Multiple sequence alignment - TraesCS7D01G046200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G046200 chr7D 100.000 4022 0 0 1 4022 23526666 23522645 0.000000e+00 7428.0
1 TraesCS7D01G046200 chr7D 78.963 984 185 17 1728 2696 22945007 22945983 0.000000e+00 651.0
2 TraesCS7D01G046200 chr7D 78.600 986 185 21 1728 2696 22973802 22972826 2.640000e-176 628.0
3 TraesCS7D01G046200 chr7D 79.238 814 153 13 781 1587 22974772 22973968 1.630000e-153 553.0
4 TraesCS7D01G046200 chr7D 92.893 197 13 1 281 476 499739597 499739401 6.580000e-73 285.0
5 TraesCS7D01G046200 chr7D 93.956 182 11 0 289 470 17234601 17234420 3.960000e-70 276.0
6 TraesCS7D01G046200 chr4A 91.077 3149 199 42 471 3561 708241142 708244266 0.000000e+00 4183.0
7 TraesCS7D01G046200 chr4A 78.296 986 188 18 1728 2696 706837695 706836719 2.660000e-171 612.0
8 TraesCS7D01G046200 chr4A 75.947 528 106 18 3372 3886 152742352 152742871 6.670000e-63 252.0
9 TraesCS7D01G046200 chr4A 96.694 121 3 1 169 289 708241030 708241149 2.450000e-47 200.0
10 TraesCS7D01G046200 chr4A 72.201 536 117 24 2162 2688 612058442 612058954 7.010000e-28 135.0
11 TraesCS7D01G046200 chr4A 86.047 86 11 1 1506 1590 704301304 704301219 1.540000e-14 91.6
12 TraesCS7D01G046200 chr7A 88.776 2156 205 18 842 2992 24510088 24512211 0.000000e+00 2606.0
13 TraesCS7D01G046200 chr7A 88.729 2156 206 18 842 2992 24492353 24494476 0.000000e+00 2601.0
14 TraesCS7D01G046200 chr7A 90.725 1725 114 24 1676 3386 24637190 24635498 0.000000e+00 2257.0
15 TraesCS7D01G046200 chr7A 93.001 1243 61 17 471 1696 24638438 24637205 0.000000e+00 1790.0
16 TraesCS7D01G046200 chr7A 84.032 1860 238 37 605 2421 24506021 24507864 0.000000e+00 1735.0
17 TraesCS7D01G046200 chr7A 84.279 916 130 9 1512 2421 24489222 24490129 0.000000e+00 881.0
18 TraesCS7D01G046200 chr7A 79.627 805 138 16 781 1572 23354775 23355566 4.540000e-154 555.0
19 TraesCS7D01G046200 chr7A 75.797 533 108 19 3367 3886 694115410 694114886 2.400000e-62 250.0
20 TraesCS7D01G046200 chr7A 75.665 489 96 22 3355 3831 103018869 103019346 5.230000e-54 222.0
21 TraesCS7D01G046200 chr7A 83.590 195 32 0 2800 2994 24508388 24508582 2.470000e-42 183.0
22 TraesCS7D01G046200 chr7A 83.077 195 33 0 2800 2994 24490653 24490847 1.150000e-40 178.0
23 TraesCS7D01G046200 chr7A 96.000 50 1 1 240 289 24638479 24638431 3.330000e-11 80.5
24 TraesCS7D01G046200 chr5A 80.402 796 142 12 781 1572 41953864 41954649 9.620000e-166 593.0
25 TraesCS7D01G046200 chr5A 79.198 798 150 15 781 1572 41966852 41967639 1.270000e-149 540.0
26 TraesCS7D01G046200 chr5A 93.296 179 12 0 292 470 46367566 46367388 8.570000e-67 265.0
27 TraesCS7D01G046200 chr5A 76.173 533 101 21 3372 3886 619857101 619856577 1.430000e-64 257.0
28 TraesCS7D01G046200 chr5B 74.052 1002 227 31 1720 2702 79814018 79813031 2.930000e-101 379.0
29 TraesCS7D01G046200 chr5D 73.716 993 226 31 1724 2696 72911140 72910163 4.940000e-94 355.0
30 TraesCS7D01G046200 chr5D 92.857 182 13 0 288 469 401323327 401323146 8.570000e-67 265.0
31 TraesCS7D01G046200 chr6D 92.513 187 14 0 287 473 7488545 7488359 6.630000e-68 268.0
32 TraesCS7D01G046200 chrUn 93.370 181 11 1 289 469 262705398 262705577 2.380000e-67 267.0
33 TraesCS7D01G046200 chrUn 86.047 86 11 1 1506 1590 313746235 313746150 1.540000e-14 91.6
34 TraesCS7D01G046200 chr2B 92.857 182 13 0 289 470 795598485 795598304 8.570000e-67 265.0
35 TraesCS7D01G046200 chr2B 73.491 464 104 17 3372 3826 120536550 120536097 1.500000e-34 158.0
36 TraesCS7D01G046200 chr3D 92.857 182 12 1 289 470 98370662 98370842 3.080000e-66 263.0
37 TraesCS7D01G046200 chr3D 81.818 88 13 3 3719 3804 281357172 281357086 2.010000e-08 71.3
38 TraesCS7D01G046200 chr3B 92.818 181 13 0 289 469 226083172 226082992 3.080000e-66 263.0
39 TraesCS7D01G046200 chr2D 76.327 490 94 19 3407 3886 162495536 162495059 4.020000e-60 243.0
40 TraesCS7D01G046200 chr2D 75.052 481 92 16 3332 3804 513037543 513038003 8.820000e-47 198.0
41 TraesCS7D01G046200 chr2A 75.884 481 87 24 3369 3831 350359326 350358857 6.770000e-53 219.0
42 TraesCS7D01G046200 chr1D 74.672 458 100 15 3376 3826 479199513 479199961 5.310000e-44 189.0
43 TraesCS7D01G046200 chr3A 71.908 566 126 23 2150 2707 100353804 100354344 2.520000e-27 134.0
44 TraesCS7D01G046200 chr4D 82.353 85 8 7 3724 3805 423890513 423890593 2.590000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G046200 chr7D 23522645 23526666 4021 True 7428.000000 7428 100.000000 1 4022 1 chr7D.!!$R2 4021
1 TraesCS7D01G046200 chr7D 22945007 22945983 976 False 651.000000 651 78.963000 1728 2696 1 chr7D.!!$F1 968
2 TraesCS7D01G046200 chr7D 22972826 22974772 1946 True 590.500000 628 78.919000 781 2696 2 chr7D.!!$R4 1915
3 TraesCS7D01G046200 chr4A 708241030 708244266 3236 False 2191.500000 4183 93.885500 169 3561 2 chr4A.!!$F3 3392
4 TraesCS7D01G046200 chr4A 706836719 706837695 976 True 612.000000 612 78.296000 1728 2696 1 chr4A.!!$R2 968
5 TraesCS7D01G046200 chr4A 152742352 152742871 519 False 252.000000 252 75.947000 3372 3886 1 chr4A.!!$F1 514
6 TraesCS7D01G046200 chr7A 24506021 24512211 6190 False 1508.000000 2606 85.466000 605 2994 3 chr7A.!!$F4 2389
7 TraesCS7D01G046200 chr7A 24635498 24638479 2981 True 1375.833333 2257 93.242000 240 3386 3 chr7A.!!$R2 3146
8 TraesCS7D01G046200 chr7A 24489222 24494476 5254 False 1220.000000 2601 85.361667 842 2994 3 chr7A.!!$F3 2152
9 TraesCS7D01G046200 chr7A 23354775 23355566 791 False 555.000000 555 79.627000 781 1572 1 chr7A.!!$F1 791
10 TraesCS7D01G046200 chr7A 694114886 694115410 524 True 250.000000 250 75.797000 3367 3886 1 chr7A.!!$R1 519
11 TraesCS7D01G046200 chr5A 41953864 41954649 785 False 593.000000 593 80.402000 781 1572 1 chr5A.!!$F1 791
12 TraesCS7D01G046200 chr5A 41966852 41967639 787 False 540.000000 540 79.198000 781 1572 1 chr5A.!!$F2 791
13 TraesCS7D01G046200 chr5A 619856577 619857101 524 True 257.000000 257 76.173000 3372 3886 1 chr5A.!!$R2 514
14 TraesCS7D01G046200 chr5B 79813031 79814018 987 True 379.000000 379 74.052000 1720 2702 1 chr5B.!!$R1 982
15 TraesCS7D01G046200 chr5D 72910163 72911140 977 True 355.000000 355 73.716000 1724 2696 1 chr5D.!!$R1 972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.173708 AGGACTTTAGGAGAAGCGCG 59.826 55.0 0.0 0.0 0.00 6.86 F
150 151 0.243365 ACTGCAAGAGACAGAGAGCG 59.757 55.0 0.0 0.0 38.55 5.03 F
1075 7176 0.677731 CAAGCAGGCCGAGGATGAAA 60.678 55.0 0.0 0.0 0.00 2.69 F
1623 7765 0.838987 GGGGAGGTACTGGTTGGTCA 60.839 60.0 0.0 0.0 41.55 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 7765 0.326264 GACCTCTGTGACATGGCCTT 59.674 55.0 3.32 0.0 0.0 4.35 R
1812 8019 0.798776 GACCAACAACTCGCTCATGG 59.201 55.0 0.00 0.0 0.0 3.66 R
1950 8157 2.095008 GGCAAGAGCTTTAGCAAGTTCC 60.095 50.0 4.33 0.0 40.3 3.62 R
3251 9520 0.372334 CACGCATACAAGTTACCGCC 59.628 55.0 0.00 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.554692 GAGCATCGCCGTCGGTTG 61.555 66.667 13.94 9.62 36.13 3.77
42 43 4.383602 CCGTCGGTTGCGGCAAAG 62.384 66.667 18.23 14.39 42.82 2.77
60 61 2.510238 CGCTGAGCTTTCCCTCGG 60.510 66.667 1.78 0.00 40.45 4.63
62 63 2.665000 CTGAGCTTTCCCTCGGCA 59.335 61.111 0.00 0.00 34.56 5.69
63 64 1.222936 CTGAGCTTTCCCTCGGCAT 59.777 57.895 0.00 0.00 34.56 4.40
64 65 1.078214 TGAGCTTTCCCTCGGCATG 60.078 57.895 0.00 0.00 34.56 4.06
66 67 3.521796 GCTTTCCCTCGGCATGCC 61.522 66.667 27.67 27.67 0.00 4.40
67 68 2.273449 CTTTCCCTCGGCATGCCT 59.727 61.111 33.07 0.00 0.00 4.75
69 70 2.262774 CTTTCCCTCGGCATGCCTCT 62.263 60.000 33.07 0.00 0.00 3.69
70 71 2.257409 TTTCCCTCGGCATGCCTCTC 62.257 60.000 33.07 8.43 0.00 3.20
72 73 2.815945 CCCTCGGCATGCCTCTCAT 61.816 63.158 33.07 0.00 35.31 2.90
78 79 3.433319 CATGCCTCTCATGCCAGC 58.567 61.111 0.00 0.00 45.20 4.85
80 81 0.823769 CATGCCTCTCATGCCAGCAT 60.824 55.000 0.00 0.00 45.20 3.79
89 90 3.994165 ATGCCAGCATGAGGACTTT 57.006 47.368 3.90 0.00 39.69 2.66
91 92 2.408271 TGCCAGCATGAGGACTTTAG 57.592 50.000 8.66 0.00 39.69 1.85
93 94 1.210478 GCCAGCATGAGGACTTTAGGA 59.790 52.381 8.66 0.00 39.69 2.94
95 96 2.768527 CCAGCATGAGGACTTTAGGAGA 59.231 50.000 0.00 0.00 39.69 3.71
96 97 3.198635 CCAGCATGAGGACTTTAGGAGAA 59.801 47.826 0.00 0.00 39.69 2.87
97 98 4.440880 CAGCATGAGGACTTTAGGAGAAG 58.559 47.826 0.00 0.00 39.69 2.85
98 99 3.118445 AGCATGAGGACTTTAGGAGAAGC 60.118 47.826 0.00 0.00 0.00 3.86
99 100 3.452474 CATGAGGACTTTAGGAGAAGCG 58.548 50.000 0.00 0.00 0.00 4.68
100 101 1.204941 TGAGGACTTTAGGAGAAGCGC 59.795 52.381 0.00 0.00 0.00 5.92
101 102 0.173708 AGGACTTTAGGAGAAGCGCG 59.826 55.000 0.00 0.00 0.00 6.86
103 104 1.422179 GACTTTAGGAGAAGCGCGGC 61.422 60.000 8.83 0.00 0.00 6.53
104 105 1.447838 CTTTAGGAGAAGCGCGGCA 60.448 57.895 8.83 0.00 0.00 5.69
105 106 1.004320 TTTAGGAGAAGCGCGGCAA 60.004 52.632 8.83 0.00 0.00 4.52
106 107 1.019278 TTTAGGAGAAGCGCGGCAAG 61.019 55.000 8.83 0.00 0.00 4.01
108 109 2.167398 TAGGAGAAGCGCGGCAAGTT 62.167 55.000 8.83 0.00 0.00 2.66
109 110 2.476499 GAGAAGCGCGGCAAGTTC 59.524 61.111 8.83 0.00 0.00 3.01
110 111 2.280797 AGAAGCGCGGCAAGTTCA 60.281 55.556 8.83 0.00 0.00 3.18
111 112 2.174349 GAAGCGCGGCAAGTTCAG 59.826 61.111 8.83 0.00 0.00 3.02
112 113 2.280797 AAGCGCGGCAAGTTCAGA 60.281 55.556 8.83 0.00 0.00 3.27
113 114 1.639298 GAAGCGCGGCAAGTTCAGAT 61.639 55.000 8.83 0.00 0.00 2.90
114 115 1.639298 AAGCGCGGCAAGTTCAGATC 61.639 55.000 8.83 0.00 0.00 2.75
116 117 2.464459 CGCGGCAAGTTCAGATCCC 61.464 63.158 0.00 0.00 0.00 3.85
118 119 1.815421 CGGCAAGTTCAGATCCCCG 60.815 63.158 0.00 0.00 0.00 5.73
119 120 1.452108 GGCAAGTTCAGATCCCCGG 60.452 63.158 0.00 0.00 0.00 5.73
120 121 1.602237 GCAAGTTCAGATCCCCGGA 59.398 57.895 0.73 0.00 0.00 5.14
122 123 1.408822 GCAAGTTCAGATCCCCGGATT 60.409 52.381 0.73 0.00 34.60 3.01
123 124 2.945890 GCAAGTTCAGATCCCCGGATTT 60.946 50.000 0.73 0.00 34.60 2.17
124 125 2.684881 CAAGTTCAGATCCCCGGATTTG 59.315 50.000 0.73 7.75 37.87 2.32
126 127 1.211949 GTTCAGATCCCCGGATTTGGA 59.788 52.381 0.73 0.00 37.34 3.53
127 128 1.819753 TCAGATCCCCGGATTTGGAT 58.180 50.000 0.73 6.30 44.05 3.41
136 137 3.594453 GGATTTGGATCCCACTGCA 57.406 52.632 9.90 0.00 45.21 4.41
137 138 1.851304 GGATTTGGATCCCACTGCAA 58.149 50.000 9.90 0.00 45.21 4.08
138 139 1.753073 GGATTTGGATCCCACTGCAAG 59.247 52.381 9.90 0.00 45.21 4.01
140 141 2.205022 TTTGGATCCCACTGCAAGAG 57.795 50.000 9.90 0.00 37.43 2.85
141 142 1.361204 TTGGATCCCACTGCAAGAGA 58.639 50.000 9.90 0.00 37.43 3.10
142 143 0.615331 TGGATCCCACTGCAAGAGAC 59.385 55.000 9.90 0.00 37.43 3.36
143 144 0.615331 GGATCCCACTGCAAGAGACA 59.385 55.000 0.00 0.00 37.43 3.41
144 145 1.406614 GGATCCCACTGCAAGAGACAG 60.407 57.143 0.00 0.00 41.08 3.51
145 146 1.552337 GATCCCACTGCAAGAGACAGA 59.448 52.381 0.00 0.00 38.55 3.41
146 147 0.972134 TCCCACTGCAAGAGACAGAG 59.028 55.000 0.00 0.00 38.55 3.35
147 148 0.972134 CCCACTGCAAGAGACAGAGA 59.028 55.000 0.00 0.00 38.55 3.10
148 149 1.067000 CCCACTGCAAGAGACAGAGAG 60.067 57.143 0.00 0.00 38.55 3.20
150 151 0.243365 ACTGCAAGAGACAGAGAGCG 59.757 55.000 0.00 0.00 38.55 5.03
151 152 1.077645 CTGCAAGAGACAGAGAGCGC 61.078 60.000 0.00 0.00 37.32 5.92
152 153 2.157701 GCAAGAGACAGAGAGCGCG 61.158 63.158 0.00 0.00 0.00 6.86
153 154 2.157701 CAAGAGACAGAGAGCGCGC 61.158 63.158 26.66 26.66 0.00 6.86
154 155 3.349481 AAGAGACAGAGAGCGCGCC 62.349 63.158 30.33 19.60 0.00 6.53
155 156 4.863925 GAGACAGAGAGCGCGCCC 62.864 72.222 30.33 18.43 0.00 6.13
180 181 2.130272 ATCCGCCGCTATATCTCTCA 57.870 50.000 0.00 0.00 0.00 3.27
199 200 1.667724 CATCGCCCACATGAAAGAGAC 59.332 52.381 0.00 0.00 0.00 3.36
215 216 1.815421 GACATAGCCACCACTGCGG 60.815 63.158 0.00 0.00 42.50 5.69
290 291 5.048013 AGTCAAATTGCCTACCTAAAAGCAC 60.048 40.000 0.00 0.00 34.37 4.40
291 292 5.048013 GTCAAATTGCCTACCTAAAAGCACT 60.048 40.000 0.00 0.00 34.37 4.40
292 293 5.048083 TCAAATTGCCTACCTAAAAGCACTG 60.048 40.000 0.00 0.00 34.37 3.66
293 294 3.780804 TTGCCTACCTAAAAGCACTGA 57.219 42.857 0.00 0.00 34.37 3.41
294 295 3.780804 TGCCTACCTAAAAGCACTGAA 57.219 42.857 0.00 0.00 0.00 3.02
295 296 4.093472 TGCCTACCTAAAAGCACTGAAA 57.907 40.909 0.00 0.00 0.00 2.69
297 298 4.890581 TGCCTACCTAAAAGCACTGAAAAA 59.109 37.500 0.00 0.00 0.00 1.94
325 326 1.201343 GCTATAGCGCCGCTAATAGC 58.799 55.000 27.92 27.92 44.62 2.97
326 327 1.469251 GCTATAGCGCCGCTAATAGCA 60.469 52.381 32.01 14.85 44.62 3.49
327 328 2.186076 CTATAGCGCCGCTAATAGCAC 58.814 52.381 23.98 2.74 44.62 4.40
328 329 0.732880 ATAGCGCCGCTAATAGCACG 60.733 55.000 23.98 17.04 44.62 5.34
331 332 1.371267 CGCCGCTAATAGCACGCTA 60.371 57.895 13.15 0.39 42.58 4.26
333 334 1.466866 CGCCGCTAATAGCACGCTATA 60.467 52.381 13.15 1.16 42.58 1.31
336 337 3.181503 GCCGCTAATAGCACGCTATAGTA 60.182 47.826 13.15 1.81 42.58 1.82
337 338 4.497674 GCCGCTAATAGCACGCTATAGTAT 60.498 45.833 13.15 0.00 42.58 2.12
338 339 5.277683 GCCGCTAATAGCACGCTATAGTATA 60.278 44.000 13.15 0.83 42.58 1.47
339 340 6.568081 GCCGCTAATAGCACGCTATAGTATAT 60.568 42.308 13.15 0.00 42.58 0.86
340 341 7.360691 GCCGCTAATAGCACGCTATAGTATATA 60.361 40.741 13.15 0.00 42.58 0.86
341 342 8.169910 CCGCTAATAGCACGCTATAGTATATAG 58.830 40.741 13.15 9.59 42.58 1.31
349 350 9.397280 AGCACGCTATAGTATATAGAGAATTGA 57.603 33.333 12.60 0.00 0.00 2.57
350 351 9.440784 GCACGCTATAGTATATAGAGAATTGAC 57.559 37.037 12.60 0.00 0.00 3.18
354 355 9.872757 GCTATAGTATATAGAGAATTGACTCGC 57.127 37.037 7.80 0.00 41.25 5.03
377 378 9.672086 TCGCTAAATAAATAAATGTACAATGCC 57.328 29.630 0.00 0.00 0.00 4.40
382 383 9.889128 AAATAAATAAATGTACAATGCCTTGCT 57.111 25.926 0.00 0.00 35.69 3.91
388 389 5.695851 ATGTACAATGCCTTGCTAATAGC 57.304 39.130 5.12 5.12 42.82 2.97
420 421 2.863739 CGCTATAGCACGCTAATAGCA 58.136 47.619 23.99 0.00 40.58 3.49
421 422 3.439293 CGCTATAGCACGCTAATAGCAT 58.561 45.455 23.99 0.00 40.58 3.79
422 423 4.598062 CGCTATAGCACGCTAATAGCATA 58.402 43.478 23.99 1.56 40.58 3.14
424 425 5.687730 CGCTATAGCACGCTAATAGCATATT 59.312 40.000 23.99 0.00 40.58 1.28
425 426 6.199154 CGCTATAGCACGCTAATAGCATATTT 59.801 38.462 23.99 0.00 40.58 1.40
426 427 7.254117 CGCTATAGCACGCTAATAGCATATTTT 60.254 37.037 23.99 0.00 40.58 1.82
427 428 8.058915 GCTATAGCACGCTAATAGCATATTTTC 58.941 37.037 20.01 0.00 40.38 2.29
430 431 5.180117 AGCACGCTAATAGCATATTTTCAGG 59.820 40.000 13.15 0.00 42.58 3.86
431 432 5.617751 GCACGCTAATAGCATATTTTCAGGG 60.618 44.000 13.15 0.00 42.58 4.45
432 433 5.003804 ACGCTAATAGCATATTTTCAGGGG 58.996 41.667 13.15 0.00 42.58 4.79
433 434 5.003804 CGCTAATAGCATATTTTCAGGGGT 58.996 41.667 13.15 0.00 42.58 4.95
434 435 5.122396 CGCTAATAGCATATTTTCAGGGGTC 59.878 44.000 13.15 0.00 42.58 4.46
435 436 6.003950 GCTAATAGCATATTTTCAGGGGTCA 58.996 40.000 7.49 0.00 41.89 4.02
437 438 2.643551 AGCATATTTTCAGGGGTCACG 58.356 47.619 0.00 0.00 0.00 4.35
438 439 1.065551 GCATATTTTCAGGGGTCACGC 59.934 52.381 0.00 0.00 0.00 5.34
439 440 2.643551 CATATTTTCAGGGGTCACGCT 58.356 47.619 0.00 0.00 41.05 5.07
440 441 3.804036 CATATTTTCAGGGGTCACGCTA 58.196 45.455 0.00 0.00 37.87 4.26
441 442 4.389374 CATATTTTCAGGGGTCACGCTAT 58.611 43.478 0.00 0.00 37.87 2.97
442 443 2.871096 TTTTCAGGGGTCACGCTATT 57.129 45.000 0.00 0.00 37.87 1.73
443 444 2.871096 TTTCAGGGGTCACGCTATTT 57.129 45.000 0.00 0.00 37.87 1.40
444 445 2.871096 TTCAGGGGTCACGCTATTTT 57.129 45.000 0.00 0.00 37.87 1.82
445 446 3.985019 TTCAGGGGTCACGCTATTTTA 57.015 42.857 0.00 0.00 37.87 1.52
446 447 4.497291 TTCAGGGGTCACGCTATTTTAT 57.503 40.909 0.00 0.00 37.87 1.40
448 449 5.818678 TCAGGGGTCACGCTATTTTATAT 57.181 39.130 0.00 0.00 37.87 0.86
449 450 6.921486 TCAGGGGTCACGCTATTTTATATA 57.079 37.500 0.00 0.00 37.87 0.86
450 451 6.931838 TCAGGGGTCACGCTATTTTATATAG 58.068 40.000 0.00 0.00 37.87 1.31
451 452 5.581085 CAGGGGTCACGCTATTTTATATAGC 59.419 44.000 4.89 4.89 42.53 2.97
462 463 8.822105 GCTATTTTATATAGCGCGCTATTTTT 57.178 30.769 46.76 34.40 39.65 1.94
743 770 4.681025 GTGGAAGTTATACAACGTCGACAA 59.319 41.667 17.16 0.00 44.88 3.18
1053 3344 2.046507 CAGCGCTTGAAGGAGGCT 60.047 61.111 7.50 0.00 0.00 4.58
1075 7176 0.677731 CAAGCAGGCCGAGGATGAAA 60.678 55.000 0.00 0.00 0.00 2.69
1413 7518 2.609737 GCTCGCTGCCCGTTATATTACT 60.610 50.000 0.00 0.00 38.35 2.24
1421 7529 4.229876 GCCCGTTATATTACTGGTACGTC 58.770 47.826 0.00 0.00 0.00 4.34
1470 7592 8.371770 TGGTTTATTCTTTTAAATTGGTGCAC 57.628 30.769 8.80 8.80 0.00 4.57
1492 7614 6.808704 GCACCTTGAAGAAAATTATTGACCTC 59.191 38.462 0.00 0.00 0.00 3.85
1575 7699 1.136446 CACTACGGTAAAGTTGCGTGC 60.136 52.381 0.00 0.00 0.00 5.34
1597 7739 4.201714 GCCAGCAAACAAAGAGAAACAAAC 60.202 41.667 0.00 0.00 0.00 2.93
1600 7742 3.539401 GCAAACAAAGAGAAACAAACGCG 60.539 43.478 3.53 3.53 0.00 6.01
1603 7745 1.021968 AAAGAGAAACAAACGCGCCT 58.978 45.000 5.73 0.00 0.00 5.52
1623 7765 0.838987 GGGGAGGTACTGGTTGGTCA 60.839 60.000 0.00 0.00 41.55 4.02
1662 7804 7.437713 AGGTCATTCCTAATCACATGTCTTA 57.562 36.000 0.00 0.00 46.10 2.10
1663 7805 7.275920 AGGTCATTCCTAATCACATGTCTTAC 58.724 38.462 0.00 0.00 46.10 2.34
1664 7806 6.483640 GGTCATTCCTAATCACATGTCTTACC 59.516 42.308 0.00 0.00 0.00 2.85
1812 8019 7.938140 ACTGACTCATCTAATAGATAGGCTC 57.062 40.000 1.99 0.00 32.12 4.70
1881 8088 1.067071 GCAGTGCTACGTTCTAGGGTT 60.067 52.381 8.18 0.00 0.00 4.11
1950 8157 2.139917 TCGATTGGTGTTGGAAAGACG 58.860 47.619 0.00 0.00 41.72 4.18
2090 8298 6.584185 AAGGTTTGACTTGTACACTTGTTT 57.416 33.333 0.00 0.00 0.00 2.83
2091 8299 7.413219 CGAAGGTTTGACTTGTACACTTGTTTA 60.413 37.037 0.00 0.00 0.00 2.01
2093 8301 7.758495 AGGTTTGACTTGTACACTTGTTTAAG 58.242 34.615 0.00 0.00 39.86 1.85
2135 8387 6.505044 TCATCATGTCTCACCTTTTCATTG 57.495 37.500 0.00 0.00 0.00 2.82
2212 8464 6.938030 CCGGCCATATAGTGTTATCCTTTTTA 59.062 38.462 2.24 0.00 0.00 1.52
2393 8648 4.021981 GGGAGGAGAAAACACAATGGAAAG 60.022 45.833 0.00 0.00 0.00 2.62
2404 8659 2.622942 ACAATGGAAAGTGCACGTGATT 59.377 40.909 22.23 7.54 0.00 2.57
2416 8671 4.379793 GTGCACGTGATTTTCTCATGAAAC 59.620 41.667 22.23 0.00 42.57 2.78
2433 8688 5.895636 TGAAACAGGTATGCGAATCAATT 57.104 34.783 0.00 0.00 0.00 2.32
2469 8733 6.298441 TGTAATGTCCTCAGTGATTGATCA 57.702 37.500 0.00 0.00 34.68 2.92
2565 8830 0.598065 ATTTGAGCCGCTTTCACACC 59.402 50.000 0.00 0.00 0.00 4.16
2720 8985 2.076863 GCTTCTTACCACAATCAGCGT 58.923 47.619 0.00 0.00 0.00 5.07
2742 9007 8.948145 AGCGTACGAGAAAGACATAATATCTAT 58.052 33.333 21.65 0.00 0.00 1.98
2807 9072 5.263599 ACTTGTTAATCCATGCATCCTTCA 58.736 37.500 0.00 0.00 0.00 3.02
2866 9131 0.802494 GTGGGTACGAAAGCATGTGG 59.198 55.000 0.00 0.00 0.00 4.17
2922 9187 3.347216 AGCATGTAAAGGCTCAACGATT 58.653 40.909 0.00 0.00 34.76 3.34
3024 9289 5.445939 CCTGCTACAAGTTATGCTGTAAACG 60.446 44.000 0.00 0.00 0.00 3.60
3028 9293 5.591643 ACAAGTTATGCTGTAAACGTCAG 57.408 39.130 0.00 0.00 36.18 3.51
3091 9358 8.240682 TGCATATACTTGTATTTTCGCAAAAGT 58.759 29.630 0.00 0.00 33.22 2.66
3121 9389 8.198109 AGACTTGCATATACTTATATTAGCGGG 58.802 37.037 0.00 0.00 0.00 6.13
3151 9419 8.103935 TGATATGTGGGTTGTTAGTGATTTACA 58.896 33.333 0.00 0.00 0.00 2.41
3186 9455 4.640771 AACAGGACTTTGCTATCTTCCA 57.359 40.909 0.00 0.00 0.00 3.53
3207 9476 8.450578 TTCCAATCGTTCTGAAATATAGCATT 57.549 30.769 0.00 0.00 0.00 3.56
3226 9495 5.007430 AGCATTAGATCTGAACGATTGCTTG 59.993 40.000 5.18 0.00 38.63 4.01
3251 9520 2.873609 CATGCAGATACTAGCGCTAGG 58.126 52.381 39.50 25.81 37.49 3.02
3268 9537 0.461339 AGGGCGGTAACTTGTATGCG 60.461 55.000 0.00 0.00 0.00 4.73
3275 9544 1.129811 GTAACTTGTATGCGTGGGTGC 59.870 52.381 0.00 0.00 0.00 5.01
3277 9546 2.360600 TTGTATGCGTGGGTGCCC 60.361 61.111 0.00 0.00 0.00 5.36
3286 9555 2.536621 TGGGTGCCCAGGAGTAGT 59.463 61.111 5.73 0.00 41.89 2.73
3290 9559 0.912486 GGTGCCCAGGAGTAGTCATT 59.088 55.000 0.00 0.00 0.00 2.57
3323 9592 4.722526 AGGGCCTAATTACATGCATGTA 57.277 40.909 31.03 31.03 41.97 2.29
3324 9593 4.655963 AGGGCCTAATTACATGCATGTAG 58.344 43.478 32.09 24.49 43.44 2.74
3326 9595 5.070001 GGGCCTAATTACATGCATGTAGAA 58.930 41.667 32.09 24.06 43.44 2.10
3353 9622 2.624838 CAAAAGTGATGGTGTCAGCCTT 59.375 45.455 0.00 0.00 37.56 4.35
3360 9629 0.038166 TGGTGTCAGCCTTGATTCCC 59.962 55.000 0.00 0.00 35.39 3.97
3400 9669 8.939201 TTCAAAATGTTTTGTAGCTCAAATCA 57.061 26.923 15.51 17.17 45.77 2.57
3447 9716 7.665561 TTCACATAAAAGATTCATCGTGACA 57.334 32.000 0.00 0.00 32.27 3.58
3455 9724 4.248859 AGATTCATCGTGACAAGACCTTG 58.751 43.478 8.11 8.11 45.58 3.61
3460 9729 5.063204 TCATCGTGACAAGACCTTGAAAAT 58.937 37.500 15.84 0.00 42.93 1.82
3467 9736 7.095229 CGTGACAAGACCTTGAAAATTAGATCA 60.095 37.037 15.84 3.86 42.93 2.92
3498 9772 5.163893 GCTATGTTTCGACATCTTTTTCGGA 60.164 40.000 0.00 0.00 35.89 4.55
3505 9779 8.414923 GTTTCGACATCTTTTTCGGATAAAAAC 58.585 33.333 0.00 0.00 35.89 2.43
3535 9809 3.786048 GCTTGTGCTACGCAAATTATCAC 59.214 43.478 0.00 0.00 41.47 3.06
3538 9812 4.006989 TGTGCTACGCAAATTATCACCTT 58.993 39.130 0.00 0.00 41.47 3.50
3582 9856 6.005198 TGTTGTTTATCCAGAAATTACCGGT 58.995 36.000 13.98 13.98 0.00 5.28
3583 9857 6.149807 TGTTGTTTATCCAGAAATTACCGGTC 59.850 38.462 12.40 0.00 0.00 4.79
3584 9858 5.806818 TGTTTATCCAGAAATTACCGGTCA 58.193 37.500 12.40 0.00 0.00 4.02
3585 9859 5.644636 TGTTTATCCAGAAATTACCGGTCAC 59.355 40.000 12.40 0.00 0.00 3.67
3586 9860 3.992943 ATCCAGAAATTACCGGTCACA 57.007 42.857 12.40 0.00 0.00 3.58
3591 9865 5.536916 TCCAGAAATTACCGGTCACAAAAAT 59.463 36.000 12.40 0.01 0.00 1.82
3592 9866 5.633182 CCAGAAATTACCGGTCACAAAAATG 59.367 40.000 12.40 1.73 0.00 2.32
3593 9867 5.633182 CAGAAATTACCGGTCACAAAAATGG 59.367 40.000 12.40 0.00 0.00 3.16
3594 9868 5.303333 AGAAATTACCGGTCACAAAAATGGT 59.697 36.000 12.40 0.00 0.00 3.55
3595 9869 5.538849 AATTACCGGTCACAAAAATGGTT 57.461 34.783 12.40 0.00 0.00 3.67
3596 9870 4.571372 TTACCGGTCACAAAAATGGTTC 57.429 40.909 12.40 0.00 0.00 3.62
3597 9871 1.684450 ACCGGTCACAAAAATGGTTCC 59.316 47.619 0.00 0.00 0.00 3.62
3598 9872 1.683917 CCGGTCACAAAAATGGTTCCA 59.316 47.619 0.00 0.00 0.00 3.53
3599 9873 2.544903 CCGGTCACAAAAATGGTTCCAC 60.545 50.000 0.00 0.00 0.00 4.02
3600 9874 2.544903 CGGTCACAAAAATGGTTCCACC 60.545 50.000 0.00 0.00 39.22 4.61
3624 9900 2.029649 ACTTCTTTCCACATGCACATGC 60.030 45.455 10.50 0.00 42.39 4.06
3649 9926 4.156556 TGCATGCACTAGAGGACAAAAATC 59.843 41.667 18.46 0.00 0.00 2.17
3650 9927 4.397417 GCATGCACTAGAGGACAAAAATCT 59.603 41.667 14.21 0.00 0.00 2.40
3652 9929 6.238320 GCATGCACTAGAGGACAAAAATCTAG 60.238 42.308 14.21 6.87 45.26 2.43
3674 9951 8.580720 TCTAGTAATGTCATTCTAGATGCTTCC 58.419 37.037 19.87 0.00 35.48 3.46
3678 9956 7.507733 AATGTCATTCTAGATGCTTCCATTC 57.492 36.000 0.00 0.00 0.00 2.67
3684 9962 7.562454 TCATTCTAGATGCTTCCATTCCAAAAT 59.438 33.333 0.00 0.00 0.00 1.82
3687 9965 7.775120 TCTAGATGCTTCCATTCCAAAATTTC 58.225 34.615 0.00 0.00 0.00 2.17
3694 9972 7.501559 TGCTTCCATTCCAAAATTTCAAAATGA 59.498 29.630 15.52 5.14 0.00 2.57
3695 9973 8.517056 GCTTCCATTCCAAAATTTCAAAATGAT 58.483 29.630 15.52 0.00 0.00 2.45
3711 9989 8.850454 TCAAAATGATTTATAAGCTAAACCGC 57.150 30.769 0.00 0.00 0.00 5.68
3717 9995 1.660167 ATAAGCTAAACCGCCGGTTC 58.340 50.000 23.59 10.17 46.20 3.62
3718 9996 0.321021 TAAGCTAAACCGCCGGTTCA 59.679 50.000 23.59 6.89 46.20 3.18
3727 10005 1.000717 ACCGCCGGTTCAATCAAAAAG 60.001 47.619 1.02 0.00 27.29 2.27
3749 10027 9.505995 AAAAGTCGTTTTCACATAAAAATACGT 57.494 25.926 0.00 0.00 29.29 3.57
3750 10028 8.703823 AAGTCGTTTTCACATAAAAATACGTC 57.296 30.769 0.00 0.00 31.29 4.34
3751 10029 7.005380 AGTCGTTTTCACATAAAAATACGTCG 58.995 34.615 0.00 0.00 31.29 5.12
3754 10033 3.910862 TCACATAAAAATACGTCGCGG 57.089 42.857 6.13 0.00 0.00 6.46
3761 10040 0.457337 AAATACGTCGCGGTGAGACC 60.457 55.000 6.13 0.00 35.33 3.85
3763 10042 1.310933 ATACGTCGCGGTGAGACCTT 61.311 55.000 6.13 0.00 35.66 3.50
3765 10044 2.649034 GTCGCGGTGAGACCTTCA 59.351 61.111 6.13 0.00 35.66 3.02
3775 10054 5.238583 CGGTGAGACCTTCAAAACTAGATT 58.761 41.667 0.00 0.00 37.61 2.40
3780 10059 8.041323 GTGAGACCTTCAAAACTAGATTCCATA 58.959 37.037 0.00 0.00 37.61 2.74
3798 10077 8.868522 ATTCCATATTGATATGTTCCAACGAT 57.131 30.769 9.47 0.00 38.73 3.73
3835 10121 4.326255 CCAGGCCTGGCTAAAGTG 57.674 61.111 38.39 13.03 44.73 3.16
3836 10122 1.380302 CCAGGCCTGGCTAAAGTGT 59.620 57.895 38.39 0.00 44.73 3.55
3837 10123 0.251341 CCAGGCCTGGCTAAAGTGTT 60.251 55.000 38.39 0.00 44.73 3.32
3840 10126 3.356290 CAGGCCTGGCTAAAGTGTTTAT 58.644 45.455 26.14 0.00 0.00 1.40
3841 10127 3.378427 CAGGCCTGGCTAAAGTGTTTATC 59.622 47.826 26.14 0.00 0.00 1.75
3842 10128 3.010138 AGGCCTGGCTAAAGTGTTTATCA 59.990 43.478 19.68 0.00 0.00 2.15
3843 10129 3.378427 GGCCTGGCTAAAGTGTTTATCAG 59.622 47.826 19.68 0.00 0.00 2.90
3844 10130 4.010349 GCCTGGCTAAAGTGTTTATCAGT 58.990 43.478 12.43 0.00 30.80 3.41
3847 10134 5.940470 CCTGGCTAAAGTGTTTATCAGTTCT 59.060 40.000 0.00 0.00 38.58 3.01
3849 10136 5.181245 TGGCTAAAGTGTTTATCAGTTCTGC 59.819 40.000 0.00 0.00 38.58 4.26
3854 10141 3.499918 AGTGTTTATCAGTTCTGCTGTGC 59.500 43.478 0.00 0.00 45.23 4.57
3857 10144 3.586100 TTATCAGTTCTGCTGTGCGTA 57.414 42.857 0.00 0.00 45.23 4.42
3859 10146 1.713597 TCAGTTCTGCTGTGCGTATG 58.286 50.000 0.00 0.00 45.23 2.39
3863 10150 2.993899 AGTTCTGCTGTGCGTATGTTAC 59.006 45.455 0.00 0.00 0.00 2.50
3864 10151 2.734276 TCTGCTGTGCGTATGTTACA 57.266 45.000 0.00 0.00 0.00 2.41
3868 10155 2.159585 TGCTGTGCGTATGTTACAATGC 60.160 45.455 0.00 0.00 0.00 3.56
3873 10160 6.043327 TGTGCGTATGTTACAATGCTATTC 57.957 37.500 11.00 3.62 0.00 1.75
3875 10162 6.259829 TGTGCGTATGTTACAATGCTATTCAT 59.740 34.615 11.00 0.00 36.87 2.57
3892 10179 9.314133 TGCTATTCATACATGAGTTATAGGAGT 57.686 33.333 0.00 0.00 38.19 3.85
3893 10180 9.579768 GCTATTCATACATGAGTTATAGGAGTG 57.420 37.037 0.00 0.00 38.19 3.51
3902 10189 9.787435 ACATGAGTTATAGGAGTGTTTTTAACA 57.213 29.630 0.00 0.00 39.52 2.41
3929 10216 6.844097 TTTTTGGGGTCAGATAATTACCAC 57.156 37.500 0.00 0.00 37.20 4.16
3930 10217 4.513406 TTGGGGTCAGATAATTACCACC 57.487 45.455 0.00 0.00 35.73 4.61
3931 10218 2.781174 TGGGGTCAGATAATTACCACCC 59.219 50.000 11.95 11.95 42.58 4.61
3932 10219 3.503800 GGGTCAGATAATTACCACCCC 57.496 52.381 10.17 3.55 38.03 4.95
3933 10220 3.053826 GGGTCAGATAATTACCACCCCT 58.946 50.000 10.17 0.00 38.03 4.79
3934 10221 3.181443 GGGTCAGATAATTACCACCCCTG 60.181 52.174 10.17 0.00 38.03 4.45
3935 10222 3.181443 GGTCAGATAATTACCACCCCTGG 60.181 52.174 0.00 0.00 44.26 4.45
3936 10223 3.053077 TCAGATAATTACCACCCCTGGG 58.947 50.000 5.50 5.50 42.74 4.45
3937 10224 1.780919 AGATAATTACCACCCCTGGGC 59.219 52.381 7.39 0.00 42.74 5.36
3938 10225 1.780919 GATAATTACCACCCCTGGGCT 59.219 52.381 7.39 0.00 42.74 5.19
3939 10226 2.590793 TAATTACCACCCCTGGGCTA 57.409 50.000 7.39 0.00 42.74 3.93
3940 10227 1.688750 AATTACCACCCCTGGGCTAA 58.311 50.000 7.39 0.20 42.74 3.09
3941 10228 1.222567 ATTACCACCCCTGGGCTAAG 58.777 55.000 7.39 0.00 42.74 2.18
3942 10229 0.178855 TTACCACCCCTGGGCTAAGT 60.179 55.000 7.39 4.21 42.74 2.24
3943 10230 0.717801 TACCACCCCTGGGCTAAGTA 59.282 55.000 7.39 3.19 42.74 2.24
3944 10231 0.178855 ACCACCCCTGGGCTAAGTAA 60.179 55.000 7.39 0.00 42.74 2.24
3945 10232 0.546598 CCACCCCTGGGCTAAGTAAG 59.453 60.000 7.39 0.00 39.32 2.34
3946 10233 1.286248 CACCCCTGGGCTAAGTAAGT 58.714 55.000 7.39 0.00 39.32 2.24
3947 10234 2.474112 CACCCCTGGGCTAAGTAAGTA 58.526 52.381 7.39 0.00 39.32 2.24
3948 10235 2.841881 CACCCCTGGGCTAAGTAAGTAA 59.158 50.000 7.39 0.00 39.32 2.24
3949 10236 2.842496 ACCCCTGGGCTAAGTAAGTAAC 59.158 50.000 7.39 0.00 39.32 2.50
3950 10237 2.172082 CCCCTGGGCTAAGTAAGTAACC 59.828 54.545 7.39 0.00 0.00 2.85
3951 10238 2.841881 CCCTGGGCTAAGTAAGTAACCA 59.158 50.000 0.00 0.00 0.00 3.67
3952 10239 3.118371 CCCTGGGCTAAGTAAGTAACCAG 60.118 52.174 0.00 0.00 40.46 4.00
3953 10240 3.532542 CTGGGCTAAGTAAGTAACCAGC 58.467 50.000 0.00 0.00 37.12 4.85
3954 10241 3.178865 TGGGCTAAGTAAGTAACCAGCT 58.821 45.455 0.00 0.00 37.03 4.24
3955 10242 3.585732 TGGGCTAAGTAAGTAACCAGCTT 59.414 43.478 0.00 0.00 37.03 3.74
3956 10243 4.042435 TGGGCTAAGTAAGTAACCAGCTTT 59.958 41.667 0.00 0.00 37.03 3.51
3957 10244 4.395231 GGGCTAAGTAAGTAACCAGCTTTG 59.605 45.833 0.00 0.00 37.03 2.77
3958 10245 5.001874 GGCTAAGTAAGTAACCAGCTTTGT 58.998 41.667 0.00 0.00 37.03 2.83
3959 10246 5.472478 GGCTAAGTAAGTAACCAGCTTTGTT 59.528 40.000 4.00 4.00 37.03 2.83
3960 10247 6.652062 GGCTAAGTAAGTAACCAGCTTTGTTA 59.348 38.462 2.22 2.22 37.03 2.41
3961 10248 7.336176 GGCTAAGTAAGTAACCAGCTTTGTTAT 59.664 37.037 8.44 0.00 37.03 1.89
3962 10249 8.175716 GCTAAGTAAGTAACCAGCTTTGTTATG 58.824 37.037 8.44 0.00 35.02 1.90
3963 10250 6.496338 AGTAAGTAACCAGCTTTGTTATGC 57.504 37.500 8.44 0.00 31.41 3.14
3964 10251 6.001460 AGTAAGTAACCAGCTTTGTTATGCA 58.999 36.000 8.44 0.00 31.41 3.96
3965 10252 5.982890 AAGTAACCAGCTTTGTTATGCAT 57.017 34.783 3.79 3.79 31.41 3.96
3966 10253 5.567138 AGTAACCAGCTTTGTTATGCATC 57.433 39.130 0.19 0.00 31.41 3.91
3967 10254 5.256474 AGTAACCAGCTTTGTTATGCATCT 58.744 37.500 0.19 0.00 31.41 2.90
3968 10255 6.414732 AGTAACCAGCTTTGTTATGCATCTA 58.585 36.000 0.19 0.00 31.41 1.98
3969 10256 7.056635 AGTAACCAGCTTTGTTATGCATCTAT 58.943 34.615 0.19 0.00 31.41 1.98
3970 10257 6.780457 AACCAGCTTTGTTATGCATCTATT 57.220 33.333 0.19 0.00 0.00 1.73
3971 10258 7.880160 AACCAGCTTTGTTATGCATCTATTA 57.120 32.000 0.19 0.00 0.00 0.98
3972 10259 7.264373 ACCAGCTTTGTTATGCATCTATTAC 57.736 36.000 0.19 0.00 0.00 1.89
3973 10260 6.263168 ACCAGCTTTGTTATGCATCTATTACC 59.737 38.462 0.19 0.00 0.00 2.85
3974 10261 6.262944 CCAGCTTTGTTATGCATCTATTACCA 59.737 38.462 0.19 0.00 0.00 3.25
3975 10262 7.040201 CCAGCTTTGTTATGCATCTATTACCAT 60.040 37.037 0.19 0.00 0.00 3.55
3976 10263 7.806487 CAGCTTTGTTATGCATCTATTACCATG 59.194 37.037 0.19 0.00 0.00 3.66
3977 10264 6.583806 GCTTTGTTATGCATCTATTACCATGC 59.416 38.462 0.19 0.00 44.87 4.06
3982 10269 3.127081 GCATCTATTACCATGCGCATG 57.873 47.619 37.55 37.55 36.33 4.06
3983 10270 2.743664 GCATCTATTACCATGCGCATGA 59.256 45.455 43.71 28.58 41.20 3.07
3984 10271 3.181513 GCATCTATTACCATGCGCATGAG 60.182 47.826 43.71 34.44 41.20 2.90
3985 10272 3.751479 TCTATTACCATGCGCATGAGT 57.249 42.857 43.71 37.18 41.20 3.41
3986 10273 4.071961 TCTATTACCATGCGCATGAGTT 57.928 40.909 43.71 30.26 41.20 3.01
3987 10274 5.208463 TCTATTACCATGCGCATGAGTTA 57.792 39.130 43.71 32.10 41.20 2.24
3988 10275 4.988540 TCTATTACCATGCGCATGAGTTAC 59.011 41.667 43.71 0.00 41.20 2.50
3989 10276 1.948104 TACCATGCGCATGAGTTACC 58.052 50.000 43.71 0.00 41.20 2.85
3990 10277 1.089481 ACCATGCGCATGAGTTACCG 61.089 55.000 43.71 29.20 41.20 4.02
3991 10278 0.809636 CCATGCGCATGAGTTACCGA 60.810 55.000 43.71 4.86 41.20 4.69
3992 10279 0.578683 CATGCGCATGAGTTACCGAG 59.421 55.000 40.62 13.37 41.20 4.63
3993 10280 0.530650 ATGCGCATGAGTTACCGAGG 60.531 55.000 24.69 0.00 0.00 4.63
3994 10281 1.883084 GCGCATGAGTTACCGAGGG 60.883 63.158 0.30 0.00 0.00 4.30
3995 10282 1.227263 CGCATGAGTTACCGAGGGG 60.227 63.158 0.00 0.00 40.11 4.79
4012 10299 6.926313 CCGAGGGGTGTTTTTAAATAAATCA 58.074 36.000 0.00 0.00 0.00 2.57
4013 10300 7.379750 CCGAGGGGTGTTTTTAAATAAATCAA 58.620 34.615 0.00 0.00 0.00 2.57
4014 10301 8.038351 CCGAGGGGTGTTTTTAAATAAATCAAT 58.962 33.333 0.00 0.00 0.00 2.57
4018 10305 9.386010 GGGGTGTTTTTAAATAAATCAATACCC 57.614 33.333 18.03 18.03 41.58 3.69
4019 10306 9.945904 GGGTGTTTTTAAATAAATCAATACCCA 57.054 29.630 19.98 0.00 41.73 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.554692 CAACCGACGGCGATGCTC 61.555 66.667 15.16 0.00 40.82 4.26
42 43 3.191539 CGAGGGAAAGCTCAGCGC 61.192 66.667 0.00 0.00 39.57 5.92
43 44 2.510238 CCGAGGGAAAGCTCAGCG 60.510 66.667 0.00 0.00 0.00 5.18
44 45 2.821810 GCCGAGGGAAAGCTCAGC 60.822 66.667 0.00 0.00 0.00 4.26
45 46 1.094073 CATGCCGAGGGAAAGCTCAG 61.094 60.000 0.00 0.00 0.00 3.35
46 47 1.078214 CATGCCGAGGGAAAGCTCA 60.078 57.895 0.00 0.00 0.00 4.26
47 48 2.476320 GCATGCCGAGGGAAAGCTC 61.476 63.158 6.36 0.00 0.00 4.09
49 50 3.521796 GGCATGCCGAGGGAAAGC 61.522 66.667 23.48 0.00 0.00 3.51
51 52 2.257409 GAGAGGCATGCCGAGGGAAA 62.257 60.000 30.50 0.00 41.95 3.13
53 54 3.157252 GAGAGGCATGCCGAGGGA 61.157 66.667 30.50 0.00 41.95 4.20
54 55 2.815945 ATGAGAGGCATGCCGAGGG 61.816 63.158 30.50 0.00 41.95 4.30
55 56 2.827423 ATGAGAGGCATGCCGAGG 59.173 61.111 30.50 0.00 41.95 4.63
62 63 1.537172 ATGCTGGCATGAGAGGCAT 59.463 52.632 7.31 4.04 43.56 4.40
63 64 3.004090 ATGCTGGCATGAGAGGCA 58.996 55.556 7.31 0.90 42.25 4.75
72 73 1.065199 CCTAAAGTCCTCATGCTGGCA 60.065 52.381 0.00 0.00 0.00 4.92
73 74 1.210478 TCCTAAAGTCCTCATGCTGGC 59.790 52.381 0.00 0.00 0.00 4.85
74 75 2.768527 TCTCCTAAAGTCCTCATGCTGG 59.231 50.000 0.00 0.00 0.00 4.85
75 76 4.440880 CTTCTCCTAAAGTCCTCATGCTG 58.559 47.826 0.00 0.00 0.00 4.41
76 77 3.118445 GCTTCTCCTAAAGTCCTCATGCT 60.118 47.826 0.00 0.00 0.00 3.79
77 78 3.202097 GCTTCTCCTAAAGTCCTCATGC 58.798 50.000 0.00 0.00 0.00 4.06
78 79 3.452474 CGCTTCTCCTAAAGTCCTCATG 58.548 50.000 0.00 0.00 0.00 3.07
80 81 1.204941 GCGCTTCTCCTAAAGTCCTCA 59.795 52.381 0.00 0.00 0.00 3.86
81 82 1.799548 CGCGCTTCTCCTAAAGTCCTC 60.800 57.143 5.56 0.00 0.00 3.71
82 83 0.173708 CGCGCTTCTCCTAAAGTCCT 59.826 55.000 5.56 0.00 0.00 3.85
83 84 0.806492 CCGCGCTTCTCCTAAAGTCC 60.806 60.000 5.56 0.00 0.00 3.85
84 85 1.422179 GCCGCGCTTCTCCTAAAGTC 61.422 60.000 5.56 0.00 0.00 3.01
86 87 1.019278 TTGCCGCGCTTCTCCTAAAG 61.019 55.000 5.56 0.00 0.00 1.85
87 88 1.004320 TTGCCGCGCTTCTCCTAAA 60.004 52.632 5.56 0.00 0.00 1.85
88 89 1.447838 CTTGCCGCGCTTCTCCTAA 60.448 57.895 5.56 0.00 0.00 2.69
89 90 2.167398 AACTTGCCGCGCTTCTCCTA 62.167 55.000 5.56 0.00 0.00 2.94
90 91 3.537206 AACTTGCCGCGCTTCTCCT 62.537 57.895 5.56 0.00 0.00 3.69
91 92 3.028366 GAACTTGCCGCGCTTCTCC 62.028 63.158 5.56 0.00 0.00 3.71
93 94 2.280797 TGAACTTGCCGCGCTTCT 60.281 55.556 5.56 0.00 0.00 2.85
95 96 1.639298 GATCTGAACTTGCCGCGCTT 61.639 55.000 5.56 0.00 0.00 4.68
96 97 2.046892 ATCTGAACTTGCCGCGCT 60.047 55.556 5.56 0.00 0.00 5.92
97 98 2.401195 GATCTGAACTTGCCGCGC 59.599 61.111 0.00 0.00 0.00 6.86
98 99 2.464459 GGGATCTGAACTTGCCGCG 61.464 63.158 0.00 0.00 0.00 6.46
99 100 2.115291 GGGGATCTGAACTTGCCGC 61.115 63.158 0.00 0.00 0.00 6.53
100 101 1.815421 CGGGGATCTGAACTTGCCG 60.815 63.158 0.00 0.00 0.00 5.69
101 102 1.452108 CCGGGGATCTGAACTTGCC 60.452 63.158 0.00 0.00 0.00 4.52
103 104 2.684881 CAAATCCGGGGATCTGAACTTG 59.315 50.000 0.00 0.00 33.08 3.16
104 105 2.357154 CCAAATCCGGGGATCTGAACTT 60.357 50.000 0.00 0.00 33.08 2.66
105 106 1.212935 CCAAATCCGGGGATCTGAACT 59.787 52.381 0.00 0.00 33.08 3.01
106 107 1.211949 TCCAAATCCGGGGATCTGAAC 59.788 52.381 0.00 0.00 33.08 3.18
108 109 1.819753 ATCCAAATCCGGGGATCTGA 58.180 50.000 0.00 0.34 39.74 3.27
119 120 2.686915 CTCTTGCAGTGGGATCCAAATC 59.313 50.000 15.23 0.00 34.18 2.17
120 121 2.309755 TCTCTTGCAGTGGGATCCAAAT 59.690 45.455 15.23 0.00 34.18 2.32
122 123 1.003580 GTCTCTTGCAGTGGGATCCAA 59.996 52.381 15.23 0.00 34.18 3.53
123 124 0.615331 GTCTCTTGCAGTGGGATCCA 59.385 55.000 15.23 0.00 0.00 3.41
124 125 0.615331 TGTCTCTTGCAGTGGGATCC 59.385 55.000 1.92 1.92 0.00 3.36
126 127 1.554160 CTCTGTCTCTTGCAGTGGGAT 59.446 52.381 0.00 0.00 35.60 3.85
127 128 0.972134 CTCTGTCTCTTGCAGTGGGA 59.028 55.000 0.00 0.00 35.60 4.37
128 129 0.972134 TCTCTGTCTCTTGCAGTGGG 59.028 55.000 0.00 0.00 35.60 4.61
129 130 1.672441 GCTCTCTGTCTCTTGCAGTGG 60.672 57.143 0.00 0.00 35.60 4.00
130 131 1.712401 GCTCTCTGTCTCTTGCAGTG 58.288 55.000 0.00 0.00 35.60 3.66
131 132 0.243365 CGCTCTCTGTCTCTTGCAGT 59.757 55.000 0.00 0.00 35.60 4.40
132 133 1.077645 GCGCTCTCTGTCTCTTGCAG 61.078 60.000 0.00 0.00 35.43 4.41
134 135 2.157701 CGCGCTCTCTGTCTCTTGC 61.158 63.158 5.56 0.00 0.00 4.01
136 137 2.180518 GCGCGCTCTCTGTCTCTT 59.819 61.111 26.67 0.00 0.00 2.85
137 138 3.821055 GGCGCGCTCTCTGTCTCT 61.821 66.667 32.29 0.00 0.00 3.10
138 139 4.863925 GGGCGCGCTCTCTGTCTC 62.864 72.222 32.29 10.56 0.00 3.36
159 160 3.206964 TGAGAGATATAGCGGCGGATAG 58.793 50.000 9.78 0.00 0.00 2.08
160 161 3.277142 TGAGAGATATAGCGGCGGATA 57.723 47.619 9.78 0.00 0.00 2.59
161 162 2.130272 TGAGAGATATAGCGGCGGAT 57.870 50.000 9.78 0.00 0.00 4.18
162 163 2.017782 GATGAGAGATATAGCGGCGGA 58.982 52.381 9.78 0.00 0.00 5.54
163 164 1.268285 CGATGAGAGATATAGCGGCGG 60.268 57.143 9.78 0.00 0.00 6.13
164 165 1.858000 GCGATGAGAGATATAGCGGCG 60.858 57.143 0.51 0.51 0.00 6.46
165 166 1.535015 GGCGATGAGAGATATAGCGGC 60.535 57.143 0.00 0.00 35.81 6.53
166 167 1.066303 GGGCGATGAGAGATATAGCGG 59.934 57.143 0.00 0.00 0.00 5.52
167 168 1.745653 TGGGCGATGAGAGATATAGCG 59.254 52.381 0.00 0.00 0.00 4.26
180 181 1.278985 TGTCTCTTTCATGTGGGCGAT 59.721 47.619 0.00 0.00 0.00 4.58
306 307 1.201343 GCTATTAGCGGCGCTATAGC 58.799 55.000 37.08 37.08 41.01 2.97
307 308 2.186076 GTGCTATTAGCGGCGCTATAG 58.814 52.381 38.35 34.01 46.26 1.31
309 310 0.732880 CGTGCTATTAGCGGCGCTAT 60.733 55.000 38.35 28.53 46.26 2.97
310 311 1.371267 CGTGCTATTAGCGGCGCTA 60.371 57.895 35.39 35.39 46.26 4.26
311 312 2.658593 CGTGCTATTAGCGGCGCT 60.659 61.111 37.84 37.84 46.26 5.92
314 315 2.186076 CTATAGCGTGCTATTAGCGGC 58.814 52.381 18.62 18.55 46.26 6.53
315 316 3.489180 ACTATAGCGTGCTATTAGCGG 57.511 47.619 18.62 6.68 46.26 5.52
316 317 8.923683 TCTATATACTATAGCGTGCTATTAGCG 58.076 37.037 18.62 8.56 46.26 4.26
323 324 9.397280 TCAATTCTCTATATACTATAGCGTGCT 57.603 33.333 0.00 0.00 0.00 4.40
324 325 9.440784 GTCAATTCTCTATATACTATAGCGTGC 57.559 37.037 0.00 0.00 0.00 5.34
328 329 9.872757 GCGAGTCAATTCTCTATATACTATAGC 57.127 37.037 0.00 0.00 32.83 2.97
351 352 9.672086 GGCATTGTACATTTATTTATTTAGCGA 57.328 29.630 0.00 0.00 0.00 4.93
352 353 9.677567 AGGCATTGTACATTTATTTATTTAGCG 57.322 29.630 0.00 0.00 0.00 4.26
356 357 9.889128 AGCAAGGCATTGTACATTTATTTATTT 57.111 25.926 13.30 0.00 38.76 1.40
362 363 8.299570 GCTATTAGCAAGGCATTGTACATTTAT 58.700 33.333 13.30 0.62 41.89 1.40
363 364 7.648142 GCTATTAGCAAGGCATTGTACATTTA 58.352 34.615 13.30 0.00 41.89 1.40
364 365 6.507023 GCTATTAGCAAGGCATTGTACATTT 58.493 36.000 13.30 0.00 41.89 2.32
365 366 6.076981 GCTATTAGCAAGGCATTGTACATT 57.923 37.500 13.30 0.00 41.89 2.71
366 367 5.695851 GCTATTAGCAAGGCATTGTACAT 57.304 39.130 13.30 4.82 41.89 2.29
401 402 7.470289 AAATATGCTATTAGCGTGCTATAGC 57.530 36.000 18.18 18.18 46.26 2.97
404 405 7.065085 CCTGAAAATATGCTATTAGCGTGCTAT 59.935 37.037 18.61 5.81 46.26 2.97
406 407 5.180117 CCTGAAAATATGCTATTAGCGTGCT 59.820 40.000 18.61 0.00 46.26 4.40
407 408 5.385617 CCTGAAAATATGCTATTAGCGTGC 58.614 41.667 18.61 5.49 46.26 5.34
408 409 5.106555 CCCCTGAAAATATGCTATTAGCGTG 60.107 44.000 18.61 2.19 46.26 5.34
409 410 5.003804 CCCCTGAAAATATGCTATTAGCGT 58.996 41.667 14.53 14.53 46.26 5.07
410 411 5.003804 ACCCCTGAAAATATGCTATTAGCG 58.996 41.667 10.94 0.00 46.26 4.26
411 412 6.003950 TGACCCCTGAAAATATGCTATTAGC 58.996 40.000 8.80 8.80 42.82 3.09
412 413 6.147821 CGTGACCCCTGAAAATATGCTATTAG 59.852 42.308 0.00 0.00 0.00 1.73
413 414 5.995282 CGTGACCCCTGAAAATATGCTATTA 59.005 40.000 0.00 0.00 0.00 0.98
414 415 4.821805 CGTGACCCCTGAAAATATGCTATT 59.178 41.667 0.00 0.00 0.00 1.73
416 417 3.804036 CGTGACCCCTGAAAATATGCTA 58.196 45.455 0.00 0.00 0.00 3.49
417 418 2.643551 CGTGACCCCTGAAAATATGCT 58.356 47.619 0.00 0.00 0.00 3.79
419 420 2.643551 AGCGTGACCCCTGAAAATATG 58.356 47.619 0.00 0.00 0.00 1.78
420 421 4.706842 ATAGCGTGACCCCTGAAAATAT 57.293 40.909 0.00 0.00 0.00 1.28
421 422 4.497291 AATAGCGTGACCCCTGAAAATA 57.503 40.909 0.00 0.00 0.00 1.40
422 423 3.366052 AATAGCGTGACCCCTGAAAAT 57.634 42.857 0.00 0.00 0.00 1.82
424 425 2.871096 AAATAGCGTGACCCCTGAAA 57.129 45.000 0.00 0.00 0.00 2.69
425 426 2.871096 AAAATAGCGTGACCCCTGAA 57.129 45.000 0.00 0.00 0.00 3.02
426 427 5.818678 ATATAAAATAGCGTGACCCCTGA 57.181 39.130 0.00 0.00 0.00 3.86
427 428 5.581085 GCTATATAAAATAGCGTGACCCCTG 59.419 44.000 1.56 0.00 37.79 4.45
437 438 8.822105 AAAAATAGCGCGCTATATAAAATAGC 57.178 30.769 43.81 8.21 42.53 2.97
460 461 3.423867 GCGTCGCTTTTAGCAATGAAAAA 59.576 39.130 10.68 0.00 42.58 1.94
461 462 2.977169 GCGTCGCTTTTAGCAATGAAAA 59.023 40.909 10.68 0.00 42.58 2.29
462 463 2.031595 TGCGTCGCTTTTAGCAATGAAA 60.032 40.909 19.50 0.00 42.58 2.69
465 466 1.250476 GTGCGTCGCTTTTAGCAATG 58.750 50.000 19.50 0.00 42.58 2.82
467 468 1.572447 GGTGCGTCGCTTTTAGCAA 59.428 52.632 19.50 0.00 42.58 3.91
468 469 2.663478 CGGTGCGTCGCTTTTAGCA 61.663 57.895 19.50 0.00 42.58 3.49
469 470 1.693083 ATCGGTGCGTCGCTTTTAGC 61.693 55.000 19.50 6.59 38.02 3.09
470 471 0.719465 AATCGGTGCGTCGCTTTTAG 59.281 50.000 19.50 5.67 0.00 1.85
471 472 1.149987 AAATCGGTGCGTCGCTTTTA 58.850 45.000 19.50 2.03 0.00 1.52
472 473 0.309612 AAAATCGGTGCGTCGCTTTT 59.690 45.000 19.50 12.90 34.86 2.27
474 475 1.946267 AAAAATCGGTGCGTCGCTT 59.054 47.368 19.50 0.22 0.00 4.68
508 512 5.402054 TTCTTATTATTGGTGCCCTGGAT 57.598 39.130 0.00 0.00 0.00 3.41
743 770 1.407437 GGAACCGAGGCAACAGATCAT 60.407 52.381 0.00 0.00 41.41 2.45
1053 3344 0.394192 CATCCTCGGCCTGCTTGATA 59.606 55.000 0.00 0.00 0.00 2.15
1075 7176 5.669477 GATGAAGAGGATCAGTTTACTGCT 58.331 41.667 5.00 0.00 43.46 4.24
1413 7518 0.597568 ACGATTTCACGGACGTACCA 59.402 50.000 0.00 0.00 38.90 3.25
1421 7529 2.029244 CCAATTCTCGACGATTTCACGG 59.971 50.000 0.00 0.00 37.61 4.94
1470 7592 9.987272 AAAAGAGGTCAATAATTTTCTTCAAGG 57.013 29.630 0.00 0.00 0.00 3.61
1492 7614 2.349532 GCGACCTGGAACGAAGAAAAAG 60.350 50.000 18.11 0.00 0.00 2.27
1575 7699 4.031652 CGTTTGTTTCTCTTTGTTTGCTGG 59.968 41.667 0.00 0.00 0.00 4.85
1600 7742 1.923909 AACCAGTACCTCCCCAGGC 60.924 63.158 0.00 0.00 45.05 4.85
1603 7745 0.838987 GACCAACCAGTACCTCCCCA 60.839 60.000 0.00 0.00 0.00 4.96
1623 7765 0.326264 GACCTCTGTGACATGGCCTT 59.674 55.000 3.32 0.00 0.00 4.35
1812 8019 0.798776 GACCAACAACTCGCTCATGG 59.201 55.000 0.00 0.00 0.00 3.66
1881 8088 4.402155 GGTTGACCAGATTTATCAATGCCA 59.598 41.667 0.00 0.00 34.98 4.92
1950 8157 2.095008 GGCAAGAGCTTTAGCAAGTTCC 60.095 50.000 4.33 0.00 40.30 3.62
2005 8212 6.430616 TCAGCATATTCAGACATGTCAAAACA 59.569 34.615 27.02 10.73 40.38 2.83
2105 8353 4.767478 AGGTGAGACATGATGATGAAGTG 58.233 43.478 0.00 0.00 33.36 3.16
2135 8387 6.879400 TCTTCTTCATAGCTTTAGGAAGTCC 58.121 40.000 9.94 0.00 38.54 3.85
2212 8464 3.279434 GGTTTGCCTTATCCATCTCGTT 58.721 45.455 0.00 0.00 0.00 3.85
2393 8648 3.811722 TCATGAGAAAATCACGTGCAC 57.188 42.857 11.67 6.82 41.91 4.57
2404 8659 4.574892 TCGCATACCTGTTTCATGAGAAA 58.425 39.130 0.00 0.00 41.26 2.52
2416 8671 4.730042 CGTTTGAATTGATTCGCATACCTG 59.270 41.667 0.00 0.00 39.62 4.00
2433 8688 3.404899 GACATTACAAGGGACCGTTTGA 58.595 45.455 12.75 0.00 0.00 2.69
2469 8733 8.752005 ACCTGCACAAACAAGTATTATATGAT 57.248 30.769 0.00 0.00 0.00 2.45
2565 8830 8.611654 ATTTTCAAAATTTCCCTCAGTTCATG 57.388 30.769 0.00 0.00 0.00 3.07
2657 8922 4.561735 TTCCGACAAAATGACTTCCAAC 57.438 40.909 0.00 0.00 0.00 3.77
2778 9043 6.488006 GGATGCATGGATTAACAAGTCATACT 59.512 38.462 2.46 0.00 0.00 2.12
2807 9072 2.224378 CCGTTCACCTATGAGCATCCAT 60.224 50.000 0.00 0.00 35.89 3.41
2866 9131 6.586082 ACCAACATATTTGAAAGAATTGTCGC 59.414 34.615 0.00 0.00 0.00 5.19
2922 9187 6.715264 TCTTATCGTCACTAGCATCTATGGAA 59.285 38.462 0.00 0.00 0.00 3.53
3043 9308 6.936335 TGCAAGTTCATCTTCTTTGTCATCTA 59.064 34.615 0.00 0.00 33.63 1.98
3050 9316 9.499585 CAAGTATATGCAAGTTCATCTTCTTTG 57.500 33.333 0.00 0.00 33.63 2.77
3079 9346 5.864474 TGCAAGTCTTTTACTTTTGCGAAAA 59.136 32.000 0.00 0.00 46.61 2.29
3095 9362 8.198109 CCCGCTAATATAAGTATATGCAAGTCT 58.802 37.037 0.00 0.00 0.00 3.24
3121 9389 4.572389 CACTAACAACCCACATATCAGCTC 59.428 45.833 0.00 0.00 0.00 4.09
3131 9399 5.048991 CCTGTGTAAATCACTAACAACCCAC 60.049 44.000 0.00 0.00 46.27 4.61
3151 9419 7.120726 GCAAAGTCCTGTTACATATAAACCTGT 59.879 37.037 0.00 0.00 0.00 4.00
3169 9438 4.192317 ACGATTGGAAGATAGCAAAGTCC 58.808 43.478 0.00 0.00 0.00 3.85
3207 9476 3.860641 TGCAAGCAATCGTTCAGATCTA 58.139 40.909 0.00 0.00 38.98 1.98
3213 9482 0.597072 TGCATGCAAGCAATCGTTCA 59.403 45.000 20.30 0.00 42.46 3.18
3251 9520 0.372334 CACGCATACAAGTTACCGCC 59.628 55.000 0.00 0.00 0.00 6.13
3258 9527 1.674322 GGCACCCACGCATACAAGT 60.674 57.895 0.00 0.00 0.00 3.16
3275 9544 8.265055 TCTAATTAAACAATGACTACTCCTGGG 58.735 37.037 0.00 0.00 0.00 4.45
3286 9555 9.487442 AATTAGGCCCTTCTAATTAAACAATGA 57.513 29.630 0.00 0.00 43.86 2.57
3290 9559 9.930158 ATGTAATTAGGCCCTTCTAATTAAACA 57.070 29.630 13.62 12.08 45.72 2.83
3330 9599 2.362077 GGCTGACACCATCACTTTTGTT 59.638 45.455 0.00 0.00 32.37 2.83
3331 9600 1.956477 GGCTGACACCATCACTTTTGT 59.044 47.619 0.00 0.00 32.37 2.83
3332 9601 2.233271 AGGCTGACACCATCACTTTTG 58.767 47.619 0.00 0.00 32.37 2.44
3343 9612 2.206576 AAGGGAATCAAGGCTGACAC 57.793 50.000 0.00 0.00 33.30 3.67
3398 9667 4.252073 CAATTTTTCAATCGGGCCAATGA 58.748 39.130 4.39 0.98 0.00 2.57
3400 9669 4.284829 ACAATTTTTCAATCGGGCCAAT 57.715 36.364 4.39 0.00 0.00 3.16
3447 9716 8.641498 ACATGTGATCTAATTTTCAAGGTCTT 57.359 30.769 0.00 0.00 0.00 3.01
3455 9724 9.793252 AACATAGCAACATGTGATCTAATTTTC 57.207 29.630 0.00 0.00 39.10 2.29
3460 9729 6.816140 TCGAAACATAGCAACATGTGATCTAA 59.184 34.615 0.00 0.00 39.10 2.10
3467 9736 4.937620 AGATGTCGAAACATAGCAACATGT 59.062 37.500 0.00 0.00 46.20 3.21
3498 9772 6.345096 AGCACAAGCATGGTAAGTTTTTAT 57.655 33.333 0.00 0.00 45.49 1.40
3562 9836 5.644636 TGTGACCGGTAATTTCTGGATAAAC 59.355 40.000 16.22 8.80 37.31 2.01
3568 9842 4.839668 TTTTGTGACCGGTAATTTCTGG 57.160 40.909 7.34 8.32 39.57 3.86
3579 9853 2.738135 GTGGAACCATTTTTGTGACCG 58.262 47.619 0.00 0.00 0.00 4.79
3593 9867 3.445805 TGTGGAAAGAAGTTTGGTGGAAC 59.554 43.478 0.00 0.00 0.00 3.62
3594 9868 3.702792 TGTGGAAAGAAGTTTGGTGGAA 58.297 40.909 0.00 0.00 0.00 3.53
3595 9869 3.374042 TGTGGAAAGAAGTTTGGTGGA 57.626 42.857 0.00 0.00 0.00 4.02
3596 9870 3.799917 GCATGTGGAAAGAAGTTTGGTGG 60.800 47.826 0.00 0.00 0.00 4.61
3597 9871 3.181477 TGCATGTGGAAAGAAGTTTGGTG 60.181 43.478 0.00 0.00 0.00 4.17
3598 9872 3.030291 TGCATGTGGAAAGAAGTTTGGT 58.970 40.909 0.00 0.00 0.00 3.67
3599 9873 3.181477 TGTGCATGTGGAAAGAAGTTTGG 60.181 43.478 0.00 0.00 0.00 3.28
3600 9874 4.044336 TGTGCATGTGGAAAGAAGTTTG 57.956 40.909 0.00 0.00 0.00 2.93
3601 9875 4.624015 CATGTGCATGTGGAAAGAAGTTT 58.376 39.130 4.13 0.00 34.23 2.66
3602 9876 3.553508 GCATGTGCATGTGGAAAGAAGTT 60.554 43.478 12.96 0.00 40.80 2.66
3604 9878 2.602878 GCATGTGCATGTGGAAAGAAG 58.397 47.619 12.96 0.00 40.80 2.85
3624 9900 2.320745 TGTCCTCTAGTGCATGCATG 57.679 50.000 25.64 22.70 0.00 4.06
3649 9926 8.363390 TGGAAGCATCTAGAATGACATTACTAG 58.637 37.037 18.80 18.80 35.19 2.57
3650 9927 8.250143 TGGAAGCATCTAGAATGACATTACTA 57.750 34.615 0.00 4.34 0.00 1.82
3652 9929 7.976135 ATGGAAGCATCTAGAATGACATTAC 57.024 36.000 0.00 0.00 0.00 1.89
3653 9930 7.663081 GGAATGGAAGCATCTAGAATGACATTA 59.337 37.037 0.00 0.00 0.00 1.90
3654 9931 6.489361 GGAATGGAAGCATCTAGAATGACATT 59.511 38.462 0.00 0.00 0.00 2.71
3655 9932 6.002704 GGAATGGAAGCATCTAGAATGACAT 58.997 40.000 0.00 0.00 0.00 3.06
3656 9933 5.104402 TGGAATGGAAGCATCTAGAATGACA 60.104 40.000 0.00 0.00 0.00 3.58
3657 9934 5.371526 TGGAATGGAAGCATCTAGAATGAC 58.628 41.667 0.00 0.00 0.00 3.06
3658 9935 5.635278 TGGAATGGAAGCATCTAGAATGA 57.365 39.130 0.00 0.00 0.00 2.57
3665 9942 6.363167 TGAAATTTTGGAATGGAAGCATCT 57.637 33.333 0.00 0.00 0.00 2.90
3669 9946 7.873910 TCATTTTGAAATTTTGGAATGGAAGC 58.126 30.769 15.35 0.00 0.00 3.86
3687 9965 7.096640 CGGCGGTTTAGCTTATAAATCATTTTG 60.097 37.037 0.00 0.00 37.29 2.44
3694 9972 3.812262 ACCGGCGGTTTAGCTTATAAAT 58.188 40.909 28.83 0.00 37.29 1.40
3695 9973 3.264998 ACCGGCGGTTTAGCTTATAAA 57.735 42.857 28.83 0.00 37.29 1.40
3701 9979 0.322187 ATTGAACCGGCGGTTTAGCT 60.322 50.000 41.01 25.70 46.95 3.32
3703 9981 1.444836 TGATTGAACCGGCGGTTTAG 58.555 50.000 41.01 12.36 46.95 1.85
3708 9986 1.000717 ACTTTTTGATTGAACCGGCGG 60.001 47.619 27.06 27.06 0.00 6.13
3711 9989 3.619233 ACGACTTTTTGATTGAACCGG 57.381 42.857 0.00 0.00 0.00 5.28
3716 9994 9.574458 TTTATGTGAAAACGACTTTTTGATTGA 57.426 25.926 0.00 0.00 37.54 2.57
3727 10005 6.236505 GCGACGTATTTTTATGTGAAAACGAC 60.237 38.462 0.00 0.00 31.88 4.34
3745 10023 1.915614 GAAGGTCTCACCGCGACGTA 61.916 60.000 8.23 0.00 44.90 3.57
3746 10024 3.264866 GAAGGTCTCACCGCGACGT 62.265 63.158 8.23 0.00 44.90 4.34
3748 10026 0.599204 TTTGAAGGTCTCACCGCGAC 60.599 55.000 8.23 0.00 44.90 5.19
3749 10027 0.105224 TTTTGAAGGTCTCACCGCGA 59.895 50.000 8.23 0.00 44.90 5.87
3750 10028 0.234884 GTTTTGAAGGTCTCACCGCG 59.765 55.000 0.00 0.00 44.90 6.46
3751 10029 1.594331 AGTTTTGAAGGTCTCACCGC 58.406 50.000 0.00 0.00 44.90 5.68
3754 10033 6.231211 TGGAATCTAGTTTTGAAGGTCTCAC 58.769 40.000 0.00 0.00 32.21 3.51
3775 10054 8.690203 AAATCGTTGGAACATATCAATATGGA 57.310 30.769 13.18 1.64 43.38 3.41
3805 10084 2.827921 CAGGCCTGGTAGCTTTTTGATT 59.172 45.455 26.14 0.00 0.00 2.57
3806 10085 2.450476 CAGGCCTGGTAGCTTTTTGAT 58.550 47.619 26.14 0.00 0.00 2.57
3807 10086 1.547675 CCAGGCCTGGTAGCTTTTTGA 60.548 52.381 39.52 0.00 45.53 2.69
3842 10128 2.169832 AACATACGCACAGCAGAACT 57.830 45.000 0.00 0.00 0.00 3.01
3843 10129 2.734606 TGTAACATACGCACAGCAGAAC 59.265 45.455 0.00 0.00 0.00 3.01
3844 10130 3.033368 TGTAACATACGCACAGCAGAA 57.967 42.857 0.00 0.00 0.00 3.02
3847 10134 2.159585 GCATTGTAACATACGCACAGCA 60.160 45.455 0.00 0.00 0.00 4.41
3849 10136 5.657470 ATAGCATTGTAACATACGCACAG 57.343 39.130 0.00 0.00 0.00 3.66
3854 10141 9.745323 CATGTATGAATAGCATTGTAACATACG 57.255 33.333 0.00 0.00 40.39 3.06
3857 10144 9.565090 ACTCATGTATGAATAGCATTGTAACAT 57.435 29.630 0.00 0.00 38.44 2.71
3906 10193 5.717654 GGTGGTAATTATCTGACCCCAAAAA 59.282 40.000 0.00 0.00 31.80 1.94
3907 10194 5.265989 GGTGGTAATTATCTGACCCCAAAA 58.734 41.667 0.00 0.00 31.80 2.44
3908 10195 4.325501 GGGTGGTAATTATCTGACCCCAAA 60.326 45.833 11.66 0.00 37.63 3.28
3909 10196 3.203487 GGGTGGTAATTATCTGACCCCAA 59.797 47.826 11.66 0.00 37.63 4.12
3910 10197 2.781174 GGGTGGTAATTATCTGACCCCA 59.219 50.000 11.66 0.00 37.63 4.96
3911 10198 3.503800 GGGTGGTAATTATCTGACCCC 57.496 52.381 11.66 5.60 37.63 4.95
3912 10199 3.053826 AGGGGTGGTAATTATCTGACCC 58.946 50.000 13.64 13.64 42.13 4.46
3913 10200 3.181443 CCAGGGGTGGTAATTATCTGACC 60.181 52.174 0.00 0.00 0.00 4.02
3914 10201 3.181443 CCCAGGGGTGGTAATTATCTGAC 60.181 52.174 0.00 0.00 0.00 3.51
3915 10202 3.053077 CCCAGGGGTGGTAATTATCTGA 58.947 50.000 0.00 0.00 0.00 3.27
3916 10203 2.489073 GCCCAGGGGTGGTAATTATCTG 60.489 54.545 7.91 0.00 37.65 2.90
3917 10204 1.780919 GCCCAGGGGTGGTAATTATCT 59.219 52.381 7.91 0.00 37.65 1.98
3918 10205 1.780919 AGCCCAGGGGTGGTAATTATC 59.219 52.381 10.29 0.00 37.65 1.75
3919 10206 1.921352 AGCCCAGGGGTGGTAATTAT 58.079 50.000 10.29 0.00 37.65 1.28
3920 10207 2.590793 TAGCCCAGGGGTGGTAATTA 57.409 50.000 21.56 0.00 37.65 1.40
3921 10208 1.569072 CTTAGCCCAGGGGTGGTAATT 59.431 52.381 21.56 0.00 37.65 1.40
3922 10209 1.222567 CTTAGCCCAGGGGTGGTAAT 58.777 55.000 21.56 0.00 37.65 1.89
3923 10210 0.178855 ACTTAGCCCAGGGGTGGTAA 60.179 55.000 21.56 5.80 37.65 2.85
3924 10211 0.717801 TACTTAGCCCAGGGGTGGTA 59.282 55.000 21.56 18.57 37.65 3.25
3925 10212 0.178855 TTACTTAGCCCAGGGGTGGT 60.179 55.000 21.56 19.54 37.65 4.16
3926 10213 0.546598 CTTACTTAGCCCAGGGGTGG 59.453 60.000 21.56 14.86 37.65 4.61
3927 10214 1.286248 ACTTACTTAGCCCAGGGGTG 58.714 55.000 21.56 6.98 37.65 4.61
3928 10215 2.842496 GTTACTTACTTAGCCCAGGGGT 59.158 50.000 16.46 16.46 37.65 4.95
3929 10216 2.172082 GGTTACTTACTTAGCCCAGGGG 59.828 54.545 7.91 3.48 38.57 4.79
3930 10217 2.841881 TGGTTACTTACTTAGCCCAGGG 59.158 50.000 0.00 0.00 0.00 4.45
3931 10218 3.681874 GCTGGTTACTTACTTAGCCCAGG 60.682 52.174 0.00 0.00 37.72 4.45
3932 10219 3.197983 AGCTGGTTACTTACTTAGCCCAG 59.802 47.826 0.00 0.00 39.10 4.45
3933 10220 3.178865 AGCTGGTTACTTACTTAGCCCA 58.821 45.455 0.00 0.00 37.52 5.36
3934 10221 3.908643 AGCTGGTTACTTACTTAGCCC 57.091 47.619 0.00 0.00 37.52 5.19
3935 10222 5.001874 ACAAAGCTGGTTACTTACTTAGCC 58.998 41.667 0.00 0.00 37.52 3.93
3936 10223 6.555812 AACAAAGCTGGTTACTTACTTAGC 57.444 37.500 2.39 0.00 37.26 3.09
3937 10224 8.175716 GCATAACAAAGCTGGTTACTTACTTAG 58.824 37.037 12.04 0.00 33.89 2.18
3938 10225 7.662258 TGCATAACAAAGCTGGTTACTTACTTA 59.338 33.333 12.04 0.00 33.89 2.24
3939 10226 6.488683 TGCATAACAAAGCTGGTTACTTACTT 59.511 34.615 12.04 0.00 33.89 2.24
3940 10227 6.001460 TGCATAACAAAGCTGGTTACTTACT 58.999 36.000 12.04 0.00 33.89 2.24
3941 10228 6.249035 TGCATAACAAAGCTGGTTACTTAC 57.751 37.500 12.04 4.92 33.89 2.34
3942 10229 6.884295 AGATGCATAACAAAGCTGGTTACTTA 59.116 34.615 12.04 4.11 33.89 2.24
3943 10230 5.711976 AGATGCATAACAAAGCTGGTTACTT 59.288 36.000 12.04 2.01 33.89 2.24
3944 10231 5.256474 AGATGCATAACAAAGCTGGTTACT 58.744 37.500 12.04 3.99 33.89 2.24
3945 10232 5.567138 AGATGCATAACAAAGCTGGTTAC 57.433 39.130 12.04 3.75 33.89 2.50
3946 10233 7.880160 AATAGATGCATAACAAAGCTGGTTA 57.120 32.000 12.15 12.15 35.40 2.85
3947 10234 6.780457 AATAGATGCATAACAAAGCTGGTT 57.220 33.333 0.00 8.82 0.00 3.67
3948 10235 6.263168 GGTAATAGATGCATAACAAAGCTGGT 59.737 38.462 0.00 0.00 0.00 4.00
3949 10236 6.262944 TGGTAATAGATGCATAACAAAGCTGG 59.737 38.462 0.00 0.00 0.00 4.85
3950 10237 7.263100 TGGTAATAGATGCATAACAAAGCTG 57.737 36.000 0.00 0.00 0.00 4.24
3951 10238 7.522725 GCATGGTAATAGATGCATAACAAAGCT 60.523 37.037 0.00 0.00 43.75 3.74
3952 10239 6.583806 GCATGGTAATAGATGCATAACAAAGC 59.416 38.462 0.00 0.00 43.75 3.51
3953 10240 6.798476 CGCATGGTAATAGATGCATAACAAAG 59.202 38.462 0.00 0.00 44.39 2.77
3954 10241 6.667370 CGCATGGTAATAGATGCATAACAAA 58.333 36.000 0.00 0.00 44.39 2.83
3955 10242 5.334802 GCGCATGGTAATAGATGCATAACAA 60.335 40.000 0.30 0.00 44.39 2.83
3956 10243 4.154015 GCGCATGGTAATAGATGCATAACA 59.846 41.667 0.30 0.00 44.39 2.41
3957 10244 4.154015 TGCGCATGGTAATAGATGCATAAC 59.846 41.667 5.66 0.00 44.39 1.89
3958 10245 4.322567 TGCGCATGGTAATAGATGCATAA 58.677 39.130 5.66 0.00 44.39 1.90
3959 10246 3.936564 TGCGCATGGTAATAGATGCATA 58.063 40.909 5.66 0.00 44.39 3.14
3960 10247 2.781923 TGCGCATGGTAATAGATGCAT 58.218 42.857 5.66 0.00 44.39 3.96
3961 10248 2.252976 TGCGCATGGTAATAGATGCA 57.747 45.000 5.66 0.00 44.39 3.96
3962 10249 2.743664 TCATGCGCATGGTAATAGATGC 59.256 45.455 41.21 0.00 41.37 3.91
3963 10250 3.999001 ACTCATGCGCATGGTAATAGATG 59.001 43.478 41.21 20.38 39.24 2.90
3964 10251 4.277515 ACTCATGCGCATGGTAATAGAT 57.722 40.909 41.21 21.73 39.24 1.98
3965 10252 3.751479 ACTCATGCGCATGGTAATAGA 57.249 42.857 41.21 24.08 39.24 1.98
3966 10253 4.152402 GGTAACTCATGCGCATGGTAATAG 59.848 45.833 41.21 33.03 39.24 1.73
3967 10254 4.062293 GGTAACTCATGCGCATGGTAATA 58.938 43.478 41.21 27.65 39.24 0.98
3968 10255 2.878406 GGTAACTCATGCGCATGGTAAT 59.122 45.455 41.21 28.53 39.24 1.89
3969 10256 2.285083 GGTAACTCATGCGCATGGTAA 58.715 47.619 41.21 26.08 39.24 2.85
3970 10257 1.804746 CGGTAACTCATGCGCATGGTA 60.805 52.381 41.21 29.19 39.24 3.25
3971 10258 1.089481 CGGTAACTCATGCGCATGGT 61.089 55.000 41.21 34.03 39.24 3.55
3972 10259 0.809636 TCGGTAACTCATGCGCATGG 60.810 55.000 41.21 33.46 39.24 3.66
3973 10260 0.578683 CTCGGTAACTCATGCGCATG 59.421 55.000 38.48 38.48 40.09 4.06
3974 10261 0.530650 CCTCGGTAACTCATGCGCAT 60.531 55.000 19.28 19.28 0.00 4.73
3975 10262 1.153647 CCTCGGTAACTCATGCGCA 60.154 57.895 14.96 14.96 0.00 6.09
3976 10263 1.883084 CCCTCGGTAACTCATGCGC 60.883 63.158 0.00 0.00 0.00 6.09
3977 10264 1.227263 CCCCTCGGTAACTCATGCG 60.227 63.158 0.00 0.00 0.00 4.73
3978 10265 0.462047 CACCCCTCGGTAACTCATGC 60.462 60.000 0.00 0.00 42.04 4.06
3979 10266 0.902531 ACACCCCTCGGTAACTCATG 59.097 55.000 0.00 0.00 42.04 3.07
3980 10267 1.652947 AACACCCCTCGGTAACTCAT 58.347 50.000 0.00 0.00 42.04 2.90
3981 10268 1.426751 AAACACCCCTCGGTAACTCA 58.573 50.000 0.00 0.00 42.04 3.41
3982 10269 2.556144 AAAACACCCCTCGGTAACTC 57.444 50.000 0.00 0.00 42.04 3.01
3983 10270 4.436113 TTAAAAACACCCCTCGGTAACT 57.564 40.909 0.00 0.00 42.04 2.24
3984 10271 5.710513 ATTTAAAAACACCCCTCGGTAAC 57.289 39.130 0.00 0.00 42.04 2.50
3985 10272 7.830099 TTTATTTAAAAACACCCCTCGGTAA 57.170 32.000 0.00 0.00 42.04 2.85
3986 10273 7.668886 TGATTTATTTAAAAACACCCCTCGGTA 59.331 33.333 0.00 0.00 42.04 4.02
3987 10274 6.494146 TGATTTATTTAAAAACACCCCTCGGT 59.506 34.615 0.00 0.00 46.31 4.69
3988 10275 6.926313 TGATTTATTTAAAAACACCCCTCGG 58.074 36.000 0.00 0.00 0.00 4.63
3989 10276 8.996024 ATTGATTTATTTAAAAACACCCCTCG 57.004 30.769 0.00 0.00 0.00 4.63
3992 10279 9.386010 GGGTATTGATTTATTTAAAAACACCCC 57.614 33.333 3.96 0.00 0.00 4.95
3993 10280 9.945904 TGGGTATTGATTTATTTAAAAACACCC 57.054 29.630 7.36 7.36 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.