.623 305 25 20 1 281 34559486 34559786 1.020000e-60 244.0
26 TraesCS7D01G048300 chr2B 85.795 176 9 7 80 243 68242191 68242362 4.890000e-39 172.0
27 TraesCS7D01G048300 chrUn 100.000 31 0 0 255 285 147146843 147146873 1.430000e-04 58.4
28 TraesCS7D01G048300 chrUn 100.000 31 0 0 255 285 147228633 147228663 1.430000e-04 58.4
29 TraesCS7D01G048300 chrUn 100.000 31 0 0 255 285 147298113 147298143 1.430000e-04 58.4
30 TraesCS7D01G048300 chr1B 97.143 35 0 1 251 285 169854072 169854039 1.430000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G048300 chr7D 24940700 24944384 3684 False 3318.500000 4217 100.0000 1 3685 2 chr7D.!!$F1 3684
1 TraesCS7D01G048300 chr7A 25688497 25691789 3292 False 2323.500000 3223 92.1760 283 3663 2 chr7A.!!$F1 3380
2 TraesCS7D01G048300 chr7A 25746244 25748970 2726 False 2070.500000 3496 93.7475 864 3655 2 chr7A.!!$F2 2791
3 TraesCS7D01G048300 chr7A 37723964 37727240 3276 True 1409.666667 2815 89.1660 283 3685 3 chr7A.!!$R1 3402
4 TraesCS7D01G048300 chr4A 708615856 708618131 2275 True 3400.000000 3400 93.6050 1403 3685 1 chr4A.!!$R2 2282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.250513 AACCGGGTGAGAGAAGATGC 59.749 55.000 6.32 0.00 0.0 3.91 F
917 946 1.006287 GTTCTTATTCGCGCGTCCTTC 60.006 52.381 30.98 10.05 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2227 2259 0.480252 AAACAGCTTCCTTGCCTCCT 59.520 50.0 0.00 0.0 0.00 3.69 R
2894 2942 1.964552 CCCTCCATGAGCTCATCAAC 58.035 55.0 26.44 0.0 42.53 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.299023 TGTGACAACAATCTAACATGTGAC 57.701 37.500 0.00 0.00 31.82 3.67
24 25 6.054941 TGTGACAACAATCTAACATGTGACT 58.945 36.000 0.00 0.00 31.82 3.41
25 26 7.213678 TGTGACAACAATCTAACATGTGACTA 58.786 34.615 0.00 0.00 31.82 2.59
26 27 7.384932 TGTGACAACAATCTAACATGTGACTAG 59.615 37.037 0.00 0.00 31.82 2.57
27 28 6.873605 TGACAACAATCTAACATGTGACTAGG 59.126 38.462 0.00 0.00 0.00 3.02
28 29 7.004555 ACAACAATCTAACATGTGACTAGGA 57.995 36.000 0.00 0.00 0.00 2.94
29 30 7.099764 ACAACAATCTAACATGTGACTAGGAG 58.900 38.462 0.00 0.00 0.00 3.69
30 31 5.665459 ACAATCTAACATGTGACTAGGAGC 58.335 41.667 0.00 0.00 0.00 4.70
31 32 5.187772 ACAATCTAACATGTGACTAGGAGCA 59.812 40.000 0.00 0.00 0.00 4.26
32 33 5.939764 ATCTAACATGTGACTAGGAGCAA 57.060 39.130 0.00 0.00 0.00 3.91
33 34 5.738619 TCTAACATGTGACTAGGAGCAAA 57.261 39.130 0.00 0.00 0.00 3.68
34 35 6.109156 TCTAACATGTGACTAGGAGCAAAA 57.891 37.500 0.00 0.00 0.00 2.44
35 36 6.166279 TCTAACATGTGACTAGGAGCAAAAG 58.834 40.000 0.00 0.00 0.00 2.27
36 37 3.679389 ACATGTGACTAGGAGCAAAAGG 58.321 45.455 0.00 0.00 0.00 3.11
37 38 3.327757 ACATGTGACTAGGAGCAAAAGGA 59.672 43.478 0.00 0.00 0.00 3.36
38 39 4.202461 ACATGTGACTAGGAGCAAAAGGAA 60.202 41.667 0.00 0.00 0.00 3.36
39 40 4.640771 TGTGACTAGGAGCAAAAGGAAT 57.359 40.909 0.00 0.00 0.00 3.01
40 41 4.985538 TGTGACTAGGAGCAAAAGGAATT 58.014 39.130 0.00 0.00 0.00 2.17
41 42 6.121776 TGTGACTAGGAGCAAAAGGAATTA 57.878 37.500 0.00 0.00 0.00 1.40
42 43 6.539173 TGTGACTAGGAGCAAAAGGAATTAA 58.461 36.000 0.00 0.00 0.00 1.40
43 44 7.001674 TGTGACTAGGAGCAAAAGGAATTAAA 58.998 34.615 0.00 0.00 0.00 1.52
44 45 7.669722 TGTGACTAGGAGCAAAAGGAATTAAAT 59.330 33.333 0.00 0.00 0.00 1.40
45 46 8.523658 GTGACTAGGAGCAAAAGGAATTAAATT 58.476 33.333 0.00 0.00 0.00 1.82
46 47 9.747898 TGACTAGGAGCAAAAGGAATTAAATTA 57.252 29.630 0.00 0.00 0.00 1.40
94 95 7.750229 ATTCACAAATCTAGAGTTTGAAGCA 57.250 32.000 23.11 12.53 38.51 3.91
95 96 7.566760 TTCACAAATCTAGAGTTTGAAGCAA 57.433 32.000 23.11 12.73 38.51 3.91
96 97 7.566760 TCACAAATCTAGAGTTTGAAGCAAA 57.433 32.000 23.11 0.00 38.51 3.68
97 98 8.169977 TCACAAATCTAGAGTTTGAAGCAAAT 57.830 30.769 23.11 6.69 38.51 2.32
98 99 8.632679 TCACAAATCTAGAGTTTGAAGCAAATT 58.367 29.630 23.11 0.00 38.51 1.82
99 100 9.252962 CACAAATCTAGAGTTTGAAGCAAATTT 57.747 29.630 23.11 4.65 38.51 1.82
100 101 9.252962 ACAAATCTAGAGTTTGAAGCAAATTTG 57.747 29.630 23.11 14.03 38.51 2.32
101 102 9.467258 CAAATCTAGAGTTTGAAGCAAATTTGA 57.533 29.630 22.31 0.00 38.51 2.69
103 104 9.468532 AATCTAGAGTTTGAAGCAAATTTGAAC 57.531 29.630 22.31 15.37 35.74 3.18
104 105 7.995289 TCTAGAGTTTGAAGCAAATTTGAACA 58.005 30.769 22.31 13.86 35.74 3.18
105 106 8.465999 TCTAGAGTTTGAAGCAAATTTGAACAA 58.534 29.630 22.31 18.23 35.74 2.83
106 107 7.903995 AGAGTTTGAAGCAAATTTGAACAAA 57.096 28.000 22.31 21.98 35.74 2.83
107 108 8.496707 AGAGTTTGAAGCAAATTTGAACAAAT 57.503 26.923 22.31 15.97 42.35 2.32
109 110 9.213819 GAGTTTGAAGCAAATTTGAACAAATTC 57.786 29.630 22.31 23.99 46.76 2.17
110 111 8.728833 AGTTTGAAGCAAATTTGAACAAATTCA 58.271 25.926 22.31 15.66 46.76 2.57
131 132 9.743057 AATTCAAATTCGAAAACTAATGACACA 57.257 25.926 0.00 0.00 0.00 3.72
132 133 9.743057 ATTCAAATTCGAAAACTAATGACACAA 57.257 25.926 0.00 0.00 0.00 3.33
133 134 9.574458 TTCAAATTCGAAAACTAATGACACAAA 57.426 25.926 0.00 0.00 0.00 2.83
134 135 9.015577 TCAAATTCGAAAACTAATGACACAAAC 57.984 29.630 0.00 0.00 0.00 2.93
135 136 8.802856 CAAATTCGAAAACTAATGACACAAACA 58.197 29.630 0.00 0.00 0.00 2.83
136 137 8.560576 AATTCGAAAACTAATGACACAAACAG 57.439 30.769 0.00 0.00 0.00 3.16
137 138 6.912203 TCGAAAACTAATGACACAAACAGA 57.088 33.333 0.00 0.00 0.00 3.41
138 139 7.310072 TCGAAAACTAATGACACAAACAGAA 57.690 32.000 0.00 0.00 0.00 3.02
139 140 7.753659 TCGAAAACTAATGACACAAACAGAAA 58.246 30.769 0.00 0.00 0.00 2.52
140 141 7.694784 TCGAAAACTAATGACACAAACAGAAAC 59.305 33.333 0.00 0.00 0.00 2.78
141 142 7.696453 CGAAAACTAATGACACAAACAGAAACT 59.304 33.333 0.00 0.00 0.00 2.66
142 143 9.997482 GAAAACTAATGACACAAACAGAAACTA 57.003 29.630 0.00 0.00 0.00 2.24
144 145 8.958119 AACTAATGACACAAACAGAAACTAGA 57.042 30.769 0.00 0.00 0.00 2.43
145 146 8.366671 ACTAATGACACAAACAGAAACTAGAC 57.633 34.615 0.00 0.00 0.00 2.59
146 147 7.985184 ACTAATGACACAAACAGAAACTAGACA 59.015 33.333 0.00 0.00 0.00 3.41
147 148 7.624360 AATGACACAAACAGAAACTAGACAA 57.376 32.000 0.00 0.00 0.00 3.18
148 149 7.624360 ATGACACAAACAGAAACTAGACAAA 57.376 32.000 0.00 0.00 0.00 2.83
149 150 7.441890 TGACACAAACAGAAACTAGACAAAA 57.558 32.000 0.00 0.00 0.00 2.44
150 151 8.050778 TGACACAAACAGAAACTAGACAAAAT 57.949 30.769 0.00 0.00 0.00 1.82
151 152 8.519526 TGACACAAACAGAAACTAGACAAAATT 58.480 29.630 0.00 0.00 0.00 1.82
152 153 8.687824 ACACAAACAGAAACTAGACAAAATTG 57.312 30.769 0.00 0.00 0.00 2.32
153 154 8.303876 ACACAAACAGAAACTAGACAAAATTGT 58.696 29.630 0.00 0.00 45.65 2.71
154 155 8.586273 CACAAACAGAAACTAGACAAAATTGTG 58.414 33.333 3.05 6.21 42.43 3.33
155 156 8.519526 ACAAACAGAAACTAGACAAAATTGTGA 58.480 29.630 1.62 0.00 42.43 3.58
156 157 9.352784 CAAACAGAAACTAGACAAAATTGTGAA 57.647 29.630 1.62 0.00 42.43 3.18
158 159 9.736023 AACAGAAACTAGACAAAATTGTGAATC 57.264 29.630 1.62 0.00 42.43 2.52
159 160 9.125026 ACAGAAACTAGACAAAATTGTGAATCT 57.875 29.630 1.62 0.00 42.43 2.40
164 165 9.846248 AACTAGACAAAATTGTGAATCTAATGC 57.154 29.630 1.62 0.00 42.43 3.56
165 166 9.013229 ACTAGACAAAATTGTGAATCTAATGCA 57.987 29.630 1.62 0.00 42.43 3.96
166 167 9.844790 CTAGACAAAATTGTGAATCTAATGCAA 57.155 29.630 1.62 0.00 42.43 4.08
168 169 9.545105 AGACAAAATTGTGAATCTAATGCAAAA 57.455 25.926 1.62 0.00 42.43 2.44
264 265 7.526142 AAAAATTCAGAACTCCTTTAGTCCC 57.474 36.000 0.00 0.00 37.50 4.46
265 266 3.955650 TTCAGAACTCCTTTAGTCCCG 57.044 47.619 0.00 0.00 37.50 5.14
266 267 2.176889 TCAGAACTCCTTTAGTCCCGG 58.823 52.381 0.00 0.00 37.50 5.73
267 268 1.900486 CAGAACTCCTTTAGTCCCGGT 59.100 52.381 0.00 0.00 37.50 5.28
268 269 2.302157 CAGAACTCCTTTAGTCCCGGTT 59.698 50.000 0.00 0.00 37.50 4.44
269 270 2.302157 AGAACTCCTTTAGTCCCGGTTG 59.698 50.000 0.00 0.00 37.50 3.77
270 271 2.019807 ACTCCTTTAGTCCCGGTTGA 57.980 50.000 0.00 0.00 30.33 3.18
271 272 2.547990 ACTCCTTTAGTCCCGGTTGAT 58.452 47.619 0.00 0.00 30.33 2.57
272 273 2.236395 ACTCCTTTAGTCCCGGTTGATG 59.764 50.000 0.00 0.00 30.33 3.07
273 274 1.557832 TCCTTTAGTCCCGGTTGATGG 59.442 52.381 0.00 0.00 0.00 3.51
274 275 1.379527 CTTTAGTCCCGGTTGATGGC 58.620 55.000 0.00 0.00 0.00 4.40
275 276 0.988832 TTTAGTCCCGGTTGATGGCT 59.011 50.000 0.00 0.00 0.00 4.75
276 277 0.539986 TTAGTCCCGGTTGATGGCTC 59.460 55.000 0.00 0.00 0.00 4.70
277 278 1.335132 TAGTCCCGGTTGATGGCTCC 61.335 60.000 0.00 0.00 0.00 4.70
278 279 2.609299 TCCCGGTTGATGGCTCCA 60.609 61.111 0.00 0.00 0.00 3.86
279 280 2.227757 TCCCGGTTGATGGCTCCAA 61.228 57.895 0.00 0.00 0.00 3.53
280 281 2.046285 CCCGGTTGATGGCTCCAAC 61.046 63.158 0.00 12.07 42.18 3.77
297 298 0.250513 AACCGGGTGAGAGAAGATGC 59.749 55.000 6.32 0.00 0.00 3.91
320 328 4.674362 CGACGAGGACAATGACAACTATGA 60.674 45.833 0.00 0.00 0.00 2.15
329 337 7.552687 GGACAATGACAACTATGATTTCACCTA 59.447 37.037 0.00 0.00 0.00 3.08
335 343 7.936847 TGACAACTATGATTTCACCTAAGTTGT 59.063 33.333 20.69 20.69 46.30 3.32
377 385 1.078143 GCCCCTAGAGCCACAACTG 60.078 63.158 0.00 0.00 0.00 3.16
398 407 2.365617 GCTACAATGAGCTACTAGGCCA 59.634 50.000 5.01 0.00 39.50 5.36
399 408 2.990066 ACAATGAGCTACTAGGCCAC 57.010 50.000 5.01 0.00 0.00 5.01
435 444 3.980022 TGGGCCAGATTATTGACCTGATA 59.020 43.478 0.00 0.00 0.00 2.15
440 449 5.279006 GCCAGATTATTGACCTGATAGACGA 60.279 44.000 0.00 0.00 0.00 4.20
457 466 9.166173 TGATAGACGATCAGTTTTCATCATTTT 57.834 29.630 0.00 0.00 39.78 1.82
487 496 7.600375 TGTAGCAAGAGATGTGAAGAAAAGTAG 59.400 37.037 0.00 0.00 0.00 2.57
490 499 7.500559 AGCAAGAGATGTGAAGAAAAGTAGTTT 59.499 33.333 0.00 0.00 0.00 2.66
605 617 6.548321 TGTTAACCTACTTTTGATGGGTCAT 58.452 36.000 2.48 0.00 33.56 3.06
658 671 5.004345 CGTTTGTTTCTTGACCATGACAAAC 59.996 40.000 18.42 18.42 40.97 2.93
670 683 5.047188 ACCATGACAAACCGAATGTTTTTC 58.953 37.500 0.00 0.00 44.80 2.29
697 710 6.370442 TGACATTTTTAGTAACGTGAGGATGG 59.630 38.462 0.00 0.00 0.00 3.51
709 722 3.502211 CGTGAGGATGGCAAGTTTAGTTT 59.498 43.478 0.00 0.00 0.00 2.66
719 732 3.911964 GCAAGTTTAGTTTACACGCATGG 59.088 43.478 0.00 0.00 0.00 3.66
726 739 7.389607 AGTTTAGTTTACACGCATGGTAAATCT 59.610 33.333 8.43 9.44 41.28 2.40
762 776 6.942886 TTTTTGCTAGAAAATTACCATGCG 57.057 33.333 0.00 0.00 0.00 4.73
909 938 3.548268 GGAGAAGACAGTTCTTATTCGCG 59.452 47.826 0.00 0.00 42.53 5.87
917 946 1.006287 GTTCTTATTCGCGCGTCCTTC 60.006 52.381 30.98 10.05 0.00 3.46
947 979 5.190132 TCCGTTTGTAATTTCTCTATCCCCA 59.810 40.000 0.00 0.00 0.00 4.96
948 980 5.883673 CCGTTTGTAATTTCTCTATCCCCAA 59.116 40.000 0.00 0.00 0.00 4.12
949 981 6.376018 CCGTTTGTAATTTCTCTATCCCCAAA 59.624 38.462 0.00 0.00 0.00 3.28
950 982 7.248437 CGTTTGTAATTTCTCTATCCCCAAAC 58.752 38.462 0.00 0.00 37.09 2.93
951 983 7.094549 CGTTTGTAATTTCTCTATCCCCAAACA 60.095 37.037 0.00 0.00 39.16 2.83
967 999 1.181786 AACACCAAATACCATGCCGG 58.818 50.000 0.00 0.00 42.50 6.13
1202 1234 2.364317 CTTCTCCCGCCTCCTCCA 60.364 66.667 0.00 0.00 0.00 3.86
1685 1717 2.348998 CTGCTCAAGGGCCTCGTT 59.651 61.111 6.46 0.00 0.00 3.85
1724 1756 1.446272 CGCCCTCAAGGTTCTCGAC 60.446 63.158 0.00 0.00 38.26 4.20
1814 1846 2.110006 GAGGATCTCAAGGGCGCC 59.890 66.667 21.18 21.18 0.00 6.53
1934 1966 4.080469 CAGGATGCAGCTAGGATTATGGAT 60.080 45.833 0.22 0.00 0.00 3.41
1945 1977 4.772483 AGGATTATGGATGAGATGGAGGT 58.228 43.478 0.00 0.00 0.00 3.85
1949 1981 1.369321 GGATGAGATGGAGGTCGCC 59.631 63.158 0.00 0.00 0.00 5.54
2069 2101 2.584608 GCAGGGTACACGCCAGAT 59.415 61.111 0.00 0.00 0.00 2.90
2227 2259 2.655090 TGCAAGAGTGGAATGGTTCA 57.345 45.000 0.00 0.00 0.00 3.18
2386 2418 0.663153 GGATACGAGCCAAATGCCAC 59.337 55.000 0.00 0.00 42.71 5.01
2433 2465 3.287867 TTTGCAAAATTGGGAAGCCAA 57.712 38.095 10.02 0.00 0.00 4.52
2548 2580 6.054941 AGCCAATACATGACGATATTGTTGA 58.945 36.000 0.00 0.00 37.16 3.18
2559 2591 8.279695 TGACGATATTGTTGACAAAATTGTTG 57.720 30.769 0.10 0.00 42.43 3.33
2597 2629 1.114627 GTGGGGATTTCTTGGATGGC 58.885 55.000 0.00 0.00 0.00 4.40
2684 2716 9.356433 CATCTCAATTCAGTGCTAGATACATAG 57.644 37.037 0.00 0.00 0.00 2.23
2710 2744 1.146041 GTGTGGTGTGCAGACTCCA 59.854 57.895 14.32 7.89 42.29 3.86
2796 2840 4.353777 TGGCACTAGTCTTCCTCTGTAAT 58.646 43.478 0.00 0.00 0.00 1.89
2807 2851 7.875554 AGTCTTCCTCTGTAATTTCTCTGAAAC 59.124 37.037 0.00 0.00 0.00 2.78
2894 2942 4.100084 TGGCGGTGATGAGGCTGG 62.100 66.667 0.00 0.00 0.00 4.85
3101 3150 7.777095 ACTTTCTGGATGAATAGTGTAGAGTC 58.223 38.462 0.00 0.00 34.24 3.36
3102 3151 7.617723 ACTTTCTGGATGAATAGTGTAGAGTCT 59.382 37.037 0.00 0.00 34.24 3.24
3132 3181 3.351740 TCTTGGTTGCTGAACTGAAACA 58.648 40.909 5.25 0.00 32.15 2.83
3215 3273 2.355756 CCTGGGACATTGTATTTCTGCG 59.644 50.000 0.00 0.00 38.20 5.18
3235 3293 2.233922 CGGTGTAGAAGAGGATGTGGTT 59.766 50.000 0.00 0.00 0.00 3.67
3275 3333 7.954788 ATTGAAGTACTTTGTGAGAGAACTC 57.045 36.000 10.02 0.00 42.88 3.01
3349 3408 2.587247 GGAGACTGCTGGGCTGTGA 61.587 63.158 6.77 0.00 40.59 3.58
3364 3423 2.555227 GCTGTGATCAGGGAAGGGAAAA 60.555 50.000 0.00 0.00 41.57 2.29
3369 3428 4.528206 GTGATCAGGGAAGGGAAAAACAAT 59.472 41.667 0.00 0.00 0.00 2.71
3389 3448 0.755686 GGAGAGGAAGATGGCGATGT 59.244 55.000 0.00 0.00 0.00 3.06
3436 3495 4.637276 TCTGACGGTATTGTTGTTGATGT 58.363 39.130 0.00 0.00 0.00 3.06
3515 3574 4.041740 TGGTGATCAGAAGCACGTATAC 57.958 45.455 0.00 0.00 42.80 1.47
3516 3575 3.445805 TGGTGATCAGAAGCACGTATACA 59.554 43.478 0.00 0.00 42.80 2.29
3531 3590 3.804325 CGTATACAATTCTGCTCCCTGTG 59.196 47.826 3.32 0.00 0.00 3.66
3571 3630 4.012374 TCCAACCTGATGAATTGCTCTTC 58.988 43.478 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.054941 AGTCACATGTTAGATTGTTGTCACA 58.945 36.000 0.00 0.00 0.00 3.58
1 2 6.545504 AGTCACATGTTAGATTGTTGTCAC 57.454 37.500 0.00 0.00 0.00 3.67
2 3 6.873605 CCTAGTCACATGTTAGATTGTTGTCA 59.126 38.462 0.00 0.00 0.00 3.58
3 4 7.097192 TCCTAGTCACATGTTAGATTGTTGTC 58.903 38.462 0.00 0.00 0.00 3.18
4 5 7.004555 TCCTAGTCACATGTTAGATTGTTGT 57.995 36.000 0.00 0.00 0.00 3.32
5 6 6.036517 GCTCCTAGTCACATGTTAGATTGTTG 59.963 42.308 0.00 0.00 0.00 3.33
6 7 6.109359 GCTCCTAGTCACATGTTAGATTGTT 58.891 40.000 0.00 0.00 0.00 2.83
7 8 5.187772 TGCTCCTAGTCACATGTTAGATTGT 59.812 40.000 0.00 0.00 0.00 2.71
8 9 5.664457 TGCTCCTAGTCACATGTTAGATTG 58.336 41.667 0.00 0.00 0.00 2.67
9 10 5.939764 TGCTCCTAGTCACATGTTAGATT 57.060 39.130 0.00 0.00 0.00 2.40
10 11 5.939764 TTGCTCCTAGTCACATGTTAGAT 57.060 39.130 0.00 0.00 0.00 1.98
11 12 5.738619 TTTGCTCCTAGTCACATGTTAGA 57.261 39.130 0.00 0.00 0.00 2.10
12 13 5.352569 CCTTTTGCTCCTAGTCACATGTTAG 59.647 44.000 0.00 0.00 0.00 2.34
13 14 5.012664 TCCTTTTGCTCCTAGTCACATGTTA 59.987 40.000 0.00 0.00 0.00 2.41
14 15 4.074970 CCTTTTGCTCCTAGTCACATGTT 58.925 43.478 0.00 0.00 0.00 2.71
15 16 3.327757 TCCTTTTGCTCCTAGTCACATGT 59.672 43.478 0.00 0.00 0.00 3.21
16 17 3.942829 TCCTTTTGCTCCTAGTCACATG 58.057 45.455 0.00 0.00 0.00 3.21
17 18 4.640771 TTCCTTTTGCTCCTAGTCACAT 57.359 40.909 0.00 0.00 0.00 3.21
18 19 4.640771 ATTCCTTTTGCTCCTAGTCACA 57.359 40.909 0.00 0.00 0.00 3.58
19 20 7.448748 TTTAATTCCTTTTGCTCCTAGTCAC 57.551 36.000 0.00 0.00 0.00 3.67
20 21 8.650143 AATTTAATTCCTTTTGCTCCTAGTCA 57.350 30.769 0.00 0.00 0.00 3.41
68 69 9.283768 TGCTTCAAACTCTAGATTTGTGAATAA 57.716 29.630 18.74 10.25 38.08 1.40
69 70 8.846943 TGCTTCAAACTCTAGATTTGTGAATA 57.153 30.769 18.74 10.68 38.08 1.75
70 71 7.750229 TGCTTCAAACTCTAGATTTGTGAAT 57.250 32.000 18.74 0.00 38.08 2.57
71 72 7.566760 TTGCTTCAAACTCTAGATTTGTGAA 57.433 32.000 18.74 16.32 38.08 3.18
72 73 7.566760 TTTGCTTCAAACTCTAGATTTGTGA 57.433 32.000 18.74 12.11 38.08 3.58
73 74 8.807667 AATTTGCTTCAAACTCTAGATTTGTG 57.192 30.769 18.74 15.42 36.13 3.33
74 75 9.252962 CAAATTTGCTTCAAACTCTAGATTTGT 57.747 29.630 18.74 3.31 36.13 2.83
75 76 9.467258 TCAAATTTGCTTCAAACTCTAGATTTG 57.533 29.630 13.54 15.72 36.13 2.32
77 78 9.468532 GTTCAAATTTGCTTCAAACTCTAGATT 57.531 29.630 13.54 0.00 36.13 2.40
78 79 8.632679 TGTTCAAATTTGCTTCAAACTCTAGAT 58.367 29.630 13.54 0.00 36.13 1.98
79 80 7.995289 TGTTCAAATTTGCTTCAAACTCTAGA 58.005 30.769 13.54 0.00 36.13 2.43
80 81 8.633075 TTGTTCAAATTTGCTTCAAACTCTAG 57.367 30.769 13.54 0.00 36.13 2.43
81 82 8.994429 TTTGTTCAAATTTGCTTCAAACTCTA 57.006 26.923 13.54 1.56 36.13 2.43
82 83 7.903995 TTTGTTCAAATTTGCTTCAAACTCT 57.096 28.000 13.54 0.00 36.13 3.24
83 84 9.213819 GAATTTGTTCAAATTTGCTTCAAACTC 57.786 29.630 23.45 20.70 36.13 3.01
84 85 8.728833 TGAATTTGTTCAAATTTGCTTCAAACT 58.271 25.926 23.45 18.21 36.13 2.66
85 86 8.892887 TGAATTTGTTCAAATTTGCTTCAAAC 57.107 26.923 23.45 18.06 36.13 2.93
86 87 9.903682 TTTGAATTTGTTCAAATTTGCTTCAAA 57.096 22.222 23.32 23.32 43.58 2.69
105 106 9.743057 TGTGTCATTAGTTTTCGAATTTGAATT 57.257 25.926 8.97 1.75 0.00 2.17
106 107 9.743057 TTGTGTCATTAGTTTTCGAATTTGAAT 57.257 25.926 8.97 0.00 0.00 2.57
107 108 9.574458 TTTGTGTCATTAGTTTTCGAATTTGAA 57.426 25.926 3.86 3.86 0.00 2.69
108 109 9.015577 GTTTGTGTCATTAGTTTTCGAATTTGA 57.984 29.630 0.00 0.00 0.00 2.69
109 110 8.802856 TGTTTGTGTCATTAGTTTTCGAATTTG 58.197 29.630 0.00 0.00 0.00 2.32
110 111 8.918961 TGTTTGTGTCATTAGTTTTCGAATTT 57.081 26.923 0.00 0.00 0.00 1.82
111 112 8.402472 TCTGTTTGTGTCATTAGTTTTCGAATT 58.598 29.630 0.00 0.00 0.00 2.17
112 113 7.925993 TCTGTTTGTGTCATTAGTTTTCGAAT 58.074 30.769 0.00 0.00 0.00 3.34
113 114 7.310072 TCTGTTTGTGTCATTAGTTTTCGAA 57.690 32.000 0.00 0.00 0.00 3.71
114 115 6.912203 TCTGTTTGTGTCATTAGTTTTCGA 57.088 33.333 0.00 0.00 0.00 3.71
115 116 7.696453 AGTTTCTGTTTGTGTCATTAGTTTTCG 59.304 33.333 0.00 0.00 0.00 3.46
116 117 8.911247 AGTTTCTGTTTGTGTCATTAGTTTTC 57.089 30.769 0.00 0.00 0.00 2.29
118 119 9.391006 TCTAGTTTCTGTTTGTGTCATTAGTTT 57.609 29.630 0.00 0.00 0.00 2.66
119 120 8.827677 GTCTAGTTTCTGTTTGTGTCATTAGTT 58.172 33.333 0.00 0.00 0.00 2.24
120 121 7.985184 TGTCTAGTTTCTGTTTGTGTCATTAGT 59.015 33.333 0.00 0.00 0.00 2.24
121 122 8.365399 TGTCTAGTTTCTGTTTGTGTCATTAG 57.635 34.615 0.00 0.00 0.00 1.73
122 123 8.725405 TTGTCTAGTTTCTGTTTGTGTCATTA 57.275 30.769 0.00 0.00 0.00 1.90
123 124 7.624360 TTGTCTAGTTTCTGTTTGTGTCATT 57.376 32.000 0.00 0.00 0.00 2.57
124 125 7.624360 TTTGTCTAGTTTCTGTTTGTGTCAT 57.376 32.000 0.00 0.00 0.00 3.06
125 126 7.441890 TTTTGTCTAGTTTCTGTTTGTGTCA 57.558 32.000 0.00 0.00 0.00 3.58
126 127 8.798153 CAATTTTGTCTAGTTTCTGTTTGTGTC 58.202 33.333 0.00 0.00 0.00 3.67
127 128 8.303876 ACAATTTTGTCTAGTTTCTGTTTGTGT 58.696 29.630 0.00 0.00 36.50 3.72
128 129 8.586273 CACAATTTTGTCTAGTTTCTGTTTGTG 58.414 33.333 0.00 0.00 39.91 3.33
129 130 8.519526 TCACAATTTTGTCTAGTTTCTGTTTGT 58.480 29.630 0.00 0.00 39.91 2.83
130 131 8.909708 TCACAATTTTGTCTAGTTTCTGTTTG 57.090 30.769 0.00 0.00 39.91 2.93
132 133 9.736023 GATTCACAATTTTGTCTAGTTTCTGTT 57.264 29.630 0.00 0.00 39.91 3.16
133 134 9.125026 AGATTCACAATTTTGTCTAGTTTCTGT 57.875 29.630 0.00 0.00 39.91 3.41
138 139 9.846248 GCATTAGATTCACAATTTTGTCTAGTT 57.154 29.630 0.00 0.00 39.91 2.24
139 140 9.013229 TGCATTAGATTCACAATTTTGTCTAGT 57.987 29.630 0.00 0.00 39.91 2.57
140 141 9.844790 TTGCATTAGATTCACAATTTTGTCTAG 57.155 29.630 0.00 0.00 39.91 2.43
142 143 9.545105 TTTTGCATTAGATTCACAATTTTGTCT 57.455 25.926 0.00 0.00 39.91 3.41
240 241 6.206829 CGGGACTAAAGGAGTTCTGAATTTTT 59.793 38.462 0.00 0.00 42.23 1.94
241 242 5.705905 CGGGACTAAAGGAGTTCTGAATTTT 59.294 40.000 0.00 0.00 42.23 1.82
242 243 5.246307 CGGGACTAAAGGAGTTCTGAATTT 58.754 41.667 0.00 0.00 42.23 1.82
243 244 4.323562 CCGGGACTAAAGGAGTTCTGAATT 60.324 45.833 0.00 0.00 42.23 2.17
244 245 3.197983 CCGGGACTAAAGGAGTTCTGAAT 59.802 47.826 0.00 0.00 42.23 2.57
245 246 2.565834 CCGGGACTAAAGGAGTTCTGAA 59.434 50.000 0.00 0.00 42.23 3.02
246 247 2.176889 CCGGGACTAAAGGAGTTCTGA 58.823 52.381 0.00 0.00 42.23 3.27
247 248 1.900486 ACCGGGACTAAAGGAGTTCTG 59.100 52.381 6.32 0.00 39.57 3.02
248 249 2.302157 CAACCGGGACTAAAGGAGTTCT 59.698 50.000 6.32 0.00 39.06 3.01
249 250 2.301009 TCAACCGGGACTAAAGGAGTTC 59.699 50.000 6.32 0.00 39.06 3.01
250 251 2.332117 TCAACCGGGACTAAAGGAGTT 58.668 47.619 6.32 0.00 39.06 3.01
251 252 2.019807 TCAACCGGGACTAAAGGAGT 57.980 50.000 6.32 0.00 42.90 3.85
252 253 2.420129 CCATCAACCGGGACTAAAGGAG 60.420 54.545 6.32 0.00 0.00 3.69
253 254 1.557832 CCATCAACCGGGACTAAAGGA 59.442 52.381 6.32 0.00 0.00 3.36
254 255 2.017113 GCCATCAACCGGGACTAAAGG 61.017 57.143 6.32 0.00 0.00 3.11
255 256 1.065418 AGCCATCAACCGGGACTAAAG 60.065 52.381 6.32 0.00 0.00 1.85
256 257 0.988832 AGCCATCAACCGGGACTAAA 59.011 50.000 6.32 0.00 0.00 1.85
257 258 0.539986 GAGCCATCAACCGGGACTAA 59.460 55.000 6.32 0.00 0.00 2.24
258 259 1.335132 GGAGCCATCAACCGGGACTA 61.335 60.000 6.32 0.00 0.00 2.59
259 260 2.670148 GGAGCCATCAACCGGGACT 61.670 63.158 6.32 0.00 0.00 3.85
260 261 2.124695 GGAGCCATCAACCGGGAC 60.125 66.667 6.32 0.00 0.00 4.46
261 262 2.227757 TTGGAGCCATCAACCGGGA 61.228 57.895 6.32 0.00 0.00 5.14
262 263 2.046285 GTTGGAGCCATCAACCGGG 61.046 63.158 6.32 0.00 38.71 5.73
263 264 3.590824 GTTGGAGCCATCAACCGG 58.409 61.111 0.00 0.00 38.71 5.28
266 267 2.046285 CCCGGTTGGAGCCATCAAC 61.046 63.158 0.00 6.03 42.53 3.18
267 268 2.354729 CCCGGTTGGAGCCATCAA 59.645 61.111 0.00 0.00 37.49 2.57
268 269 2.933287 ACCCGGTTGGAGCCATCA 60.933 61.111 0.00 0.00 37.49 3.07
269 270 2.438434 CACCCGGTTGGAGCCATC 60.438 66.667 0.00 0.00 37.49 3.51
270 271 2.933287 TCACCCGGTTGGAGCCAT 60.933 61.111 0.00 0.00 37.49 4.40
271 272 3.636231 CTCACCCGGTTGGAGCCA 61.636 66.667 0.00 0.00 37.49 4.75
272 273 3.316573 CTCTCACCCGGTTGGAGCC 62.317 68.421 0.00 0.00 37.49 4.70
273 274 1.827399 TTCTCTCACCCGGTTGGAGC 61.827 60.000 11.11 0.00 37.49 4.70
274 275 0.247736 CTTCTCTCACCCGGTTGGAG 59.752 60.000 10.07 10.07 37.49 3.86
275 276 0.178944 TCTTCTCTCACCCGGTTGGA 60.179 55.000 0.00 0.00 37.49 3.53
276 277 0.905357 ATCTTCTCTCACCCGGTTGG 59.095 55.000 0.00 0.00 41.37 3.77
277 278 2.009042 GCATCTTCTCTCACCCGGTTG 61.009 57.143 0.00 0.00 0.00 3.77
278 279 0.250513 GCATCTTCTCTCACCCGGTT 59.749 55.000 0.00 0.00 0.00 4.44
279 280 1.901085 GCATCTTCTCTCACCCGGT 59.099 57.895 0.00 0.00 0.00 5.28
280 281 1.227089 CGCATCTTCTCTCACCCGG 60.227 63.158 0.00 0.00 0.00 5.73
281 282 0.526524 GTCGCATCTTCTCTCACCCG 60.527 60.000 0.00 0.00 0.00 5.28
297 298 2.065993 AGTTGTCATTGTCCTCGTCG 57.934 50.000 0.00 0.00 0.00 5.12
320 328 5.499004 TCAGGCTACAACTTAGGTGAAAT 57.501 39.130 3.50 0.00 0.00 2.17
329 337 2.699954 CGTGGATTCAGGCTACAACTT 58.300 47.619 0.00 0.00 0.00 2.66
363 371 3.319137 TTGTAGCAGTTGTGGCTCTAG 57.681 47.619 0.00 0.00 42.62 2.43
377 385 2.365617 TGGCCTAGTAGCTCATTGTAGC 59.634 50.000 3.32 0.00 43.11 3.58
398 407 3.077556 CCAGGCTGCTAGGACCGT 61.078 66.667 9.56 0.00 0.00 4.83
399 408 3.854669 CCCAGGCTGCTAGGACCG 61.855 72.222 9.56 0.00 0.00 4.79
435 444 7.651808 ACAAAAATGATGAAAACTGATCGTCT 58.348 30.769 0.00 0.00 34.58 4.18
440 449 8.981647 GCTACAACAAAAATGATGAAAACTGAT 58.018 29.630 0.00 0.00 0.00 2.90
453 462 7.275888 TCACATCTCTTGCTACAACAAAAAT 57.724 32.000 0.00 0.00 0.00 1.82
457 466 5.610398 TCTTCACATCTCTTGCTACAACAA 58.390 37.500 0.00 0.00 0.00 2.83
487 496 4.956075 ACAATGAATATGGGGTGGAGAAAC 59.044 41.667 0.00 0.00 0.00 2.78
490 499 4.229353 TCAACAATGAATATGGGGTGGAGA 59.771 41.667 0.00 0.00 30.99 3.71
545 557 8.746052 TTTCTCCGTTCCATATTAATTGTCAT 57.254 30.769 0.00 0.00 0.00 3.06
605 617 7.163441 GGCGTTATCAGGGTCCTAAATAAATA 58.837 38.462 5.92 0.00 0.00 1.40
658 671 8.977505 ACTAAAAATGTCATGAAAAACATTCGG 58.022 29.630 10.04 5.17 43.45 4.30
670 683 7.359262 TCCTCACGTTACTAAAAATGTCATG 57.641 36.000 0.00 0.00 0.00 3.07
697 710 3.911964 CCATGCGTGTAAACTAAACTTGC 59.088 43.478 4.96 0.00 0.00 4.01
709 722 2.675844 GCACAGATTTACCATGCGTGTA 59.324 45.455 4.96 0.00 0.00 2.90
719 732 9.226345 GCAAAAATATACTGAGCACAGATTTAC 57.774 33.333 18.54 4.12 46.03 2.01
726 739 8.560355 TTTCTAGCAAAAATATACTGAGCACA 57.440 30.769 0.00 0.00 0.00 4.57
762 776 6.583806 CAGAGGATTGCAAATTTAGTTGACAC 59.416 38.462 1.71 0.00 0.00 3.67
883 905 6.627508 GCGAATAAGAACTGTCTTCTCCCTTA 60.628 42.308 0.00 0.00 43.30 2.69
894 916 0.989890 GACGCGCGAATAAGAACTGT 59.010 50.000 39.36 9.23 0.00 3.55
909 938 1.439679 AACGGAAATCAGAAGGACGC 58.560 50.000 0.00 0.00 0.00 5.19
917 946 9.922305 GATAGAGAAATTACAAACGGAAATCAG 57.078 33.333 0.00 0.00 0.00 2.90
947 979 1.548269 CCGGCATGGTATTTGGTGTTT 59.452 47.619 0.00 0.00 0.00 2.83
948 980 1.181786 CCGGCATGGTATTTGGTGTT 58.818 50.000 0.00 0.00 0.00 3.32
949 981 2.880770 CCGGCATGGTATTTGGTGT 58.119 52.632 0.00 0.00 0.00 4.16
1814 1846 8.333908 GCAATTATATCATCGAATAGCTTCTGG 58.666 37.037 0.00 0.00 0.00 3.86
1934 1966 3.147595 CCGGCGACCTCCATCTCA 61.148 66.667 9.30 0.00 0.00 3.27
1949 1981 2.359354 TCATTCGGTTGCACCCCG 60.359 61.111 16.09 16.09 46.83 5.73
1958 1990 4.159135 ACTGAATACGTAACCTCATTCGGT 59.841 41.667 12.92 12.92 40.48 4.69
2057 2089 1.203994 AGTGGTGTATCTGGCGTGTAC 59.796 52.381 0.00 0.00 0.00 2.90
2069 2101 0.613260 CCTTAGCAGCCAGTGGTGTA 59.387 55.000 11.74 1.57 42.04 2.90
2227 2259 0.480252 AAACAGCTTCCTTGCCTCCT 59.520 50.000 0.00 0.00 0.00 3.69
2386 2418 3.431922 TGATAAAGGCCTCGTAAGTCG 57.568 47.619 5.23 0.00 41.41 4.18
2433 2465 3.473113 AAATACTGTGGCCCCTTCATT 57.527 42.857 0.00 0.00 0.00 2.57
2445 2477 6.013725 TTGGTCACCATCTCAGTAAATACTGT 60.014 38.462 17.60 0.00 42.85 3.55
2548 2580 3.622612 GGCAGCAGTTTCAACAATTTTGT 59.377 39.130 0.00 0.00 44.72 2.83
2559 2591 2.030805 CACCACTTAAGGCAGCAGTTTC 60.031 50.000 7.53 0.00 0.00 2.78
2597 2629 5.931146 CCTGATAAAGATCTCCCAAGAATCG 59.069 44.000 0.00 0.00 34.49 3.34
2684 2716 2.629656 GCACACCACACCTCATGGC 61.630 63.158 0.00 0.00 41.31 4.40
2710 2744 3.960102 TGATCAGTTTTGGGCTTTGAACT 59.040 39.130 0.00 0.00 32.89 3.01
2796 2840 6.356556 TCAGTGGAAGAATGTTTCAGAGAAA 58.643 36.000 0.00 0.00 0.00 2.52
2807 2851 5.334105 CGGTGTTAGTTTCAGTGGAAGAATG 60.334 44.000 0.00 0.00 33.82 2.67
2894 2942 1.964552 CCCTCCATGAGCTCATCAAC 58.035 55.000 26.44 0.00 42.53 3.18
3101 3150 6.428159 AGTTCAGCAACCAAGAACACTATTAG 59.572 38.462 0.00 0.00 43.00 1.73
3102 3151 6.204688 CAGTTCAGCAACCAAGAACACTATTA 59.795 38.462 0.00 0.00 43.00 0.98
3106 3155 2.684881 CAGTTCAGCAACCAAGAACACT 59.315 45.455 0.00 0.00 43.00 3.55
3132 3181 7.680730 AGAACTGAATACAGAGTAACAATGGT 58.319 34.615 0.00 0.00 46.03 3.55
3215 3273 3.260884 TGAACCACATCCTCTTCTACACC 59.739 47.826 0.00 0.00 0.00 4.16
3235 3293 4.141181 ACTTCAATATAGGGCAAGCCATGA 60.141 41.667 13.87 4.45 37.98 3.07
3302 3360 0.177836 CATGGGGACGAGCACATACA 59.822 55.000 0.00 0.00 0.00 2.29
3349 3408 3.840078 CCATTGTTTTTCCCTTCCCTGAT 59.160 43.478 0.00 0.00 0.00 2.90
3364 3423 2.681976 CGCCATCTTCCTCTCCATTGTT 60.682 50.000 0.00 0.00 0.00 2.83
3369 3428 0.755079 CATCGCCATCTTCCTCTCCA 59.245 55.000 0.00 0.00 0.00 3.86
3389 3448 7.837863 AGATAACTCTAAATGGTCGTCAGAAA 58.162 34.615 0.00 0.00 0.00 2.52
3436 3495 6.931838 ACAAAGAGGAATACACTCGTATCAA 58.068 36.000 0.00 0.00 37.34 2.57
3472 3531 6.445786 ACCAGGGTCCTTTTTATCACATACTA 59.554 38.462 0.00 0.00 0.00 1.82
3473 3532 5.253096 ACCAGGGTCCTTTTTATCACATACT 59.747 40.000 0.00 0.00 0.00 2.12
3474 3533 5.357032 CACCAGGGTCCTTTTTATCACATAC 59.643 44.000 0.00 0.00 0.00 2.39
3571 3630 7.011857 GGGAAGCTTCTATGACATTGAGTTTAG 59.988 40.741 25.05 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.