Multiple sequence alignment - TraesCS7D01G046700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G046700 chr7D 100.000 3188 0 0 1 3188 24119801 24116614 0.000000e+00 5888.0
1 TraesCS7D01G046700 chr7D 92.232 2034 119 26 654 2669 24021570 24019558 0.000000e+00 2844.0
2 TraesCS7D01G046700 chr7D 86.010 193 13 9 504 694 24320032 24320212 9.020000e-46 195.0
3 TraesCS7D01G046700 chr7D 82.456 228 21 12 2975 3188 23528258 23528480 7.020000e-42 182.0
4 TraesCS7D01G046700 chr7D 90.698 129 11 1 705 833 24325920 24326047 1.520000e-38 171.0
5 TraesCS7D01G046700 chr7D 98.750 80 1 0 193 272 381902183 381902262 3.310000e-30 143.0
6 TraesCS7D01G046700 chr7D 79.310 145 24 6 41 183 608444712 608444572 2.620000e-16 97.1
7 TraesCS7D01G046700 chr4A 88.410 1881 180 27 724 2576 707487295 707489165 0.000000e+00 2231.0
8 TraesCS7D01G046700 chr4A 89.940 1670 143 15 969 2619 707674777 707676440 0.000000e+00 2130.0
9 TraesCS7D01G046700 chr4A 87.387 1887 190 30 730 2576 706090074 706088196 0.000000e+00 2122.0
10 TraesCS7D01G046700 chr4A 89.760 1670 146 15 969 2619 707702236 707703899 0.000000e+00 2113.0
11 TraesCS7D01G046700 chr4A 87.189 1889 192 30 730 2576 705954098 705952218 0.000000e+00 2102.0
12 TraesCS7D01G046700 chr4A 86.042 1046 126 12 1377 2421 707260630 707259604 0.000000e+00 1105.0
13 TraesCS7D01G046700 chr4A 81.611 1316 208 20 998 2282 707305504 707304192 0.000000e+00 1059.0
14 TraesCS7D01G046700 chr4A 83.285 694 79 21 172 848 707306179 707305506 3.520000e-169 604.0
15 TraesCS7D01G046700 chr4A 82.838 606 82 14 1 603 707322363 707322949 1.010000e-144 523.0
16 TraesCS7D01G046700 chr4A 90.123 162 14 2 731 891 707509715 707509875 3.220000e-50 209.0
17 TraesCS7D01G046700 chr4A 98.750 80 1 0 193 272 137893995 137894074 3.310000e-30 143.0
18 TraesCS7D01G046700 chrUn 87.328 1886 192 30 730 2576 220049736 220047859 0.000000e+00 2115.0
19 TraesCS7D01G046700 chrUn 98.750 80 1 0 193 272 86461212 86461133 3.310000e-30 143.0
20 TraesCS7D01G046700 chrUn 98.750 80 1 0 193 272 222674062 222674141 3.310000e-30 143.0
21 TraesCS7D01G046700 chr1A 84.536 582 72 7 895 1475 375863094 375862530 7.720000e-156 560.0
22 TraesCS7D01G046700 chr1A 98.750 80 1 0 193 272 238127505 238127426 3.310000e-30 143.0
23 TraesCS7D01G046700 chr6D 74.907 805 169 24 1273 2065 386465563 386464780 1.420000e-88 337.0
24 TraesCS7D01G046700 chr6D 98.750 80 1 0 193 272 168781412 168781333 3.310000e-30 143.0
25 TraesCS7D01G046700 chr6A 79.362 470 89 6 1273 1738 531698313 531697848 1.100000e-84 324.0
26 TraesCS7D01G046700 chr4D 98.750 80 1 0 193 272 123635277 123635198 3.310000e-30 143.0
27 TraesCS7D01G046700 chr4D 97.500 80 2 0 193 272 241208802 241208881 1.540000e-28 137.0
28 TraesCS7D01G046700 chr3D 78.571 140 19 7 2834 2971 410303570 410303700 7.330000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G046700 chr7D 24116614 24119801 3187 True 5888.0 5888 100.000 1 3188 1 chr7D.!!$R2 3187
1 TraesCS7D01G046700 chr7D 24019558 24021570 2012 True 2844.0 2844 92.232 654 2669 1 chr7D.!!$R1 2015
2 TraesCS7D01G046700 chr4A 707487295 707489165 1870 False 2231.0 2231 88.410 724 2576 1 chr4A.!!$F3 1852
3 TraesCS7D01G046700 chr4A 707674777 707676440 1663 False 2130.0 2130 89.940 969 2619 1 chr4A.!!$F5 1650
4 TraesCS7D01G046700 chr4A 706088196 706090074 1878 True 2122.0 2122 87.387 730 2576 1 chr4A.!!$R2 1846
5 TraesCS7D01G046700 chr4A 707702236 707703899 1663 False 2113.0 2113 89.760 969 2619 1 chr4A.!!$F6 1650
6 TraesCS7D01G046700 chr4A 705952218 705954098 1880 True 2102.0 2102 87.189 730 2576 1 chr4A.!!$R1 1846
7 TraesCS7D01G046700 chr4A 707259604 707260630 1026 True 1105.0 1105 86.042 1377 2421 1 chr4A.!!$R3 1044
8 TraesCS7D01G046700 chr4A 707304192 707306179 1987 True 831.5 1059 82.448 172 2282 2 chr4A.!!$R4 2110
9 TraesCS7D01G046700 chr4A 707322363 707322949 586 False 523.0 523 82.838 1 603 1 chr4A.!!$F2 602
10 TraesCS7D01G046700 chrUn 220047859 220049736 1877 True 2115.0 2115 87.328 730 2576 1 chrUn.!!$R2 1846
11 TraesCS7D01G046700 chr1A 375862530 375863094 564 True 560.0 560 84.536 895 1475 1 chr1A.!!$R2 580
12 TraesCS7D01G046700 chr6D 386464780 386465563 783 True 337.0 337 74.907 1273 2065 1 chr6D.!!$R2 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.608035 GCCAAATTCGGTGACCCTGA 60.608 55.000 0.0 0.0 0.0 3.86 F
1168 1212 1.227556 GTCACCAACAGCGACCACT 60.228 57.895 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1177 1221 0.178975 TTGGCGAAGGTGGGTTTGAT 60.179 50.0 0.0 0.0 0.00 2.57 R
3071 3184 0.177141 CAAAGGAATCCCGTCCGCTA 59.823 55.0 0.0 0.0 43.03 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.170965 ACAAGTCTGTTTCATAGTCCATTCAT 58.829 34.615 0.00 0.00 28.57 2.57
44 45 8.932610 AGTCTGTTTCATAGTCCATTCATATCT 58.067 33.333 0.00 0.00 0.00 1.98
62 63 8.637196 TCATATCTATGTCCGTTTCATAGTCT 57.363 34.615 14.07 8.70 42.82 3.24
63 64 8.515414 TCATATCTATGTCCGTTTCATAGTCTG 58.485 37.037 14.07 11.25 42.82 3.51
73 74 4.317628 CGTTTCATAGTCTGTGCGATGATG 60.318 45.833 0.00 0.00 32.21 3.07
90 91 7.222999 TGCGATGATGTACGTAATTTATGTTCA 59.777 33.333 6.60 8.27 31.13 3.18
91 92 7.526186 GCGATGATGTACGTAATTTATGTTCAC 59.474 37.037 6.60 1.55 29.66 3.18
96 97 7.405469 TGTACGTAATTTATGTTCACGTTGT 57.595 32.000 6.60 0.00 42.69 3.32
98 99 9.138062 TGTACGTAATTTATGTTCACGTTGTAT 57.862 29.630 6.60 0.00 42.69 2.29
100 101 8.020861 ACGTAATTTATGTTCACGTTGTATGT 57.979 30.769 0.00 0.00 42.69 2.29
101 102 7.953173 ACGTAATTTATGTTCACGTTGTATGTG 59.047 33.333 0.00 0.00 42.69 3.21
107 108 9.642327 TTTATGTTCACGTTGTATGTGTAGTAT 57.358 29.630 0.00 0.00 36.53 2.12
110 111 4.426416 TCACGTTGTATGTGTAGTATGGC 58.574 43.478 0.00 0.00 36.53 4.40
117 118 7.321153 GTTGTATGTGTAGTATGGCTATAGGG 58.679 42.308 1.04 0.00 31.50 3.53
123 124 7.419203 TGTGTAGTATGGCTATAGGGTATCAT 58.581 38.462 1.04 0.00 31.50 2.45
126 127 9.809395 TGTAGTATGGCTATAGGGTATCATATC 57.191 37.037 1.04 0.00 31.50 1.63
130 131 9.019656 GTATGGCTATAGGGTATCATATCTGAG 57.980 40.741 1.04 0.00 34.12 3.35
133 134 6.719370 GGCTATAGGGTATCATATCTGAGGAG 59.281 46.154 1.04 0.00 34.12 3.69
138 139 4.469227 GGGTATCATATCTGAGGAGTGCAT 59.531 45.833 0.00 0.00 34.12 3.96
144 145 6.852704 ATCATATCTGAGGAGTGCATATGTGC 60.853 42.308 7.61 7.61 42.52 4.57
168 169 2.159382 ACACAAATTTAGGAGTGCCCG 58.841 47.619 6.35 0.00 40.87 6.13
247 248 2.048603 GCATTCCTGTGACCTGGCC 61.049 63.158 0.00 0.00 0.00 5.36
257 258 0.908910 TGACCTGGCCGTATGAATGT 59.091 50.000 0.00 0.00 0.00 2.71
281 282 3.122480 TCTTTCTCAATATGAGGGGCCA 58.878 45.455 4.39 0.00 44.39 5.36
297 298 0.608035 GCCAAATTCGGTGACCCTGA 60.608 55.000 0.00 0.00 0.00 3.86
325 326 8.585881 TCTAGATGCTCTTACCCATTACAATAC 58.414 37.037 0.00 0.00 0.00 1.89
372 373 6.698008 TGAGACTTTTCAATGCTCTTTGAA 57.302 33.333 6.79 6.79 42.33 2.69
394 396 8.241497 TGAAAAGTAGTACCAGTTCTCAAGTA 57.759 34.615 0.00 0.00 0.00 2.24
398 400 4.129317 AGTACCAGTTCTCAAGTAGGGT 57.871 45.455 0.00 0.00 0.00 4.34
399 401 4.490706 AGTACCAGTTCTCAAGTAGGGTT 58.509 43.478 0.00 0.00 0.00 4.11
459 461 1.722034 ACCAGTTCTCAAGCTCCAGA 58.278 50.000 0.00 0.00 0.00 3.86
475 477 4.557496 GCTCCAGAGTGAAAAACAATCACC 60.557 45.833 3.23 0.00 46.60 4.02
488 490 2.848694 ACAATCACCACCTCCATCTGAT 59.151 45.455 0.00 0.00 0.00 2.90
497 500 5.070981 ACCACCTCCATCTGATGTATGTAAG 59.929 44.000 15.95 7.33 0.00 2.34
532 537 2.507886 TGTGGGTCTCAACTTTGGAAGA 59.492 45.455 0.00 0.00 0.00 2.87
597 611 6.488344 TGATCTGTATATCTGTTCTTCTCGCT 59.512 38.462 0.00 0.00 0.00 4.93
650 664 2.622436 GGAGTACTTGATGTGGCTCAC 58.378 52.381 0.00 0.00 35.34 3.51
857 876 4.145807 AGGTAGCTCGCTCAATACATACT 58.854 43.478 0.00 0.00 0.00 2.12
858 877 5.314529 AGGTAGCTCGCTCAATACATACTA 58.685 41.667 0.00 0.00 0.00 1.82
859 878 5.181622 AGGTAGCTCGCTCAATACATACTAC 59.818 44.000 0.00 0.00 0.00 2.73
860 879 5.181622 GGTAGCTCGCTCAATACATACTACT 59.818 44.000 0.00 0.00 0.00 2.57
861 880 6.370994 GGTAGCTCGCTCAATACATACTACTA 59.629 42.308 0.00 0.00 0.00 1.82
862 881 7.066043 GGTAGCTCGCTCAATACATACTACTAT 59.934 40.741 0.00 0.00 0.00 2.12
863 882 7.455641 AGCTCGCTCAATACATACTACTATT 57.544 36.000 0.00 0.00 0.00 1.73
864 883 8.563123 AGCTCGCTCAATACATACTACTATTA 57.437 34.615 0.00 0.00 0.00 0.98
909 949 7.713518 TCATCCAACTCTATCAGGTAGGATAT 58.286 38.462 0.00 0.00 31.48 1.63
1168 1212 1.227556 GTCACCAACAGCGACCACT 60.228 57.895 0.00 0.00 0.00 4.00
1177 1221 2.028484 GCGACCACTTCACCGACA 59.972 61.111 0.00 0.00 0.00 4.35
1182 1226 2.489971 GACCACTTCACCGACATCAAA 58.510 47.619 0.00 0.00 0.00 2.69
1264 1308 4.609018 AACTGCTCGCCACGCACT 62.609 61.111 0.00 0.00 33.19 4.40
1492 1536 2.743928 CCGTGCTCCAGCTCAACC 60.744 66.667 0.00 0.00 42.66 3.77
1605 1649 4.980805 GTCACCGCCTTCCACGCA 62.981 66.667 0.00 0.00 0.00 5.24
1638 1682 1.822990 GACACCTTCGACACCCTCATA 59.177 52.381 0.00 0.00 0.00 2.15
1880 1933 1.005394 CGTTCGGCAACCACCTAGT 60.005 57.895 0.00 0.00 0.00 2.57
2105 2164 1.521616 CTGAAGGAGAGGGAGCTGC 59.478 63.158 0.00 0.00 0.00 5.25
2188 2248 3.300934 CTGCACGCTGCCACCTAGA 62.301 63.158 7.38 0.00 44.23 2.43
2238 2319 9.690913 ACACATGGCATATATATTCAATAAGCT 57.309 29.630 0.00 0.00 0.00 3.74
2307 2388 8.850452 CGTATATGTACGTACGTGTAAGAGATA 58.150 37.037 30.25 17.45 46.51 1.98
2332 2416 1.875514 CATGTGGTGTGAGAGTGGTTG 59.124 52.381 0.00 0.00 0.00 3.77
2415 2499 6.482973 AGTTGCTTGAATTGTAAATTTGGGTG 59.517 34.615 0.00 0.00 0.00 4.61
2428 2512 7.662258 TGTAAATTTGGGTGAGTCGATTTCTTA 59.338 33.333 0.00 0.00 0.00 2.10
2429 2513 7.703058 AAATTTGGGTGAGTCGATTTCTTAT 57.297 32.000 0.00 0.00 0.00 1.73
2454 2542 7.443477 TCCATTCATTTTTGCTCTGAAATTCA 58.557 30.769 0.00 0.00 33.03 2.57
2461 2549 6.579666 TTTTGCTCTGAAATTCATGCTACT 57.420 33.333 17.28 0.00 30.64 2.57
2462 2550 5.808042 TTGCTCTGAAATTCATGCTACTC 57.192 39.130 17.28 0.00 30.64 2.59
2488 2580 0.811616 CTGGACTATCGTGGGCTTGC 60.812 60.000 0.00 0.00 0.00 4.01
2495 2587 0.318120 ATCGTGGGCTTGCTTTTTGG 59.682 50.000 0.00 0.00 0.00 3.28
2501 2593 1.269778 GGGCTTGCTTTTTGGACTGAC 60.270 52.381 0.00 0.00 0.00 3.51
2502 2594 1.269778 GGCTTGCTTTTTGGACTGACC 60.270 52.381 0.00 0.00 39.54 4.02
2504 2596 2.101415 GCTTGCTTTTTGGACTGACCTT 59.899 45.455 0.00 0.00 39.86 3.50
2505 2597 3.317993 GCTTGCTTTTTGGACTGACCTTA 59.682 43.478 0.00 0.00 39.86 2.69
2506 2598 4.021981 GCTTGCTTTTTGGACTGACCTTAT 60.022 41.667 0.00 0.00 39.86 1.73
2507 2599 5.703876 CTTGCTTTTTGGACTGACCTTATC 58.296 41.667 0.00 0.00 39.86 1.75
2508 2600 4.724399 TGCTTTTTGGACTGACCTTATCA 58.276 39.130 0.00 0.00 39.86 2.15
2548 2654 0.451783 GAAGCCCATTAGTTGTGCGG 59.548 55.000 0.00 0.00 33.43 5.69
2559 2665 3.113514 TTGTGCGGTCAAGCCCTCA 62.114 57.895 0.00 0.00 36.02 3.86
2579 2685 6.070538 CCCTCATCTCTCTTCCTTTGTTTCTA 60.071 42.308 0.00 0.00 0.00 2.10
2580 2686 7.390027 CCTCATCTCTCTTCCTTTGTTTCTAA 58.610 38.462 0.00 0.00 0.00 2.10
2581 2687 8.046107 CCTCATCTCTCTTCCTTTGTTTCTAAT 58.954 37.037 0.00 0.00 0.00 1.73
2621 2727 7.743520 TTTATGTGTTTCCGTCTTTGTTTTC 57.256 32.000 0.00 0.00 0.00 2.29
2622 2728 5.576447 ATGTGTTTCCGTCTTTGTTTTCT 57.424 34.783 0.00 0.00 0.00 2.52
2623 2729 5.379732 TGTGTTTCCGTCTTTGTTTTCTT 57.620 34.783 0.00 0.00 0.00 2.52
2655 2768 9.508642 AGTTGGTTTTTATTTTCTTTTGTGGAA 57.491 25.926 0.00 0.00 0.00 3.53
2669 2782 7.164803 TCTTTTGTGGAAATTTTTGGAGTGTT 58.835 30.769 0.00 0.00 0.00 3.32
2670 2783 6.734104 TTTGTGGAAATTTTTGGAGTGTTG 57.266 33.333 0.00 0.00 0.00 3.33
2671 2784 4.764172 TGTGGAAATTTTTGGAGTGTTGG 58.236 39.130 0.00 0.00 0.00 3.77
2672 2785 4.126437 GTGGAAATTTTTGGAGTGTTGGG 58.874 43.478 0.00 0.00 0.00 4.12
2673 2786 3.777522 TGGAAATTTTTGGAGTGTTGGGT 59.222 39.130 0.00 0.00 0.00 4.51
2674 2787 4.126437 GGAAATTTTTGGAGTGTTGGGTG 58.874 43.478 0.00 0.00 0.00 4.61
2675 2788 4.141824 GGAAATTTTTGGAGTGTTGGGTGA 60.142 41.667 0.00 0.00 0.00 4.02
2676 2789 4.670896 AATTTTTGGAGTGTTGGGTGAG 57.329 40.909 0.00 0.00 0.00 3.51
2677 2790 2.818751 TTTTGGAGTGTTGGGTGAGT 57.181 45.000 0.00 0.00 0.00 3.41
2678 2791 2.051334 TTTGGAGTGTTGGGTGAGTG 57.949 50.000 0.00 0.00 0.00 3.51
2679 2792 0.916086 TTGGAGTGTTGGGTGAGTGT 59.084 50.000 0.00 0.00 0.00 3.55
2680 2793 1.796017 TGGAGTGTTGGGTGAGTGTA 58.204 50.000 0.00 0.00 0.00 2.90
2681 2794 2.120312 TGGAGTGTTGGGTGAGTGTAA 58.880 47.619 0.00 0.00 0.00 2.41
2682 2795 2.506231 TGGAGTGTTGGGTGAGTGTAAA 59.494 45.455 0.00 0.00 0.00 2.01
2683 2796 3.137544 TGGAGTGTTGGGTGAGTGTAAAT 59.862 43.478 0.00 0.00 0.00 1.40
2684 2797 3.502211 GGAGTGTTGGGTGAGTGTAAATG 59.498 47.826 0.00 0.00 0.00 2.32
2685 2798 4.134563 GAGTGTTGGGTGAGTGTAAATGT 58.865 43.478 0.00 0.00 0.00 2.71
2686 2799 5.298989 AGTGTTGGGTGAGTGTAAATGTA 57.701 39.130 0.00 0.00 0.00 2.29
2687 2800 5.686753 AGTGTTGGGTGAGTGTAAATGTAA 58.313 37.500 0.00 0.00 0.00 2.41
2688 2801 6.123651 AGTGTTGGGTGAGTGTAAATGTAAA 58.876 36.000 0.00 0.00 0.00 2.01
2689 2802 6.038936 AGTGTTGGGTGAGTGTAAATGTAAAC 59.961 38.462 0.00 0.00 0.00 2.01
2690 2803 5.886474 TGTTGGGTGAGTGTAAATGTAAACA 59.114 36.000 0.00 0.00 0.00 2.83
2691 2804 6.183360 TGTTGGGTGAGTGTAAATGTAAACAC 60.183 38.462 0.00 0.00 45.06 3.32
2692 2805 5.437946 TGGGTGAGTGTAAATGTAAACACA 58.562 37.500 8.18 0.00 46.71 3.72
2693 2806 6.065374 TGGGTGAGTGTAAATGTAAACACAT 58.935 36.000 8.18 0.00 46.71 3.21
2694 2807 7.225011 TGGGTGAGTGTAAATGTAAACACATA 58.775 34.615 8.18 0.00 46.71 2.29
2695 2808 7.720074 TGGGTGAGTGTAAATGTAAACACATAA 59.280 33.333 8.18 0.00 46.71 1.90
2696 2809 8.569641 GGGTGAGTGTAAATGTAAACACATAAA 58.430 33.333 8.18 0.00 46.71 1.40
2713 2826 8.110860 ACACATAAATACTATGCAATAAGGGC 57.889 34.615 0.00 0.00 0.00 5.19
2714 2827 7.094805 ACACATAAATACTATGCAATAAGGGCG 60.095 37.037 0.00 0.00 0.00 6.13
2715 2828 7.119116 CACATAAATACTATGCAATAAGGGCGA 59.881 37.037 0.00 0.00 0.00 5.54
2716 2829 7.829211 ACATAAATACTATGCAATAAGGGCGAT 59.171 33.333 0.00 0.00 0.00 4.58
2717 2830 9.325198 CATAAATACTATGCAATAAGGGCGATA 57.675 33.333 0.00 0.00 0.00 2.92
2718 2831 9.899661 ATAAATACTATGCAATAAGGGCGATAA 57.100 29.630 0.00 0.00 0.00 1.75
2719 2832 8.807948 AAATACTATGCAATAAGGGCGATAAT 57.192 30.769 0.00 0.00 0.00 1.28
2720 2833 8.807948 AATACTATGCAATAAGGGCGATAATT 57.192 30.769 0.00 0.00 0.00 1.40
2721 2834 9.899661 AATACTATGCAATAAGGGCGATAATTA 57.100 29.630 0.00 0.00 0.00 1.40
2722 2835 7.611213 ACTATGCAATAAGGGCGATAATTAC 57.389 36.000 0.00 0.00 0.00 1.89
2723 2836 7.165485 ACTATGCAATAAGGGCGATAATTACA 58.835 34.615 0.00 0.00 0.00 2.41
2724 2837 7.829211 ACTATGCAATAAGGGCGATAATTACAT 59.171 33.333 0.00 0.00 0.00 2.29
2725 2838 6.892658 TGCAATAAGGGCGATAATTACATT 57.107 33.333 0.00 0.00 0.00 2.71
2726 2839 7.987750 TGCAATAAGGGCGATAATTACATTA 57.012 32.000 0.00 0.00 0.00 1.90
2727 2840 8.574251 TGCAATAAGGGCGATAATTACATTAT 57.426 30.769 0.00 0.00 38.12 1.28
2728 2841 8.673711 TGCAATAAGGGCGATAATTACATTATC 58.326 33.333 6.46 6.46 44.79 1.75
2758 2871 9.853555 TGACTATTTTTAACAGCAATACCAATG 57.146 29.630 0.00 0.00 0.00 2.82
2759 2872 8.702163 ACTATTTTTAACAGCAATACCAATGC 57.298 30.769 0.00 0.00 44.15 3.56
2760 2873 6.983474 ATTTTTAACAGCAATACCAATGCC 57.017 33.333 0.00 0.00 44.91 4.40
2761 2874 5.474578 TTTTAACAGCAATACCAATGCCA 57.525 34.783 0.00 0.00 44.91 4.92
2762 2875 4.448537 TTAACAGCAATACCAATGCCAC 57.551 40.909 0.00 0.00 44.91 5.01
2763 2876 2.220653 ACAGCAATACCAATGCCACT 57.779 45.000 0.00 0.00 44.91 4.00
2764 2877 3.364460 ACAGCAATACCAATGCCACTA 57.636 42.857 0.00 0.00 44.91 2.74
2765 2878 3.902218 ACAGCAATACCAATGCCACTAT 58.098 40.909 0.00 0.00 44.91 2.12
2766 2879 4.280819 ACAGCAATACCAATGCCACTATT 58.719 39.130 0.00 0.00 44.91 1.73
2767 2880 5.445069 ACAGCAATACCAATGCCACTATTA 58.555 37.500 0.00 0.00 44.91 0.98
2768 2881 5.532406 ACAGCAATACCAATGCCACTATTAG 59.468 40.000 0.00 0.00 44.91 1.73
2769 2882 5.764686 CAGCAATACCAATGCCACTATTAGA 59.235 40.000 0.00 0.00 44.91 2.10
2770 2883 6.432162 CAGCAATACCAATGCCACTATTAGAT 59.568 38.462 0.00 0.00 44.91 1.98
2771 2884 7.607607 CAGCAATACCAATGCCACTATTAGATA 59.392 37.037 0.00 0.00 44.91 1.98
2772 2885 8.163408 AGCAATACCAATGCCACTATTAGATAA 58.837 33.333 0.00 0.00 44.91 1.75
2773 2886 8.960591 GCAATACCAATGCCACTATTAGATAAT 58.039 33.333 0.00 0.00 37.85 1.28
2807 2920 7.672983 AAACATCTAATAGTGAATATGGGCG 57.327 36.000 0.00 0.00 0.00 6.13
2808 2921 6.605471 ACATCTAATAGTGAATATGGGCGA 57.395 37.500 0.00 0.00 0.00 5.54
2809 2922 7.187824 ACATCTAATAGTGAATATGGGCGAT 57.812 36.000 0.00 0.00 0.00 4.58
2810 2923 8.306313 ACATCTAATAGTGAATATGGGCGATA 57.694 34.615 0.00 0.00 0.00 2.92
2811 2924 8.758829 ACATCTAATAGTGAATATGGGCGATAA 58.241 33.333 0.00 0.00 0.00 1.75
2812 2925 9.770097 CATCTAATAGTGAATATGGGCGATAAT 57.230 33.333 0.00 0.00 0.00 1.28
2817 2930 9.905713 AATAGTGAATATGGGCGATAATTACAT 57.094 29.630 3.12 0.00 0.00 2.29
2820 2933 9.733556 AGTGAATATGGGCGATAATTACATAAA 57.266 29.630 3.12 0.00 0.00 1.40
2825 2938 7.833285 ATGGGCGATAATTACATAAAAACCT 57.167 32.000 0.00 0.00 0.00 3.50
2826 2939 8.927675 ATGGGCGATAATTACATAAAAACCTA 57.072 30.769 0.00 0.00 0.00 3.08
2827 2940 8.749026 TGGGCGATAATTACATAAAAACCTAA 57.251 30.769 0.00 0.00 0.00 2.69
2828 2941 9.357161 TGGGCGATAATTACATAAAAACCTAAT 57.643 29.630 0.00 0.00 0.00 1.73
2829 2942 9.620660 GGGCGATAATTACATAAAAACCTAATG 57.379 33.333 0.00 0.00 0.00 1.90
2917 3030 9.663904 TCTTGAATATTCATTATAACAAAGCGC 57.336 29.630 18.61 0.00 37.00 5.92
2918 3031 9.449550 CTTGAATATTCATTATAACAAAGCGCA 57.550 29.630 18.61 0.00 37.00 6.09
2919 3032 9.794685 TTGAATATTCATTATAACAAAGCGCAA 57.205 25.926 18.61 0.00 37.00 4.85
2920 3033 9.964303 TGAATATTCATTATAACAAAGCGCAAT 57.036 25.926 14.23 0.00 31.01 3.56
2924 3037 8.931385 ATTCATTATAACAAAGCGCAATTCTT 57.069 26.923 11.47 0.64 0.00 2.52
2925 3038 7.739022 TCATTATAACAAAGCGCAATTCTTG 57.261 32.000 11.47 7.39 0.00 3.02
2926 3039 7.312154 TCATTATAACAAAGCGCAATTCTTGT 58.688 30.769 11.47 8.06 0.00 3.16
2927 3040 6.926280 TTATAACAAAGCGCAATTCTTGTG 57.074 33.333 11.47 0.00 43.79 3.33
2928 3041 2.869233 ACAAAGCGCAATTCTTGTGT 57.131 40.000 11.47 0.00 42.92 3.72
2929 3042 3.980646 ACAAAGCGCAATTCTTGTGTA 57.019 38.095 11.47 0.00 42.92 2.90
2930 3043 4.300189 ACAAAGCGCAATTCTTGTGTAA 57.700 36.364 11.47 0.00 42.92 2.41
2931 3044 4.870363 ACAAAGCGCAATTCTTGTGTAAT 58.130 34.783 11.47 0.00 42.92 1.89
2932 3045 5.288804 ACAAAGCGCAATTCTTGTGTAATT 58.711 33.333 11.47 0.00 42.92 1.40
2933 3046 5.752955 ACAAAGCGCAATTCTTGTGTAATTT 59.247 32.000 11.47 0.00 42.92 1.82
2934 3047 5.827568 AAGCGCAATTCTTGTGTAATTTG 57.172 34.783 11.47 0.00 42.92 2.32
2935 3048 4.236935 AGCGCAATTCTTGTGTAATTTGG 58.763 39.130 11.47 0.00 42.92 3.28
2936 3049 3.367630 GCGCAATTCTTGTGTAATTTGGG 59.632 43.478 0.30 0.00 42.92 4.12
2937 3050 4.555262 CGCAATTCTTGTGTAATTTGGGT 58.445 39.130 0.00 0.00 36.45 4.51
2938 3051 4.385447 CGCAATTCTTGTGTAATTTGGGTG 59.615 41.667 0.00 0.00 36.45 4.61
2939 3052 4.152223 GCAATTCTTGTGTAATTTGGGTGC 59.848 41.667 0.00 0.00 0.00 5.01
2940 3053 5.295950 CAATTCTTGTGTAATTTGGGTGCA 58.704 37.500 0.00 0.00 0.00 4.57
2941 3054 5.543507 ATTCTTGTGTAATTTGGGTGCAA 57.456 34.783 0.00 0.00 0.00 4.08
2942 3055 5.543507 TTCTTGTGTAATTTGGGTGCAAT 57.456 34.783 0.00 0.00 0.00 3.56
2943 3056 5.543507 TCTTGTGTAATTTGGGTGCAATT 57.456 34.783 0.00 0.00 0.00 2.32
2944 3057 5.923204 TCTTGTGTAATTTGGGTGCAATTT 58.077 33.333 0.00 0.00 0.00 1.82
2945 3058 6.352516 TCTTGTGTAATTTGGGTGCAATTTT 58.647 32.000 0.00 0.00 0.00 1.82
2946 3059 6.825721 TCTTGTGTAATTTGGGTGCAATTTTT 59.174 30.769 0.00 0.00 0.00 1.94
3015 3128 9.528018 TTATCTTTCACTTTGTTTCAATGGTTC 57.472 29.630 0.00 0.00 0.00 3.62
3016 3129 7.169158 TCTTTCACTTTGTTTCAATGGTTCT 57.831 32.000 0.00 0.00 0.00 3.01
3017 3130 8.287439 TCTTTCACTTTGTTTCAATGGTTCTA 57.713 30.769 0.00 0.00 0.00 2.10
3018 3131 8.405531 TCTTTCACTTTGTTTCAATGGTTCTAG 58.594 33.333 0.00 0.00 0.00 2.43
3019 3132 6.633500 TCACTTTGTTTCAATGGTTCTAGG 57.367 37.500 0.00 0.00 0.00 3.02
3020 3133 5.534654 TCACTTTGTTTCAATGGTTCTAGGG 59.465 40.000 0.00 0.00 0.00 3.53
3021 3134 4.832823 ACTTTGTTTCAATGGTTCTAGGGG 59.167 41.667 0.00 0.00 0.00 4.79
3022 3135 4.733077 TTGTTTCAATGGTTCTAGGGGA 57.267 40.909 0.00 0.00 0.00 4.81
3023 3136 4.733077 TGTTTCAATGGTTCTAGGGGAA 57.267 40.909 0.00 0.00 0.00 3.97
3030 3143 3.875865 GTTCTAGGGGAACGCCAAT 57.124 52.632 10.35 0.00 43.75 3.16
3031 3144 1.379527 GTTCTAGGGGAACGCCAATG 58.620 55.000 10.35 0.75 43.75 2.82
3032 3145 1.065709 GTTCTAGGGGAACGCCAATGA 60.066 52.381 10.35 2.88 43.75 2.57
3033 3146 1.507140 TCTAGGGGAACGCCAATGAT 58.493 50.000 10.35 0.00 44.92 2.45
3034 3147 1.416401 TCTAGGGGAACGCCAATGATC 59.584 52.381 10.35 0.00 44.92 2.92
3035 3148 1.417890 CTAGGGGAACGCCAATGATCT 59.582 52.381 10.35 0.00 44.92 2.75
3036 3149 0.625849 AGGGGAACGCCAATGATCTT 59.374 50.000 10.35 0.00 44.92 2.40
3037 3150 0.740737 GGGGAACGCCAATGATCTTG 59.259 55.000 3.04 0.00 35.15 3.02
3038 3151 1.681780 GGGGAACGCCAATGATCTTGA 60.682 52.381 3.04 0.00 35.15 3.02
3039 3152 1.401905 GGGAACGCCAATGATCTTGAC 59.598 52.381 0.00 0.00 35.15 3.18
3040 3153 2.359900 GGAACGCCAATGATCTTGACT 58.640 47.619 0.00 0.00 0.00 3.41
3041 3154 2.749621 GGAACGCCAATGATCTTGACTT 59.250 45.455 0.00 0.00 0.00 3.01
3042 3155 3.938963 GGAACGCCAATGATCTTGACTTA 59.061 43.478 0.00 0.00 0.00 2.24
3043 3156 4.394920 GGAACGCCAATGATCTTGACTTAA 59.605 41.667 0.00 0.00 0.00 1.85
3044 3157 5.106317 GGAACGCCAATGATCTTGACTTAAA 60.106 40.000 0.00 0.00 0.00 1.52
3045 3158 5.957842 ACGCCAATGATCTTGACTTAAAA 57.042 34.783 0.00 0.00 0.00 1.52
3046 3159 6.515272 ACGCCAATGATCTTGACTTAAAAT 57.485 33.333 0.00 0.00 0.00 1.82
3047 3160 6.924111 ACGCCAATGATCTTGACTTAAAATT 58.076 32.000 0.00 0.00 0.00 1.82
3048 3161 7.378181 ACGCCAATGATCTTGACTTAAAATTT 58.622 30.769 0.00 0.00 0.00 1.82
3049 3162 7.872483 ACGCCAATGATCTTGACTTAAAATTTT 59.128 29.630 8.75 8.75 0.00 1.82
3050 3163 8.164153 CGCCAATGATCTTGACTTAAAATTTTG 58.836 33.333 13.76 0.22 0.00 2.44
3051 3164 9.206870 GCCAATGATCTTGACTTAAAATTTTGA 57.793 29.630 13.76 4.40 0.00 2.69
3076 3189 9.994432 GAATTATTCATGATTAGGAAATAGCGG 57.006 33.333 0.00 0.00 29.52 5.52
3077 3190 9.739276 AATTATTCATGATTAGGAAATAGCGGA 57.261 29.630 0.00 0.00 29.52 5.54
3078 3191 8.547967 TTATTCATGATTAGGAAATAGCGGAC 57.452 34.615 0.00 0.00 29.52 4.79
3079 3192 4.556233 TCATGATTAGGAAATAGCGGACG 58.444 43.478 0.00 0.00 0.00 4.79
3080 3193 3.380479 TGATTAGGAAATAGCGGACGG 57.620 47.619 0.00 0.00 0.00 4.79
3081 3194 2.036733 TGATTAGGAAATAGCGGACGGG 59.963 50.000 0.00 0.00 0.00 5.28
3082 3195 1.779221 TTAGGAAATAGCGGACGGGA 58.221 50.000 0.00 0.00 0.00 5.14
3083 3196 2.005370 TAGGAAATAGCGGACGGGAT 57.995 50.000 0.00 0.00 0.00 3.85
3084 3197 1.129058 AGGAAATAGCGGACGGGATT 58.871 50.000 0.00 0.00 0.00 3.01
3085 3198 1.070289 AGGAAATAGCGGACGGGATTC 59.930 52.381 0.00 0.00 0.00 2.52
3086 3199 1.509703 GAAATAGCGGACGGGATTCC 58.490 55.000 0.00 0.00 0.00 3.01
3087 3200 1.070289 GAAATAGCGGACGGGATTCCT 59.930 52.381 2.01 0.00 32.88 3.36
3088 3201 1.129058 AATAGCGGACGGGATTCCTT 58.871 50.000 2.01 0.00 32.88 3.36
3089 3202 1.129058 ATAGCGGACGGGATTCCTTT 58.871 50.000 2.01 0.00 32.88 3.11
3090 3203 0.177141 TAGCGGACGGGATTCCTTTG 59.823 55.000 2.01 0.00 32.88 2.77
3091 3204 2.112815 GCGGACGGGATTCCTTTGG 61.113 63.158 2.01 0.00 32.88 3.28
3092 3205 1.298667 CGGACGGGATTCCTTTGGT 59.701 57.895 2.01 0.00 32.88 3.67
3093 3206 0.743345 CGGACGGGATTCCTTTGGTC 60.743 60.000 2.01 5.61 32.88 4.02
3094 3207 0.618981 GGACGGGATTCCTTTGGTCT 59.381 55.000 2.01 0.00 32.24 3.85
3095 3208 1.835531 GGACGGGATTCCTTTGGTCTA 59.164 52.381 2.01 0.00 32.24 2.59
3096 3209 2.438392 GGACGGGATTCCTTTGGTCTAT 59.562 50.000 2.01 0.00 32.24 1.98
3097 3210 3.118000 GGACGGGATTCCTTTGGTCTATT 60.118 47.826 2.01 0.00 32.24 1.73
3098 3211 4.524053 GACGGGATTCCTTTGGTCTATTT 58.476 43.478 2.01 0.00 0.00 1.40
3099 3212 5.397109 GGACGGGATTCCTTTGGTCTATTTA 60.397 44.000 2.01 0.00 32.24 1.40
3100 3213 5.434408 ACGGGATTCCTTTGGTCTATTTAC 58.566 41.667 2.01 0.00 0.00 2.01
3101 3214 4.510340 CGGGATTCCTTTGGTCTATTTACG 59.490 45.833 2.01 0.00 0.00 3.18
3102 3215 5.677567 GGGATTCCTTTGGTCTATTTACGA 58.322 41.667 2.01 0.00 0.00 3.43
3103 3216 5.526479 GGGATTCCTTTGGTCTATTTACGAC 59.474 44.000 2.01 0.00 0.00 4.34
3104 3217 6.346896 GGATTCCTTTGGTCTATTTACGACT 58.653 40.000 0.00 0.00 0.00 4.18
3105 3218 6.822170 GGATTCCTTTGGTCTATTTACGACTT 59.178 38.462 0.00 0.00 0.00 3.01
3106 3219 7.336176 GGATTCCTTTGGTCTATTTACGACTTT 59.664 37.037 0.00 0.00 0.00 2.66
3107 3220 7.429636 TTCCTTTGGTCTATTTACGACTTTG 57.570 36.000 0.00 0.00 0.00 2.77
3108 3221 5.410439 TCCTTTGGTCTATTTACGACTTTGC 59.590 40.000 0.00 0.00 0.00 3.68
3109 3222 5.180492 CCTTTGGTCTATTTACGACTTTGCA 59.820 40.000 0.00 0.00 0.00 4.08
3110 3223 5.856126 TTGGTCTATTTACGACTTTGCAG 57.144 39.130 0.00 0.00 0.00 4.41
3111 3224 4.890088 TGGTCTATTTACGACTTTGCAGT 58.110 39.130 0.00 0.00 35.17 4.40
3112 3225 4.927425 TGGTCTATTTACGACTTTGCAGTC 59.073 41.667 0.00 0.00 45.54 3.51
3113 3226 5.169295 GGTCTATTTACGACTTTGCAGTCT 58.831 41.667 4.76 0.00 46.67 3.24
3114 3227 6.071784 TGGTCTATTTACGACTTTGCAGTCTA 60.072 38.462 4.76 0.00 46.67 2.59
3115 3228 6.979238 GGTCTATTTACGACTTTGCAGTCTAT 59.021 38.462 4.76 0.00 46.67 1.98
3116 3229 7.491696 GGTCTATTTACGACTTTGCAGTCTATT 59.508 37.037 4.76 0.00 46.67 1.73
3117 3230 8.870879 GTCTATTTACGACTTTGCAGTCTATTT 58.129 33.333 4.76 0.00 46.67 1.40
3118 3231 9.431887 TCTATTTACGACTTTGCAGTCTATTTT 57.568 29.630 4.76 0.00 46.67 1.82
3121 3234 7.949903 TTACGACTTTGCAGTCTATTTTACA 57.050 32.000 4.76 0.00 46.67 2.41
3122 3235 8.542497 TTACGACTTTGCAGTCTATTTTACAT 57.458 30.769 4.76 0.00 46.67 2.29
3123 3236 9.642327 TTACGACTTTGCAGTCTATTTTACATA 57.358 29.630 4.76 0.00 46.67 2.29
3124 3237 8.718102 ACGACTTTGCAGTCTATTTTACATAT 57.282 30.769 4.76 0.00 46.67 1.78
3125 3238 9.162764 ACGACTTTGCAGTCTATTTTACATATT 57.837 29.630 4.76 0.00 46.67 1.28
3131 3244 8.520835 TGCAGTCTATTTTACATATTAGCTCG 57.479 34.615 0.00 0.00 0.00 5.03
3132 3245 7.598869 TGCAGTCTATTTTACATATTAGCTCGG 59.401 37.037 0.00 0.00 0.00 4.63
3133 3246 7.063544 GCAGTCTATTTTACATATTAGCTCGGG 59.936 40.741 0.00 0.00 0.00 5.14
3134 3247 7.063544 CAGTCTATTTTACATATTAGCTCGGGC 59.936 40.741 0.00 0.00 39.06 6.13
3146 3259 1.230324 GCTCGGGCTTAATCATGTCC 58.770 55.000 0.00 0.00 35.22 4.02
3147 3260 1.475034 GCTCGGGCTTAATCATGTCCA 60.475 52.381 0.00 0.00 35.22 4.02
3148 3261 2.917933 CTCGGGCTTAATCATGTCCAA 58.082 47.619 0.00 0.00 0.00 3.53
3149 3262 3.278574 CTCGGGCTTAATCATGTCCAAA 58.721 45.455 0.00 0.00 0.00 3.28
3150 3263 3.691575 TCGGGCTTAATCATGTCCAAAA 58.308 40.909 0.00 0.00 0.00 2.44
3151 3264 4.082845 TCGGGCTTAATCATGTCCAAAAA 58.917 39.130 0.00 0.00 0.00 1.94
3152 3265 4.709397 TCGGGCTTAATCATGTCCAAAAAT 59.291 37.500 0.00 0.00 0.00 1.82
3153 3266 5.888724 TCGGGCTTAATCATGTCCAAAAATA 59.111 36.000 0.00 0.00 0.00 1.40
3154 3267 6.549364 TCGGGCTTAATCATGTCCAAAAATAT 59.451 34.615 0.00 0.00 0.00 1.28
3155 3268 7.721842 TCGGGCTTAATCATGTCCAAAAATATA 59.278 33.333 0.00 0.00 0.00 0.86
3156 3269 7.807907 CGGGCTTAATCATGTCCAAAAATATAC 59.192 37.037 0.00 0.00 0.00 1.47
3157 3270 8.088365 GGGCTTAATCATGTCCAAAAATATACC 58.912 37.037 0.00 0.00 0.00 2.73
3158 3271 8.637986 GGCTTAATCATGTCCAAAAATATACCA 58.362 33.333 0.00 0.00 0.00 3.25
3162 3275 6.463995 TCATGTCCAAAAATATACCAAGGC 57.536 37.500 0.00 0.00 0.00 4.35
3163 3276 6.194235 TCATGTCCAAAAATATACCAAGGCT 58.806 36.000 0.00 0.00 0.00 4.58
3164 3277 7.350382 TCATGTCCAAAAATATACCAAGGCTA 58.650 34.615 0.00 0.00 0.00 3.93
3165 3278 7.502226 TCATGTCCAAAAATATACCAAGGCTAG 59.498 37.037 0.00 0.00 0.00 3.42
3166 3279 5.592688 TGTCCAAAAATATACCAAGGCTAGC 59.407 40.000 6.04 6.04 0.00 3.42
3167 3280 5.009710 GTCCAAAAATATACCAAGGCTAGCC 59.990 44.000 27.19 27.19 0.00 3.93
3177 3290 2.463441 AGGCTAGCCTTGAACCACA 58.537 52.632 31.30 0.00 45.70 4.17
3178 3291 0.771127 AGGCTAGCCTTGAACCACAA 59.229 50.000 31.30 0.00 45.70 3.33
3179 3292 0.881796 GGCTAGCCTTGAACCACAAC 59.118 55.000 27.17 0.00 34.56 3.32
3180 3293 0.881796 GCTAGCCTTGAACCACAACC 59.118 55.000 2.29 0.00 34.56 3.77
3181 3294 1.545651 GCTAGCCTTGAACCACAACCT 60.546 52.381 2.29 0.00 34.56 3.50
3182 3295 2.290071 GCTAGCCTTGAACCACAACCTA 60.290 50.000 2.29 0.00 34.56 3.08
3183 3296 3.809324 GCTAGCCTTGAACCACAACCTAA 60.809 47.826 2.29 0.00 34.56 2.69
3184 3297 3.306472 AGCCTTGAACCACAACCTAAA 57.694 42.857 0.00 0.00 34.56 1.85
3185 3298 2.956333 AGCCTTGAACCACAACCTAAAC 59.044 45.455 0.00 0.00 34.56 2.01
3186 3299 2.691011 GCCTTGAACCACAACCTAAACA 59.309 45.455 0.00 0.00 34.56 2.83
3187 3300 3.320826 GCCTTGAACCACAACCTAAACAT 59.679 43.478 0.00 0.00 34.56 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.515414 CAGACTATGAAACGGACATAGATATGA 58.485 37.037 22.67 0.00 45.59 2.15
40 41 7.649057 CACAGACTATGAAACGGACATAGATA 58.351 38.462 22.67 0.00 45.59 1.98
44 45 4.430007 GCACAGACTATGAAACGGACATA 58.570 43.478 0.00 0.00 0.00 2.29
50 51 3.179048 TCATCGCACAGACTATGAAACG 58.821 45.455 0.00 0.00 0.00 3.60
62 63 6.477360 ACATAAATTACGTACATCATCGCACA 59.523 34.615 0.00 0.00 0.00 4.57
63 64 6.873656 ACATAAATTACGTACATCATCGCAC 58.126 36.000 0.00 0.00 0.00 5.34
73 74 9.400235 CATACAACGTGAACATAAATTACGTAC 57.600 33.333 0.00 0.00 45.88 3.67
90 91 4.730949 AGCCATACTACACATACAACGT 57.269 40.909 0.00 0.00 0.00 3.99
91 92 7.027760 CCTATAGCCATACTACACATACAACG 58.972 42.308 0.00 0.00 32.32 4.10
96 97 8.562635 TGATACCCTATAGCCATACTACACATA 58.437 37.037 0.00 0.00 32.32 2.29
98 99 6.796648 TGATACCCTATAGCCATACTACACA 58.203 40.000 0.00 0.00 32.32 3.72
100 101 9.809395 GATATGATACCCTATAGCCATACTACA 57.191 37.037 0.00 0.00 32.32 2.74
107 108 6.162241 TCCTCAGATATGATACCCTATAGCCA 59.838 42.308 0.00 0.00 0.00 4.75
110 111 7.230510 GCACTCCTCAGATATGATACCCTATAG 59.769 44.444 0.00 0.00 0.00 1.31
117 118 7.705752 CACATATGCACTCCTCAGATATGATAC 59.294 40.741 1.58 0.00 33.21 2.24
144 145 3.191371 GGCACTCCTAAATTTGTGTCCTG 59.809 47.826 0.00 0.00 33.44 3.86
149 150 1.472480 CCGGGCACTCCTAAATTTGTG 59.528 52.381 0.00 1.47 0.00 3.33
191 192 1.790623 CCGAGTCAACAACCGTAACTG 59.209 52.381 0.00 0.00 0.00 3.16
281 282 1.978580 AGAGTCAGGGTCACCGAATTT 59.021 47.619 0.00 0.00 43.47 1.82
372 373 6.210984 CCCTACTTGAGAACTGGTACTACTTT 59.789 42.308 0.00 0.00 0.00 2.66
394 396 6.325545 TCACGTCCTATGATGTTATTAACCCT 59.674 38.462 4.17 0.00 38.70 4.34
399 401 9.268268 GGAAATTCACGTCCTATGATGTTATTA 57.732 33.333 0.00 0.00 38.70 0.98
424 426 3.679389 ACTGGTACTCAAAGAGCATTGG 58.321 45.455 0.00 0.00 32.04 3.16
459 461 3.636764 GGAGGTGGTGATTGTTTTTCACT 59.363 43.478 4.07 0.00 42.48 3.41
475 477 6.410942 TCTTACATACATCAGATGGAGGTG 57.589 41.667 21.15 8.71 38.77 4.00
569 583 8.296000 CGAGAAGAACAGATATACAGATCATGT 58.704 37.037 0.00 0.00 46.45 3.21
570 584 7.273164 GCGAGAAGAACAGATATACAGATCATG 59.727 40.741 0.00 0.00 0.00 3.07
572 586 6.488344 AGCGAGAAGAACAGATATACAGATCA 59.512 38.462 0.00 0.00 0.00 2.92
573 587 6.908825 AGCGAGAAGAACAGATATACAGATC 58.091 40.000 0.00 0.00 0.00 2.75
612 626 5.443230 ACTCCCTTTCCTCCAAAATAGAG 57.557 43.478 0.00 0.00 0.00 2.43
617 631 4.414182 TCAAGTACTCCCTTTCCTCCAAAA 59.586 41.667 0.00 0.00 0.00 2.44
650 664 4.260170 GGCATATGATTGAAGCCTAGAGG 58.740 47.826 6.97 0.00 42.01 3.69
742 756 2.238898 AGGCGGCAAGTATTTAAGGACT 59.761 45.455 13.08 0.00 0.00 3.85
857 876 5.046087 TGGAGACGATCGAGGGATAATAGTA 60.046 44.000 24.34 0.00 31.51 1.82
858 877 4.263374 TGGAGACGATCGAGGGATAATAGT 60.263 45.833 24.34 0.00 31.51 2.12
859 878 4.095185 GTGGAGACGATCGAGGGATAATAG 59.905 50.000 24.34 0.00 31.51 1.73
860 879 4.008330 GTGGAGACGATCGAGGGATAATA 58.992 47.826 24.34 0.00 31.51 0.98
861 880 2.820787 GTGGAGACGATCGAGGGATAAT 59.179 50.000 24.34 0.00 31.51 1.28
862 881 2.158652 AGTGGAGACGATCGAGGGATAA 60.159 50.000 24.34 0.00 31.51 1.75
863 882 1.420514 AGTGGAGACGATCGAGGGATA 59.579 52.381 24.34 0.19 31.51 2.59
864 883 0.183971 AGTGGAGACGATCGAGGGAT 59.816 55.000 24.34 0.00 34.96 3.85
909 949 3.572661 AACCCCCTTACCTTCTACTCA 57.427 47.619 0.00 0.00 0.00 3.41
949 989 3.885901 AGAGTCAGTTTCCTTGAAAAGCC 59.114 43.478 0.00 0.00 44.44 4.35
1040 1084 4.166011 GCTGCGCAACACGGATCC 62.166 66.667 13.05 0.00 43.07 3.36
1168 1212 1.600023 GTGGGTTTGATGTCGGTGAA 58.400 50.000 0.00 0.00 0.00 3.18
1177 1221 0.178975 TTGGCGAAGGTGGGTTTGAT 60.179 50.000 0.00 0.00 0.00 2.57
1182 1226 1.562672 ATAGCTTGGCGAAGGTGGGT 61.563 55.000 21.53 6.36 40.21 4.51
1608 1652 2.915659 AAGGTGTCCGCCTCGTGA 60.916 61.111 0.00 0.00 38.03 4.35
1609 1653 2.432628 GAAGGTGTCCGCCTCGTG 60.433 66.667 0.00 0.00 38.03 4.35
1880 1933 3.190849 CTACGCCTCCGACGACGA 61.191 66.667 9.28 0.00 42.66 4.20
2105 2164 1.153289 CCCCAGTCTTCATCAGCGG 60.153 63.158 0.00 0.00 0.00 5.52
2237 2318 8.428186 AAATATTAAAGGTTGCATTGCATGAG 57.572 30.769 12.95 0.00 38.76 2.90
2238 2319 7.495279 GGAAATATTAAAGGTTGCATTGCATGA 59.505 33.333 12.95 0.00 38.76 3.07
2307 2388 3.405831 CACTCTCACACCACATGTTCAT 58.594 45.455 0.00 0.00 40.64 2.57
2332 2416 6.761099 TTGTAGATCACTCTTACAGGACTC 57.239 41.667 0.00 0.00 32.66 3.36
2428 2512 8.098286 TGAATTTCAGAGCAAAAATGAATGGAT 58.902 29.630 0.00 0.00 33.26 3.41
2429 2513 7.443477 TGAATTTCAGAGCAAAAATGAATGGA 58.557 30.769 0.00 0.00 33.26 3.41
2476 2568 0.318120 CCAAAAAGCAAGCCCACGAT 59.682 50.000 0.00 0.00 0.00 3.73
2501 2593 4.680171 GTTGAAAACCGACCTGATAAGG 57.320 45.455 0.00 0.00 42.21 2.69
2514 2620 0.318699 GCTTCGGCCCAGTTGAAAAC 60.319 55.000 0.00 0.00 40.48 2.43
2540 2646 2.594592 AGGGCTTGACCGCACAAC 60.595 61.111 0.00 0.00 40.62 3.32
2548 2654 2.158971 GGAAGAGAGATGAGGGCTTGAC 60.159 54.545 0.00 0.00 0.00 3.18
2588 2694 7.712797 AGACGGAAACACATAAAAACAGAAAT 58.287 30.769 0.00 0.00 0.00 2.17
2595 2701 8.535690 AAAACAAAGACGGAAACACATAAAAA 57.464 26.923 0.00 0.00 0.00 1.94
2608 2714 7.201401 CCAACTAACAAAAGAAAACAAAGACGG 60.201 37.037 0.00 0.00 0.00 4.79
2645 2757 6.983474 ACACTCCAAAAATTTCCACAAAAG 57.017 33.333 0.00 0.00 0.00 2.27
2646 2758 6.150140 CCAACACTCCAAAAATTTCCACAAAA 59.850 34.615 0.00 0.00 0.00 2.44
2655 2768 4.030216 ACTCACCCAACACTCCAAAAATT 58.970 39.130 0.00 0.00 0.00 1.82
2663 2776 4.134563 ACATTTACACTCACCCAACACTC 58.865 43.478 0.00 0.00 0.00 3.51
2665 2778 6.183360 TGTTTACATTTACACTCACCCAACAC 60.183 38.462 0.00 0.00 0.00 3.32
2669 2782 5.437946 TGTGTTTACATTTACACTCACCCA 58.562 37.500 0.00 0.00 43.82 4.51
2670 2783 6.569179 ATGTGTTTACATTTACACTCACCC 57.431 37.500 0.00 0.00 45.01 4.61
2687 2800 8.576442 GCCCTTATTGCATAGTATTTATGTGTT 58.424 33.333 0.00 0.00 0.00 3.32
2688 2801 7.094805 CGCCCTTATTGCATAGTATTTATGTGT 60.095 37.037 0.00 0.00 0.00 3.72
2689 2802 7.119116 TCGCCCTTATTGCATAGTATTTATGTG 59.881 37.037 0.00 0.00 0.00 3.21
2690 2803 7.165485 TCGCCCTTATTGCATAGTATTTATGT 58.835 34.615 0.00 0.00 0.00 2.29
2691 2804 7.609760 TCGCCCTTATTGCATAGTATTTATG 57.390 36.000 0.00 0.00 0.00 1.90
2692 2805 9.899661 TTATCGCCCTTATTGCATAGTATTTAT 57.100 29.630 0.00 0.00 0.00 1.40
2693 2806 9.899661 ATTATCGCCCTTATTGCATAGTATTTA 57.100 29.630 0.00 0.00 0.00 1.40
2694 2807 8.807948 ATTATCGCCCTTATTGCATAGTATTT 57.192 30.769 0.00 0.00 0.00 1.40
2695 2808 8.807948 AATTATCGCCCTTATTGCATAGTATT 57.192 30.769 0.00 0.00 0.00 1.89
2696 2809 9.326413 GTAATTATCGCCCTTATTGCATAGTAT 57.674 33.333 0.00 0.00 0.00 2.12
2697 2810 8.315482 TGTAATTATCGCCCTTATTGCATAGTA 58.685 33.333 0.00 0.00 0.00 1.82
2698 2811 7.165485 TGTAATTATCGCCCTTATTGCATAGT 58.835 34.615 0.00 0.00 0.00 2.12
2699 2812 7.609760 TGTAATTATCGCCCTTATTGCATAG 57.390 36.000 0.00 0.00 0.00 2.23
2700 2813 8.574251 AATGTAATTATCGCCCTTATTGCATA 57.426 30.769 0.00 0.00 33.93 3.14
2701 2814 7.466746 AATGTAATTATCGCCCTTATTGCAT 57.533 32.000 0.00 0.00 35.68 3.96
2702 2815 6.892658 AATGTAATTATCGCCCTTATTGCA 57.107 33.333 0.00 0.00 32.46 4.08
2732 2845 9.853555 CATTGGTATTGCTGTTAAAAATAGTCA 57.146 29.630 0.00 0.00 0.00 3.41
2733 2846 8.807581 GCATTGGTATTGCTGTTAAAAATAGTC 58.192 33.333 0.00 0.00 37.14 2.59
2734 2847 7.763985 GGCATTGGTATTGCTGTTAAAAATAGT 59.236 33.333 0.00 0.00 40.03 2.12
2735 2848 7.763528 TGGCATTGGTATTGCTGTTAAAAATAG 59.236 33.333 0.00 0.00 40.03 1.73
2736 2849 7.547370 GTGGCATTGGTATTGCTGTTAAAAATA 59.453 33.333 0.00 0.00 40.03 1.40
2737 2850 6.371271 GTGGCATTGGTATTGCTGTTAAAAAT 59.629 34.615 0.00 0.00 40.03 1.82
2738 2851 5.698545 GTGGCATTGGTATTGCTGTTAAAAA 59.301 36.000 0.00 0.00 40.03 1.94
2739 2852 5.011533 AGTGGCATTGGTATTGCTGTTAAAA 59.988 36.000 0.00 0.00 40.03 1.52
2740 2853 4.526262 AGTGGCATTGGTATTGCTGTTAAA 59.474 37.500 0.00 0.00 40.03 1.52
2741 2854 4.085733 AGTGGCATTGGTATTGCTGTTAA 58.914 39.130 0.00 0.00 40.03 2.01
2742 2855 3.696045 AGTGGCATTGGTATTGCTGTTA 58.304 40.909 0.00 0.00 40.03 2.41
2743 2856 2.528564 AGTGGCATTGGTATTGCTGTT 58.471 42.857 0.00 0.00 40.03 3.16
2744 2857 2.220653 AGTGGCATTGGTATTGCTGT 57.779 45.000 0.00 0.00 40.03 4.40
2745 2858 4.924305 AATAGTGGCATTGGTATTGCTG 57.076 40.909 0.00 0.00 40.03 4.41
2746 2859 5.940617 TCTAATAGTGGCATTGGTATTGCT 58.059 37.500 0.00 0.00 40.03 3.91
2747 2860 6.824305 ATCTAATAGTGGCATTGGTATTGC 57.176 37.500 0.00 0.00 39.41 3.56
2781 2894 9.383519 CGCCCATATTCACTATTAGATGTTTAT 57.616 33.333 0.00 0.00 0.00 1.40
2782 2895 8.590204 TCGCCCATATTCACTATTAGATGTTTA 58.410 33.333 0.00 0.00 0.00 2.01
2783 2896 7.450074 TCGCCCATATTCACTATTAGATGTTT 58.550 34.615 0.00 0.00 0.00 2.83
2784 2897 7.004555 TCGCCCATATTCACTATTAGATGTT 57.995 36.000 0.00 0.00 0.00 2.71
2785 2898 6.605471 TCGCCCATATTCACTATTAGATGT 57.395 37.500 0.00 0.00 0.00 3.06
2786 2899 9.770097 ATTATCGCCCATATTCACTATTAGATG 57.230 33.333 0.00 0.00 0.00 2.90
2791 2904 9.905713 ATGTAATTATCGCCCATATTCACTATT 57.094 29.630 0.00 0.00 0.00 1.73
2794 2907 9.733556 TTTATGTAATTATCGCCCATATTCACT 57.266 29.630 0.00 0.00 0.00 3.41
2799 2912 9.528489 AGGTTTTTATGTAATTATCGCCCATAT 57.472 29.630 0.00 0.00 0.00 1.78
2800 2913 8.927675 AGGTTTTTATGTAATTATCGCCCATA 57.072 30.769 0.00 0.00 0.00 2.74
2801 2914 7.833285 AGGTTTTTATGTAATTATCGCCCAT 57.167 32.000 0.00 0.00 0.00 4.00
2802 2915 8.749026 TTAGGTTTTTATGTAATTATCGCCCA 57.251 30.769 0.00 0.00 0.00 5.36
2803 2916 9.620660 CATTAGGTTTTTATGTAATTATCGCCC 57.379 33.333 0.00 0.00 0.00 6.13
2891 3004 9.663904 GCGCTTTGTTATAATGAATATTCAAGA 57.336 29.630 21.50 12.76 41.13 3.02
2892 3005 9.449550 TGCGCTTTGTTATAATGAATATTCAAG 57.550 29.630 21.50 11.91 41.13 3.02
2893 3006 9.794685 TTGCGCTTTGTTATAATGAATATTCAA 57.205 25.926 21.50 7.25 41.13 2.69
2894 3007 9.964303 ATTGCGCTTTGTTATAATGAATATTCA 57.036 25.926 20.07 20.07 42.14 2.57
2899 3012 8.810427 CAAGAATTGCGCTTTGTTATAATGAAT 58.190 29.630 9.73 0.00 40.39 2.57
2900 3013 8.172159 CAAGAATTGCGCTTTGTTATAATGAA 57.828 30.769 9.73 0.00 40.39 2.57
2901 3014 7.739022 CAAGAATTGCGCTTTGTTATAATGA 57.261 32.000 9.73 0.00 40.39 2.57
2916 3029 8.907609 ATTGCACCCAAATTACACAAGAATTGC 61.908 37.037 0.00 0.00 41.64 3.56
2917 3030 6.427547 ATTGCACCCAAATTACACAAGAATTG 59.572 34.615 0.00 0.00 42.82 2.32
2918 3031 5.543507 TGCACCCAAATTACACAAGAATT 57.456 34.783 0.00 0.00 0.00 2.17
2919 3032 5.543507 TTGCACCCAAATTACACAAGAAT 57.456 34.783 0.00 0.00 0.00 2.40
2920 3033 5.543507 ATTGCACCCAAATTACACAAGAA 57.456 34.783 0.00 0.00 34.05 2.52
2921 3034 5.543507 AATTGCACCCAAATTACACAAGA 57.456 34.783 0.00 0.00 34.05 3.02
2922 3035 6.616774 AAAATTGCACCCAAATTACACAAG 57.383 33.333 0.00 0.00 34.05 3.16
2989 3102 9.528018 GAACCATTGAAACAAAGTGAAAGATAA 57.472 29.630 0.00 0.00 0.00 1.75
2990 3103 8.912988 AGAACCATTGAAACAAAGTGAAAGATA 58.087 29.630 0.00 0.00 0.00 1.98
2991 3104 7.785033 AGAACCATTGAAACAAAGTGAAAGAT 58.215 30.769 0.00 0.00 0.00 2.40
2992 3105 7.169158 AGAACCATTGAAACAAAGTGAAAGA 57.831 32.000 0.00 0.00 0.00 2.52
2993 3106 7.649306 CCTAGAACCATTGAAACAAAGTGAAAG 59.351 37.037 0.00 0.00 0.00 2.62
2994 3107 7.417342 CCCTAGAACCATTGAAACAAAGTGAAA 60.417 37.037 0.00 0.00 0.00 2.69
2995 3108 6.040391 CCCTAGAACCATTGAAACAAAGTGAA 59.960 38.462 0.00 0.00 0.00 3.18
2996 3109 5.534654 CCCTAGAACCATTGAAACAAAGTGA 59.465 40.000 0.00 0.00 0.00 3.41
2997 3110 5.278957 CCCCTAGAACCATTGAAACAAAGTG 60.279 44.000 0.00 0.00 0.00 3.16
2998 3111 4.832823 CCCCTAGAACCATTGAAACAAAGT 59.167 41.667 0.00 0.00 0.00 2.66
2999 3112 5.076873 TCCCCTAGAACCATTGAAACAAAG 58.923 41.667 0.00 0.00 0.00 2.77
3000 3113 5.068215 TCCCCTAGAACCATTGAAACAAA 57.932 39.130 0.00 0.00 0.00 2.83
3001 3114 4.733077 TCCCCTAGAACCATTGAAACAA 57.267 40.909 0.00 0.00 0.00 2.83
3002 3115 4.733077 TTCCCCTAGAACCATTGAAACA 57.267 40.909 0.00 0.00 0.00 2.83
3013 3126 1.281419 TCATTGGCGTTCCCCTAGAA 58.719 50.000 0.00 0.00 0.00 2.10
3014 3127 1.416401 GATCATTGGCGTTCCCCTAGA 59.584 52.381 0.00 0.00 0.00 2.43
3015 3128 1.417890 AGATCATTGGCGTTCCCCTAG 59.582 52.381 0.00 0.00 0.00 3.02
3016 3129 1.507140 AGATCATTGGCGTTCCCCTA 58.493 50.000 0.00 0.00 0.00 3.53
3017 3130 0.625849 AAGATCATTGGCGTTCCCCT 59.374 50.000 0.00 0.00 0.00 4.79
3018 3131 0.740737 CAAGATCATTGGCGTTCCCC 59.259 55.000 0.00 0.00 0.00 4.81
3019 3132 1.401905 GTCAAGATCATTGGCGTTCCC 59.598 52.381 0.00 0.00 0.00 3.97
3020 3133 2.359900 AGTCAAGATCATTGGCGTTCC 58.640 47.619 0.00 0.00 0.00 3.62
3021 3134 5.545658 TTAAGTCAAGATCATTGGCGTTC 57.454 39.130 0.00 0.00 0.00 3.95
3022 3135 5.957842 TTTAAGTCAAGATCATTGGCGTT 57.042 34.783 0.00 0.00 0.00 4.84
3023 3136 5.957842 TTTTAAGTCAAGATCATTGGCGT 57.042 34.783 0.00 0.00 0.00 5.68
3024 3137 7.816945 AAATTTTAAGTCAAGATCATTGGCG 57.183 32.000 0.00 0.00 0.00 5.69
3025 3138 9.206870 TCAAAATTTTAAGTCAAGATCATTGGC 57.793 29.630 2.44 0.00 0.00 4.52
3050 3163 9.994432 CCGCTATTTCCTAATCATGAATAATTC 57.006 33.333 0.00 0.00 0.00 2.17
3051 3164 9.739276 TCCGCTATTTCCTAATCATGAATAATT 57.261 29.630 0.00 0.00 0.00 1.40
3052 3165 9.167311 GTCCGCTATTTCCTAATCATGAATAAT 57.833 33.333 0.00 0.00 0.00 1.28
3053 3166 7.330946 CGTCCGCTATTTCCTAATCATGAATAA 59.669 37.037 0.00 0.00 0.00 1.40
3054 3167 6.811665 CGTCCGCTATTTCCTAATCATGAATA 59.188 38.462 0.00 0.00 0.00 1.75
3055 3168 5.639506 CGTCCGCTATTTCCTAATCATGAAT 59.360 40.000 0.00 0.00 0.00 2.57
3056 3169 4.988540 CGTCCGCTATTTCCTAATCATGAA 59.011 41.667 0.00 0.00 0.00 2.57
3057 3170 4.556233 CGTCCGCTATTTCCTAATCATGA 58.444 43.478 0.00 0.00 0.00 3.07
3058 3171 3.679980 CCGTCCGCTATTTCCTAATCATG 59.320 47.826 0.00 0.00 0.00 3.07
3059 3172 3.306780 CCCGTCCGCTATTTCCTAATCAT 60.307 47.826 0.00 0.00 0.00 2.45
3060 3173 2.036733 CCCGTCCGCTATTTCCTAATCA 59.963 50.000 0.00 0.00 0.00 2.57
3061 3174 2.298163 TCCCGTCCGCTATTTCCTAATC 59.702 50.000 0.00 0.00 0.00 1.75
3062 3175 2.322658 TCCCGTCCGCTATTTCCTAAT 58.677 47.619 0.00 0.00 0.00 1.73
3063 3176 1.779221 TCCCGTCCGCTATTTCCTAA 58.221 50.000 0.00 0.00 0.00 2.69
3064 3177 2.005370 ATCCCGTCCGCTATTTCCTA 57.995 50.000 0.00 0.00 0.00 2.94
3065 3178 1.070289 GAATCCCGTCCGCTATTTCCT 59.930 52.381 0.00 0.00 0.00 3.36
3066 3179 1.509703 GAATCCCGTCCGCTATTTCC 58.490 55.000 0.00 0.00 0.00 3.13
3067 3180 1.070289 AGGAATCCCGTCCGCTATTTC 59.930 52.381 0.00 0.00 43.03 2.17
3068 3181 1.129058 AGGAATCCCGTCCGCTATTT 58.871 50.000 0.00 0.00 43.03 1.40
3069 3182 1.129058 AAGGAATCCCGTCCGCTATT 58.871 50.000 0.00 0.00 43.03 1.73
3070 3183 1.129058 AAAGGAATCCCGTCCGCTAT 58.871 50.000 0.00 0.00 43.03 2.97
3071 3184 0.177141 CAAAGGAATCCCGTCCGCTA 59.823 55.000 0.00 0.00 43.03 4.26
3072 3185 1.078426 CAAAGGAATCCCGTCCGCT 60.078 57.895 0.00 0.00 43.03 5.52
3073 3186 2.112815 CCAAAGGAATCCCGTCCGC 61.113 63.158 0.00 0.00 43.03 5.54
3074 3187 0.743345 GACCAAAGGAATCCCGTCCG 60.743 60.000 0.00 0.00 43.03 4.79
3075 3188 0.618981 AGACCAAAGGAATCCCGTCC 59.381 55.000 0.00 0.00 38.03 4.79
3076 3189 3.840124 ATAGACCAAAGGAATCCCGTC 57.160 47.619 0.00 0.00 37.58 4.79
3077 3190 4.586306 AAATAGACCAAAGGAATCCCGT 57.414 40.909 0.00 0.00 37.58 5.28
3078 3191 4.510340 CGTAAATAGACCAAAGGAATCCCG 59.490 45.833 0.00 0.00 37.58 5.14
3079 3192 5.526479 GTCGTAAATAGACCAAAGGAATCCC 59.474 44.000 0.00 0.00 32.78 3.85
3080 3193 6.346896 AGTCGTAAATAGACCAAAGGAATCC 58.653 40.000 0.00 0.00 39.31 3.01
3081 3194 7.845066 AAGTCGTAAATAGACCAAAGGAATC 57.155 36.000 0.00 0.00 39.31 2.52
3082 3195 7.361799 GCAAAGTCGTAAATAGACCAAAGGAAT 60.362 37.037 0.00 0.00 39.31 3.01
3083 3196 6.072893 GCAAAGTCGTAAATAGACCAAAGGAA 60.073 38.462 0.00 0.00 39.31 3.36
3084 3197 5.410439 GCAAAGTCGTAAATAGACCAAAGGA 59.590 40.000 0.00 0.00 39.31 3.36
3085 3198 5.180492 TGCAAAGTCGTAAATAGACCAAAGG 59.820 40.000 0.00 0.00 39.31 3.11
3086 3199 6.073222 ACTGCAAAGTCGTAAATAGACCAAAG 60.073 38.462 0.00 0.00 39.31 2.77
3087 3200 5.761234 ACTGCAAAGTCGTAAATAGACCAAA 59.239 36.000 0.00 0.00 39.31 3.28
3088 3201 5.302360 ACTGCAAAGTCGTAAATAGACCAA 58.698 37.500 0.00 0.00 39.31 3.67
3089 3202 4.890088 ACTGCAAAGTCGTAAATAGACCA 58.110 39.130 0.00 0.00 39.31 4.02
3090 3203 5.169295 AGACTGCAAAGTCGTAAATAGACC 58.831 41.667 0.85 0.00 43.15 3.85
3091 3204 7.988904 ATAGACTGCAAAGTCGTAAATAGAC 57.011 36.000 0.85 0.00 43.15 2.59
3092 3205 8.997621 AAATAGACTGCAAAGTCGTAAATAGA 57.002 30.769 0.85 0.00 43.15 1.98
3095 3208 8.995220 TGTAAAATAGACTGCAAAGTCGTAAAT 58.005 29.630 0.85 0.00 43.15 1.40
3096 3209 8.367943 TGTAAAATAGACTGCAAAGTCGTAAA 57.632 30.769 0.85 0.00 43.15 2.01
3097 3210 7.949903 TGTAAAATAGACTGCAAAGTCGTAA 57.050 32.000 0.85 0.00 43.15 3.18
3098 3211 9.811995 ATATGTAAAATAGACTGCAAAGTCGTA 57.188 29.630 0.85 0.00 43.15 3.43
3099 3212 8.718102 ATATGTAAAATAGACTGCAAAGTCGT 57.282 30.769 0.85 0.00 43.15 4.34
3105 3218 8.978539 CGAGCTAATATGTAAAATAGACTGCAA 58.021 33.333 0.00 0.00 0.00 4.08
3106 3219 7.598869 CCGAGCTAATATGTAAAATAGACTGCA 59.401 37.037 0.00 0.00 0.00 4.41
3107 3220 7.063544 CCCGAGCTAATATGTAAAATAGACTGC 59.936 40.741 0.00 0.00 0.00 4.40
3108 3221 7.063544 GCCCGAGCTAATATGTAAAATAGACTG 59.936 40.741 0.00 0.00 35.50 3.51
3109 3222 7.097834 GCCCGAGCTAATATGTAAAATAGACT 58.902 38.462 0.00 0.00 35.50 3.24
3110 3223 7.292129 GCCCGAGCTAATATGTAAAATAGAC 57.708 40.000 0.00 0.00 35.50 2.59
3127 3240 1.230324 GGACATGATTAAGCCCGAGC 58.770 55.000 0.00 0.00 40.32 5.03
3128 3241 2.620251 TGGACATGATTAAGCCCGAG 57.380 50.000 0.00 0.00 0.00 4.63
3129 3242 3.358111 TTTGGACATGATTAAGCCCGA 57.642 42.857 0.00 0.00 0.00 5.14
3130 3243 4.448537 TTTTTGGACATGATTAAGCCCG 57.551 40.909 0.00 0.00 0.00 6.13
3131 3244 8.088365 GGTATATTTTTGGACATGATTAAGCCC 58.912 37.037 0.00 0.00 0.00 5.19
3132 3245 8.637986 TGGTATATTTTTGGACATGATTAAGCC 58.362 33.333 0.00 0.00 0.00 4.35
3136 3249 8.637986 GCCTTGGTATATTTTTGGACATGATTA 58.362 33.333 0.00 0.00 0.00 1.75
3137 3250 7.345392 AGCCTTGGTATATTTTTGGACATGATT 59.655 33.333 0.00 0.00 0.00 2.57
3138 3251 6.840705 AGCCTTGGTATATTTTTGGACATGAT 59.159 34.615 0.00 0.00 0.00 2.45
3139 3252 6.194235 AGCCTTGGTATATTTTTGGACATGA 58.806 36.000 0.00 0.00 0.00 3.07
3140 3253 6.469782 AGCCTTGGTATATTTTTGGACATG 57.530 37.500 0.00 0.00 0.00 3.21
3141 3254 6.265422 GCTAGCCTTGGTATATTTTTGGACAT 59.735 38.462 2.29 0.00 0.00 3.06
3142 3255 5.592688 GCTAGCCTTGGTATATTTTTGGACA 59.407 40.000 2.29 0.00 0.00 4.02
3143 3256 5.009710 GGCTAGCCTTGGTATATTTTTGGAC 59.990 44.000 27.17 0.00 0.00 4.02
3144 3257 5.103686 AGGCTAGCCTTGGTATATTTTTGGA 60.104 40.000 31.30 0.00 45.70 3.53
3145 3258 5.140454 AGGCTAGCCTTGGTATATTTTTGG 58.860 41.667 31.30 0.00 45.70 3.28
3160 3273 0.881796 GTTGTGGTTCAAGGCTAGCC 59.118 55.000 27.19 27.19 36.66 3.93
3161 3274 0.881796 GGTTGTGGTTCAAGGCTAGC 59.118 55.000 6.04 6.04 36.66 3.42
3162 3275 2.568623 AGGTTGTGGTTCAAGGCTAG 57.431 50.000 0.00 0.00 36.66 3.42
3163 3276 4.139038 GTTTAGGTTGTGGTTCAAGGCTA 58.861 43.478 0.00 0.00 36.66 3.93
3164 3277 2.956333 GTTTAGGTTGTGGTTCAAGGCT 59.044 45.455 0.00 0.00 36.66 4.58
3165 3278 2.691011 TGTTTAGGTTGTGGTTCAAGGC 59.309 45.455 0.00 0.00 36.66 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.