Multiple sequence alignment - TraesCS7D01G047300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G047300 chr7D 100.000 2741 0 0 1 2741 24371950 24369210 0.000000e+00 5062.0
1 TraesCS7D01G047300 chr7D 88.587 736 50 5 631 1344 43482416 43483139 0.000000e+00 863.0
2 TraesCS7D01G047300 chr7D 80.817 881 139 17 879 1741 127342343 127341475 0.000000e+00 664.0
3 TraesCS7D01G047300 chr7D 87.238 525 25 18 120 633 43481862 43482355 6.630000e-156 560.0
4 TraesCS7D01G047300 chr7D 82.883 555 37 19 1797 2318 43483472 43484001 1.940000e-121 446.0
5 TraesCS7D01G047300 chr7A 94.705 1303 47 8 631 1920 24860257 24858964 0.000000e+00 2004.0
6 TraesCS7D01G047300 chr7A 92.035 1268 70 15 631 1880 24993473 24994727 0.000000e+00 1753.0
7 TraesCS7D01G047300 chr7A 88.326 711 55 7 631 1324 43445518 43446217 0.000000e+00 828.0
8 TraesCS7D01G047300 chr7A 95.040 504 17 2 138 633 24860818 24860315 0.000000e+00 785.0
9 TraesCS7D01G047300 chr7A 90.485 557 40 3 631 1174 43468055 43468611 0.000000e+00 723.0
10 TraesCS7D01G047300 chr7A 81.350 874 132 19 879 1741 128149604 128148751 0.000000e+00 682.0
11 TraesCS7D01G047300 chr7A 86.006 636 48 15 1769 2366 43446275 43446907 0.000000e+00 643.0
12 TraesCS7D01G047300 chr7A 87.669 519 31 14 120 633 43444967 43445457 8.510000e-160 573.0
13 TraesCS7D01G047300 chr7A 84.628 605 56 13 1794 2362 43479092 43479695 3.960000e-158 568.0
14 TraesCS7D01G047300 chr7A 84.168 499 43 22 154 633 24992934 24993415 4.160000e-123 451.0
15 TraesCS7D01G047300 chr7A 80.719 306 31 15 331 633 43467714 43467994 2.140000e-51 213.0
16 TraesCS7D01G047300 chr7A 83.186 226 20 8 120 334 45680881 45681099 1.000000e-44 191.0
17 TraesCS7D01G047300 chr7A 71.944 360 91 9 1375 1727 25709955 25710311 2.250000e-16 97.1
18 TraesCS7D01G047300 chrUn 90.615 1268 79 16 631 1881 90140717 90139473 0.000000e+00 1646.0
19 TraesCS7D01G047300 chrUn 83.579 542 45 20 120 633 90141300 90140775 4.130000e-128 468.0
20 TraesCS7D01G047300 chrUn 83.186 226 20 10 120 334 331997123 331996905 1.000000e-44 191.0
21 TraesCS7D01G047300 chrUn 83.186 226 20 8 120 334 375431667 375431885 1.000000e-44 191.0
22 TraesCS7D01G047300 chr7B 81.017 885 130 22 879 1741 89001791 89002659 0.000000e+00 669.0
23 TraesCS7D01G047300 chr4A 91.453 468 19 3 103 567 707238211 707237762 8.340000e-175 623.0
24 TraesCS7D01G047300 chr4A 90.698 344 18 7 1945 2279 652024464 652024802 1.940000e-121 446.0
25 TraesCS7D01G047300 chr4A 94.681 188 10 0 631 818 707236285 707236098 2.670000e-75 292.0
26 TraesCS7D01G047300 chr6B 97.143 35 1 0 1 35 648618949 648618983 2.950000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G047300 chr7D 24369210 24371950 2740 True 5062.000000 5062 100.000000 1 2741 1 chr7D.!!$R1 2740
1 TraesCS7D01G047300 chr7D 127341475 127342343 868 True 664.000000 664 80.817000 879 1741 1 chr7D.!!$R2 862
2 TraesCS7D01G047300 chr7D 43481862 43484001 2139 False 623.000000 863 86.236000 120 2318 3 chr7D.!!$F1 2198
3 TraesCS7D01G047300 chr7A 24858964 24860818 1854 True 1394.500000 2004 94.872500 138 1920 2 chr7A.!!$R2 1782
4 TraesCS7D01G047300 chr7A 24992934 24994727 1793 False 1102.000000 1753 88.101500 154 1880 2 chr7A.!!$F4 1726
5 TraesCS7D01G047300 chr7A 128148751 128149604 853 True 682.000000 682 81.350000 879 1741 1 chr7A.!!$R1 862
6 TraesCS7D01G047300 chr7A 43444967 43446907 1940 False 681.333333 828 87.333667 120 2366 3 chr7A.!!$F5 2246
7 TraesCS7D01G047300 chr7A 43479092 43479695 603 False 568.000000 568 84.628000 1794 2362 1 chr7A.!!$F2 568
8 TraesCS7D01G047300 chr7A 43467714 43468611 897 False 468.000000 723 85.602000 331 1174 2 chr7A.!!$F6 843
9 TraesCS7D01G047300 chrUn 90139473 90141300 1827 True 1057.000000 1646 87.097000 120 1881 2 chrUn.!!$R2 1761
10 TraesCS7D01G047300 chr7B 89001791 89002659 868 False 669.000000 669 81.017000 879 1741 1 chr7B.!!$F1 862
11 TraesCS7D01G047300 chr4A 707236098 707238211 2113 True 457.500000 623 93.067000 103 818 2 chr4A.!!$R1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.250553 TCCCTTAAAGCCCACACGTG 60.251 55.0 15.48 15.48 0.0 4.49 F
36 37 0.511221 CTTAAAGCCCACACGTGTCG 59.489 55.0 20.49 13.06 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1172 2708 1.028330 TACGCAGTAGGACCGTCTGG 61.028 60.0 16.62 11.04 45.11 3.86 R
1934 3799 2.363306 AAAGCCACACTGACATCCAA 57.637 45.0 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.402238 AATGTGTGGCCAGATCCCT 58.598 52.632 5.11 0.00 0.00 4.20
19 20 0.706433 AATGTGTGGCCAGATCCCTT 59.294 50.000 5.11 0.00 0.00 3.95
20 21 1.595311 ATGTGTGGCCAGATCCCTTA 58.405 50.000 5.11 0.00 0.00 2.69
21 22 1.367346 TGTGTGGCCAGATCCCTTAA 58.633 50.000 5.11 0.00 0.00 1.85
22 23 1.707989 TGTGTGGCCAGATCCCTTAAA 59.292 47.619 5.11 0.00 0.00 1.52
23 24 2.290896 TGTGTGGCCAGATCCCTTAAAG 60.291 50.000 5.11 0.00 0.00 1.85
24 25 1.340991 TGTGGCCAGATCCCTTAAAGC 60.341 52.381 5.11 0.00 0.00 3.51
25 26 0.258774 TGGCCAGATCCCTTAAAGCC 59.741 55.000 0.00 0.00 39.41 4.35
26 27 0.468214 GGCCAGATCCCTTAAAGCCC 60.468 60.000 0.00 0.00 32.68 5.19
27 28 0.258774 GCCAGATCCCTTAAAGCCCA 59.741 55.000 0.00 0.00 0.00 5.36
28 29 2.024306 GCCAGATCCCTTAAAGCCCAC 61.024 57.143 0.00 0.00 0.00 4.61
29 30 1.284785 CCAGATCCCTTAAAGCCCACA 59.715 52.381 0.00 0.00 0.00 4.17
30 31 2.369394 CAGATCCCTTAAAGCCCACAC 58.631 52.381 0.00 0.00 0.00 3.82
31 32 1.065418 AGATCCCTTAAAGCCCACACG 60.065 52.381 0.00 0.00 0.00 4.49
32 33 0.696501 ATCCCTTAAAGCCCACACGT 59.303 50.000 0.00 0.00 0.00 4.49
33 34 0.250553 TCCCTTAAAGCCCACACGTG 60.251 55.000 15.48 15.48 0.00 4.49
34 35 0.536460 CCCTTAAAGCCCACACGTGT 60.536 55.000 17.22 17.22 0.00 4.49
35 36 0.872388 CCTTAAAGCCCACACGTGTC 59.128 55.000 20.49 8.11 0.00 3.67
36 37 0.511221 CTTAAAGCCCACACGTGTCG 59.489 55.000 20.49 13.06 0.00 4.35
37 38 1.500512 TTAAAGCCCACACGTGTCGC 61.501 55.000 20.49 22.33 0.00 5.19
47 48 3.856508 CGTGTCGCGTCCATCTTT 58.143 55.556 5.77 0.00 35.54 2.52
48 49 2.150424 CGTGTCGCGTCCATCTTTT 58.850 52.632 5.77 0.00 35.54 2.27
49 50 1.342555 CGTGTCGCGTCCATCTTTTA 58.657 50.000 5.77 0.00 35.54 1.52
50 51 1.924524 CGTGTCGCGTCCATCTTTTAT 59.075 47.619 5.77 0.00 35.54 1.40
51 52 2.347452 CGTGTCGCGTCCATCTTTTATT 59.653 45.455 5.77 0.00 35.54 1.40
52 53 3.548668 CGTGTCGCGTCCATCTTTTATTA 59.451 43.478 5.77 0.00 35.54 0.98
53 54 4.547587 CGTGTCGCGTCCATCTTTTATTAC 60.548 45.833 5.77 0.00 35.54 1.89
54 55 4.327898 GTGTCGCGTCCATCTTTTATTACA 59.672 41.667 5.77 0.00 0.00 2.41
55 56 5.006358 GTGTCGCGTCCATCTTTTATTACAT 59.994 40.000 5.77 0.00 0.00 2.29
56 57 5.233476 TGTCGCGTCCATCTTTTATTACATC 59.767 40.000 5.77 0.00 0.00 3.06
57 58 5.462398 GTCGCGTCCATCTTTTATTACATCT 59.538 40.000 5.77 0.00 0.00 2.90
58 59 5.462068 TCGCGTCCATCTTTTATTACATCTG 59.538 40.000 5.77 0.00 0.00 2.90
59 60 5.462068 CGCGTCCATCTTTTATTACATCTGA 59.538 40.000 0.00 0.00 0.00 3.27
60 61 6.346120 CGCGTCCATCTTTTATTACATCTGAG 60.346 42.308 0.00 0.00 0.00 3.35
61 62 6.564873 GCGTCCATCTTTTATTACATCTGAGC 60.565 42.308 0.00 0.00 0.00 4.26
62 63 6.346120 CGTCCATCTTTTATTACATCTGAGCG 60.346 42.308 0.00 0.00 0.00 5.03
63 64 5.991606 TCCATCTTTTATTACATCTGAGCGG 59.008 40.000 0.00 0.00 0.00 5.52
64 65 5.760253 CCATCTTTTATTACATCTGAGCGGT 59.240 40.000 0.00 0.00 0.00 5.68
65 66 6.260936 CCATCTTTTATTACATCTGAGCGGTT 59.739 38.462 0.00 0.00 0.00 4.44
66 67 6.903883 TCTTTTATTACATCTGAGCGGTTC 57.096 37.500 0.00 0.00 0.00 3.62
67 68 5.518847 TCTTTTATTACATCTGAGCGGTTCG 59.481 40.000 0.00 0.00 0.00 3.95
68 69 2.961526 ATTACATCTGAGCGGTTCGT 57.038 45.000 0.00 0.00 0.00 3.85
69 70 2.273370 TTACATCTGAGCGGTTCGTC 57.727 50.000 0.00 0.00 0.00 4.20
70 71 1.460504 TACATCTGAGCGGTTCGTCT 58.539 50.000 0.00 0.00 0.00 4.18
71 72 0.603569 ACATCTGAGCGGTTCGTCTT 59.396 50.000 0.00 0.00 0.00 3.01
72 73 1.272781 CATCTGAGCGGTTCGTCTTC 58.727 55.000 0.00 0.00 0.00 2.87
73 74 1.135257 CATCTGAGCGGTTCGTCTTCT 60.135 52.381 0.00 0.00 0.00 2.85
74 75 1.817357 TCTGAGCGGTTCGTCTTCTA 58.183 50.000 0.00 0.00 0.00 2.10
75 76 2.366533 TCTGAGCGGTTCGTCTTCTAT 58.633 47.619 0.00 0.00 0.00 1.98
76 77 2.355132 TCTGAGCGGTTCGTCTTCTATC 59.645 50.000 0.00 0.00 0.00 2.08
77 78 1.063616 TGAGCGGTTCGTCTTCTATCG 59.936 52.381 0.00 0.00 0.00 2.92
78 79 1.063764 GAGCGGTTCGTCTTCTATCGT 59.936 52.381 0.00 0.00 0.00 3.73
79 80 1.471684 AGCGGTTCGTCTTCTATCGTT 59.528 47.619 0.00 0.00 0.00 3.85
80 81 2.094854 AGCGGTTCGTCTTCTATCGTTT 60.095 45.455 0.00 0.00 0.00 3.60
81 82 2.665052 GCGGTTCGTCTTCTATCGTTTT 59.335 45.455 0.00 0.00 0.00 2.43
82 83 3.853671 GCGGTTCGTCTTCTATCGTTTTA 59.146 43.478 0.00 0.00 0.00 1.52
83 84 4.324402 GCGGTTCGTCTTCTATCGTTTTAA 59.676 41.667 0.00 0.00 0.00 1.52
84 85 5.005107 GCGGTTCGTCTTCTATCGTTTTAAT 59.995 40.000 0.00 0.00 0.00 1.40
85 86 6.197096 GCGGTTCGTCTTCTATCGTTTTAATA 59.803 38.462 0.00 0.00 0.00 0.98
86 87 7.253750 GCGGTTCGTCTTCTATCGTTTTAATAA 60.254 37.037 0.00 0.00 0.00 1.40
87 88 8.749499 CGGTTCGTCTTCTATCGTTTTAATAAT 58.251 33.333 0.00 0.00 0.00 1.28
397 426 2.747686 GAGACCGGCCACTTGGAA 59.252 61.111 0.00 0.00 37.39 3.53
532 587 2.673200 ATGCAGTGGCTCCATCGGT 61.673 57.895 0.00 0.00 41.91 4.69
662 2140 1.004560 CACGTGCTGATGACCCAGT 60.005 57.895 0.82 0.00 36.57 4.00
688 2172 1.302511 CGGTCCCAGTTCCACCTTG 60.303 63.158 0.00 0.00 0.00 3.61
859 2358 1.559065 GGATCCCCTTGTTCGACCCA 61.559 60.000 0.00 0.00 0.00 4.51
875 2374 2.661537 CAAGCACGTCGAGCACCA 60.662 61.111 16.93 0.00 0.00 4.17
1177 2713 2.486796 GGCAATGCCTTCTCCAGAC 58.513 57.895 18.47 0.00 46.69 3.51
1178 2714 1.372087 GGCAATGCCTTCTCCAGACG 61.372 60.000 18.47 0.00 46.69 4.18
1179 2715 1.372087 GCAATGCCTTCTCCAGACGG 61.372 60.000 0.00 0.00 36.62 4.79
1518 3079 2.089980 GACACCTGCTACGACTTCCTA 58.910 52.381 0.00 0.00 0.00 2.94
1563 3124 2.623915 CGTCTCCCTCGTGTTCGGT 61.624 63.158 0.00 0.00 37.69 4.69
1763 3324 1.066752 CGTCGGCGACATATTCCCA 59.933 57.895 35.62 0.00 41.33 4.37
1903 3768 5.507817 CCAGTAATAATCATGCGGCATTGTT 60.508 40.000 13.81 12.99 0.00 2.83
1920 3785 4.447138 TTGTTGTTGTAGGGGTTGATCT 57.553 40.909 0.00 0.00 0.00 2.75
1959 3832 1.879380 TGTCAGTGTGGCTTTATGTGC 59.121 47.619 0.00 0.00 0.00 4.57
1987 3861 0.103208 AAACGGCTCGCTAGGAGATG 59.897 55.000 11.19 5.82 46.23 2.90
2037 3915 0.454957 GCACAGCGCCAAACTATGTG 60.455 55.000 16.65 16.65 43.18 3.21
2039 3917 1.135972 CACAGCGCCAAACTATGTGTC 60.136 52.381 13.70 0.00 37.17 3.67
2106 3985 7.974482 TGTGAATCTCTGGCTTGATATATTG 57.026 36.000 0.00 0.00 0.00 1.90
2150 4029 2.286365 ACCTGGTTTGTGGTATGTGG 57.714 50.000 0.00 0.00 34.36 4.17
2157 4036 3.194755 GGTTTGTGGTATGTGGGGATTTC 59.805 47.826 0.00 0.00 0.00 2.17
2172 4051 4.342378 GGGGATTTCTTTTCCTTAGATGGC 59.658 45.833 0.00 0.00 33.53 4.40
2208 4088 7.386025 CGCTGGATTCTAGATCAAATGATTACA 59.614 37.037 0.55 0.00 34.37 2.41
2311 4193 5.779771 TGGGAATTAAGGATTGAGCTTTTGT 59.220 36.000 0.00 0.00 0.00 2.83
2337 4224 3.004315 ACACTTTTAGGGCAACAATCACG 59.996 43.478 0.00 0.00 39.74 4.35
2341 4228 2.570415 TAGGGCAACAATCACGGAAA 57.430 45.000 0.00 0.00 39.74 3.13
2353 4240 9.186323 CAACAATCACGGAAAAACATTTACATA 57.814 29.630 0.00 0.00 0.00 2.29
2355 4242 9.921637 ACAATCACGGAAAAACATTTACATATT 57.078 25.926 0.00 0.00 0.00 1.28
2376 4263 4.563140 TTTTTATGCTACTCCCTCCGTT 57.437 40.909 0.00 0.00 0.00 4.44
2377 4264 3.536956 TTTATGCTACTCCCTCCGTTG 57.463 47.619 0.00 0.00 0.00 4.10
2378 4265 0.750850 TATGCTACTCCCTCCGTTGC 59.249 55.000 0.00 0.00 34.48 4.17
2379 4266 0.978146 ATGCTACTCCCTCCGTTGCT 60.978 55.000 0.00 0.00 34.87 3.91
2380 4267 1.142097 GCTACTCCCTCCGTTGCTC 59.858 63.158 0.00 0.00 31.88 4.26
2381 4268 1.324005 GCTACTCCCTCCGTTGCTCT 61.324 60.000 0.00 0.00 31.88 4.09
2382 4269 1.187087 CTACTCCCTCCGTTGCTCTT 58.813 55.000 0.00 0.00 0.00 2.85
2383 4270 0.895530 TACTCCCTCCGTTGCTCTTG 59.104 55.000 0.00 0.00 0.00 3.02
2384 4271 1.122019 ACTCCCTCCGTTGCTCTTGT 61.122 55.000 0.00 0.00 0.00 3.16
2385 4272 0.895530 CTCCCTCCGTTGCTCTTGTA 59.104 55.000 0.00 0.00 0.00 2.41
2386 4273 1.482593 CTCCCTCCGTTGCTCTTGTAT 59.517 52.381 0.00 0.00 0.00 2.29
2387 4274 1.906574 TCCCTCCGTTGCTCTTGTATT 59.093 47.619 0.00 0.00 0.00 1.89
2388 4275 2.304761 TCCCTCCGTTGCTCTTGTATTT 59.695 45.455 0.00 0.00 0.00 1.40
2389 4276 3.081804 CCCTCCGTTGCTCTTGTATTTT 58.918 45.455 0.00 0.00 0.00 1.82
2390 4277 3.119849 CCCTCCGTTGCTCTTGTATTTTG 60.120 47.826 0.00 0.00 0.00 2.44
2391 4278 3.119849 CCTCCGTTGCTCTTGTATTTTGG 60.120 47.826 0.00 0.00 0.00 3.28
2392 4279 2.817258 TCCGTTGCTCTTGTATTTTGGG 59.183 45.455 0.00 0.00 0.00 4.12
2393 4280 2.817258 CCGTTGCTCTTGTATTTTGGGA 59.183 45.455 0.00 0.00 0.00 4.37
2394 4281 3.365969 CCGTTGCTCTTGTATTTTGGGAC 60.366 47.826 0.00 0.00 0.00 4.46
2395 4282 3.666902 CGTTGCTCTTGTATTTTGGGACG 60.667 47.826 0.00 0.00 0.00 4.79
2396 4283 2.432444 TGCTCTTGTATTTTGGGACGG 58.568 47.619 0.00 0.00 0.00 4.79
2397 4284 2.224670 TGCTCTTGTATTTTGGGACGGT 60.225 45.455 0.00 0.00 0.00 4.83
2398 4285 3.008157 TGCTCTTGTATTTTGGGACGGTA 59.992 43.478 0.00 0.00 0.00 4.02
2399 4286 3.621715 GCTCTTGTATTTTGGGACGGTAG 59.378 47.826 0.00 0.00 0.00 3.18
2400 4287 4.828829 CTCTTGTATTTTGGGACGGTAGT 58.171 43.478 0.00 0.00 0.00 2.73
2401 4288 5.625197 GCTCTTGTATTTTGGGACGGTAGTA 60.625 44.000 0.00 0.00 0.00 1.82
2402 4289 6.357579 TCTTGTATTTTGGGACGGTAGTAA 57.642 37.500 0.00 0.00 0.00 2.24
2403 4290 6.400568 TCTTGTATTTTGGGACGGTAGTAAG 58.599 40.000 0.00 0.00 0.00 2.34
2404 4291 5.088680 TGTATTTTGGGACGGTAGTAAGG 57.911 43.478 0.00 0.00 0.00 2.69
2405 4292 4.531732 TGTATTTTGGGACGGTAGTAAGGT 59.468 41.667 0.00 0.00 0.00 3.50
2406 4293 5.719085 TGTATTTTGGGACGGTAGTAAGGTA 59.281 40.000 0.00 0.00 0.00 3.08
2407 4294 4.535526 TTTTGGGACGGTAGTAAGGTAC 57.464 45.455 0.00 0.00 0.00 3.34
2408 4295 1.750193 TGGGACGGTAGTAAGGTACG 58.250 55.000 0.00 0.00 0.00 3.67
2409 4296 0.382158 GGGACGGTAGTAAGGTACGC 59.618 60.000 0.00 0.00 0.00 4.42
2410 4297 1.094785 GGACGGTAGTAAGGTACGCA 58.905 55.000 0.00 0.00 0.00 5.24
2411 4298 1.678101 GGACGGTAGTAAGGTACGCAT 59.322 52.381 0.00 0.00 0.00 4.73
2412 4299 2.878406 GGACGGTAGTAAGGTACGCATA 59.122 50.000 0.00 0.00 0.00 3.14
2413 4300 3.058639 GGACGGTAGTAAGGTACGCATAG 60.059 52.174 0.00 0.00 0.00 2.23
2414 4301 2.880890 ACGGTAGTAAGGTACGCATAGG 59.119 50.000 0.00 0.00 0.00 2.57
2415 4302 3.141398 CGGTAGTAAGGTACGCATAGGA 58.859 50.000 0.00 0.00 0.00 2.94
2416 4303 3.188048 CGGTAGTAAGGTACGCATAGGAG 59.812 52.174 0.00 0.00 0.00 3.69
2417 4304 3.057666 GGTAGTAAGGTACGCATAGGAGC 60.058 52.174 0.00 0.00 0.00 4.70
2418 4305 1.962100 AGTAAGGTACGCATAGGAGCC 59.038 52.381 0.00 0.00 0.00 4.70
2419 4306 1.000618 GTAAGGTACGCATAGGAGCCC 59.999 57.143 0.00 0.00 0.00 5.19
2420 4307 1.408453 AAGGTACGCATAGGAGCCCC 61.408 60.000 0.00 0.00 0.00 5.80
2421 4308 2.138179 GGTACGCATAGGAGCCCCA 61.138 63.158 0.00 0.00 33.88 4.96
2422 4309 1.069258 GTACGCATAGGAGCCCCAC 59.931 63.158 0.00 0.00 33.88 4.61
2423 4310 2.138179 TACGCATAGGAGCCCCACC 61.138 63.158 0.00 0.00 33.88 4.61
2424 4311 2.599139 TACGCATAGGAGCCCCACCT 62.599 60.000 0.00 0.00 41.05 4.00
2425 4312 2.832498 GCATAGGAGCCCCACCTC 59.168 66.667 0.00 0.00 38.76 3.85
2430 4317 3.493303 GGAGCCCCACCTCCCATC 61.493 72.222 0.00 0.00 44.60 3.51
2431 4318 3.493303 GAGCCCCACCTCCCATCC 61.493 72.222 0.00 0.00 0.00 3.51
2434 4321 2.370123 CCCCACCTCCCATCCCAT 60.370 66.667 0.00 0.00 0.00 4.00
2435 4322 1.073008 CCCCACCTCCCATCCCATA 60.073 63.158 0.00 0.00 0.00 2.74
2436 4323 1.136329 CCCCACCTCCCATCCCATAG 61.136 65.000 0.00 0.00 0.00 2.23
2437 4324 1.136329 CCCACCTCCCATCCCATAGG 61.136 65.000 0.00 0.00 35.14 2.57
2438 4325 1.763770 CACCTCCCATCCCATAGGC 59.236 63.158 0.00 0.00 31.98 3.93
2439 4326 1.464198 ACCTCCCATCCCATAGGCC 60.464 63.158 0.00 0.00 31.98 5.19
2440 4327 1.464001 CCTCCCATCCCATAGGCCA 60.464 63.158 5.01 0.00 0.00 5.36
2441 4328 1.067762 CCTCCCATCCCATAGGCCAA 61.068 60.000 5.01 0.00 0.00 4.52
2442 4329 0.403271 CTCCCATCCCATAGGCCAAG 59.597 60.000 5.01 0.00 0.00 3.61
2443 4330 0.029163 TCCCATCCCATAGGCCAAGA 60.029 55.000 5.01 0.00 0.00 3.02
2444 4331 1.078955 CCCATCCCATAGGCCAAGAT 58.921 55.000 5.01 0.00 0.00 2.40
2445 4332 2.157864 TCCCATCCCATAGGCCAAGATA 60.158 50.000 5.01 0.00 0.00 1.98
2446 4333 2.025887 CCCATCCCATAGGCCAAGATAC 60.026 54.545 5.01 0.00 0.00 2.24
2447 4334 2.355108 CCATCCCATAGGCCAAGATACG 60.355 54.545 5.01 0.00 0.00 3.06
2448 4335 2.097110 TCCCATAGGCCAAGATACGT 57.903 50.000 5.01 0.00 0.00 3.57
2449 4336 3.247948 TCCCATAGGCCAAGATACGTA 57.752 47.619 5.01 0.00 0.00 3.57
2450 4337 3.162666 TCCCATAGGCCAAGATACGTAG 58.837 50.000 5.01 0.00 0.00 3.51
2451 4338 3.162666 CCCATAGGCCAAGATACGTAGA 58.837 50.000 5.01 0.00 0.00 2.59
2452 4339 3.056749 CCCATAGGCCAAGATACGTAGAC 60.057 52.174 5.01 0.00 0.00 2.59
2453 4340 3.572682 CCATAGGCCAAGATACGTAGACA 59.427 47.826 5.01 0.00 0.00 3.41
2454 4341 4.547532 CATAGGCCAAGATACGTAGACAC 58.452 47.826 5.01 0.00 0.00 3.67
2455 4342 2.453521 AGGCCAAGATACGTAGACACA 58.546 47.619 5.01 0.00 0.00 3.72
2456 4343 2.829720 AGGCCAAGATACGTAGACACAA 59.170 45.455 5.01 0.00 0.00 3.33
2457 4344 3.259876 AGGCCAAGATACGTAGACACAAA 59.740 43.478 5.01 0.00 0.00 2.83
2458 4345 3.617263 GGCCAAGATACGTAGACACAAAG 59.383 47.826 0.00 0.00 0.00 2.77
2459 4346 4.243270 GCCAAGATACGTAGACACAAAGT 58.757 43.478 0.08 0.00 0.00 2.66
2460 4347 4.091509 GCCAAGATACGTAGACACAAAGTG 59.908 45.833 0.08 0.00 39.75 3.16
2461 4348 5.466819 CCAAGATACGTAGACACAAAGTGA 58.533 41.667 0.08 0.00 36.96 3.41
2462 4349 5.924254 CCAAGATACGTAGACACAAAGTGAA 59.076 40.000 0.08 0.00 36.96 3.18
2463 4350 6.089551 CCAAGATACGTAGACACAAAGTGAAG 59.910 42.308 0.08 0.00 36.96 3.02
2464 4351 5.710984 AGATACGTAGACACAAAGTGAAGG 58.289 41.667 0.08 0.00 36.96 3.46
2465 4352 5.475909 AGATACGTAGACACAAAGTGAAGGA 59.524 40.000 0.08 0.00 36.96 3.36
2466 4353 3.978687 ACGTAGACACAAAGTGAAGGAG 58.021 45.455 3.88 0.00 36.96 3.69
2467 4354 2.731976 CGTAGACACAAAGTGAAGGAGC 59.268 50.000 3.88 0.00 36.96 4.70
2468 4355 1.871080 AGACACAAAGTGAAGGAGCG 58.129 50.000 3.88 0.00 36.96 5.03
2469 4356 1.412710 AGACACAAAGTGAAGGAGCGA 59.587 47.619 3.88 0.00 36.96 4.93
2470 4357 1.527311 GACACAAAGTGAAGGAGCGAC 59.473 52.381 3.88 0.00 36.96 5.19
2471 4358 1.139058 ACACAAAGTGAAGGAGCGACT 59.861 47.619 3.88 0.00 36.96 4.18
2472 4359 2.213499 CACAAAGTGAAGGAGCGACTT 58.787 47.619 0.00 0.00 35.23 3.01
2473 4360 2.614057 CACAAAGTGAAGGAGCGACTTT 59.386 45.455 0.00 0.00 39.88 2.66
2474 4361 3.259207 CAAAGTGAAGGAGCGACTTTG 57.741 47.619 0.00 0.00 45.96 2.77
2475 4362 1.230324 AAGTGAAGGAGCGACTTTGC 58.770 50.000 0.00 0.00 0.00 3.68
2476 4363 0.106708 AGTGAAGGAGCGACTTTGCA 59.893 50.000 0.00 0.00 37.31 4.08
2477 4364 0.235926 GTGAAGGAGCGACTTTGCAC 59.764 55.000 0.00 0.00 37.31 4.57
2478 4365 1.221466 TGAAGGAGCGACTTTGCACG 61.221 55.000 0.00 0.00 37.31 5.34
2479 4366 0.944311 GAAGGAGCGACTTTGCACGA 60.944 55.000 0.00 0.00 37.31 4.35
2480 4367 1.222115 AAGGAGCGACTTTGCACGAC 61.222 55.000 0.00 0.00 37.31 4.34
2481 4368 2.668280 GGAGCGACTTTGCACGACC 61.668 63.158 0.00 0.00 37.31 4.79
2482 4369 1.954146 GAGCGACTTTGCACGACCA 60.954 57.895 0.00 0.00 37.31 4.02
2483 4370 1.495584 GAGCGACTTTGCACGACCAA 61.496 55.000 0.00 0.00 37.31 3.67
2484 4371 1.368850 GCGACTTTGCACGACCAAC 60.369 57.895 0.00 0.00 34.15 3.77
2485 4372 2.010670 CGACTTTGCACGACCAACA 58.989 52.632 0.00 0.00 0.00 3.33
2486 4373 0.042188 CGACTTTGCACGACCAACAG 60.042 55.000 0.00 0.00 0.00 3.16
2487 4374 0.307760 GACTTTGCACGACCAACAGG 59.692 55.000 0.00 0.00 0.00 4.00
2488 4375 0.107410 ACTTTGCACGACCAACAGGA 60.107 50.000 0.00 0.00 0.00 3.86
2489 4376 1.021202 CTTTGCACGACCAACAGGAA 58.979 50.000 0.00 0.00 0.00 3.36
2490 4377 1.002468 CTTTGCACGACCAACAGGAAG 60.002 52.381 0.00 0.00 0.00 3.46
2491 4378 0.817634 TTGCACGACCAACAGGAAGG 60.818 55.000 0.00 0.00 0.00 3.46
2492 4379 2.617274 GCACGACCAACAGGAAGGC 61.617 63.158 0.00 0.00 0.00 4.35
2493 4380 1.966451 CACGACCAACAGGAAGGCC 60.966 63.158 0.00 0.00 0.00 5.19
2494 4381 2.359975 CGACCAACAGGAAGGCCC 60.360 66.667 0.00 0.00 33.31 5.80
2495 4382 2.843545 GACCAACAGGAAGGCCCA 59.156 61.111 0.00 0.00 37.41 5.36
2496 4383 1.603739 GACCAACAGGAAGGCCCAC 60.604 63.158 0.00 0.00 37.41 4.61
2497 4384 2.069165 GACCAACAGGAAGGCCCACT 62.069 60.000 0.00 0.00 37.41 4.00
2498 4385 0.770557 ACCAACAGGAAGGCCCACTA 60.771 55.000 0.00 0.00 37.41 2.74
2499 4386 0.625849 CCAACAGGAAGGCCCACTAT 59.374 55.000 0.00 0.00 37.41 2.12
2500 4387 1.408822 CCAACAGGAAGGCCCACTATC 60.409 57.143 0.00 0.00 37.41 2.08
2501 4388 0.919710 AACAGGAAGGCCCACTATCC 59.080 55.000 0.00 0.00 37.41 2.59
2502 4389 0.253160 ACAGGAAGGCCCACTATCCA 60.253 55.000 0.00 0.00 37.41 3.41
2503 4390 0.471617 CAGGAAGGCCCACTATCCAG 59.528 60.000 0.00 0.00 37.41 3.86
2504 4391 1.149401 GGAAGGCCCACTATCCAGC 59.851 63.158 0.00 0.00 34.14 4.85
2505 4392 1.149401 GAAGGCCCACTATCCAGCC 59.851 63.158 0.00 0.00 46.13 4.85
2507 4394 2.832498 GGCCCACTATCCAGCCTC 59.168 66.667 0.00 0.00 42.34 4.70
2508 4395 2.072487 GGCCCACTATCCAGCCTCA 61.072 63.158 0.00 0.00 42.34 3.86
2509 4396 1.449353 GCCCACTATCCAGCCTCAG 59.551 63.158 0.00 0.00 0.00 3.35
2510 4397 1.449353 CCCACTATCCAGCCTCAGC 59.551 63.158 0.00 0.00 40.32 4.26
2511 4398 1.068753 CCACTATCCAGCCTCAGCG 59.931 63.158 0.00 0.00 46.67 5.18
2512 4399 1.395045 CCACTATCCAGCCTCAGCGA 61.395 60.000 0.00 0.00 46.67 4.93
2513 4400 0.461548 CACTATCCAGCCTCAGCGAA 59.538 55.000 0.00 0.00 46.67 4.70
2514 4401 0.749649 ACTATCCAGCCTCAGCGAAG 59.250 55.000 0.00 0.00 46.67 3.79
2541 4428 4.431131 CCCCCTGAGCGTTGGCAT 62.431 66.667 0.00 0.00 43.41 4.40
2542 4429 2.589540 CCCCTGAGCGTTGGCATA 59.410 61.111 0.00 0.00 43.41 3.14
2543 4430 1.149174 CCCCTGAGCGTTGGCATAT 59.851 57.895 0.00 0.00 43.41 1.78
2544 4431 0.886490 CCCCTGAGCGTTGGCATATC 60.886 60.000 0.00 0.00 43.41 1.63
2545 4432 0.107456 CCCTGAGCGTTGGCATATCT 59.893 55.000 0.00 0.00 43.41 1.98
2546 4433 1.344438 CCCTGAGCGTTGGCATATCTA 59.656 52.381 0.00 0.00 43.41 1.98
2547 4434 2.611473 CCCTGAGCGTTGGCATATCTAG 60.611 54.545 0.00 0.00 43.41 2.43
2548 4435 2.064762 CTGAGCGTTGGCATATCTAGC 58.935 52.381 0.00 0.00 43.41 3.42
2559 4446 4.327854 GCATATCTAGCCACGCATAAAC 57.672 45.455 0.00 0.00 0.00 2.01
2560 4447 3.997021 GCATATCTAGCCACGCATAAACT 59.003 43.478 0.00 0.00 0.00 2.66
2561 4448 4.452455 GCATATCTAGCCACGCATAAACTT 59.548 41.667 0.00 0.00 0.00 2.66
2562 4449 5.615544 GCATATCTAGCCACGCATAAACTTG 60.616 44.000 0.00 0.00 0.00 3.16
2563 4450 2.006888 TCTAGCCACGCATAAACTTGC 58.993 47.619 0.00 0.00 39.29 4.01
2564 4451 1.737236 CTAGCCACGCATAAACTTGCA 59.263 47.619 0.00 0.00 42.91 4.08
2565 4452 0.523072 AGCCACGCATAAACTTGCAG 59.477 50.000 0.00 0.00 42.91 4.41
2566 4453 0.456653 GCCACGCATAAACTTGCAGG 60.457 55.000 0.00 0.00 42.91 4.85
2567 4454 0.171007 CCACGCATAAACTTGCAGGG 59.829 55.000 0.00 0.00 42.91 4.45
2568 4455 0.171007 CACGCATAAACTTGCAGGGG 59.829 55.000 0.00 0.00 42.91 4.79
2569 4456 0.037590 ACGCATAAACTTGCAGGGGA 59.962 50.000 0.00 0.00 42.91 4.81
2570 4457 1.340991 ACGCATAAACTTGCAGGGGAT 60.341 47.619 0.00 0.00 42.91 3.85
2571 4458 1.066002 CGCATAAACTTGCAGGGGATG 59.934 52.381 0.00 1.85 42.91 3.51
2572 4459 2.102578 GCATAAACTTGCAGGGGATGT 58.897 47.619 0.00 0.00 42.31 3.06
2573 4460 2.497273 GCATAAACTTGCAGGGGATGTT 59.503 45.455 0.00 0.00 42.31 2.71
2574 4461 3.055891 GCATAAACTTGCAGGGGATGTTT 60.056 43.478 0.00 6.88 42.31 2.83
2575 4462 4.497300 CATAAACTTGCAGGGGATGTTTG 58.503 43.478 0.00 0.00 33.63 2.93
2576 4463 1.341080 AACTTGCAGGGGATGTTTGG 58.659 50.000 0.00 0.00 0.00 3.28
2577 4464 0.482446 ACTTGCAGGGGATGTTTGGA 59.518 50.000 0.00 0.00 0.00 3.53
2578 4465 1.180029 CTTGCAGGGGATGTTTGGAG 58.820 55.000 0.00 0.00 0.00 3.86
2579 4466 0.482446 TTGCAGGGGATGTTTGGAGT 59.518 50.000 0.00 0.00 0.00 3.85
2580 4467 0.038166 TGCAGGGGATGTTTGGAGTC 59.962 55.000 0.00 0.00 0.00 3.36
2581 4468 0.038166 GCAGGGGATGTTTGGAGTCA 59.962 55.000 0.00 0.00 0.00 3.41
2582 4469 1.341383 GCAGGGGATGTTTGGAGTCAT 60.341 52.381 0.00 0.00 0.00 3.06
2583 4470 2.092429 GCAGGGGATGTTTGGAGTCATA 60.092 50.000 0.00 0.00 0.00 2.15
2584 4471 3.435601 GCAGGGGATGTTTGGAGTCATAT 60.436 47.826 0.00 0.00 0.00 1.78
2585 4472 4.202461 GCAGGGGATGTTTGGAGTCATATA 60.202 45.833 0.00 0.00 0.00 0.86
2586 4473 5.515534 GCAGGGGATGTTTGGAGTCATATAT 60.516 44.000 0.00 0.00 0.00 0.86
2587 4474 5.942236 CAGGGGATGTTTGGAGTCATATATG 59.058 44.000 6.36 6.36 0.00 1.78
2588 4475 4.702131 GGGGATGTTTGGAGTCATATATGC 59.298 45.833 7.92 3.70 0.00 3.14
2589 4476 5.316167 GGGATGTTTGGAGTCATATATGCA 58.684 41.667 7.92 0.00 0.00 3.96
2590 4477 5.948162 GGGATGTTTGGAGTCATATATGCAT 59.052 40.000 3.79 3.79 0.00 3.96
2591 4478 6.127814 GGGATGTTTGGAGTCATATATGCATG 60.128 42.308 10.16 0.00 0.00 4.06
2592 4479 6.656270 GGATGTTTGGAGTCATATATGCATGA 59.344 38.462 10.16 0.00 32.50 3.07
2593 4480 7.148289 GGATGTTTGGAGTCATATATGCATGAG 60.148 40.741 10.16 0.00 35.63 2.90
2594 4481 6.829849 TGTTTGGAGTCATATATGCATGAGA 58.170 36.000 10.16 0.00 35.63 3.27
2595 4482 7.455891 TGTTTGGAGTCATATATGCATGAGAT 58.544 34.615 10.16 0.00 35.63 2.75
2596 4483 8.596293 TGTTTGGAGTCATATATGCATGAGATA 58.404 33.333 10.16 0.00 35.63 1.98
2597 4484 9.096160 GTTTGGAGTCATATATGCATGAGATAG 57.904 37.037 10.16 0.00 35.63 2.08
2598 4485 8.599624 TTGGAGTCATATATGCATGAGATAGA 57.400 34.615 10.16 0.00 35.63 1.98
2599 4486 8.779096 TGGAGTCATATATGCATGAGATAGAT 57.221 34.615 10.16 0.00 35.63 1.98
2600 4487 8.639761 TGGAGTCATATATGCATGAGATAGATG 58.360 37.037 10.16 1.90 35.63 2.90
2601 4488 8.640651 GGAGTCATATATGCATGAGATAGATGT 58.359 37.037 10.16 0.00 35.63 3.06
2603 4490 9.819267 AGTCATATATGCATGAGATAGATGTTG 57.181 33.333 10.16 0.00 35.63 3.33
2604 4491 8.549548 GTCATATATGCATGAGATAGATGTTGC 58.450 37.037 10.16 0.00 35.63 4.17
2605 4492 7.713942 TCATATATGCATGAGATAGATGTTGCC 59.286 37.037 10.16 0.00 30.38 4.52
2606 4493 2.854963 TGCATGAGATAGATGTTGCCC 58.145 47.619 0.00 0.00 0.00 5.36
2607 4494 2.173143 TGCATGAGATAGATGTTGCCCA 59.827 45.455 0.00 0.00 0.00 5.36
2608 4495 3.181437 TGCATGAGATAGATGTTGCCCAT 60.181 43.478 0.00 0.00 36.13 4.00
2609 4496 3.190744 GCATGAGATAGATGTTGCCCATG 59.809 47.826 0.00 0.00 32.56 3.66
2610 4497 3.497103 TGAGATAGATGTTGCCCATGG 57.503 47.619 4.14 4.14 32.56 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.706433 AAGGGATCTGGCCACACATT 59.294 50.000 0.00 0.00 0.00 2.71
1 2 1.595311 TAAGGGATCTGGCCACACAT 58.405 50.000 0.00 0.00 0.00 3.21
2 3 1.367346 TTAAGGGATCTGGCCACACA 58.633 50.000 0.00 0.00 0.00 3.72
3 4 2.369394 CTTTAAGGGATCTGGCCACAC 58.631 52.381 0.00 0.00 0.00 3.82
4 5 1.340991 GCTTTAAGGGATCTGGCCACA 60.341 52.381 0.00 0.00 0.00 4.17
5 6 1.393603 GCTTTAAGGGATCTGGCCAC 58.606 55.000 0.00 0.00 0.00 5.01
6 7 0.258774 GGCTTTAAGGGATCTGGCCA 59.741 55.000 4.71 4.71 38.16 5.36
7 8 0.468214 GGGCTTTAAGGGATCTGGCC 60.468 60.000 0.00 0.00 37.61 5.36
8 9 0.258774 TGGGCTTTAAGGGATCTGGC 59.741 55.000 0.00 0.00 0.00 4.85
9 10 1.284785 TGTGGGCTTTAAGGGATCTGG 59.715 52.381 0.00 0.00 0.00 3.86
10 11 2.369394 GTGTGGGCTTTAAGGGATCTG 58.631 52.381 0.00 0.00 0.00 2.90
11 12 1.065418 CGTGTGGGCTTTAAGGGATCT 60.065 52.381 0.00 0.00 0.00 2.75
12 13 1.339727 ACGTGTGGGCTTTAAGGGATC 60.340 52.381 0.00 0.00 0.00 3.36
13 14 0.696501 ACGTGTGGGCTTTAAGGGAT 59.303 50.000 0.00 0.00 0.00 3.85
14 15 0.250553 CACGTGTGGGCTTTAAGGGA 60.251 55.000 7.58 0.00 0.00 4.20
15 16 0.536460 ACACGTGTGGGCTTTAAGGG 60.536 55.000 22.71 0.00 34.19 3.95
16 17 0.872388 GACACGTGTGGGCTTTAAGG 59.128 55.000 28.82 0.00 34.19 2.69
17 18 0.511221 CGACACGTGTGGGCTTTAAG 59.489 55.000 28.82 1.89 34.19 1.85
18 19 1.500512 GCGACACGTGTGGGCTTTAA 61.501 55.000 28.82 0.00 33.35 1.52
19 20 1.957186 GCGACACGTGTGGGCTTTA 60.957 57.895 28.82 0.00 33.35 1.85
20 21 3.276846 GCGACACGTGTGGGCTTT 61.277 61.111 28.82 0.00 33.35 3.51
31 32 4.327898 TGTAATAAAAGATGGACGCGACAC 59.672 41.667 15.93 2.25 0.00 3.67
32 33 4.496360 TGTAATAAAAGATGGACGCGACA 58.504 39.130 15.93 12.47 0.00 4.35
33 34 5.462398 AGATGTAATAAAAGATGGACGCGAC 59.538 40.000 15.93 6.56 0.00 5.19
34 35 5.462068 CAGATGTAATAAAAGATGGACGCGA 59.538 40.000 15.93 0.00 0.00 5.87
35 36 5.462068 TCAGATGTAATAAAAGATGGACGCG 59.538 40.000 3.53 3.53 0.00 6.01
36 37 6.564873 GCTCAGATGTAATAAAAGATGGACGC 60.565 42.308 0.00 0.00 0.00 5.19
37 38 6.346120 CGCTCAGATGTAATAAAAGATGGACG 60.346 42.308 0.00 0.00 0.00 4.79
38 39 6.073548 CCGCTCAGATGTAATAAAAGATGGAC 60.074 42.308 0.00 0.00 0.00 4.02
39 40 5.991606 CCGCTCAGATGTAATAAAAGATGGA 59.008 40.000 0.00 0.00 0.00 3.41
40 41 5.760253 ACCGCTCAGATGTAATAAAAGATGG 59.240 40.000 0.00 0.00 0.00 3.51
41 42 6.851222 ACCGCTCAGATGTAATAAAAGATG 57.149 37.500 0.00 0.00 0.00 2.90
42 43 6.201044 CGAACCGCTCAGATGTAATAAAAGAT 59.799 38.462 0.00 0.00 0.00 2.40
43 44 5.518847 CGAACCGCTCAGATGTAATAAAAGA 59.481 40.000 0.00 0.00 0.00 2.52
44 45 5.291128 ACGAACCGCTCAGATGTAATAAAAG 59.709 40.000 0.00 0.00 0.00 2.27
45 46 5.172934 ACGAACCGCTCAGATGTAATAAAA 58.827 37.500 0.00 0.00 0.00 1.52
46 47 4.751060 ACGAACCGCTCAGATGTAATAAA 58.249 39.130 0.00 0.00 0.00 1.40
47 48 4.097437 AGACGAACCGCTCAGATGTAATAA 59.903 41.667 0.00 0.00 0.00 1.40
48 49 3.630769 AGACGAACCGCTCAGATGTAATA 59.369 43.478 0.00 0.00 0.00 0.98
49 50 2.427453 AGACGAACCGCTCAGATGTAAT 59.573 45.455 0.00 0.00 0.00 1.89
50 51 1.816835 AGACGAACCGCTCAGATGTAA 59.183 47.619 0.00 0.00 0.00 2.41
51 52 1.460504 AGACGAACCGCTCAGATGTA 58.539 50.000 0.00 0.00 0.00 2.29
52 53 0.603569 AAGACGAACCGCTCAGATGT 59.396 50.000 0.00 0.00 0.00 3.06
53 54 1.135257 AGAAGACGAACCGCTCAGATG 60.135 52.381 0.00 0.00 0.00 2.90
54 55 1.178276 AGAAGACGAACCGCTCAGAT 58.822 50.000 0.00 0.00 0.00 2.90
55 56 1.817357 TAGAAGACGAACCGCTCAGA 58.183 50.000 0.00 0.00 0.00 3.27
56 57 2.722071 GATAGAAGACGAACCGCTCAG 58.278 52.381 0.00 0.00 0.00 3.35
57 58 1.063616 CGATAGAAGACGAACCGCTCA 59.936 52.381 0.00 0.00 39.76 4.26
58 59 1.063764 ACGATAGAAGACGAACCGCTC 59.936 52.381 0.00 0.00 41.38 5.03
59 60 1.093159 ACGATAGAAGACGAACCGCT 58.907 50.000 0.00 0.00 41.38 5.52
60 61 1.905449 AACGATAGAAGACGAACCGC 58.095 50.000 0.00 0.00 41.38 5.68
61 62 5.997732 TTAAAACGATAGAAGACGAACCG 57.002 39.130 0.00 0.00 41.38 4.44
91 92 9.552695 TGTCATGTCCAAGGATCTATCTATTAT 57.447 33.333 0.00 0.00 0.00 1.28
92 93 8.807118 GTGTCATGTCCAAGGATCTATCTATTA 58.193 37.037 0.00 0.00 0.00 0.98
93 94 7.256475 GGTGTCATGTCCAAGGATCTATCTATT 60.256 40.741 0.00 0.00 0.00 1.73
94 95 6.212388 GGTGTCATGTCCAAGGATCTATCTAT 59.788 42.308 0.00 0.00 0.00 1.98
95 96 5.540337 GGTGTCATGTCCAAGGATCTATCTA 59.460 44.000 0.00 0.00 0.00 1.98
96 97 4.346418 GGTGTCATGTCCAAGGATCTATCT 59.654 45.833 0.00 0.00 0.00 1.98
97 98 4.101585 TGGTGTCATGTCCAAGGATCTATC 59.898 45.833 0.00 0.00 0.00 2.08
98 99 4.040047 TGGTGTCATGTCCAAGGATCTAT 58.960 43.478 0.00 0.00 0.00 1.98
99 100 3.449918 TGGTGTCATGTCCAAGGATCTA 58.550 45.455 0.00 0.00 0.00 1.98
100 101 2.269023 TGGTGTCATGTCCAAGGATCT 58.731 47.619 0.00 0.00 0.00 2.75
101 102 2.787473 TGGTGTCATGTCCAAGGATC 57.213 50.000 0.00 0.00 0.00 3.36
397 426 1.005215 CCAGAGCAGAAGGATTTGGGT 59.995 52.381 0.00 0.00 0.00 4.51
859 2358 2.661866 GTGGTGCTCGACGTGCTT 60.662 61.111 21.05 0.00 0.00 3.91
951 2487 2.558378 CTGTACTCGATGAGGTACCGA 58.442 52.381 6.18 0.00 37.92 4.69
1171 2707 2.044555 CGCAGTAGGACCGTCTGGA 61.045 63.158 16.62 0.00 39.21 3.86
1172 2708 1.028330 TACGCAGTAGGACCGTCTGG 61.028 60.000 16.62 11.04 45.11 3.86
1173 2709 2.474561 TACGCAGTAGGACCGTCTG 58.525 57.895 12.52 12.52 45.11 3.51
1344 2905 4.779733 ACCGGCGGGATCCTGAGT 62.780 66.667 31.78 14.48 36.97 3.41
1518 3079 4.003788 CTCACGTTGGCGACCCCT 62.004 66.667 0.00 0.00 42.00 4.79
1600 3161 4.554036 GAGGCATCCCCCGAGCAC 62.554 72.222 0.00 0.00 0.00 4.40
1903 3768 2.571653 CTCCAGATCAACCCCTACAACA 59.428 50.000 0.00 0.00 0.00 3.33
1934 3799 2.363306 AAAGCCACACTGACATCCAA 57.637 45.000 0.00 0.00 0.00 3.53
1974 3848 4.038522 TGATTTTCTCCATCTCCTAGCGAG 59.961 45.833 0.00 2.70 40.30 5.03
1987 3861 5.100943 GCAGCATTTTCTCTGATTTTCTCC 58.899 41.667 0.00 0.00 32.26 3.71
2106 3985 9.262472 GTAATCGAGACAAATGTTCACAAATAC 57.738 33.333 0.00 0.00 0.00 1.89
2150 4029 4.956075 TGCCATCTAAGGAAAAGAAATCCC 59.044 41.667 0.00 0.00 37.71 3.85
2157 4036 7.649306 CGGAAATATTTGCCATCTAAGGAAAAG 59.351 37.037 13.38 0.00 39.53 2.27
2172 4051 7.388776 TGATCTAGAATCCAGCGGAAATATTTG 59.611 37.037 5.17 0.00 34.34 2.32
2210 4090 8.512138 GCACAACAACTAAATTCACTAGGTATT 58.488 33.333 0.00 0.00 0.00 1.89
2212 4092 7.221450 AGCACAACAACTAAATTCACTAGGTA 58.779 34.615 0.00 0.00 0.00 3.08
2266 4148 8.408043 TCCCATCTATAAAATTGTTGCCATAG 57.592 34.615 0.00 0.00 0.00 2.23
2279 4161 9.520515 GCTCAATCCTTAATTCCCATCTATAAA 57.479 33.333 0.00 0.00 0.00 1.40
2283 4165 6.770286 AGCTCAATCCTTAATTCCCATCTA 57.230 37.500 0.00 0.00 0.00 1.98
2289 4171 6.691508 ACACAAAAGCTCAATCCTTAATTCC 58.308 36.000 0.00 0.00 0.00 3.01
2290 4172 9.129209 GTTACACAAAAGCTCAATCCTTAATTC 57.871 33.333 0.00 0.00 0.00 2.17
2296 4178 5.133221 AGTGTTACACAAAAGCTCAATCCT 58.867 37.500 18.19 0.00 36.74 3.24
2311 4193 5.594725 TGATTGTTGCCCTAAAAGTGTTACA 59.405 36.000 0.00 0.00 0.00 2.41
2318 4205 2.817258 TCCGTGATTGTTGCCCTAAAAG 59.183 45.455 0.00 0.00 0.00 2.27
2327 4214 7.456684 TGTAAATGTTTTTCCGTGATTGTTG 57.543 32.000 0.00 0.00 0.00 3.33
2355 4242 4.258543 CAACGGAGGGAGTAGCATAAAAA 58.741 43.478 0.00 0.00 0.00 1.94
2359 4246 0.750850 GCAACGGAGGGAGTAGCATA 59.249 55.000 0.00 0.00 0.00 3.14
2360 4247 0.978146 AGCAACGGAGGGAGTAGCAT 60.978 55.000 0.00 0.00 0.00 3.79
2361 4248 1.605058 GAGCAACGGAGGGAGTAGCA 61.605 60.000 0.00 0.00 0.00 3.49
2362 4249 1.142097 GAGCAACGGAGGGAGTAGC 59.858 63.158 0.00 0.00 0.00 3.58
2363 4250 1.134965 CAAGAGCAACGGAGGGAGTAG 60.135 57.143 0.00 0.00 0.00 2.57
2364 4251 0.895530 CAAGAGCAACGGAGGGAGTA 59.104 55.000 0.00 0.00 0.00 2.59
2365 4252 1.122019 ACAAGAGCAACGGAGGGAGT 61.122 55.000 0.00 0.00 0.00 3.85
2366 4253 0.895530 TACAAGAGCAACGGAGGGAG 59.104 55.000 0.00 0.00 0.00 4.30
2367 4254 1.568504 ATACAAGAGCAACGGAGGGA 58.431 50.000 0.00 0.00 0.00 4.20
2368 4255 2.403252 AATACAAGAGCAACGGAGGG 57.597 50.000 0.00 0.00 0.00 4.30
2369 4256 3.119849 CCAAAATACAAGAGCAACGGAGG 60.120 47.826 0.00 0.00 0.00 4.30
2370 4257 3.119849 CCCAAAATACAAGAGCAACGGAG 60.120 47.826 0.00 0.00 0.00 4.63
2371 4258 2.817258 CCCAAAATACAAGAGCAACGGA 59.183 45.455 0.00 0.00 0.00 4.69
2372 4259 2.817258 TCCCAAAATACAAGAGCAACGG 59.183 45.455 0.00 0.00 0.00 4.44
2373 4260 3.666902 CGTCCCAAAATACAAGAGCAACG 60.667 47.826 0.00 0.00 0.00 4.10
2374 4261 3.365969 CCGTCCCAAAATACAAGAGCAAC 60.366 47.826 0.00 0.00 0.00 4.17
2375 4262 2.817258 CCGTCCCAAAATACAAGAGCAA 59.183 45.455 0.00 0.00 0.00 3.91
2376 4263 2.224670 ACCGTCCCAAAATACAAGAGCA 60.225 45.455 0.00 0.00 0.00 4.26
2377 4264 2.433436 ACCGTCCCAAAATACAAGAGC 58.567 47.619 0.00 0.00 0.00 4.09
2378 4265 4.828829 ACTACCGTCCCAAAATACAAGAG 58.171 43.478 0.00 0.00 0.00 2.85
2379 4266 4.895668 ACTACCGTCCCAAAATACAAGA 57.104 40.909 0.00 0.00 0.00 3.02
2380 4267 5.583457 CCTTACTACCGTCCCAAAATACAAG 59.417 44.000 0.00 0.00 0.00 3.16
2381 4268 5.012975 ACCTTACTACCGTCCCAAAATACAA 59.987 40.000 0.00 0.00 0.00 2.41
2382 4269 4.531732 ACCTTACTACCGTCCCAAAATACA 59.468 41.667 0.00 0.00 0.00 2.29
2383 4270 5.089970 ACCTTACTACCGTCCCAAAATAC 57.910 43.478 0.00 0.00 0.00 1.89
2384 4271 5.163561 CGTACCTTACTACCGTCCCAAAATA 60.164 44.000 0.00 0.00 0.00 1.40
2385 4272 4.381932 CGTACCTTACTACCGTCCCAAAAT 60.382 45.833 0.00 0.00 0.00 1.82
2386 4273 3.056891 CGTACCTTACTACCGTCCCAAAA 60.057 47.826 0.00 0.00 0.00 2.44
2387 4274 2.491693 CGTACCTTACTACCGTCCCAAA 59.508 50.000 0.00 0.00 0.00 3.28
2388 4275 2.091541 CGTACCTTACTACCGTCCCAA 58.908 52.381 0.00 0.00 0.00 4.12
2389 4276 1.750193 CGTACCTTACTACCGTCCCA 58.250 55.000 0.00 0.00 0.00 4.37
2390 4277 0.382158 GCGTACCTTACTACCGTCCC 59.618 60.000 0.00 0.00 0.00 4.46
2391 4278 1.094785 TGCGTACCTTACTACCGTCC 58.905 55.000 0.00 0.00 0.00 4.79
2392 4279 3.058639 CCTATGCGTACCTTACTACCGTC 60.059 52.174 0.00 0.00 0.00 4.79
2393 4280 2.880890 CCTATGCGTACCTTACTACCGT 59.119 50.000 0.00 0.00 0.00 4.83
2394 4281 3.141398 TCCTATGCGTACCTTACTACCG 58.859 50.000 0.00 0.00 0.00 4.02
2395 4282 3.057666 GCTCCTATGCGTACCTTACTACC 60.058 52.174 0.00 0.00 0.00 3.18
2396 4283 3.057666 GGCTCCTATGCGTACCTTACTAC 60.058 52.174 0.00 0.00 0.00 2.73
2397 4284 3.152341 GGCTCCTATGCGTACCTTACTA 58.848 50.000 0.00 0.00 0.00 1.82
2398 4285 1.962100 GGCTCCTATGCGTACCTTACT 59.038 52.381 0.00 0.00 0.00 2.24
2399 4286 1.000618 GGGCTCCTATGCGTACCTTAC 59.999 57.143 0.00 0.00 0.00 2.34
2400 4287 1.335145 GGGCTCCTATGCGTACCTTA 58.665 55.000 0.00 0.00 0.00 2.69
2401 4288 1.408453 GGGGCTCCTATGCGTACCTT 61.408 60.000 0.00 0.00 0.00 3.50
2402 4289 1.837499 GGGGCTCCTATGCGTACCT 60.837 63.158 0.00 0.00 0.00 3.08
2403 4290 2.138179 TGGGGCTCCTATGCGTACC 61.138 63.158 3.07 0.00 0.00 3.34
2404 4291 1.069258 GTGGGGCTCCTATGCGTAC 59.931 63.158 3.07 0.00 0.00 3.67
2405 4292 2.138179 GGTGGGGCTCCTATGCGTA 61.138 63.158 3.07 0.00 0.00 4.42
2406 4293 3.480133 GGTGGGGCTCCTATGCGT 61.480 66.667 3.07 0.00 0.00 5.24
2407 4294 3.164269 AGGTGGGGCTCCTATGCG 61.164 66.667 3.07 0.00 33.04 4.73
2408 4295 2.823758 GGAGGTGGGGCTCCTATGC 61.824 68.421 3.07 0.00 36.84 3.14
2409 4296 2.150051 GGGAGGTGGGGCTCCTATG 61.150 68.421 3.07 0.00 39.58 2.23
2410 4297 1.990370 ATGGGAGGTGGGGCTCCTAT 61.990 60.000 3.07 0.00 39.58 2.57
2411 4298 2.621672 GATGGGAGGTGGGGCTCCTA 62.622 65.000 3.07 0.00 39.58 2.94
2412 4299 4.044390 ATGGGAGGTGGGGCTCCT 62.044 66.667 3.07 0.00 39.58 3.69
2413 4300 3.493303 GATGGGAGGTGGGGCTCC 61.493 72.222 0.00 0.00 38.96 4.70
2414 4301 3.493303 GGATGGGAGGTGGGGCTC 61.493 72.222 0.00 0.00 0.00 4.70
2417 4304 1.073008 TATGGGATGGGAGGTGGGG 60.073 63.158 0.00 0.00 0.00 4.96
2418 4305 1.136329 CCTATGGGATGGGAGGTGGG 61.136 65.000 0.00 0.00 31.57 4.61
2419 4306 1.783250 GCCTATGGGATGGGAGGTGG 61.783 65.000 0.00 0.00 31.57 4.61
2420 4307 1.763770 GCCTATGGGATGGGAGGTG 59.236 63.158 0.00 0.00 31.57 4.00
2421 4308 1.464198 GGCCTATGGGATGGGAGGT 60.464 63.158 0.00 0.00 31.57 3.85
2422 4309 1.067762 TTGGCCTATGGGATGGGAGG 61.068 60.000 3.32 0.00 31.57 4.30
2423 4310 0.403271 CTTGGCCTATGGGATGGGAG 59.597 60.000 3.32 0.00 31.57 4.30
2424 4311 0.029163 TCTTGGCCTATGGGATGGGA 60.029 55.000 3.32 0.00 31.57 4.37
2425 4312 1.078955 ATCTTGGCCTATGGGATGGG 58.921 55.000 3.32 0.00 33.58 4.00
2426 4313 2.355108 CGTATCTTGGCCTATGGGATGG 60.355 54.545 3.32 0.00 33.58 3.51
2427 4314 2.303022 ACGTATCTTGGCCTATGGGATG 59.697 50.000 3.32 0.00 33.58 3.51
2428 4315 2.621070 ACGTATCTTGGCCTATGGGAT 58.379 47.619 3.32 0.00 33.58 3.85
2429 4316 2.097110 ACGTATCTTGGCCTATGGGA 57.903 50.000 3.32 0.00 33.58 4.37
2430 4317 3.056749 GTCTACGTATCTTGGCCTATGGG 60.057 52.174 3.32 0.00 0.00 4.00
2431 4318 3.572682 TGTCTACGTATCTTGGCCTATGG 59.427 47.826 3.32 0.00 0.00 2.74
2432 4319 4.037565 TGTGTCTACGTATCTTGGCCTATG 59.962 45.833 3.32 0.00 0.00 2.23
2433 4320 4.212716 TGTGTCTACGTATCTTGGCCTAT 58.787 43.478 3.32 0.00 0.00 2.57
2434 4321 3.623703 TGTGTCTACGTATCTTGGCCTA 58.376 45.455 3.32 0.00 0.00 3.93
2435 4322 2.453521 TGTGTCTACGTATCTTGGCCT 58.546 47.619 3.32 0.00 0.00 5.19
2436 4323 2.953466 TGTGTCTACGTATCTTGGCC 57.047 50.000 0.00 0.00 0.00 5.36
2437 4324 4.091509 CACTTTGTGTCTACGTATCTTGGC 59.908 45.833 0.00 0.00 0.00 4.52
2438 4325 5.466819 TCACTTTGTGTCTACGTATCTTGG 58.533 41.667 0.00 0.00 34.79 3.61
2439 4326 6.089551 CCTTCACTTTGTGTCTACGTATCTTG 59.910 42.308 0.00 0.00 34.79 3.02
2440 4327 6.015688 TCCTTCACTTTGTGTCTACGTATCTT 60.016 38.462 0.00 0.00 34.79 2.40
2441 4328 5.475909 TCCTTCACTTTGTGTCTACGTATCT 59.524 40.000 0.00 0.00 34.79 1.98
2442 4329 5.706916 TCCTTCACTTTGTGTCTACGTATC 58.293 41.667 0.00 0.00 34.79 2.24
2443 4330 5.710984 CTCCTTCACTTTGTGTCTACGTAT 58.289 41.667 0.00 0.00 34.79 3.06
2444 4331 4.558095 GCTCCTTCACTTTGTGTCTACGTA 60.558 45.833 0.00 0.00 34.79 3.57
2445 4332 3.799232 GCTCCTTCACTTTGTGTCTACGT 60.799 47.826 0.00 0.00 34.79 3.57
2446 4333 2.731976 GCTCCTTCACTTTGTGTCTACG 59.268 50.000 0.00 0.00 34.79 3.51
2447 4334 2.731976 CGCTCCTTCACTTTGTGTCTAC 59.268 50.000 0.00 0.00 34.79 2.59
2448 4335 2.626266 TCGCTCCTTCACTTTGTGTCTA 59.374 45.455 0.00 0.00 34.79 2.59
2449 4336 1.412710 TCGCTCCTTCACTTTGTGTCT 59.587 47.619 0.00 0.00 34.79 3.41
2450 4337 1.527311 GTCGCTCCTTCACTTTGTGTC 59.473 52.381 0.00 0.00 34.79 3.67
2451 4338 1.139058 AGTCGCTCCTTCACTTTGTGT 59.861 47.619 0.00 0.00 34.79 3.72
2452 4339 1.871080 AGTCGCTCCTTCACTTTGTG 58.129 50.000 0.00 0.00 34.45 3.33
2453 4340 2.614057 CAAAGTCGCTCCTTCACTTTGT 59.386 45.455 13.30 0.00 46.34 2.83
2454 4341 3.259207 CAAAGTCGCTCCTTCACTTTG 57.741 47.619 8.85 8.85 46.32 2.77
2455 4342 1.604278 GCAAAGTCGCTCCTTCACTTT 59.396 47.619 0.00 0.00 40.28 2.66
2456 4343 1.230324 GCAAAGTCGCTCCTTCACTT 58.770 50.000 0.00 0.00 31.48 3.16
2457 4344 0.106708 TGCAAAGTCGCTCCTTCACT 59.893 50.000 0.00 0.00 0.00 3.41
2458 4345 0.235926 GTGCAAAGTCGCTCCTTCAC 59.764 55.000 0.00 0.00 0.00 3.18
2459 4346 1.221466 CGTGCAAAGTCGCTCCTTCA 61.221 55.000 0.00 0.00 0.00 3.02
2460 4347 0.944311 TCGTGCAAAGTCGCTCCTTC 60.944 55.000 0.00 0.00 0.00 3.46
2461 4348 1.069090 TCGTGCAAAGTCGCTCCTT 59.931 52.632 0.00 0.00 0.00 3.36
2462 4349 1.664965 GTCGTGCAAAGTCGCTCCT 60.665 57.895 0.00 0.00 0.00 3.69
2463 4350 2.668280 GGTCGTGCAAAGTCGCTCC 61.668 63.158 0.00 0.00 0.00 4.70
2464 4351 1.495584 TTGGTCGTGCAAAGTCGCTC 61.496 55.000 0.00 0.00 0.00 5.03
2465 4352 1.522806 TTGGTCGTGCAAAGTCGCT 60.523 52.632 0.00 0.00 0.00 4.93
2466 4353 1.368850 GTTGGTCGTGCAAAGTCGC 60.369 57.895 0.00 0.00 0.00 5.19
2467 4354 0.042188 CTGTTGGTCGTGCAAAGTCG 60.042 55.000 0.00 0.00 0.00 4.18
2468 4355 0.307760 CCTGTTGGTCGTGCAAAGTC 59.692 55.000 0.00 0.00 0.00 3.01
2469 4356 0.107410 TCCTGTTGGTCGTGCAAAGT 60.107 50.000 0.00 0.00 34.23 2.66
2470 4357 1.002468 CTTCCTGTTGGTCGTGCAAAG 60.002 52.381 0.00 0.00 34.23 2.77
2471 4358 1.021202 CTTCCTGTTGGTCGTGCAAA 58.979 50.000 0.00 0.00 34.23 3.68
2472 4359 0.817634 CCTTCCTGTTGGTCGTGCAA 60.818 55.000 0.00 0.00 34.23 4.08
2473 4360 1.227823 CCTTCCTGTTGGTCGTGCA 60.228 57.895 0.00 0.00 34.23 4.57
2474 4361 2.617274 GCCTTCCTGTTGGTCGTGC 61.617 63.158 0.00 0.00 34.23 5.34
2475 4362 1.966451 GGCCTTCCTGTTGGTCGTG 60.966 63.158 0.00 0.00 34.23 4.35
2476 4363 2.430367 GGCCTTCCTGTTGGTCGT 59.570 61.111 0.00 0.00 34.23 4.34
2477 4364 2.359975 GGGCCTTCCTGTTGGTCG 60.360 66.667 0.84 0.00 34.23 4.79
2478 4365 1.603739 GTGGGCCTTCCTGTTGGTC 60.604 63.158 4.53 0.00 36.20 4.02
2479 4366 0.770557 TAGTGGGCCTTCCTGTTGGT 60.771 55.000 4.53 0.00 36.20 3.67
2480 4367 0.625849 ATAGTGGGCCTTCCTGTTGG 59.374 55.000 4.53 0.00 36.20 3.77
2481 4368 1.408822 GGATAGTGGGCCTTCCTGTTG 60.409 57.143 4.53 0.00 36.20 3.33
2482 4369 0.919710 GGATAGTGGGCCTTCCTGTT 59.080 55.000 4.53 0.00 36.20 3.16
2483 4370 0.253160 TGGATAGTGGGCCTTCCTGT 60.253 55.000 4.53 0.00 36.20 4.00
2484 4371 0.471617 CTGGATAGTGGGCCTTCCTG 59.528 60.000 4.53 6.50 36.20 3.86
2485 4372 1.348775 GCTGGATAGTGGGCCTTCCT 61.349 60.000 4.53 0.13 36.20 3.36
2486 4373 1.149401 GCTGGATAGTGGGCCTTCC 59.851 63.158 4.53 6.76 0.00 3.46
2487 4374 1.149401 GGCTGGATAGTGGGCCTTC 59.851 63.158 4.53 0.00 41.20 3.46
2488 4375 3.335711 GGCTGGATAGTGGGCCTT 58.664 61.111 4.53 0.00 41.20 4.35
2490 4377 2.049627 CTGAGGCTGGATAGTGGGCC 62.050 65.000 0.00 0.00 44.38 5.80
2491 4378 1.449353 CTGAGGCTGGATAGTGGGC 59.551 63.158 0.00 0.00 0.00 5.36
2492 4379 1.449353 GCTGAGGCTGGATAGTGGG 59.551 63.158 0.00 0.00 35.22 4.61
2493 4380 1.068753 CGCTGAGGCTGGATAGTGG 59.931 63.158 0.00 0.00 36.09 4.00
2494 4381 0.461548 TTCGCTGAGGCTGGATAGTG 59.538 55.000 0.00 0.00 36.09 2.74
2495 4382 0.749649 CTTCGCTGAGGCTGGATAGT 59.250 55.000 0.00 0.00 36.09 2.12
2496 4383 0.599728 GCTTCGCTGAGGCTGGATAG 60.600 60.000 0.00 0.00 31.81 2.08
2497 4384 1.329913 TGCTTCGCTGAGGCTGGATA 61.330 55.000 12.26 0.00 35.64 2.59
2498 4385 2.188994 GCTTCGCTGAGGCTGGAT 59.811 61.111 0.00 0.00 31.81 3.41
2499 4386 3.313524 TGCTTCGCTGAGGCTGGA 61.314 61.111 12.26 0.00 35.64 3.86
2500 4387 2.230994 TAGTGCTTCGCTGAGGCTGG 62.231 60.000 12.26 0.00 35.64 4.85
2501 4388 0.805322 CTAGTGCTTCGCTGAGGCTG 60.805 60.000 12.26 0.00 35.64 4.85
2502 4389 0.967887 TCTAGTGCTTCGCTGAGGCT 60.968 55.000 12.26 0.00 35.64 4.58
2503 4390 0.804156 GTCTAGTGCTTCGCTGAGGC 60.804 60.000 5.87 5.87 35.17 4.70
2504 4391 0.179124 GGTCTAGTGCTTCGCTGAGG 60.179 60.000 0.00 0.00 0.00 3.86
2505 4392 0.179124 GGGTCTAGTGCTTCGCTGAG 60.179 60.000 0.00 0.00 0.00 3.35
2506 4393 1.605058 GGGGTCTAGTGCTTCGCTGA 61.605 60.000 0.00 0.00 0.00 4.26
2507 4394 1.153549 GGGGTCTAGTGCTTCGCTG 60.154 63.158 0.00 0.00 0.00 5.18
2508 4395 2.359967 GGGGGTCTAGTGCTTCGCT 61.360 63.158 0.00 0.00 0.00 4.93
2509 4396 2.187163 GGGGGTCTAGTGCTTCGC 59.813 66.667 0.00 0.00 0.00 4.70
2524 4411 2.343475 ATATGCCAACGCTCAGGGGG 62.343 60.000 0.00 0.00 35.36 5.40
2525 4412 0.886490 GATATGCCAACGCTCAGGGG 60.886 60.000 0.00 0.00 35.36 4.79
2526 4413 0.107456 AGATATGCCAACGCTCAGGG 59.893 55.000 0.00 0.00 35.36 4.45
2527 4414 2.681706 CTAGATATGCCAACGCTCAGG 58.318 52.381 0.00 0.00 35.36 3.86
2528 4415 2.064762 GCTAGATATGCCAACGCTCAG 58.935 52.381 0.00 0.00 35.36 3.35
2529 4416 2.154854 GCTAGATATGCCAACGCTCA 57.845 50.000 0.00 0.00 35.36 4.26
2538 4425 3.997021 AGTTTATGCGTGGCTAGATATGC 59.003 43.478 0.00 0.00 0.00 3.14
2539 4426 5.615544 GCAAGTTTATGCGTGGCTAGATATG 60.616 44.000 0.00 0.00 36.45 1.78
2540 4427 4.452455 GCAAGTTTATGCGTGGCTAGATAT 59.548 41.667 0.00 0.00 36.45 1.63
2541 4428 3.807622 GCAAGTTTATGCGTGGCTAGATA 59.192 43.478 0.00 0.00 36.45 1.98
2542 4429 2.614057 GCAAGTTTATGCGTGGCTAGAT 59.386 45.455 0.00 0.00 36.45 1.98
2543 4430 2.006888 GCAAGTTTATGCGTGGCTAGA 58.993 47.619 0.00 0.00 36.45 2.43
2544 4431 2.458592 GCAAGTTTATGCGTGGCTAG 57.541 50.000 0.00 0.00 36.45 3.42
2552 4439 2.102578 ACATCCCCTGCAAGTTTATGC 58.897 47.619 0.00 0.00 46.58 3.14
2553 4440 4.497300 CAAACATCCCCTGCAAGTTTATG 58.503 43.478 0.00 0.00 31.80 1.90
2554 4441 3.515104 CCAAACATCCCCTGCAAGTTTAT 59.485 43.478 0.00 0.00 31.80 1.40
2555 4442 2.896685 CCAAACATCCCCTGCAAGTTTA 59.103 45.455 0.00 0.00 31.80 2.01
2556 4443 1.693606 CCAAACATCCCCTGCAAGTTT 59.306 47.619 0.00 0.00 33.09 2.66
2557 4444 1.133199 TCCAAACATCCCCTGCAAGTT 60.133 47.619 0.00 0.00 0.00 2.66
2558 4445 0.482446 TCCAAACATCCCCTGCAAGT 59.518 50.000 0.00 0.00 0.00 3.16
2559 4446 1.180029 CTCCAAACATCCCCTGCAAG 58.820 55.000 0.00 0.00 0.00 4.01
2560 4447 0.482446 ACTCCAAACATCCCCTGCAA 59.518 50.000 0.00 0.00 0.00 4.08
2561 4448 0.038166 GACTCCAAACATCCCCTGCA 59.962 55.000 0.00 0.00 0.00 4.41
2562 4449 0.038166 TGACTCCAAACATCCCCTGC 59.962 55.000 0.00 0.00 0.00 4.85
2563 4450 2.814805 ATGACTCCAAACATCCCCTG 57.185 50.000 0.00 0.00 0.00 4.45
2564 4451 5.515534 GCATATATGACTCCAAACATCCCCT 60.516 44.000 17.10 0.00 0.00 4.79
2565 4452 4.702131 GCATATATGACTCCAAACATCCCC 59.298 45.833 17.10 0.00 0.00 4.81
2566 4453 5.316167 TGCATATATGACTCCAAACATCCC 58.684 41.667 17.10 0.00 0.00 3.85
2567 4454 6.656270 TCATGCATATATGACTCCAAACATCC 59.344 38.462 17.10 0.00 32.39 3.51
2568 4455 7.605309 TCTCATGCATATATGACTCCAAACATC 59.395 37.037 17.10 0.00 33.71 3.06
2569 4456 7.455891 TCTCATGCATATATGACTCCAAACAT 58.544 34.615 17.10 4.85 33.71 2.71
2570 4457 6.829849 TCTCATGCATATATGACTCCAAACA 58.170 36.000 17.10 2.63 33.71 2.83
2571 4458 7.918536 ATCTCATGCATATATGACTCCAAAC 57.081 36.000 17.10 0.00 33.71 2.93
2572 4459 9.039165 TCTATCTCATGCATATATGACTCCAAA 57.961 33.333 17.10 0.00 33.71 3.28
2573 4460 8.599624 TCTATCTCATGCATATATGACTCCAA 57.400 34.615 17.10 0.00 33.71 3.53
2574 4461 8.639761 CATCTATCTCATGCATATATGACTCCA 58.360 37.037 17.10 5.14 33.71 3.86
2575 4462 8.640651 ACATCTATCTCATGCATATATGACTCC 58.359 37.037 17.10 0.00 33.71 3.85
2577 4464 9.819267 CAACATCTATCTCATGCATATATGACT 57.181 33.333 17.10 0.00 33.71 3.41
2578 4465 8.549548 GCAACATCTATCTCATGCATATATGAC 58.450 37.037 17.10 8.34 33.71 3.06
2579 4466 7.713942 GGCAACATCTATCTCATGCATATATGA 59.286 37.037 17.10 2.36 35.57 2.15
2580 4467 7.041303 GGGCAACATCTATCTCATGCATATATG 60.041 40.741 8.45 8.45 35.57 1.78
2581 4468 6.996879 GGGCAACATCTATCTCATGCATATAT 59.003 38.462 0.00 0.00 35.57 0.86
2582 4469 6.070078 TGGGCAACATCTATCTCATGCATATA 60.070 38.462 0.00 0.00 35.57 0.86
2583 4470 5.191426 GGGCAACATCTATCTCATGCATAT 58.809 41.667 0.00 0.00 35.57 1.78
2584 4471 4.041938 TGGGCAACATCTATCTCATGCATA 59.958 41.667 0.00 0.00 35.57 3.14
2585 4472 3.181437 TGGGCAACATCTATCTCATGCAT 60.181 43.478 0.00 0.00 35.57 3.96
2586 4473 2.173143 TGGGCAACATCTATCTCATGCA 59.827 45.455 0.00 0.00 35.57 3.96
2587 4474 2.854963 TGGGCAACATCTATCTCATGC 58.145 47.619 0.00 0.00 39.74 4.06
2588 4475 3.756963 CCATGGGCAACATCTATCTCATG 59.243 47.826 2.85 0.00 37.84 3.07
2589 4476 4.030314 CCATGGGCAACATCTATCTCAT 57.970 45.455 2.85 0.00 37.84 2.90
2590 4477 3.497103 CCATGGGCAACATCTATCTCA 57.503 47.619 2.85 0.00 37.84 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.