Multiple sequence alignment - TraesCS7D01G045900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G045900 chr7D 100.000 5949 0 0 807 6755 23490373 23496321 0.000000e+00 10986.0
1 TraesCS7D01G045900 chr7D 100.000 478 0 0 1 478 23489567 23490044 0.000000e+00 883.0
2 TraesCS7D01G045900 chr7A 95.208 5405 128 38 807 6164 24586496 24591816 0.000000e+00 8425.0
3 TraesCS7D01G045900 chr7A 88.817 465 47 5 1 461 309675964 309676427 3.540000e-157 566.0
4 TraesCS7D01G045900 chr7A 91.707 410 29 5 6350 6755 24592150 24592558 1.270000e-156 564.0
5 TraesCS7D01G045900 chr4A 94.320 2588 92 25 3612 6164 708325429 708322862 0.000000e+00 3914.0
6 TraesCS7D01G045900 chr4A 92.241 464 28 5 1 461 324655923 324655465 0.000000e+00 651.0
7 TraesCS7D01G045900 chr4A 80.406 837 118 22 4351 5152 706207155 706206330 4.510000e-166 595.0
8 TraesCS7D01G045900 chr4A 88.377 456 30 10 6304 6755 708322568 708322132 1.670000e-145 527.0
9 TraesCS7D01G045900 chr4A 80.115 523 67 23 5258 5771 706206243 706205749 8.330000e-94 355.0
10 TraesCS7D01G045900 chr2B 89.417 463 43 4 2 461 682845533 682845074 4.540000e-161 579.0
11 TraesCS7D01G045900 chr2B 89.846 325 31 1 1089 1411 733273017 733273341 3.770000e-112 416.0
12 TraesCS7D01G045900 chr2B 83.153 463 61 12 1917 2377 631365316 631364869 2.270000e-109 407.0
13 TraesCS7D01G045900 chr2B 89.264 326 30 2 1089 1412 326723662 326723984 2.930000e-108 403.0
14 TraesCS7D01G045900 chr2B 80.556 396 37 18 2380 2763 631347066 631346699 1.120000e-67 268.0
15 TraesCS7D01G045900 chr2B 91.667 60 5 0 1857 1916 631365396 631365337 4.340000e-12 84.2
16 TraesCS7D01G045900 chr3D 89.247 465 40 9 1 461 378773256 378772798 2.110000e-159 573.0
17 TraesCS7D01G045900 chr5B 89.056 466 42 8 1 461 473912207 473912668 2.730000e-158 569.0
18 TraesCS7D01G045900 chr5B 89.634 328 30 2 1089 1412 23521252 23520925 1.360000e-111 414.0
19 TraesCS7D01G045900 chr5B 85.167 209 30 1 1953 2160 140948819 140948611 5.310000e-51 213.0
20 TraesCS7D01G045900 chr2A 89.083 458 41 7 1 454 19077331 19077783 1.650000e-155 560.0
21 TraesCS7D01G045900 chr2A 90.000 160 16 0 1885 2044 19839434 19839593 2.470000e-49 207.0
22 TraesCS7D01G045900 chr6D 88.602 465 46 6 1 461 57791898 57791437 5.920000e-155 558.0
23 TraesCS7D01G045900 chr6D 85.321 218 31 1 1944 2160 306006135 306006352 2.450000e-54 224.0
24 TraesCS7D01G045900 chr1A 88.769 463 42 7 3 461 590991236 590990780 5.920000e-155 558.0
25 TraesCS7D01G045900 chr1A 95.082 61 3 0 1885 1945 590829390 590829450 5.580000e-16 97.1
26 TraesCS7D01G045900 chr7B 87.527 465 51 5 1 461 436090512 436090051 1.290000e-146 531.0
27 TraesCS7D01G045900 chr7B 90.343 321 29 1 1089 1407 318149436 318149756 2.910000e-113 420.0
28 TraesCS7D01G045900 chr3B 89.908 327 29 2 1089 1411 11383086 11383412 1.050000e-112 418.0
29 TraesCS7D01G045900 chr3B 85.646 209 29 1 1953 2160 363045773 363045565 1.140000e-52 219.0
30 TraesCS7D01G045900 chr5D 89.297 327 32 1 1089 1412 262396914 262396588 2.270000e-109 407.0
31 TraesCS7D01G045900 chr6B 88.650 326 35 1 1089 1412 248546198 248546523 4.910000e-106 396.0
32 TraesCS7D01G045900 chr6B 80.529 416 51 14 6244 6650 643395425 643395031 6.630000e-75 292.0
33 TraesCS7D01G045900 chr4B 88.415 328 34 2 1089 1412 658573528 658573855 6.350000e-105 392.0
34 TraesCS7D01G045900 chr4B 95.082 61 3 0 1885 1945 169934820 169934880 5.580000e-16 97.1
35 TraesCS7D01G045900 chr1B 86.124 209 28 1 1953 2160 310102332 310102124 2.450000e-54 224.0
36 TraesCS7D01G045900 chr3A 93.443 61 4 0 1885 1945 22144517 22144577 2.590000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G045900 chr7D 23489567 23496321 6754 False 5934.5 10986 100.0000 1 6755 2 chr7D.!!$F1 6754
1 TraesCS7D01G045900 chr7A 24586496 24592558 6062 False 4494.5 8425 93.4575 807 6755 2 chr7A.!!$F2 5948
2 TraesCS7D01G045900 chr4A 708322132 708325429 3297 True 2220.5 3914 91.3485 3612 6755 2 chr4A.!!$R3 3143
3 TraesCS7D01G045900 chr4A 706205749 706207155 1406 True 475.0 595 80.2605 4351 5771 2 chr4A.!!$R2 1420
4 TraesCS7D01G045900 chr2B 631364869 631365396 527 True 245.6 407 87.4100 1857 2377 2 chr2B.!!$R3 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 460 0.034896 AGTGGTAAAGGAGGCGTGTG 59.965 55.000 0.00 0.0 0.00 3.82 F
462 463 0.035739 GGTAAAGGAGGCGTGTGGAA 59.964 55.000 0.00 0.0 0.00 3.53 F
472 473 0.234884 GCGTGTGGAAAAAGAGACCG 59.765 55.000 0.00 0.0 0.00 4.79 F
1130 1131 0.401738 TTGGGTGAGCTTTCCCTGAG 59.598 55.000 22.11 0.0 43.74 3.35 F
1257 1258 1.538204 CGCGGTATGGCTCAGTACAAT 60.538 52.381 0.00 0.0 0.00 2.71 F
1393 1394 2.531522 AAATGTGGTGGCAAAAGCTC 57.468 45.000 0.00 0.0 0.00 4.09 F
3343 3383 2.846193 TGTTAGTTCTTCCACCAGCAC 58.154 47.619 0.00 0.0 0.00 4.40 F
3589 3630 0.331278 TCTGTACCAAGCCCCCAATG 59.669 55.000 0.00 0.0 0.00 2.82 F
4966 5046 2.484889 GCAAACTATCCATCGGTCTCC 58.515 52.381 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2423 2451 1.255667 ATTCCGCCAGTACGACCAGT 61.256 55.000 0.0 0.00 34.06 4.00 R
2478 2506 9.292195 CTGGGACCTAAAATAAAAACAGTAGAA 57.708 33.333 0.0 0.00 0.00 2.10 R
2566 2595 7.952671 TCCAGACGATATAACTATTTCTGCTT 58.047 34.615 0.0 0.00 31.98 3.91 R
2906 2946 3.181483 ACAGCAAACAAAGAAAGCAGAGG 60.181 43.478 0.0 0.00 0.00 3.69 R
2914 2954 4.462483 AGGAACTTCACAGCAAACAAAGAA 59.538 37.500 0.0 0.00 27.25 2.52 R
3407 3447 2.440627 ACCATCTGCCAGCATTAGATGA 59.559 45.455 17.3 1.61 46.71 2.92 R
4554 4602 1.804151 GCGCACAGAGGTACAATTTCA 59.196 47.619 0.3 0.00 0.00 2.69 R
5037 5124 4.213482 ACGAGCAAAAGATAAACAGTCCAC 59.787 41.667 0.0 0.00 0.00 4.02 R
6489 6831 0.318441 GCATCCTGCTCCTATACGCA 59.682 55.000 0.0 0.00 40.96 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 9.797556 AACGGGAAATTAAGAAAATATACTTGC 57.202 29.630 0.00 0.00 0.00 4.01
70 71 8.410912 ACGGGAAATTAAGAAAATATACTTGCC 58.589 33.333 0.00 0.00 0.00 4.52
71 72 8.410141 CGGGAAATTAAGAAAATATACTTGCCA 58.590 33.333 0.00 0.00 0.00 4.92
78 79 7.716799 AAGAAAATATACTTGCCATGAACCA 57.283 32.000 0.00 0.00 0.00 3.67
79 80 7.902920 AGAAAATATACTTGCCATGAACCAT 57.097 32.000 0.00 0.00 0.00 3.55
80 81 8.995027 AGAAAATATACTTGCCATGAACCATA 57.005 30.769 0.00 0.00 0.00 2.74
81 82 9.420118 AGAAAATATACTTGCCATGAACCATAA 57.580 29.630 0.00 0.00 0.00 1.90
83 84 9.816354 AAAATATACTTGCCATGAACCATAAAC 57.184 29.630 0.00 0.00 0.00 2.01
84 85 8.766994 AATATACTTGCCATGAACCATAAACT 57.233 30.769 0.00 0.00 0.00 2.66
85 86 9.860650 AATATACTTGCCATGAACCATAAACTA 57.139 29.630 0.00 0.00 0.00 2.24
86 87 9.860650 ATATACTTGCCATGAACCATAAACTAA 57.139 29.630 0.00 0.00 0.00 2.24
87 88 6.909550 ACTTGCCATGAACCATAAACTAAA 57.090 33.333 0.00 0.00 0.00 1.85
88 89 7.296628 ACTTGCCATGAACCATAAACTAAAA 57.703 32.000 0.00 0.00 0.00 1.52
89 90 7.906327 ACTTGCCATGAACCATAAACTAAAAT 58.094 30.769 0.00 0.00 0.00 1.82
90 91 8.374743 ACTTGCCATGAACCATAAACTAAAATT 58.625 29.630 0.00 0.00 0.00 1.82
91 92 8.545229 TTGCCATGAACCATAAACTAAAATTG 57.455 30.769 0.00 0.00 0.00 2.32
92 93 6.593382 TGCCATGAACCATAAACTAAAATTGC 59.407 34.615 0.00 0.00 0.00 3.56
93 94 6.037062 GCCATGAACCATAAACTAAAATTGCC 59.963 38.462 0.00 0.00 0.00 4.52
94 95 7.102346 CCATGAACCATAAACTAAAATTGCCA 58.898 34.615 0.00 0.00 0.00 4.92
95 96 7.769970 CCATGAACCATAAACTAAAATTGCCAT 59.230 33.333 0.00 0.00 0.00 4.40
96 97 8.605746 CATGAACCATAAACTAAAATTGCCATG 58.394 33.333 0.00 0.00 0.00 3.66
97 98 7.901029 TGAACCATAAACTAAAATTGCCATGA 58.099 30.769 0.00 0.00 0.00 3.07
98 99 8.538701 TGAACCATAAACTAAAATTGCCATGAT 58.461 29.630 0.00 0.00 0.00 2.45
99 100 8.721019 AACCATAAACTAAAATTGCCATGATG 57.279 30.769 0.00 0.00 0.00 3.07
100 101 6.762661 ACCATAAACTAAAATTGCCATGATGC 59.237 34.615 0.00 0.00 0.00 3.91
101 102 6.762187 CCATAAACTAAAATTGCCATGATGCA 59.238 34.615 0.00 0.00 40.07 3.96
102 103 7.442969 CCATAAACTAAAATTGCCATGATGCAT 59.557 33.333 0.00 0.00 41.70 3.96
103 104 6.671614 AAACTAAAATTGCCATGATGCATG 57.328 33.333 2.46 0.00 41.70 4.06
104 105 4.124238 ACTAAAATTGCCATGATGCATGC 58.876 39.130 11.82 11.82 41.70 4.06
105 106 2.700722 AAATTGCCATGATGCATGCA 57.299 40.000 25.04 25.04 41.70 3.96
106 107 1.948104 AATTGCCATGATGCATGCAC 58.052 45.000 25.37 17.16 41.70 4.57
107 108 1.119684 ATTGCCATGATGCATGCACT 58.880 45.000 25.37 12.53 41.70 4.40
108 109 0.899019 TTGCCATGATGCATGCACTT 59.101 45.000 25.37 8.32 41.70 3.16
109 110 1.765230 TGCCATGATGCATGCACTTA 58.235 45.000 25.37 12.75 40.20 2.24
110 111 2.100989 TGCCATGATGCATGCACTTAA 58.899 42.857 25.37 9.28 40.20 1.85
111 112 2.496470 TGCCATGATGCATGCACTTAAA 59.504 40.909 25.37 7.31 40.20 1.52
112 113 3.056035 TGCCATGATGCATGCACTTAAAA 60.056 39.130 25.37 5.38 40.20 1.52
113 114 4.124238 GCCATGATGCATGCACTTAAAAT 58.876 39.130 25.37 4.65 40.20 1.82
114 115 4.573201 GCCATGATGCATGCACTTAAAATT 59.427 37.500 25.37 3.73 40.20 1.82
115 116 5.503357 GCCATGATGCATGCACTTAAAATTG 60.503 40.000 25.37 11.62 40.20 2.32
116 117 5.498159 CATGATGCATGCACTTAAAATTGC 58.502 37.500 25.37 3.08 35.02 3.56
117 118 3.933955 TGATGCATGCACTTAAAATTGCC 59.066 39.130 25.37 1.36 38.00 4.52
118 119 3.397849 TGCATGCACTTAAAATTGCCA 57.602 38.095 18.46 0.00 38.00 4.92
119 120 3.940319 TGCATGCACTTAAAATTGCCAT 58.060 36.364 18.46 0.00 38.00 4.40
120 121 3.685272 TGCATGCACTTAAAATTGCCATG 59.315 39.130 18.46 7.47 38.00 3.66
121 122 3.064271 GCATGCACTTAAAATTGCCATGG 59.936 43.478 14.21 7.63 38.00 3.66
122 123 4.255301 CATGCACTTAAAATTGCCATGGT 58.745 39.130 14.67 0.00 38.00 3.55
123 124 4.348863 TGCACTTAAAATTGCCATGGTT 57.651 36.364 14.67 1.29 38.00 3.67
124 125 4.314121 TGCACTTAAAATTGCCATGGTTC 58.686 39.130 14.67 0.00 38.00 3.62
125 126 4.202295 TGCACTTAAAATTGCCATGGTTCA 60.202 37.500 14.67 0.00 38.00 3.18
126 127 4.937015 GCACTTAAAATTGCCATGGTTCAT 59.063 37.500 14.67 0.00 32.21 2.57
127 128 6.105333 GCACTTAAAATTGCCATGGTTCATA 58.895 36.000 14.67 0.00 32.21 2.15
128 129 6.035975 GCACTTAAAATTGCCATGGTTCATAC 59.964 38.462 14.67 0.00 32.21 2.39
129 130 7.095910 CACTTAAAATTGCCATGGTTCATACA 58.904 34.615 14.67 0.00 0.00 2.29
130 131 7.601886 CACTTAAAATTGCCATGGTTCATACAA 59.398 33.333 14.67 8.14 0.00 2.41
131 132 8.153550 ACTTAAAATTGCCATGGTTCATACAAA 58.846 29.630 14.67 0.00 0.00 2.83
132 133 8.908786 TTAAAATTGCCATGGTTCATACAAAA 57.091 26.923 14.67 0.00 0.00 2.44
133 134 7.814264 AAAATTGCCATGGTTCATACAAAAA 57.186 28.000 14.67 0.00 0.00 1.94
158 159 9.927668 AAATAATTTTCATGGTCAAAGTACTGG 57.072 29.630 0.00 0.00 0.00 4.00
159 160 8.877864 ATAATTTTCATGGTCAAAGTACTGGA 57.122 30.769 0.00 0.00 0.00 3.86
160 161 6.824305 ATTTTCATGGTCAAAGTACTGGAG 57.176 37.500 0.00 0.00 0.00 3.86
161 162 4.974645 TTCATGGTCAAAGTACTGGAGT 57.025 40.909 0.00 0.00 0.00 3.85
162 163 4.974645 TCATGGTCAAAGTACTGGAGTT 57.025 40.909 0.00 0.00 0.00 3.01
163 164 4.641396 TCATGGTCAAAGTACTGGAGTTG 58.359 43.478 0.00 0.00 0.00 3.16
164 165 2.846193 TGGTCAAAGTACTGGAGTTGC 58.154 47.619 0.00 0.00 0.00 4.17
165 166 2.152016 GGTCAAAGTACTGGAGTTGCC 58.848 52.381 0.00 0.00 37.10 4.52
166 167 2.486548 GGTCAAAGTACTGGAGTTGCCA 60.487 50.000 0.00 0.00 46.96 4.92
178 179 5.581126 TGGAGTTGCCATCATCAAAATAC 57.419 39.130 0.00 0.00 43.33 1.89
179 180 5.263599 TGGAGTTGCCATCATCAAAATACT 58.736 37.500 0.00 0.00 43.33 2.12
180 181 6.422333 TGGAGTTGCCATCATCAAAATACTA 58.578 36.000 0.00 0.00 43.33 1.82
181 182 6.889177 TGGAGTTGCCATCATCAAAATACTAA 59.111 34.615 0.00 0.00 43.33 2.24
182 183 7.395772 TGGAGTTGCCATCATCAAAATACTAAA 59.604 33.333 0.00 0.00 43.33 1.85
183 184 8.250332 GGAGTTGCCATCATCAAAATACTAAAA 58.750 33.333 0.00 0.00 36.34 1.52
184 185 9.807649 GAGTTGCCATCATCAAAATACTAAAAT 57.192 29.630 0.00 0.00 0.00 1.82
187 188 8.422973 TGCCATCATCAAAATACTAAAATTGC 57.577 30.769 0.00 0.00 0.00 3.56
188 189 7.495279 TGCCATCATCAAAATACTAAAATTGCC 59.505 33.333 0.00 0.00 0.00 4.52
189 190 7.495279 GCCATCATCAAAATACTAAAATTGCCA 59.505 33.333 0.00 0.00 0.00 4.92
190 191 9.550406 CCATCATCAAAATACTAAAATTGCCAT 57.450 29.630 0.00 0.00 0.00 4.40
195 196 8.854979 TCAAAATACTAAAATTGCCATGATCG 57.145 30.769 0.00 0.00 0.00 3.69
196 197 8.681806 TCAAAATACTAAAATTGCCATGATCGA 58.318 29.630 0.00 0.00 0.00 3.59
197 198 8.745837 CAAAATACTAAAATTGCCATGATCGAC 58.254 33.333 0.00 0.00 0.00 4.20
198 199 7.566760 AATACTAAAATTGCCATGATCGACA 57.433 32.000 0.00 0.00 0.00 4.35
199 200 5.895636 ACTAAAATTGCCATGATCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
200 201 6.266168 ACTAAAATTGCCATGATCGACAAA 57.734 33.333 0.00 0.00 0.00 2.83
201 202 6.092748 ACTAAAATTGCCATGATCGACAAAC 58.907 36.000 0.00 0.00 0.00 2.93
202 203 4.789012 AAATTGCCATGATCGACAAACT 57.211 36.364 0.00 0.00 0.00 2.66
203 204 3.770263 ATTGCCATGATCGACAAACTG 57.230 42.857 0.00 0.00 0.00 3.16
204 205 2.470983 TGCCATGATCGACAAACTGA 57.529 45.000 0.00 0.00 0.00 3.41
205 206 2.777094 TGCCATGATCGACAAACTGAA 58.223 42.857 0.00 0.00 0.00 3.02
206 207 3.145286 TGCCATGATCGACAAACTGAAA 58.855 40.909 0.00 0.00 0.00 2.69
207 208 3.758023 TGCCATGATCGACAAACTGAAAT 59.242 39.130 0.00 0.00 0.00 2.17
208 209 4.218200 TGCCATGATCGACAAACTGAAATT 59.782 37.500 0.00 0.00 0.00 1.82
209 210 4.560035 GCCATGATCGACAAACTGAAATTG 59.440 41.667 0.00 0.00 0.00 2.32
210 211 4.560035 CCATGATCGACAAACTGAAATTGC 59.440 41.667 0.00 0.00 0.00 3.56
211 212 4.159377 TGATCGACAAACTGAAATTGCC 57.841 40.909 0.00 0.00 0.00 4.52
212 213 3.567585 TGATCGACAAACTGAAATTGCCA 59.432 39.130 0.00 0.00 0.00 4.92
213 214 3.347958 TCGACAAACTGAAATTGCCAC 57.652 42.857 0.00 0.00 0.00 5.01
214 215 2.685388 TCGACAAACTGAAATTGCCACA 59.315 40.909 0.00 0.00 0.00 4.17
215 216 3.317711 TCGACAAACTGAAATTGCCACAT 59.682 39.130 0.00 0.00 0.00 3.21
216 217 3.426191 CGACAAACTGAAATTGCCACATG 59.574 43.478 0.00 0.00 0.00 3.21
217 218 3.731089 ACAAACTGAAATTGCCACATGG 58.269 40.909 0.00 0.00 38.53 3.66
233 234 4.923281 CCACATGGCAACTTTAGTTTAAGC 59.077 41.667 0.00 0.00 35.83 3.09
234 235 5.508825 CCACATGGCAACTTTAGTTTAAGCA 60.509 40.000 0.00 0.00 35.83 3.91
235 236 5.402270 CACATGGCAACTTTAGTTTAAGCAC 59.598 40.000 0.00 0.00 35.83 4.40
236 237 5.301805 ACATGGCAACTTTAGTTTAAGCACT 59.698 36.000 0.00 0.00 35.83 4.40
237 238 6.488683 ACATGGCAACTTTAGTTTAAGCACTA 59.511 34.615 0.00 0.00 35.83 2.74
238 239 7.176690 ACATGGCAACTTTAGTTTAAGCACTAT 59.823 33.333 0.00 0.00 35.83 2.12
239 240 6.908825 TGGCAACTTTAGTTTAAGCACTATG 58.091 36.000 5.98 0.00 35.83 2.23
240 241 6.712998 TGGCAACTTTAGTTTAAGCACTATGA 59.287 34.615 5.98 0.00 35.83 2.15
241 242 7.021790 GGCAACTTTAGTTTAAGCACTATGAC 58.978 38.462 5.98 0.00 35.83 3.06
242 243 7.308348 GGCAACTTTAGTTTAAGCACTATGACA 60.308 37.037 5.98 0.00 35.83 3.58
243 244 8.073768 GCAACTTTAGTTTAAGCACTATGACAA 58.926 33.333 0.00 0.00 35.83 3.18
244 245 9.382244 CAACTTTAGTTTAAGCACTATGACAAC 57.618 33.333 0.00 0.00 35.83 3.32
245 246 8.904099 ACTTTAGTTTAAGCACTATGACAACT 57.096 30.769 0.00 0.00 0.00 3.16
246 247 9.991906 ACTTTAGTTTAAGCACTATGACAACTA 57.008 29.630 0.00 0.00 0.00 2.24
248 249 9.767228 TTTAGTTTAAGCACTATGACAACTACA 57.233 29.630 0.00 0.00 0.00 2.74
249 250 7.891183 AGTTTAAGCACTATGACAACTACAG 57.109 36.000 0.00 0.00 0.00 2.74
250 251 7.442656 AGTTTAAGCACTATGACAACTACAGT 58.557 34.615 0.00 0.00 0.00 3.55
251 252 7.385205 AGTTTAAGCACTATGACAACTACAGTG 59.615 37.037 0.00 0.00 39.65 3.66
252 253 4.873746 AGCACTATGACAACTACAGTGT 57.126 40.909 0.00 0.00 39.03 3.55
253 254 5.977489 AGCACTATGACAACTACAGTGTA 57.023 39.130 2.36 2.36 39.03 2.90
254 255 6.340962 AGCACTATGACAACTACAGTGTAA 57.659 37.500 4.21 0.00 39.03 2.41
255 256 6.755206 AGCACTATGACAACTACAGTGTAAA 58.245 36.000 4.21 0.00 39.03 2.01
256 257 6.645415 AGCACTATGACAACTACAGTGTAAAC 59.355 38.462 4.21 0.00 39.03 2.01
257 258 6.422701 GCACTATGACAACTACAGTGTAAACA 59.577 38.462 4.21 1.55 39.03 2.83
258 259 7.117812 GCACTATGACAACTACAGTGTAAACAT 59.882 37.037 4.21 8.06 39.03 2.71
259 260 8.648097 CACTATGACAACTACAGTGTAAACATC 58.352 37.037 4.21 1.53 33.53 3.06
260 261 8.364894 ACTATGACAACTACAGTGTAAACATCA 58.635 33.333 4.21 6.89 0.00 3.07
261 262 9.371136 CTATGACAACTACAGTGTAAACATCAT 57.629 33.333 17.28 17.28 0.00 2.45
262 263 7.420184 TGACAACTACAGTGTAAACATCATG 57.580 36.000 4.21 0.00 0.00 3.07
263 264 6.426633 TGACAACTACAGTGTAAACATCATGG 59.573 38.462 4.21 0.00 0.00 3.66
264 265 5.181245 ACAACTACAGTGTAAACATCATGGC 59.819 40.000 4.21 0.00 0.00 4.40
265 266 4.905429 ACTACAGTGTAAACATCATGGCA 58.095 39.130 4.21 0.00 0.00 4.92
266 267 5.312895 ACTACAGTGTAAACATCATGGCAA 58.687 37.500 4.21 0.00 0.00 4.52
267 268 5.945784 ACTACAGTGTAAACATCATGGCAAT 59.054 36.000 4.21 0.00 0.00 3.56
268 269 5.726980 ACAGTGTAAACATCATGGCAATT 57.273 34.783 0.00 0.00 0.00 2.32
269 270 6.100404 ACAGTGTAAACATCATGGCAATTT 57.900 33.333 0.00 0.00 0.00 1.82
270 271 6.523840 ACAGTGTAAACATCATGGCAATTTT 58.476 32.000 0.00 0.00 0.00 1.82
271 272 6.991531 ACAGTGTAAACATCATGGCAATTTTT 59.008 30.769 0.00 0.00 0.00 1.94
272 273 7.041916 ACAGTGTAAACATCATGGCAATTTTTG 60.042 33.333 0.00 0.00 0.00 2.44
273 274 6.427547 AGTGTAAACATCATGGCAATTTTTGG 59.572 34.615 0.00 0.00 0.00 3.28
274 275 5.704515 TGTAAACATCATGGCAATTTTTGGG 59.295 36.000 0.00 0.00 0.00 4.12
275 276 2.713877 ACATCATGGCAATTTTTGGGC 58.286 42.857 0.00 0.00 0.00 5.36
276 277 2.040012 ACATCATGGCAATTTTTGGGCA 59.960 40.909 0.00 0.00 44.07 5.36
277 278 2.945080 TCATGGCAATTTTTGGGCAA 57.055 40.000 0.00 0.00 43.13 4.52
278 279 3.436577 TCATGGCAATTTTTGGGCAAT 57.563 38.095 0.00 0.00 43.13 3.56
279 280 3.764218 TCATGGCAATTTTTGGGCAATT 58.236 36.364 0.00 0.00 43.13 2.32
280 281 4.150359 TCATGGCAATTTTTGGGCAATTT 58.850 34.783 0.00 0.00 43.13 1.82
281 282 4.587684 TCATGGCAATTTTTGGGCAATTTT 59.412 33.333 0.00 0.00 43.13 1.82
282 283 5.070047 TCATGGCAATTTTTGGGCAATTTTT 59.930 32.000 0.00 0.00 43.13 1.94
309 310 7.865875 TTTTTGTCGAAACATATCAACATGG 57.134 32.000 0.00 0.00 34.73 3.66
310 311 5.559427 TTGTCGAAACATATCAACATGGG 57.441 39.130 0.00 0.00 34.73 4.00
311 312 4.584874 TGTCGAAACATATCAACATGGGT 58.415 39.130 0.00 0.00 0.00 4.51
312 313 4.634004 TGTCGAAACATATCAACATGGGTC 59.366 41.667 0.00 0.00 0.00 4.46
313 314 4.876107 GTCGAAACATATCAACATGGGTCT 59.124 41.667 0.00 0.00 0.00 3.85
314 315 6.046593 GTCGAAACATATCAACATGGGTCTA 58.953 40.000 0.00 0.00 0.00 2.59
315 316 6.201044 GTCGAAACATATCAACATGGGTCTAG 59.799 42.308 0.00 0.00 0.00 2.43
316 317 6.049149 CGAAACATATCAACATGGGTCTAGT 58.951 40.000 0.00 0.00 0.00 2.57
317 318 6.538742 CGAAACATATCAACATGGGTCTAGTT 59.461 38.462 0.00 0.00 0.00 2.24
318 319 7.065803 CGAAACATATCAACATGGGTCTAGTTT 59.934 37.037 0.00 0.02 0.00 2.66
319 320 8.650143 AAACATATCAACATGGGTCTAGTTTT 57.350 30.769 0.00 0.00 0.00 2.43
320 321 7.630242 ACATATCAACATGGGTCTAGTTTTG 57.370 36.000 0.00 0.00 0.00 2.44
321 322 7.402054 ACATATCAACATGGGTCTAGTTTTGA 58.598 34.615 0.00 0.00 0.00 2.69
322 323 7.888021 ACATATCAACATGGGTCTAGTTTTGAA 59.112 33.333 0.00 0.00 0.00 2.69
323 324 6.824305 ATCAACATGGGTCTAGTTTTGAAG 57.176 37.500 0.00 0.00 0.00 3.02
324 325 5.935945 TCAACATGGGTCTAGTTTTGAAGA 58.064 37.500 0.00 0.00 0.00 2.87
325 326 6.542821 TCAACATGGGTCTAGTTTTGAAGAT 58.457 36.000 0.00 0.00 0.00 2.40
326 327 6.655003 TCAACATGGGTCTAGTTTTGAAGATC 59.345 38.462 0.00 0.00 0.00 2.75
327 328 6.380079 ACATGGGTCTAGTTTTGAAGATCT 57.620 37.500 0.00 0.00 0.00 2.75
328 329 6.410540 ACATGGGTCTAGTTTTGAAGATCTC 58.589 40.000 0.00 0.00 0.00 2.75
329 330 5.073311 TGGGTCTAGTTTTGAAGATCTCG 57.927 43.478 0.00 0.00 0.00 4.04
330 331 4.527038 TGGGTCTAGTTTTGAAGATCTCGT 59.473 41.667 0.00 0.00 0.00 4.18
331 332 5.103687 GGGTCTAGTTTTGAAGATCTCGTC 58.896 45.833 0.00 0.00 0.00 4.20
332 333 4.794246 GGTCTAGTTTTGAAGATCTCGTCG 59.206 45.833 0.00 0.00 0.00 5.12
333 334 5.391736 GGTCTAGTTTTGAAGATCTCGTCGA 60.392 44.000 0.00 0.00 0.00 4.20
334 335 5.735427 GTCTAGTTTTGAAGATCTCGTCGAG 59.265 44.000 16.33 16.33 0.00 4.04
335 336 4.768130 AGTTTTGAAGATCTCGTCGAGA 57.232 40.909 26.15 26.15 43.20 4.04
336 337 4.477780 AGTTTTGAAGATCTCGTCGAGAC 58.522 43.478 26.46 18.95 41.76 3.36
350 351 3.777478 GTCGAGACGGATTTAATGGTGA 58.223 45.455 0.00 0.00 0.00 4.02
351 352 4.178540 GTCGAGACGGATTTAATGGTGAA 58.821 43.478 0.00 0.00 0.00 3.18
352 353 4.628333 GTCGAGACGGATTTAATGGTGAAA 59.372 41.667 0.00 0.00 0.00 2.69
353 354 5.121142 GTCGAGACGGATTTAATGGTGAAAA 59.879 40.000 0.00 0.00 0.00 2.29
354 355 5.121142 TCGAGACGGATTTAATGGTGAAAAC 59.879 40.000 0.00 0.00 0.00 2.43
355 356 5.291293 AGACGGATTTAATGGTGAAAACG 57.709 39.130 0.00 0.00 0.00 3.60
356 357 4.155280 AGACGGATTTAATGGTGAAAACGG 59.845 41.667 0.00 0.00 0.00 4.44
357 358 4.073549 ACGGATTTAATGGTGAAAACGGA 58.926 39.130 0.00 0.00 0.00 4.69
358 359 4.703093 ACGGATTTAATGGTGAAAACGGAT 59.297 37.500 0.00 0.00 0.00 4.18
359 360 5.184287 ACGGATTTAATGGTGAAAACGGATT 59.816 36.000 0.00 0.00 0.00 3.01
360 361 6.096695 CGGATTTAATGGTGAAAACGGATTT 58.903 36.000 0.00 0.00 0.00 2.17
361 362 6.588373 CGGATTTAATGGTGAAAACGGATTTT 59.412 34.615 0.00 0.00 40.83 1.82
362 363 7.117092 CGGATTTAATGGTGAAAACGGATTTTT 59.883 33.333 0.00 0.00 38.17 1.94
363 364 9.425577 GGATTTAATGGTGAAAACGGATTTTTA 57.574 29.630 0.00 0.00 38.17 1.52
371 372 9.685828 TGGTGAAAACGGATTTTTAATTAGAAG 57.314 29.630 0.00 0.00 38.17 2.85
372 373 9.902196 GGTGAAAACGGATTTTTAATTAGAAGA 57.098 29.630 0.00 0.00 38.17 2.87
423 424 6.585695 AAAATTCTTGCTGATGTCATCTGT 57.414 33.333 17.91 0.00 0.00 3.41
424 425 6.585695 AAATTCTTGCTGATGTCATCTGTT 57.414 33.333 17.91 4.12 0.00 3.16
425 426 5.814764 ATTCTTGCTGATGTCATCTGTTC 57.185 39.130 17.91 6.13 0.00 3.18
426 427 4.276058 TCTTGCTGATGTCATCTGTTCA 57.724 40.909 17.91 8.23 0.00 3.18
427 428 3.999001 TCTTGCTGATGTCATCTGTTCAC 59.001 43.478 17.91 5.26 0.00 3.18
428 429 3.405823 TGCTGATGTCATCTGTTCACA 57.594 42.857 17.91 7.37 0.00 3.58
429 430 3.946606 TGCTGATGTCATCTGTTCACAT 58.053 40.909 17.91 0.00 33.32 3.21
430 431 3.687698 TGCTGATGTCATCTGTTCACATG 59.312 43.478 17.91 0.00 30.71 3.21
431 432 3.688185 GCTGATGTCATCTGTTCACATGT 59.312 43.478 17.91 0.00 30.71 3.21
432 433 4.436986 GCTGATGTCATCTGTTCACATGTG 60.437 45.833 20.18 20.18 30.71 3.21
433 434 4.004982 TGATGTCATCTGTTCACATGTGG 58.995 43.478 25.16 9.61 30.71 4.17
434 435 2.153645 TGTCATCTGTTCACATGTGGC 58.846 47.619 25.16 17.96 0.00 5.01
435 436 2.153645 GTCATCTGTTCACATGTGGCA 58.846 47.619 25.16 21.12 0.00 4.92
436 437 2.553602 GTCATCTGTTCACATGTGGCAA 59.446 45.455 25.16 10.80 0.00 4.52
437 438 3.004629 GTCATCTGTTCACATGTGGCAAA 59.995 43.478 25.16 12.14 0.00 3.68
438 439 3.004629 TCATCTGTTCACATGTGGCAAAC 59.995 43.478 25.16 20.84 0.00 2.93
439 440 1.333308 TCTGTTCACATGTGGCAAACG 59.667 47.619 25.16 16.45 0.00 3.60
440 441 1.333308 CTGTTCACATGTGGCAAACGA 59.667 47.619 25.16 11.69 0.00 3.85
441 442 1.333308 TGTTCACATGTGGCAAACGAG 59.667 47.619 25.16 0.00 0.00 4.18
442 443 1.333619 GTTCACATGTGGCAAACGAGT 59.666 47.619 25.16 0.00 0.00 4.18
443 444 0.943673 TCACATGTGGCAAACGAGTG 59.056 50.000 25.16 0.00 37.46 3.51
444 445 0.040157 CACATGTGGCAAACGAGTGG 60.040 55.000 18.51 0.00 34.36 4.00
445 446 0.465460 ACATGTGGCAAACGAGTGGT 60.465 50.000 0.00 0.00 0.00 4.16
446 447 1.202710 ACATGTGGCAAACGAGTGGTA 60.203 47.619 0.00 0.00 0.00 3.25
447 448 1.876799 CATGTGGCAAACGAGTGGTAA 59.123 47.619 0.00 0.00 0.00 2.85
448 449 2.039818 TGTGGCAAACGAGTGGTAAA 57.960 45.000 0.00 0.00 0.00 2.01
449 450 1.944024 TGTGGCAAACGAGTGGTAAAG 59.056 47.619 0.00 0.00 0.00 1.85
450 451 1.265905 GTGGCAAACGAGTGGTAAAGG 59.734 52.381 0.00 0.00 0.00 3.11
451 452 1.141254 TGGCAAACGAGTGGTAAAGGA 59.859 47.619 0.00 0.00 0.00 3.36
452 453 1.804748 GGCAAACGAGTGGTAAAGGAG 59.195 52.381 0.00 0.00 0.00 3.69
453 454 1.804748 GCAAACGAGTGGTAAAGGAGG 59.195 52.381 0.00 0.00 0.00 4.30
454 455 1.804748 CAAACGAGTGGTAAAGGAGGC 59.195 52.381 0.00 0.00 0.00 4.70
455 456 0.037605 AACGAGTGGTAAAGGAGGCG 60.038 55.000 0.00 0.00 0.00 5.52
456 457 1.183676 ACGAGTGGTAAAGGAGGCGT 61.184 55.000 0.00 0.00 0.00 5.68
457 458 0.736325 CGAGTGGTAAAGGAGGCGTG 60.736 60.000 0.00 0.00 0.00 5.34
458 459 0.320697 GAGTGGTAAAGGAGGCGTGT 59.679 55.000 0.00 0.00 0.00 4.49
459 460 0.034896 AGTGGTAAAGGAGGCGTGTG 59.965 55.000 0.00 0.00 0.00 3.82
460 461 0.953960 GTGGTAAAGGAGGCGTGTGG 60.954 60.000 0.00 0.00 0.00 4.17
461 462 1.122632 TGGTAAAGGAGGCGTGTGGA 61.123 55.000 0.00 0.00 0.00 4.02
462 463 0.035739 GGTAAAGGAGGCGTGTGGAA 59.964 55.000 0.00 0.00 0.00 3.53
463 464 1.543871 GGTAAAGGAGGCGTGTGGAAA 60.544 52.381 0.00 0.00 0.00 3.13
464 465 2.223745 GTAAAGGAGGCGTGTGGAAAA 58.776 47.619 0.00 0.00 0.00 2.29
465 466 1.770294 AAAGGAGGCGTGTGGAAAAA 58.230 45.000 0.00 0.00 0.00 1.94
466 467 1.318576 AAGGAGGCGTGTGGAAAAAG 58.681 50.000 0.00 0.00 0.00 2.27
467 468 0.472471 AGGAGGCGTGTGGAAAAAGA 59.528 50.000 0.00 0.00 0.00 2.52
468 469 0.875059 GGAGGCGTGTGGAAAAAGAG 59.125 55.000 0.00 0.00 0.00 2.85
469 470 1.542547 GGAGGCGTGTGGAAAAAGAGA 60.543 52.381 0.00 0.00 0.00 3.10
470 471 1.531578 GAGGCGTGTGGAAAAAGAGAC 59.468 52.381 0.00 0.00 0.00 3.36
471 472 0.591659 GGCGTGTGGAAAAAGAGACC 59.408 55.000 0.00 0.00 0.00 3.85
472 473 0.234884 GCGTGTGGAAAAAGAGACCG 59.765 55.000 0.00 0.00 0.00 4.79
473 474 1.860676 CGTGTGGAAAAAGAGACCGA 58.139 50.000 0.00 0.00 0.00 4.69
474 475 2.206750 CGTGTGGAAAAAGAGACCGAA 58.793 47.619 0.00 0.00 0.00 4.30
475 476 2.221055 CGTGTGGAAAAAGAGACCGAAG 59.779 50.000 0.00 0.00 0.00 3.79
476 477 2.031944 GTGTGGAAAAAGAGACCGAAGC 60.032 50.000 0.00 0.00 0.00 3.86
477 478 2.218603 GTGGAAAAAGAGACCGAAGCA 58.781 47.619 0.00 0.00 0.00 3.91
1130 1131 0.401738 TTGGGTGAGCTTTCCCTGAG 59.598 55.000 22.11 0.00 43.74 3.35
1257 1258 1.538204 CGCGGTATGGCTCAGTACAAT 60.538 52.381 0.00 0.00 0.00 2.71
1283 1284 4.315803 GTGTGGCACTTGTACTGTAATCT 58.684 43.478 19.83 0.00 0.00 2.40
1393 1394 2.531522 AAATGTGGTGGCAAAAGCTC 57.468 45.000 0.00 0.00 0.00 4.09
1480 1481 5.674525 TCAGATCACCATTCACCTGTTATC 58.325 41.667 0.00 0.00 0.00 1.75
1609 1610 6.115446 TGGACTCTTTAAGCATACAGGATTG 58.885 40.000 0.00 0.00 0.00 2.67
1686 1687 7.338449 TCCTTGGTGCCTAATTACAAAGTAATC 59.662 37.037 3.16 0.00 0.00 1.75
2203 2230 9.830975 ACTAATTGTCTAATTTTTGTTTGCCTT 57.169 25.926 0.00 0.00 37.64 4.35
2216 2243 8.443953 TTTTGTTTGCCTTTACTATTTGCAAT 57.556 26.923 0.00 0.00 41.12 3.56
2254 2282 9.589111 TGTCTAAAAATTAAAACACCAACCTTC 57.411 29.630 0.00 0.00 0.00 3.46
2259 2287 7.841915 AAATTAAAACACCAACCTTCTTGTG 57.158 32.000 0.00 0.00 0.00 3.33
2261 2289 7.648039 ATTAAAACACCAACCTTCTTGTGTA 57.352 32.000 0.00 0.00 0.00 2.90
2262 2290 5.986501 AAAACACCAACCTTCTTGTGTAA 57.013 34.783 0.00 0.00 0.00 2.41
2314 2342 9.685276 ACATGGAATCTACATTGATAACTTTGA 57.315 29.630 0.00 0.00 0.00 2.69
2389 2417 3.577313 GCTGGCGGATTCGAAGGC 61.577 66.667 3.35 7.03 39.00 4.35
2423 2451 4.594970 TCCTTTTGAGGATATTTTCGGCA 58.405 39.130 0.00 0.00 32.09 5.69
2524 2552 3.865164 CAGTTTGGTGGTTTTGCTTCTTC 59.135 43.478 0.00 0.00 0.00 2.87
2535 2563 6.266103 TGGTTTTGCTTCTTCTCAAATCTCAT 59.734 34.615 0.00 0.00 32.92 2.90
2587 2616 9.894783 TGACTAAGCAGAAATAGTTATATCGTC 57.105 33.333 0.00 0.00 32.66 4.20
2606 2636 7.693969 ATCGTCTGGAAAATCTTTCATCTTT 57.306 32.000 1.88 0.00 0.00 2.52
2622 2652 8.721019 TTTCATCTTTGCAATTTTCAGTTTCT 57.279 26.923 0.00 0.00 0.00 2.52
2824 2864 8.888579 ATATTTCTCGATCCGTTTCTACATTT 57.111 30.769 0.00 0.00 0.00 2.32
2825 2865 7.611213 ATTTCTCGATCCGTTTCTACATTTT 57.389 32.000 0.00 0.00 0.00 1.82
2826 2866 7.429636 TTTCTCGATCCGTTTCTACATTTTT 57.570 32.000 0.00 0.00 0.00 1.94
2827 2867 6.403333 TCTCGATCCGTTTCTACATTTTTG 57.597 37.500 0.00 0.00 0.00 2.44
2828 2868 5.929992 TCTCGATCCGTTTCTACATTTTTGT 59.070 36.000 0.00 0.00 0.00 2.83
2829 2869 6.425721 TCTCGATCCGTTTCTACATTTTTGTT 59.574 34.615 0.00 0.00 0.00 2.83
2830 2870 6.961576 TCGATCCGTTTCTACATTTTTGTTT 58.038 32.000 0.00 0.00 0.00 2.83
2831 2871 7.419204 TCGATCCGTTTCTACATTTTTGTTTT 58.581 30.769 0.00 0.00 0.00 2.43
2832 2872 8.557864 TCGATCCGTTTCTACATTTTTGTTTTA 58.442 29.630 0.00 0.00 0.00 1.52
2833 2873 8.624028 CGATCCGTTTCTACATTTTTGTTTTAC 58.376 33.333 0.00 0.00 0.00 2.01
2834 2874 9.673454 GATCCGTTTCTACATTTTTGTTTTACT 57.327 29.630 0.00 0.00 0.00 2.24
2836 2876 9.291664 TCCGTTTCTACATTTTTGTTTTACTTG 57.708 29.630 0.00 0.00 0.00 3.16
2837 2877 9.291664 CCGTTTCTACATTTTTGTTTTACTTGA 57.708 29.630 0.00 0.00 0.00 3.02
2914 2954 5.543405 AGCATATCTAATCTGACCTCTGCTT 59.457 40.000 0.00 0.00 32.72 3.91
3026 3066 3.447586 TCTTTGACCGTTATAGCTCTGCT 59.552 43.478 0.00 0.00 43.41 4.24
3158 3198 4.956085 TGCGAAACCTGCAGTATGTATAT 58.044 39.130 13.81 0.00 39.31 0.86
3174 3214 9.199982 AGTATGTATATGCACGTGTATTTTACC 57.800 33.333 24.19 12.80 0.00 2.85
3222 3262 8.665685 GGTAACTAAATGTCGTCTTTGAATCAT 58.334 33.333 0.00 0.00 0.00 2.45
3332 3372 5.131142 CAGGGGTTCTGGATATGTTAGTTCT 59.869 44.000 0.00 0.00 39.76 3.01
3336 3376 6.352737 GGGTTCTGGATATGTTAGTTCTTCCA 60.353 42.308 0.00 0.00 0.00 3.53
3343 3383 2.846193 TGTTAGTTCTTCCACCAGCAC 58.154 47.619 0.00 0.00 0.00 4.40
3381 3421 9.639563 TTATCAAGATGCCTTTGACCAATATAA 57.360 29.630 0.00 0.00 0.00 0.98
3509 3549 5.460419 GCAAGACTGTAAAGGTGAGATATCG 59.540 44.000 0.00 0.00 0.00 2.92
3520 3560 8.594881 AAAGGTGAGATATCGCTTTGTAATAG 57.405 34.615 8.00 0.00 0.00 1.73
3528 3568 9.360093 AGATATCGCTTTGTAATAGCAACTATC 57.640 33.333 0.00 0.00 38.55 2.08
3529 3569 9.140286 GATATCGCTTTGTAATAGCAACTATCA 57.860 33.333 0.00 0.00 38.55 2.15
3530 3570 6.828502 TCGCTTTGTAATAGCAACTATCAG 57.171 37.500 0.00 0.00 38.55 2.90
3531 3571 6.338146 TCGCTTTGTAATAGCAACTATCAGT 58.662 36.000 0.00 0.00 38.55 3.41
3532 3572 6.816640 TCGCTTTGTAATAGCAACTATCAGTT 59.183 34.615 0.00 0.00 39.39 3.16
3583 3624 1.202348 GCACATTTCTGTACCAAGCCC 59.798 52.381 0.00 0.00 33.14 5.19
3589 3630 0.331278 TCTGTACCAAGCCCCCAATG 59.669 55.000 0.00 0.00 0.00 2.82
3627 3668 5.988310 TGACCATTCGTTAAGGTTCTAGA 57.012 39.130 0.00 0.00 35.36 2.43
3785 3828 9.590088 CATCAACATCATAGTGAACAAATATCG 57.410 33.333 0.00 0.00 0.00 2.92
3793 3836 7.919091 TCATAGTGAACAAATATCGGTGTACTC 59.081 37.037 0.00 0.00 0.00 2.59
3977 4023 5.039333 GTCTTGCCATATTTGTCTGCAATC 58.961 41.667 0.00 0.00 40.72 2.67
3978 4024 4.705991 TCTTGCCATATTTGTCTGCAATCA 59.294 37.500 0.00 0.00 40.72 2.57
4183 4229 9.098355 TGATGTTCTTCTGTGTTTACTATATGC 57.902 33.333 0.00 0.00 0.00 3.14
4185 4231 7.390823 TGTTCTTCTGTGTTTACTATATGCCA 58.609 34.615 0.00 0.00 0.00 4.92
4307 4353 5.239525 CCTTTATGTAGCCATTAAGGTCAGC 59.760 44.000 10.76 0.00 46.03 4.26
4451 4497 8.839310 ATATCCATGTAGATGCTGTCTTAAAC 57.161 34.615 0.00 0.00 38.42 2.01
4554 4602 5.483937 GTGGTAAAATTGATCCCCCTTCTTT 59.516 40.000 0.00 0.00 0.00 2.52
4753 4802 6.346477 TCATGTTAAGAGTAGTTCTGTGCT 57.654 37.500 0.00 0.00 35.91 4.40
4966 5046 2.484889 GCAAACTATCCATCGGTCTCC 58.515 52.381 0.00 0.00 0.00 3.71
5037 5124 5.707298 TCTGAGAGGAAAAGGTAAATTGCAG 59.293 40.000 0.00 0.00 0.00 4.41
5125 5212 3.058224 AGTCGGTGCTTTTATGTTGAAGC 60.058 43.478 1.38 1.38 46.42 3.86
5841 5959 1.210478 GAGTAGGATGCTGCCTGGAAA 59.790 52.381 0.00 0.00 39.08 3.13
5843 5961 2.243221 AGTAGGATGCTGCCTGGAAATT 59.757 45.455 0.00 0.00 39.08 1.82
5844 5962 2.242882 AGGATGCTGCCTGGAAATTT 57.757 45.000 0.00 0.00 36.76 1.82
5845 5963 1.829222 AGGATGCTGCCTGGAAATTTG 59.171 47.619 0.00 0.00 36.76 2.32
5983 6103 0.907486 TCCCAAGAGTGAGGCATGAG 59.093 55.000 0.00 0.00 0.00 2.90
5984 6104 0.747283 CCCAAGAGTGAGGCATGAGC 60.747 60.000 0.00 0.00 41.10 4.26
5985 6105 0.035725 CCAAGAGTGAGGCATGAGCA 60.036 55.000 0.00 0.00 44.61 4.26
5986 6106 1.408405 CCAAGAGTGAGGCATGAGCAT 60.408 52.381 0.00 0.00 44.61 3.79
5987 6107 1.671328 CAAGAGTGAGGCATGAGCATG 59.329 52.381 6.11 6.11 44.61 4.06
5988 6108 1.201424 AGAGTGAGGCATGAGCATGA 58.799 50.000 14.27 0.00 44.61 3.07
6021 6141 8.023128 GCGGCATCTTGTATTGTATAATTGATT 58.977 33.333 0.00 0.00 0.00 2.57
6022 6142 9.333497 CGGCATCTTGTATTGTATAATTGATTG 57.667 33.333 0.00 0.00 0.00 2.67
6086 6207 2.120232 GTCTATTCATGTCGCTGGTCG 58.880 52.381 0.00 0.00 40.15 4.79
6088 6209 0.104120 TATTCATGTCGCTGGTCGGG 59.896 55.000 0.00 0.00 39.05 5.14
6095 6216 2.432628 CGCTGGTCGGGACACTTC 60.433 66.667 0.75 0.00 33.78 3.01
6096 6217 2.047179 GCTGGTCGGGACACTTCC 60.047 66.667 0.75 0.00 41.95 3.46
6102 6223 1.079405 TCGGGACACTTCCGCATTC 60.079 57.895 0.00 0.00 46.43 2.67
6119 6240 3.425193 GCATTCGAAACAATTTTGCTCGT 59.575 39.130 0.00 0.00 37.78 4.18
6130 6251 3.338818 TTTTGCTCGTTCTGCTTTCAG 57.661 42.857 0.00 0.00 41.67 3.02
6137 6258 2.612212 TCGTTCTGCTTTCAGTGGTTTC 59.388 45.455 0.00 0.00 41.10 2.78
6138 6259 2.354510 CGTTCTGCTTTCAGTGGTTTCA 59.645 45.455 0.00 0.00 41.10 2.69
6164 6286 5.427378 AGTTTGGATTTGGACAGTTTTTGG 58.573 37.500 0.00 0.00 0.00 3.28
6165 6287 5.188751 AGTTTGGATTTGGACAGTTTTTGGA 59.811 36.000 0.00 0.00 0.00 3.53
6166 6288 5.885449 TTGGATTTGGACAGTTTTTGGAT 57.115 34.783 0.00 0.00 0.00 3.41
6168 6290 4.653341 TGGATTTGGACAGTTTTTGGATGT 59.347 37.500 0.00 0.00 0.00 3.06
6169 6291 4.990426 GGATTTGGACAGTTTTTGGATGTG 59.010 41.667 0.00 0.00 0.00 3.21
6170 6292 4.399004 TTTGGACAGTTTTTGGATGTGG 57.601 40.909 0.00 0.00 0.00 4.17
6171 6293 3.025322 TGGACAGTTTTTGGATGTGGT 57.975 42.857 0.00 0.00 0.00 4.16
6172 6294 2.955660 TGGACAGTTTTTGGATGTGGTC 59.044 45.455 0.00 0.00 0.00 4.02
6174 6296 3.573967 GGACAGTTTTTGGATGTGGTCAT 59.426 43.478 0.00 0.00 36.95 3.06
6185 6325 1.979855 TGTGGTCATCCTTGTGGTTG 58.020 50.000 0.00 0.00 35.04 3.77
6189 6329 1.880027 GGTCATCCTTGTGGTTGTGTC 59.120 52.381 0.00 0.00 35.22 3.67
6190 6330 2.487265 GGTCATCCTTGTGGTTGTGTCT 60.487 50.000 0.00 0.00 35.22 3.41
6204 6344 2.997980 TGTGTCTTTCTGGAACTTGCA 58.002 42.857 0.00 0.00 0.00 4.08
6209 6349 3.319122 GTCTTTCTGGAACTTGCATGGTT 59.681 43.478 4.44 4.99 0.00 3.67
6213 6353 3.295093 TCTGGAACTTGCATGGTTTTCA 58.705 40.909 4.44 7.06 0.00 2.69
6215 6355 2.224018 TGGAACTTGCATGGTTTTCAGC 60.224 45.455 4.44 0.00 0.00 4.26
6219 6359 3.197265 ACTTGCATGGTTTTCAGCAAAC 58.803 40.909 4.44 0.00 45.18 2.93
6226 6564 5.782047 CATGGTTTTCAGCAAACTCCAATA 58.218 37.500 0.00 0.00 43.95 1.90
6227 6565 6.400568 CATGGTTTTCAGCAAACTCCAATAT 58.599 36.000 0.00 0.00 43.95 1.28
6240 6578 6.469782 AACTCCAATATTTGTAATGGCTGG 57.530 37.500 0.00 0.00 32.87 4.85
6247 6585 6.808008 ATATTTGTAATGGCTGGATTCTCG 57.192 37.500 0.00 0.00 0.00 4.04
6255 6593 2.300152 TGGCTGGATTCTCGTGGATATC 59.700 50.000 0.00 0.00 0.00 1.63
6260 6598 3.826729 TGGATTCTCGTGGATATCGATGT 59.173 43.478 8.54 0.00 36.73 3.06
6293 6631 9.490663 CTGGAAGTTTTTGTAATTCATATCGAC 57.509 33.333 0.00 0.00 0.00 4.20
6294 6632 9.004717 TGGAAGTTTTTGTAATTCATATCGACA 57.995 29.630 0.00 0.00 0.00 4.35
6295 6633 9.274065 GGAAGTTTTTGTAATTCATATCGACAC 57.726 33.333 0.00 0.00 0.00 3.67
6296 6634 8.874745 AAGTTTTTGTAATTCATATCGACACG 57.125 30.769 0.00 0.00 0.00 4.49
6297 6635 7.461107 AGTTTTTGTAATTCATATCGACACGG 58.539 34.615 0.00 0.00 0.00 4.94
6298 6636 5.398176 TTTGTAATTCATATCGACACGGC 57.602 39.130 0.00 0.00 0.00 5.68
6299 6637 4.048241 TGTAATTCATATCGACACGGCA 57.952 40.909 0.00 0.00 0.00 5.69
6300 6638 3.799963 TGTAATTCATATCGACACGGCAC 59.200 43.478 0.00 0.00 0.00 5.01
6301 6639 2.595124 ATTCATATCGACACGGCACA 57.405 45.000 0.00 0.00 0.00 4.57
6302 6640 2.371910 TTCATATCGACACGGCACAA 57.628 45.000 0.00 0.00 0.00 3.33
6328 6666 6.703165 AGAACATTTGAGCAATTTTGAGAACC 59.297 34.615 0.00 0.00 0.00 3.62
6330 6668 6.347696 ACATTTGAGCAATTTTGAGAACCAA 58.652 32.000 0.00 0.00 0.00 3.67
6331 6669 6.480981 ACATTTGAGCAATTTTGAGAACCAAG 59.519 34.615 0.00 0.00 35.94 3.61
6332 6670 5.596836 TTGAGCAATTTTGAGAACCAAGT 57.403 34.783 0.00 0.00 35.94 3.16
6333 6671 5.596836 TGAGCAATTTTGAGAACCAAGTT 57.403 34.783 0.00 0.00 35.94 2.66
6334 6672 5.591099 TGAGCAATTTTGAGAACCAAGTTC 58.409 37.500 0.00 0.00 42.25 3.01
6336 6674 4.651045 AGCAATTTTGAGAACCAAGTTCCT 59.349 37.500 3.91 0.00 42.85 3.36
6337 6675 4.984785 GCAATTTTGAGAACCAAGTTCCTC 59.015 41.667 3.91 2.85 42.85 3.71
6338 6676 5.221322 GCAATTTTGAGAACCAAGTTCCTCT 60.221 40.000 3.91 0.00 42.85 3.69
6339 6677 6.211515 CAATTTTGAGAACCAAGTTCCTCTG 58.788 40.000 3.91 0.00 42.85 3.35
6340 6678 4.771114 TTTGAGAACCAAGTTCCTCTGA 57.229 40.909 3.91 0.00 42.85 3.27
6341 6679 4.771114 TTGAGAACCAAGTTCCTCTGAA 57.229 40.909 3.91 0.00 42.85 3.02
6355 6693 3.172229 CTCTGAACGGAGGAAGAATCC 57.828 52.381 2.99 0.00 46.98 3.01
6372 6710 2.559785 CCATTGTGTGGCTGAGACC 58.440 57.895 0.00 0.00 42.12 3.85
6373 6711 0.037303 CCATTGTGTGGCTGAGACCT 59.963 55.000 0.00 0.00 42.12 3.85
6384 6722 0.671781 CTGAGACCTTGGACGCTTGG 60.672 60.000 0.00 0.00 0.00 3.61
6387 6725 1.371558 GACCTTGGACGCTTGGTCT 59.628 57.895 0.00 0.00 45.35 3.85
6389 6727 1.122019 ACCTTGGACGCTTGGTCTCT 61.122 55.000 0.00 0.00 45.35 3.10
6405 6743 0.177604 CTCTTCTCTCGCTGCCCAAT 59.822 55.000 0.00 0.00 0.00 3.16
6416 6754 1.619654 CTGCCCAATTCTGTCCACAA 58.380 50.000 0.00 0.00 0.00 3.33
6427 6765 2.303022 TCTGTCCACAACCTCATCTTCC 59.697 50.000 0.00 0.00 0.00 3.46
6428 6766 2.304180 CTGTCCACAACCTCATCTTCCT 59.696 50.000 0.00 0.00 0.00 3.36
6445 6783 5.017490 TCTTCCTCTCCTTGTACGAGAATT 58.983 41.667 12.02 0.00 35.98 2.17
6446 6784 5.480772 TCTTCCTCTCCTTGTACGAGAATTT 59.519 40.000 12.02 0.00 35.98 1.82
6448 6786 5.721232 TCCTCTCCTTGTACGAGAATTTTC 58.279 41.667 12.02 0.00 35.98 2.29
6450 6788 5.578727 CCTCTCCTTGTACGAGAATTTTCTG 59.421 44.000 12.02 0.00 37.73 3.02
6451 6789 6.097915 TCTCCTTGTACGAGAATTTTCTGT 57.902 37.500 12.02 0.10 37.73 3.41
6452 6790 6.522054 TCTCCTTGTACGAGAATTTTCTGTT 58.478 36.000 12.02 0.00 37.73 3.16
6476 6818 1.786937 TTGGTTGGTGGTTGCATCTT 58.213 45.000 0.00 0.00 0.00 2.40
6489 6831 4.181010 ATCTTGGATGCGGCGGCT 62.181 61.111 17.76 2.89 40.82 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.797556 GCAAGTATATTTTCTTAATTTCCCGTT 57.202 29.630 0.00 0.00 0.00 4.44
44 45 8.410912 GGCAAGTATATTTTCTTAATTTCCCGT 58.589 33.333 0.00 0.00 0.00 5.28
45 46 8.410141 TGGCAAGTATATTTTCTTAATTTCCCG 58.590 33.333 0.00 0.00 0.00 5.14
52 53 9.249053 TGGTTCATGGCAAGTATATTTTCTTAA 57.751 29.630 0.00 0.00 0.00 1.85
53 54 8.815565 TGGTTCATGGCAAGTATATTTTCTTA 57.184 30.769 0.00 0.00 0.00 2.10
54 55 7.716799 TGGTTCATGGCAAGTATATTTTCTT 57.283 32.000 0.00 0.00 0.00 2.52
55 56 7.902920 ATGGTTCATGGCAAGTATATTTTCT 57.097 32.000 0.00 0.00 0.00 2.52
57 58 9.816354 GTTTATGGTTCATGGCAAGTATATTTT 57.184 29.630 0.00 0.00 0.00 1.82
58 59 9.200817 AGTTTATGGTTCATGGCAAGTATATTT 57.799 29.630 0.00 0.00 0.00 1.40
59 60 8.766994 AGTTTATGGTTCATGGCAAGTATATT 57.233 30.769 0.00 0.00 0.00 1.28
60 61 9.860650 TTAGTTTATGGTTCATGGCAAGTATAT 57.139 29.630 0.00 0.00 0.00 0.86
61 62 9.688091 TTTAGTTTATGGTTCATGGCAAGTATA 57.312 29.630 0.00 0.00 0.00 1.47
62 63 8.588290 TTTAGTTTATGGTTCATGGCAAGTAT 57.412 30.769 0.00 0.00 0.00 2.12
63 64 8.410673 TTTTAGTTTATGGTTCATGGCAAGTA 57.589 30.769 0.00 0.00 0.00 2.24
64 65 6.909550 TTTAGTTTATGGTTCATGGCAAGT 57.090 33.333 0.00 0.00 0.00 3.16
65 66 8.658609 CAATTTTAGTTTATGGTTCATGGCAAG 58.341 33.333 0.00 0.00 0.00 4.01
66 67 7.118971 GCAATTTTAGTTTATGGTTCATGGCAA 59.881 33.333 0.00 0.00 0.00 4.52
67 68 6.593382 GCAATTTTAGTTTATGGTTCATGGCA 59.407 34.615 0.00 0.00 0.00 4.92
68 69 6.037062 GGCAATTTTAGTTTATGGTTCATGGC 59.963 38.462 0.00 0.00 0.00 4.40
69 70 7.102346 TGGCAATTTTAGTTTATGGTTCATGG 58.898 34.615 0.00 0.00 0.00 3.66
70 71 8.605746 CATGGCAATTTTAGTTTATGGTTCATG 58.394 33.333 0.00 0.00 0.00 3.07
71 72 8.538701 TCATGGCAATTTTAGTTTATGGTTCAT 58.461 29.630 0.00 0.00 0.00 2.57
72 73 7.901029 TCATGGCAATTTTAGTTTATGGTTCA 58.099 30.769 0.00 0.00 0.00 3.18
73 74 8.819974 CATCATGGCAATTTTAGTTTATGGTTC 58.180 33.333 0.00 0.00 0.00 3.62
74 75 7.280652 GCATCATGGCAATTTTAGTTTATGGTT 59.719 33.333 0.00 0.00 0.00 3.67
75 76 6.762661 GCATCATGGCAATTTTAGTTTATGGT 59.237 34.615 0.00 0.00 0.00 3.55
76 77 6.762187 TGCATCATGGCAATTTTAGTTTATGG 59.238 34.615 0.00 0.00 41.65 2.74
77 78 7.773864 TGCATCATGGCAATTTTAGTTTATG 57.226 32.000 0.00 0.00 41.65 1.90
91 92 2.875087 TTAAGTGCATGCATCATGGC 57.125 45.000 25.64 9.80 41.64 4.40
92 93 6.043327 CAATTTTAAGTGCATGCATCATGG 57.957 37.500 25.64 3.91 41.64 3.66
104 105 7.095910 TGTATGAACCATGGCAATTTTAAGTG 58.904 34.615 13.04 0.00 0.00 3.16
105 106 7.238486 TGTATGAACCATGGCAATTTTAAGT 57.762 32.000 13.04 0.00 0.00 2.24
106 107 8.545229 TTTGTATGAACCATGGCAATTTTAAG 57.455 30.769 13.04 0.00 0.00 1.85
107 108 8.908786 TTTTGTATGAACCATGGCAATTTTAA 57.091 26.923 13.04 0.00 0.00 1.52
108 109 8.908786 TTTTTGTATGAACCATGGCAATTTTA 57.091 26.923 13.04 0.00 0.00 1.52
109 110 7.814264 TTTTTGTATGAACCATGGCAATTTT 57.186 28.000 13.04 0.00 0.00 1.82
132 133 9.927668 CCAGTACTTTGACCATGAAAATTATTT 57.072 29.630 0.00 0.00 0.00 1.40
133 134 9.308000 TCCAGTACTTTGACCATGAAAATTATT 57.692 29.630 0.00 0.00 0.00 1.40
134 135 8.877864 TCCAGTACTTTGACCATGAAAATTAT 57.122 30.769 0.00 0.00 0.00 1.28
135 136 7.942341 ACTCCAGTACTTTGACCATGAAAATTA 59.058 33.333 0.00 0.00 0.00 1.40
136 137 6.777580 ACTCCAGTACTTTGACCATGAAAATT 59.222 34.615 0.00 0.00 0.00 1.82
137 138 6.306987 ACTCCAGTACTTTGACCATGAAAAT 58.693 36.000 0.00 0.00 0.00 1.82
138 139 5.690865 ACTCCAGTACTTTGACCATGAAAA 58.309 37.500 0.00 0.00 0.00 2.29
139 140 5.304686 ACTCCAGTACTTTGACCATGAAA 57.695 39.130 0.00 0.00 0.00 2.69
140 141 4.974645 ACTCCAGTACTTTGACCATGAA 57.025 40.909 0.00 0.00 0.00 2.57
141 142 4.641396 CAACTCCAGTACTTTGACCATGA 58.359 43.478 0.00 0.00 0.00 3.07
142 143 3.189287 GCAACTCCAGTACTTTGACCATG 59.811 47.826 8.83 0.00 0.00 3.66
143 144 3.412386 GCAACTCCAGTACTTTGACCAT 58.588 45.455 8.83 0.00 0.00 3.55
144 145 2.486548 GGCAACTCCAGTACTTTGACCA 60.487 50.000 8.83 0.00 34.01 4.02
145 146 2.152016 GGCAACTCCAGTACTTTGACC 58.848 52.381 8.83 6.13 34.01 4.02
146 147 2.846193 TGGCAACTCCAGTACTTTGAC 58.154 47.619 8.83 6.57 40.72 3.18
157 158 5.841957 AGTATTTTGATGATGGCAACTCC 57.158 39.130 0.00 0.00 37.61 3.85
158 159 9.807649 ATTTTAGTATTTTGATGATGGCAACTC 57.192 29.630 0.00 0.00 37.61 3.01
161 162 8.881743 GCAATTTTAGTATTTTGATGATGGCAA 58.118 29.630 0.00 0.00 0.00 4.52
162 163 7.495279 GGCAATTTTAGTATTTTGATGATGGCA 59.505 33.333 0.00 0.00 0.00 4.92
163 164 7.495279 TGGCAATTTTAGTATTTTGATGATGGC 59.505 33.333 0.00 0.00 0.00 4.40
164 165 8.945481 TGGCAATTTTAGTATTTTGATGATGG 57.055 30.769 0.00 0.00 0.00 3.51
169 170 9.467258 CGATCATGGCAATTTTAGTATTTTGAT 57.533 29.630 0.00 0.00 0.00 2.57
170 171 8.681806 TCGATCATGGCAATTTTAGTATTTTGA 58.318 29.630 0.00 0.00 0.00 2.69
171 172 8.745837 GTCGATCATGGCAATTTTAGTATTTTG 58.254 33.333 0.00 0.00 0.00 2.44
172 173 8.465999 TGTCGATCATGGCAATTTTAGTATTTT 58.534 29.630 0.00 0.00 0.00 1.82
173 174 7.995289 TGTCGATCATGGCAATTTTAGTATTT 58.005 30.769 0.00 0.00 0.00 1.40
174 175 7.566760 TGTCGATCATGGCAATTTTAGTATT 57.433 32.000 0.00 0.00 0.00 1.89
175 176 7.566760 TTGTCGATCATGGCAATTTTAGTAT 57.433 32.000 0.00 0.00 0.00 2.12
176 177 6.993786 TTGTCGATCATGGCAATTTTAGTA 57.006 33.333 0.00 0.00 0.00 1.82
177 178 5.895636 TTGTCGATCATGGCAATTTTAGT 57.104 34.783 0.00 0.00 0.00 2.24
178 179 6.252015 CAGTTTGTCGATCATGGCAATTTTAG 59.748 38.462 0.00 0.00 0.00 1.85
179 180 6.072230 TCAGTTTGTCGATCATGGCAATTTTA 60.072 34.615 0.00 0.00 0.00 1.52
180 181 4.925054 CAGTTTGTCGATCATGGCAATTTT 59.075 37.500 0.00 0.00 0.00 1.82
181 182 4.218200 TCAGTTTGTCGATCATGGCAATTT 59.782 37.500 0.00 0.00 0.00 1.82
182 183 3.758023 TCAGTTTGTCGATCATGGCAATT 59.242 39.130 0.00 0.00 0.00 2.32
183 184 3.346315 TCAGTTTGTCGATCATGGCAAT 58.654 40.909 0.00 0.00 0.00 3.56
184 185 2.777094 TCAGTTTGTCGATCATGGCAA 58.223 42.857 0.00 0.00 0.00 4.52
185 186 2.470983 TCAGTTTGTCGATCATGGCA 57.529 45.000 0.00 0.00 0.00 4.92
186 187 3.829886 TTTCAGTTTGTCGATCATGGC 57.170 42.857 0.00 0.00 0.00 4.40
187 188 4.560035 GCAATTTCAGTTTGTCGATCATGG 59.440 41.667 0.00 0.00 0.00 3.66
188 189 4.560035 GGCAATTTCAGTTTGTCGATCATG 59.440 41.667 0.00 0.00 0.00 3.07
189 190 4.218200 TGGCAATTTCAGTTTGTCGATCAT 59.782 37.500 0.00 0.00 31.33 2.45
190 191 3.567585 TGGCAATTTCAGTTTGTCGATCA 59.432 39.130 0.00 0.00 31.33 2.92
191 192 3.914364 GTGGCAATTTCAGTTTGTCGATC 59.086 43.478 0.00 0.00 31.33 3.69
192 193 3.317711 TGTGGCAATTTCAGTTTGTCGAT 59.682 39.130 0.00 0.00 31.33 3.59
193 194 2.685388 TGTGGCAATTTCAGTTTGTCGA 59.315 40.909 0.00 0.00 31.33 4.20
194 195 3.077229 TGTGGCAATTTCAGTTTGTCG 57.923 42.857 0.00 0.00 31.33 4.35
195 196 3.742369 CCATGTGGCAATTTCAGTTTGTC 59.258 43.478 0.00 0.00 0.00 3.18
196 197 3.731089 CCATGTGGCAATTTCAGTTTGT 58.269 40.909 0.00 0.00 0.00 2.83
210 211 4.923281 GCTTAAACTAAAGTTGCCATGTGG 59.077 41.667 0.00 0.00 38.44 4.17
211 212 5.402270 GTGCTTAAACTAAAGTTGCCATGTG 59.598 40.000 0.00 0.00 38.44 3.21
212 213 5.301805 AGTGCTTAAACTAAAGTTGCCATGT 59.698 36.000 0.00 0.00 38.44 3.21
213 214 5.772521 AGTGCTTAAACTAAAGTTGCCATG 58.227 37.500 0.00 0.00 38.44 3.66
214 215 7.393234 TCATAGTGCTTAAACTAAAGTTGCCAT 59.607 33.333 0.00 0.00 38.44 4.40
215 216 6.712998 TCATAGTGCTTAAACTAAAGTTGCCA 59.287 34.615 0.00 0.00 38.44 4.92
216 217 7.021790 GTCATAGTGCTTAAACTAAAGTTGCC 58.978 38.462 0.00 0.00 38.44 4.52
217 218 7.581476 TGTCATAGTGCTTAAACTAAAGTTGC 58.419 34.615 0.00 0.00 38.44 4.17
218 219 9.382244 GTTGTCATAGTGCTTAAACTAAAGTTG 57.618 33.333 0.00 0.00 38.44 3.16
219 220 9.338622 AGTTGTCATAGTGCTTAAACTAAAGTT 57.661 29.630 0.00 0.00 40.50 2.66
220 221 8.904099 AGTTGTCATAGTGCTTAAACTAAAGT 57.096 30.769 0.00 0.00 36.28 2.66
222 223 9.767228 TGTAGTTGTCATAGTGCTTAAACTAAA 57.233 29.630 0.00 0.00 36.28 1.85
223 224 9.419297 CTGTAGTTGTCATAGTGCTTAAACTAA 57.581 33.333 0.00 0.00 36.28 2.24
224 225 8.582437 ACTGTAGTTGTCATAGTGCTTAAACTA 58.418 33.333 0.00 0.00 37.08 2.24
225 226 7.385205 CACTGTAGTTGTCATAGTGCTTAAACT 59.615 37.037 0.00 0.00 33.28 2.66
226 227 7.170998 ACACTGTAGTTGTCATAGTGCTTAAAC 59.829 37.037 0.00 0.00 41.74 2.01
227 228 7.214381 ACACTGTAGTTGTCATAGTGCTTAAA 58.786 34.615 0.00 0.00 41.74 1.52
228 229 6.755206 ACACTGTAGTTGTCATAGTGCTTAA 58.245 36.000 0.00 0.00 41.74 1.85
229 230 6.340962 ACACTGTAGTTGTCATAGTGCTTA 57.659 37.500 0.00 0.00 41.74 3.09
230 231 5.215252 ACACTGTAGTTGTCATAGTGCTT 57.785 39.130 0.00 0.00 41.74 3.91
231 232 4.873746 ACACTGTAGTTGTCATAGTGCT 57.126 40.909 0.00 0.00 41.74 4.40
232 233 6.422701 TGTTTACACTGTAGTTGTCATAGTGC 59.577 38.462 0.00 0.00 41.74 4.40
233 234 7.940178 TGTTTACACTGTAGTTGTCATAGTG 57.060 36.000 0.00 0.00 43.20 2.74
234 235 8.364894 TGATGTTTACACTGTAGTTGTCATAGT 58.635 33.333 0.00 0.00 0.00 2.12
235 236 8.757164 TGATGTTTACACTGTAGTTGTCATAG 57.243 34.615 0.00 0.00 0.00 2.23
236 237 9.150348 CATGATGTTTACACTGTAGTTGTCATA 57.850 33.333 0.00 0.00 0.00 2.15
237 238 7.119699 CCATGATGTTTACACTGTAGTTGTCAT 59.880 37.037 0.00 0.00 0.00 3.06
238 239 6.426633 CCATGATGTTTACACTGTAGTTGTCA 59.573 38.462 0.00 0.00 0.00 3.58
239 240 6.620733 GCCATGATGTTTACACTGTAGTTGTC 60.621 42.308 0.00 0.00 0.00 3.18
240 241 5.181245 GCCATGATGTTTACACTGTAGTTGT 59.819 40.000 0.00 0.00 0.00 3.32
241 242 5.181056 TGCCATGATGTTTACACTGTAGTTG 59.819 40.000 0.00 0.00 0.00 3.16
242 243 5.312895 TGCCATGATGTTTACACTGTAGTT 58.687 37.500 0.00 0.00 0.00 2.24
243 244 4.905429 TGCCATGATGTTTACACTGTAGT 58.095 39.130 0.00 0.00 0.00 2.73
244 245 5.878332 TTGCCATGATGTTTACACTGTAG 57.122 39.130 0.00 0.00 0.00 2.74
245 246 6.832520 AATTGCCATGATGTTTACACTGTA 57.167 33.333 0.00 0.00 0.00 2.74
246 247 5.726980 AATTGCCATGATGTTTACACTGT 57.273 34.783 0.00 0.00 0.00 3.55
247 248 7.292292 CAAAAATTGCCATGATGTTTACACTG 58.708 34.615 0.00 0.00 0.00 3.66
248 249 6.427547 CCAAAAATTGCCATGATGTTTACACT 59.572 34.615 0.00 0.00 0.00 3.55
249 250 6.348376 CCCAAAAATTGCCATGATGTTTACAC 60.348 38.462 0.00 0.00 0.00 2.90
250 251 5.704515 CCCAAAAATTGCCATGATGTTTACA 59.295 36.000 0.00 0.00 0.00 2.41
251 252 5.391843 GCCCAAAAATTGCCATGATGTTTAC 60.392 40.000 0.00 0.00 0.00 2.01
252 253 4.699257 GCCCAAAAATTGCCATGATGTTTA 59.301 37.500 0.00 0.00 0.00 2.01
253 254 3.506844 GCCCAAAAATTGCCATGATGTTT 59.493 39.130 0.00 0.00 0.00 2.83
254 255 3.083293 GCCCAAAAATTGCCATGATGTT 58.917 40.909 0.00 0.00 0.00 2.71
255 256 2.040012 TGCCCAAAAATTGCCATGATGT 59.960 40.909 0.00 0.00 0.00 3.06
256 257 2.712709 TGCCCAAAAATTGCCATGATG 58.287 42.857 0.00 0.00 0.00 3.07
257 258 3.436577 TTGCCCAAAAATTGCCATGAT 57.563 38.095 0.00 0.00 0.00 2.45
258 259 2.945080 TTGCCCAAAAATTGCCATGA 57.055 40.000 0.00 0.00 0.00 3.07
259 260 4.522722 AAATTGCCCAAAAATTGCCATG 57.477 36.364 0.00 0.00 0.00 3.66
260 261 5.548181 AAAAATTGCCCAAAAATTGCCAT 57.452 30.435 0.00 0.00 0.00 4.40
285 286 6.865726 CCCATGTTGATATGTTTCGACAAAAA 59.134 34.615 0.00 0.00 41.99 1.94
286 287 6.015856 ACCCATGTTGATATGTTTCGACAAAA 60.016 34.615 0.00 0.00 41.99 2.44
287 288 5.475220 ACCCATGTTGATATGTTTCGACAAA 59.525 36.000 0.00 0.00 41.99 2.83
288 289 5.007034 ACCCATGTTGATATGTTTCGACAA 58.993 37.500 0.00 0.00 41.99 3.18
289 290 4.584874 ACCCATGTTGATATGTTTCGACA 58.415 39.130 0.00 0.00 42.68 4.35
290 291 4.876107 AGACCCATGTTGATATGTTTCGAC 59.124 41.667 0.00 0.00 0.00 4.20
291 292 5.097742 AGACCCATGTTGATATGTTTCGA 57.902 39.130 0.00 0.00 0.00 3.71
292 293 6.049149 ACTAGACCCATGTTGATATGTTTCG 58.951 40.000 0.00 0.00 0.00 3.46
293 294 7.865706 AACTAGACCCATGTTGATATGTTTC 57.134 36.000 0.00 0.00 0.00 2.78
294 295 8.522830 CAAAACTAGACCCATGTTGATATGTTT 58.477 33.333 0.00 0.00 0.00 2.83
295 296 7.888021 TCAAAACTAGACCCATGTTGATATGTT 59.112 33.333 0.00 0.00 0.00 2.71
296 297 7.402054 TCAAAACTAGACCCATGTTGATATGT 58.598 34.615 0.00 0.00 0.00 2.29
297 298 7.864108 TCAAAACTAGACCCATGTTGATATG 57.136 36.000 0.00 0.00 0.00 1.78
298 299 8.328758 TCTTCAAAACTAGACCCATGTTGATAT 58.671 33.333 0.00 0.00 0.00 1.63
299 300 7.685481 TCTTCAAAACTAGACCCATGTTGATA 58.315 34.615 0.00 0.00 0.00 2.15
300 301 6.542821 TCTTCAAAACTAGACCCATGTTGAT 58.457 36.000 0.00 0.00 0.00 2.57
301 302 5.935945 TCTTCAAAACTAGACCCATGTTGA 58.064 37.500 0.00 0.00 0.00 3.18
302 303 6.656693 AGATCTTCAAAACTAGACCCATGTTG 59.343 38.462 0.00 0.00 0.00 3.33
303 304 6.784031 AGATCTTCAAAACTAGACCCATGTT 58.216 36.000 0.00 0.00 0.00 2.71
304 305 6.380079 AGATCTTCAAAACTAGACCCATGT 57.620 37.500 0.00 0.00 0.00 3.21
305 306 5.521735 CGAGATCTTCAAAACTAGACCCATG 59.478 44.000 0.00 0.00 0.00 3.66
306 307 5.187967 ACGAGATCTTCAAAACTAGACCCAT 59.812 40.000 0.00 0.00 0.00 4.00
307 308 4.527038 ACGAGATCTTCAAAACTAGACCCA 59.473 41.667 0.00 0.00 0.00 4.51
308 309 5.074584 ACGAGATCTTCAAAACTAGACCC 57.925 43.478 0.00 0.00 0.00 4.46
309 310 4.794246 CGACGAGATCTTCAAAACTAGACC 59.206 45.833 0.00 0.00 0.00 3.85
310 311 5.629097 TCGACGAGATCTTCAAAACTAGAC 58.371 41.667 0.00 0.00 0.00 2.59
311 312 5.642491 TCTCGACGAGATCTTCAAAACTAGA 59.358 40.000 23.27 0.00 33.35 2.43
312 313 5.735427 GTCTCGACGAGATCTTCAAAACTAG 59.265 44.000 28.81 0.00 40.98 2.57
313 314 5.629097 GTCTCGACGAGATCTTCAAAACTA 58.371 41.667 28.81 0.33 40.98 2.24
314 315 4.477780 GTCTCGACGAGATCTTCAAAACT 58.522 43.478 28.81 0.00 40.98 2.66
315 316 4.809455 GTCTCGACGAGATCTTCAAAAC 57.191 45.455 28.81 10.84 40.98 2.43
329 330 3.777478 TCACCATTAAATCCGTCTCGAC 58.223 45.455 0.00 0.00 0.00 4.20
330 331 4.459390 TTCACCATTAAATCCGTCTCGA 57.541 40.909 0.00 0.00 0.00 4.04
331 332 5.321516 GTTTTCACCATTAAATCCGTCTCG 58.678 41.667 0.00 0.00 0.00 4.04
332 333 5.321516 CGTTTTCACCATTAAATCCGTCTC 58.678 41.667 0.00 0.00 0.00 3.36
333 334 4.155280 CCGTTTTCACCATTAAATCCGTCT 59.845 41.667 0.00 0.00 0.00 4.18
334 335 4.154556 TCCGTTTTCACCATTAAATCCGTC 59.845 41.667 0.00 0.00 0.00 4.79
335 336 4.073549 TCCGTTTTCACCATTAAATCCGT 58.926 39.130 0.00 0.00 0.00 4.69
336 337 4.688511 TCCGTTTTCACCATTAAATCCG 57.311 40.909 0.00 0.00 0.00 4.18
337 338 7.899178 AAAATCCGTTTTCACCATTAAATCC 57.101 32.000 0.00 0.00 32.14 3.01
345 346 9.685828 CTTCTAATTAAAAATCCGTTTTCACCA 57.314 29.630 0.00 0.00 40.07 4.17
346 347 9.902196 TCTTCTAATTAAAAATCCGTTTTCACC 57.098 29.630 0.00 0.00 40.07 4.02
399 400 6.989659 ACAGATGACATCAGCAAGAATTTTT 58.010 32.000 17.57 0.00 34.14 1.94
400 401 6.585695 ACAGATGACATCAGCAAGAATTTT 57.414 33.333 17.57 0.00 34.14 1.82
401 402 6.208007 TGAACAGATGACATCAGCAAGAATTT 59.792 34.615 17.57 0.00 34.14 1.82
402 403 5.708697 TGAACAGATGACATCAGCAAGAATT 59.291 36.000 17.57 0.00 34.14 2.17
403 404 5.123502 GTGAACAGATGACATCAGCAAGAAT 59.876 40.000 17.57 0.00 34.14 2.40
404 405 4.453478 GTGAACAGATGACATCAGCAAGAA 59.547 41.667 17.57 0.00 34.14 2.52
405 406 3.999001 GTGAACAGATGACATCAGCAAGA 59.001 43.478 17.57 0.00 34.14 3.02
406 407 3.749609 TGTGAACAGATGACATCAGCAAG 59.250 43.478 17.57 4.63 34.14 4.01
407 408 3.742385 TGTGAACAGATGACATCAGCAA 58.258 40.909 17.57 0.00 34.14 3.91
408 409 3.405823 TGTGAACAGATGACATCAGCA 57.594 42.857 17.57 6.80 34.14 4.41
409 410 3.688185 ACATGTGAACAGATGACATCAGC 59.312 43.478 17.57 4.42 35.83 4.26
410 411 4.094442 CCACATGTGAACAGATGACATCAG 59.906 45.833 27.46 11.95 35.83 2.90
411 412 4.004982 CCACATGTGAACAGATGACATCA 58.995 43.478 27.46 0.00 35.83 3.07
412 413 3.181503 GCCACATGTGAACAGATGACATC 60.182 47.826 27.46 7.39 35.83 3.06
413 414 2.751259 GCCACATGTGAACAGATGACAT 59.249 45.455 27.46 0.00 35.83 3.06
414 415 2.153645 GCCACATGTGAACAGATGACA 58.846 47.619 27.46 0.00 35.83 3.58
415 416 2.153645 TGCCACATGTGAACAGATGAC 58.846 47.619 27.46 5.64 35.83 3.06
416 417 2.565046 TGCCACATGTGAACAGATGA 57.435 45.000 27.46 0.00 35.83 2.92
417 418 3.311106 GTTTGCCACATGTGAACAGATG 58.689 45.455 27.46 9.41 37.99 2.90
418 419 2.030893 CGTTTGCCACATGTGAACAGAT 60.031 45.455 27.46 0.00 0.00 2.90
419 420 1.333308 CGTTTGCCACATGTGAACAGA 59.667 47.619 27.46 16.17 0.00 3.41
420 421 1.333308 TCGTTTGCCACATGTGAACAG 59.667 47.619 27.46 17.14 0.00 3.16
421 422 1.333308 CTCGTTTGCCACATGTGAACA 59.667 47.619 27.46 20.52 0.00 3.18
422 423 1.333619 ACTCGTTTGCCACATGTGAAC 59.666 47.619 27.46 20.50 0.00 3.18
423 424 1.333308 CACTCGTTTGCCACATGTGAA 59.667 47.619 27.46 11.60 32.75 3.18
424 425 0.943673 CACTCGTTTGCCACATGTGA 59.056 50.000 27.46 5.15 32.75 3.58
425 426 0.040157 CCACTCGTTTGCCACATGTG 60.040 55.000 19.31 19.31 0.00 3.21
426 427 0.465460 ACCACTCGTTTGCCACATGT 60.465 50.000 0.00 0.00 0.00 3.21
427 428 1.518325 TACCACTCGTTTGCCACATG 58.482 50.000 0.00 0.00 0.00 3.21
428 429 2.264005 TTACCACTCGTTTGCCACAT 57.736 45.000 0.00 0.00 0.00 3.21
429 430 1.944024 CTTTACCACTCGTTTGCCACA 59.056 47.619 0.00 0.00 0.00 4.17
430 431 1.265905 CCTTTACCACTCGTTTGCCAC 59.734 52.381 0.00 0.00 0.00 5.01
431 432 1.141254 TCCTTTACCACTCGTTTGCCA 59.859 47.619 0.00 0.00 0.00 4.92
432 433 1.804748 CTCCTTTACCACTCGTTTGCC 59.195 52.381 0.00 0.00 0.00 4.52
433 434 1.804748 CCTCCTTTACCACTCGTTTGC 59.195 52.381 0.00 0.00 0.00 3.68
434 435 1.804748 GCCTCCTTTACCACTCGTTTG 59.195 52.381 0.00 0.00 0.00 2.93
435 436 1.607251 CGCCTCCTTTACCACTCGTTT 60.607 52.381 0.00 0.00 0.00 3.60
436 437 0.037605 CGCCTCCTTTACCACTCGTT 60.038 55.000 0.00 0.00 0.00 3.85
437 438 1.183676 ACGCCTCCTTTACCACTCGT 61.184 55.000 0.00 0.00 0.00 4.18
438 439 0.736325 CACGCCTCCTTTACCACTCG 60.736 60.000 0.00 0.00 0.00 4.18
439 440 0.320697 ACACGCCTCCTTTACCACTC 59.679 55.000 0.00 0.00 0.00 3.51
440 441 0.034896 CACACGCCTCCTTTACCACT 59.965 55.000 0.00 0.00 0.00 4.00
441 442 0.953960 CCACACGCCTCCTTTACCAC 60.954 60.000 0.00 0.00 0.00 4.16
442 443 1.122632 TCCACACGCCTCCTTTACCA 61.123 55.000 0.00 0.00 0.00 3.25
443 444 0.035739 TTCCACACGCCTCCTTTACC 59.964 55.000 0.00 0.00 0.00 2.85
444 445 1.886886 TTTCCACACGCCTCCTTTAC 58.113 50.000 0.00 0.00 0.00 2.01
445 446 2.642154 TTTTCCACACGCCTCCTTTA 57.358 45.000 0.00 0.00 0.00 1.85
446 447 1.681264 CTTTTTCCACACGCCTCCTTT 59.319 47.619 0.00 0.00 0.00 3.11
447 448 1.133915 TCTTTTTCCACACGCCTCCTT 60.134 47.619 0.00 0.00 0.00 3.36
448 449 0.472471 TCTTTTTCCACACGCCTCCT 59.528 50.000 0.00 0.00 0.00 3.69
449 450 0.875059 CTCTTTTTCCACACGCCTCC 59.125 55.000 0.00 0.00 0.00 4.30
450 451 1.531578 GTCTCTTTTTCCACACGCCTC 59.468 52.381 0.00 0.00 0.00 4.70
451 452 1.594331 GTCTCTTTTTCCACACGCCT 58.406 50.000 0.00 0.00 0.00 5.52
452 453 0.591659 GGTCTCTTTTTCCACACGCC 59.408 55.000 0.00 0.00 0.00 5.68
453 454 0.234884 CGGTCTCTTTTTCCACACGC 59.765 55.000 0.00 0.00 0.00 5.34
454 455 1.860676 TCGGTCTCTTTTTCCACACG 58.139 50.000 0.00 0.00 0.00 4.49
455 456 2.031944 GCTTCGGTCTCTTTTTCCACAC 60.032 50.000 0.00 0.00 0.00 3.82
456 457 2.218603 GCTTCGGTCTCTTTTTCCACA 58.781 47.619 0.00 0.00 0.00 4.17
457 458 2.218603 TGCTTCGGTCTCTTTTTCCAC 58.781 47.619 0.00 0.00 0.00 4.02
458 459 2.631160 TGCTTCGGTCTCTTTTTCCA 57.369 45.000 0.00 0.00 0.00 3.53
885 886 4.465446 TGGAGGGAGGAGGAGCGG 62.465 72.222 0.00 0.00 0.00 5.52
1048 1049 2.048127 AAGAACCTGCTCGGCGAC 60.048 61.111 4.99 3.81 35.61 5.19
1159 1160 3.066190 TAGTCCCTCACCGCCACG 61.066 66.667 0.00 0.00 0.00 4.94
1257 1258 0.548989 AGTACAAGTGCCACACCCAA 59.451 50.000 0.00 0.00 34.49 4.12
1283 1284 7.778083 TCAAGTTCAGTCTTAGACAACACTAA 58.222 34.615 15.23 2.91 34.60 2.24
1416 1417 7.882791 ACACATGATGAACTAATAACAGGTGAA 59.117 33.333 14.61 0.00 40.67 3.18
1480 1481 6.148811 ACAAAACTCAGACAATATTACCACCG 59.851 38.462 0.00 0.00 0.00 4.94
1609 1610 2.238898 TCCTAAGGCCCTTTACTTCTGC 59.761 50.000 0.00 0.00 0.00 4.26
1686 1687 8.331022 GCCACAGATATGATATAATAACTTGCG 58.669 37.037 0.00 0.00 0.00 4.85
1975 1999 8.607459 CAGAGAAGAAGCGAAAATGTATGTATT 58.393 33.333 0.00 0.00 0.00 1.89
2071 2098 1.719780 GCAGTCAAAGGAACGTAGACG 59.280 52.381 0.00 0.00 46.33 4.18
2254 2282 3.068024 TCTGGCCAAGCTTTTTACACAAG 59.932 43.478 7.01 0.00 0.00 3.16
2256 2284 2.660572 TCTGGCCAAGCTTTTTACACA 58.339 42.857 7.01 0.00 0.00 3.72
2257 2285 3.726291 TTCTGGCCAAGCTTTTTACAC 57.274 42.857 7.01 0.00 0.00 2.90
2259 2287 4.218417 TGAGATTCTGGCCAAGCTTTTTAC 59.782 41.667 7.01 0.00 0.00 2.01
2261 2289 3.233507 TGAGATTCTGGCCAAGCTTTTT 58.766 40.909 7.01 0.00 0.00 1.94
2262 2290 2.880443 TGAGATTCTGGCCAAGCTTTT 58.120 42.857 7.01 0.00 0.00 2.27
2314 2342 2.525368 GGGCCAACCTGTAAAATCAGT 58.475 47.619 4.39 0.00 35.85 3.41
2389 2417 4.306600 CCTCAAAAGGATTTCCAAAACCG 58.693 43.478 0.00 0.00 46.67 4.44
2420 2448 2.434359 GCCAGTACGACCAGTGCC 60.434 66.667 0.00 0.00 35.99 5.01
2421 2449 2.809601 CGCCAGTACGACCAGTGC 60.810 66.667 0.00 0.00 35.57 4.40
2423 2451 1.255667 ATTCCGCCAGTACGACCAGT 61.256 55.000 0.00 0.00 34.06 4.00
2478 2506 9.292195 CTGGGACCTAAAATAAAAACAGTAGAA 57.708 33.333 0.00 0.00 0.00 2.10
2566 2595 7.952671 TCCAGACGATATAACTATTTCTGCTT 58.047 34.615 0.00 0.00 31.98 3.91
2580 2609 8.970859 AAGATGAAAGATTTTCCAGACGATAT 57.029 30.769 0.00 0.00 0.00 1.63
2581 2610 8.668353 CAAAGATGAAAGATTTTCCAGACGATA 58.332 33.333 0.00 0.00 0.00 2.92
2587 2616 7.900782 ATTGCAAAGATGAAAGATTTTCCAG 57.099 32.000 1.71 0.00 0.00 3.86
2606 2636 3.638160 AGCTCCAGAAACTGAAAATTGCA 59.362 39.130 0.00 0.00 32.44 4.08
2824 2864 7.441890 TCTGTTCAGTGTCAAGTAAAACAAA 57.558 32.000 0.00 0.00 0.00 2.83
2825 2865 7.335673 TCATCTGTTCAGTGTCAAGTAAAACAA 59.664 33.333 0.00 0.00 0.00 2.83
2826 2866 6.821160 TCATCTGTTCAGTGTCAAGTAAAACA 59.179 34.615 0.00 0.00 0.00 2.83
2827 2867 7.246674 TCATCTGTTCAGTGTCAAGTAAAAC 57.753 36.000 0.00 0.00 0.00 2.43
2828 2868 7.857734 TTCATCTGTTCAGTGTCAAGTAAAA 57.142 32.000 0.00 0.00 0.00 1.52
2829 2869 8.450578 AATTCATCTGTTCAGTGTCAAGTAAA 57.549 30.769 0.00 0.00 0.00 2.01
2830 2870 8.450578 AAATTCATCTGTTCAGTGTCAAGTAA 57.549 30.769 0.00 0.00 0.00 2.24
2831 2871 8.450578 AAAATTCATCTGTTCAGTGTCAAGTA 57.549 30.769 0.00 0.00 0.00 2.24
2832 2872 6.949352 AAATTCATCTGTTCAGTGTCAAGT 57.051 33.333 0.00 0.00 0.00 3.16
2833 2873 7.590322 CAGAAAATTCATCTGTTCAGTGTCAAG 59.410 37.037 11.30 0.00 39.54 3.02
2834 2874 7.420002 CAGAAAATTCATCTGTTCAGTGTCAA 58.580 34.615 11.30 0.00 39.54 3.18
2835 2875 6.962686 CAGAAAATTCATCTGTTCAGTGTCA 58.037 36.000 11.30 0.00 39.54 3.58
2897 2937 5.936956 ACAAAGAAAGCAGAGGTCAGATTAG 59.063 40.000 0.00 0.00 0.00 1.73
2906 2946 3.181483 ACAGCAAACAAAGAAAGCAGAGG 60.181 43.478 0.00 0.00 0.00 3.69
2914 2954 4.462483 AGGAACTTCACAGCAAACAAAGAA 59.538 37.500 0.00 0.00 27.25 2.52
3015 3055 5.430886 TGCAATTCAAAGAGCAGAGCTATA 58.569 37.500 0.00 0.00 39.88 1.31
3026 3066 9.585099 GGATTACATGTAATTGCAATTCAAAGA 57.415 29.630 27.28 10.13 38.34 2.52
3158 3198 5.472478 TGGTAAATGGTAAAATACACGTGCA 59.528 36.000 17.22 2.06 0.00 4.57
3332 3372 5.815581 ACTAAATAGAATGTGCTGGTGGAA 58.184 37.500 0.00 0.00 0.00 3.53
3336 3376 9.113838 CTTGATAACTAAATAGAATGTGCTGGT 57.886 33.333 0.00 0.00 0.00 4.00
3402 3442 5.314923 TCTGCCAGCATTAGATGAAAAAC 57.685 39.130 0.00 0.00 31.30 2.43
3403 3443 5.163488 CCATCTGCCAGCATTAGATGAAAAA 60.163 40.000 17.30 0.00 46.71 1.94
3404 3444 4.340097 CCATCTGCCAGCATTAGATGAAAA 59.660 41.667 17.30 0.00 46.71 2.29
3405 3445 3.887110 CCATCTGCCAGCATTAGATGAAA 59.113 43.478 17.30 0.00 46.71 2.69
3406 3446 3.117776 ACCATCTGCCAGCATTAGATGAA 60.118 43.478 17.30 0.00 46.71 2.57
3407 3447 2.440627 ACCATCTGCCAGCATTAGATGA 59.559 45.455 17.30 1.61 46.71 2.92
3528 3568 7.698836 AGCTGTTTTTACTTTATTGCAACTG 57.301 32.000 0.00 0.00 0.00 3.16
3529 3569 8.716646 AAAGCTGTTTTTACTTTATTGCAACT 57.283 26.923 0.00 0.00 32.05 3.16
3530 3570 8.061857 GGAAAGCTGTTTTTACTTTATTGCAAC 58.938 33.333 0.00 0.00 33.91 4.17
3531 3571 7.043059 CGGAAAGCTGTTTTTACTTTATTGCAA 60.043 33.333 0.00 0.00 33.91 4.08
3532 3572 6.419413 CGGAAAGCTGTTTTTACTTTATTGCA 59.581 34.615 0.00 0.00 33.91 4.08
3533 3573 6.639279 TCGGAAAGCTGTTTTTACTTTATTGC 59.361 34.615 0.00 0.00 33.91 3.56
3534 3574 8.638565 CATCGGAAAGCTGTTTTTACTTTATTG 58.361 33.333 0.00 0.00 33.91 1.90
3535 3575 8.357402 ACATCGGAAAGCTGTTTTTACTTTATT 58.643 29.630 0.00 0.00 33.91 1.40
3536 3576 7.882179 ACATCGGAAAGCTGTTTTTACTTTAT 58.118 30.769 0.00 0.00 33.91 1.40
3537 3577 7.266922 ACATCGGAAAGCTGTTTTTACTTTA 57.733 32.000 0.00 0.00 33.91 1.85
3538 3578 6.144078 ACATCGGAAAGCTGTTTTTACTTT 57.856 33.333 0.00 0.00 36.37 2.66
3539 3579 5.767816 ACATCGGAAAGCTGTTTTTACTT 57.232 34.783 0.00 0.00 0.00 2.24
3540 3580 5.106673 GCTACATCGGAAAGCTGTTTTTACT 60.107 40.000 0.00 0.00 33.40 2.24
3541 3581 5.086727 GCTACATCGGAAAGCTGTTTTTAC 58.913 41.667 0.00 0.00 33.40 2.01
3542 3582 4.757657 TGCTACATCGGAAAGCTGTTTTTA 59.242 37.500 10.44 0.00 37.16 1.52
3543 3583 3.568007 TGCTACATCGGAAAGCTGTTTTT 59.432 39.130 10.44 0.00 37.16 1.94
3544 3584 3.058224 GTGCTACATCGGAAAGCTGTTTT 60.058 43.478 10.44 0.00 37.16 2.43
3545 3585 2.484264 GTGCTACATCGGAAAGCTGTTT 59.516 45.455 10.44 0.00 37.16 2.83
3546 3586 2.076863 GTGCTACATCGGAAAGCTGTT 58.923 47.619 10.44 0.00 37.16 3.16
3547 3587 1.001974 TGTGCTACATCGGAAAGCTGT 59.998 47.619 10.44 0.00 37.16 4.40
3589 3630 5.665916 ATGGTCAACTTTCCCAATGATTC 57.334 39.130 0.00 0.00 0.00 2.52
3597 3638 4.082949 CCTTAACGAATGGTCAACTTTCCC 60.083 45.833 0.00 0.00 31.43 3.97
3627 3668 9.561069 TTGTTCAAAATAAGAAGCTTCTCTAGT 57.439 29.630 28.58 17.98 36.28 2.57
3691 3734 7.206789 TCCATTTATTCTGGTCATCTGGTTA 57.793 36.000 0.00 0.00 35.19 2.85
3785 3828 6.323203 TCAGTACACACTAAAGAGTACACC 57.677 41.667 0.00 0.00 39.33 4.16
3892 3937 9.632638 ACTAATGTATGATAGGAAGCAACATTT 57.367 29.630 3.45 0.00 35.87 2.32
3917 3963 6.992063 ATCATCAGTCTTCACATTAACCAC 57.008 37.500 0.00 0.00 0.00 4.16
4183 4229 3.977427 CATGCAGAATCATGTCCAATGG 58.023 45.455 0.00 0.00 39.10 3.16
4307 4353 4.091509 CAGAAATACCAAACGAGAAGACGG 59.908 45.833 0.00 0.00 37.61 4.79
4451 4497 2.805671 TGCAACAATTACCTGAGTCACG 59.194 45.455 0.00 0.00 0.00 4.35
4554 4602 1.804151 GCGCACAGAGGTACAATTTCA 59.196 47.619 0.30 0.00 0.00 2.69
5037 5124 4.213482 ACGAGCAAAAGATAAACAGTCCAC 59.787 41.667 0.00 0.00 0.00 4.02
5457 5573 6.628844 GCAAAAGGGAATGCATCAGTTATTCT 60.629 38.462 0.00 0.00 42.12 2.40
5984 6104 3.112126 GATGCCGCCAACCGTCATG 62.112 63.158 0.00 0.00 35.41 3.07
5985 6105 2.819984 AAGATGCCGCCAACCGTCAT 62.820 55.000 0.00 0.00 38.37 3.06
5986 6106 3.545124 AAGATGCCGCCAACCGTCA 62.545 57.895 0.00 0.00 34.38 4.35
5987 6107 2.746277 AAGATGCCGCCAACCGTC 60.746 61.111 0.00 0.00 34.38 4.79
5988 6108 2.457743 TACAAGATGCCGCCAACCGT 62.458 55.000 0.00 0.00 34.38 4.83
6021 6141 8.988934 GTGTGTCTCTAAAACATAACAAGATCA 58.011 33.333 0.00 0.00 0.00 2.92
6022 6142 9.209175 AGTGTGTCTCTAAAACATAACAAGATC 57.791 33.333 0.00 0.00 0.00 2.75
6023 6143 8.993121 CAGTGTGTCTCTAAAACATAACAAGAT 58.007 33.333 0.00 0.00 0.00 2.40
6024 6144 8.201464 TCAGTGTGTCTCTAAAACATAACAAGA 58.799 33.333 0.00 0.00 0.00 3.02
6086 6207 0.672401 TTCGAATGCGGAAGTGTCCC 60.672 55.000 0.00 0.00 41.44 4.46
6088 6209 1.529438 TGTTTCGAATGCGGAAGTGTC 59.471 47.619 0.00 0.00 35.26 3.67
6090 6211 2.679355 TTGTTTCGAATGCGGAAGTG 57.321 45.000 0.00 0.00 35.26 3.16
6092 6213 4.663889 GCAAAATTGTTTCGAATGCGGAAG 60.664 41.667 0.00 0.00 35.26 3.46
6095 6216 2.730928 AGCAAAATTGTTTCGAATGCGG 59.269 40.909 10.90 0.00 37.40 5.69
6096 6217 3.478598 CGAGCAAAATTGTTTCGAATGCG 60.479 43.478 10.90 0.00 38.63 4.73
6102 6223 3.121696 GCAGAACGAGCAAAATTGTTTCG 60.122 43.478 15.54 15.54 40.55 3.46
6119 6240 4.269183 TCTTGAAACCACTGAAAGCAGAA 58.731 39.130 0.00 0.00 45.17 3.02
6130 6251 5.049828 CCAAATCCAAACTCTTGAAACCAC 58.950 41.667 0.00 0.00 34.14 4.16
6137 6258 5.520376 AACTGTCCAAATCCAAACTCTTG 57.480 39.130 0.00 0.00 0.00 3.02
6138 6259 6.544928 AAAACTGTCCAAATCCAAACTCTT 57.455 33.333 0.00 0.00 0.00 2.85
6165 6287 2.158475 ACAACCACAAGGATGACCACAT 60.158 45.455 0.00 0.00 39.92 3.21
6166 6288 1.214175 ACAACCACAAGGATGACCACA 59.786 47.619 0.00 0.00 39.92 4.17
6168 6290 1.214175 ACACAACCACAAGGATGACCA 59.786 47.619 0.00 0.00 39.92 4.02
6169 6291 1.880027 GACACAACCACAAGGATGACC 59.120 52.381 0.00 0.00 39.92 4.02
6170 6292 2.851195 AGACACAACCACAAGGATGAC 58.149 47.619 0.00 0.00 39.92 3.06
6171 6293 3.576078 AAGACACAACCACAAGGATGA 57.424 42.857 0.00 0.00 39.92 2.92
6172 6294 3.885297 AGAAAGACACAACCACAAGGATG 59.115 43.478 0.00 0.00 42.95 3.51
6174 6296 3.278574 CAGAAAGACACAACCACAAGGA 58.721 45.455 0.00 0.00 38.69 3.36
6179 6319 3.279434 AGTTCCAGAAAGACACAACCAC 58.721 45.455 0.00 0.00 0.00 4.16
6185 6325 3.304928 CCATGCAAGTTCCAGAAAGACAC 60.305 47.826 0.00 0.00 0.00 3.67
6189 6329 4.326504 AAACCATGCAAGTTCCAGAAAG 57.673 40.909 6.00 0.00 0.00 2.62
6190 6330 4.161189 TGAAAACCATGCAAGTTCCAGAAA 59.839 37.500 6.00 0.00 0.00 2.52
6209 6349 9.421806 CATTACAAATATTGGAGTTTGCTGAAA 57.578 29.630 0.00 0.00 38.54 2.69
6213 6353 6.155049 AGCCATTACAAATATTGGAGTTTGCT 59.845 34.615 0.00 0.00 38.54 3.91
6215 6355 6.757947 CCAGCCATTACAAATATTGGAGTTTG 59.242 38.462 0.00 0.00 40.29 2.93
6219 6359 6.906157 ATCCAGCCATTACAAATATTGGAG 57.094 37.500 0.00 0.00 36.95 3.86
6226 6564 4.336433 CACGAGAATCCAGCCATTACAAAT 59.664 41.667 0.00 0.00 0.00 2.32
6227 6565 3.689161 CACGAGAATCCAGCCATTACAAA 59.311 43.478 0.00 0.00 0.00 2.83
6240 6578 4.859798 GGAACATCGATATCCACGAGAATC 59.140 45.833 19.48 2.42 42.81 2.52
6247 6585 5.010719 TCCAGTTAGGAACATCGATATCCAC 59.989 44.000 23.92 16.73 45.65 4.02
6272 6610 7.461107 CCGTGTCGATATGAATTACAAAAACT 58.539 34.615 2.52 0.00 0.00 2.66
6276 6614 4.870991 TGCCGTGTCGATATGAATTACAAA 59.129 37.500 2.52 0.00 0.00 2.83
6287 6625 2.063266 GTTCTTTGTGCCGTGTCGATA 58.937 47.619 0.00 0.00 0.00 2.92
6288 6626 0.865769 GTTCTTTGTGCCGTGTCGAT 59.134 50.000 0.00 0.00 0.00 3.59
6289 6627 0.460459 TGTTCTTTGTGCCGTGTCGA 60.460 50.000 0.00 0.00 0.00 4.20
6290 6628 0.586319 ATGTTCTTTGTGCCGTGTCG 59.414 50.000 0.00 0.00 0.00 4.35
6291 6629 2.774439 AATGTTCTTTGTGCCGTGTC 57.226 45.000 0.00 0.00 0.00 3.67
6292 6630 2.425312 TCAAATGTTCTTTGTGCCGTGT 59.575 40.909 0.00 0.00 0.00 4.49
6293 6631 3.044986 CTCAAATGTTCTTTGTGCCGTG 58.955 45.455 0.00 0.00 0.00 4.94
6294 6632 2.543653 GCTCAAATGTTCTTTGTGCCGT 60.544 45.455 11.62 0.00 40.78 5.68
6295 6633 2.053627 GCTCAAATGTTCTTTGTGCCG 58.946 47.619 11.62 0.00 40.78 5.69
6296 6634 3.096489 TGCTCAAATGTTCTTTGTGCC 57.904 42.857 17.14 5.39 43.92 5.01
6297 6635 5.662211 AATTGCTCAAATGTTCTTTGTGC 57.338 34.783 14.45 14.45 44.45 4.57
6298 6636 7.686519 TCAAAATTGCTCAAATGTTCTTTGTG 58.313 30.769 0.00 0.00 29.87 3.33
6299 6637 7.765360 TCTCAAAATTGCTCAAATGTTCTTTGT 59.235 29.630 0.00 0.00 29.87 2.83
6300 6638 8.133754 TCTCAAAATTGCTCAAATGTTCTTTG 57.866 30.769 0.00 0.00 0.00 2.77
6301 6639 8.606602 GTTCTCAAAATTGCTCAAATGTTCTTT 58.393 29.630 0.00 0.00 0.00 2.52
6302 6640 7.225341 GGTTCTCAAAATTGCTCAAATGTTCTT 59.775 33.333 0.00 0.00 0.00 2.52
6336 6674 2.536066 TGGATTCTTCCTCCGTTCAGA 58.464 47.619 0.00 0.00 43.07 3.27
6337 6675 3.550437 ATGGATTCTTCCTCCGTTCAG 57.450 47.619 0.00 0.00 43.07 3.02
6338 6676 3.009033 ACAATGGATTCTTCCTCCGTTCA 59.991 43.478 0.00 0.00 43.07 3.18
6339 6677 3.375299 CACAATGGATTCTTCCTCCGTTC 59.625 47.826 0.00 0.00 43.07 3.95
6340 6678 3.244911 ACACAATGGATTCTTCCTCCGTT 60.245 43.478 0.00 0.00 43.07 4.44
6341 6679 2.305927 ACACAATGGATTCTTCCTCCGT 59.694 45.455 0.00 0.00 43.07 4.69
6342 6680 2.679837 CACACAATGGATTCTTCCTCCG 59.320 50.000 0.00 0.00 43.07 4.63
6355 6693 1.538512 CAAGGTCTCAGCCACACAATG 59.461 52.381 0.00 0.00 0.00 2.82
6359 6697 0.603975 GTCCAAGGTCTCAGCCACAC 60.604 60.000 0.00 0.00 0.00 3.82
6368 6706 1.371558 GACCAAGCGTCCAAGGTCT 59.628 57.895 0.00 0.00 45.46 3.85
6372 6710 1.001406 AGAAGAGACCAAGCGTCCAAG 59.999 52.381 0.00 0.00 43.08 3.61
6373 6711 1.000955 GAGAAGAGACCAAGCGTCCAA 59.999 52.381 0.00 0.00 43.08 3.53
6384 6722 1.140804 GGGCAGCGAGAGAAGAGAC 59.859 63.158 0.00 0.00 0.00 3.36
6387 6725 0.615331 AATTGGGCAGCGAGAGAAGA 59.385 50.000 0.00 0.00 0.00 2.87
6389 6727 0.615331 AGAATTGGGCAGCGAGAGAA 59.385 50.000 0.00 0.00 0.00 2.87
6405 6743 3.244561 GGAAGATGAGGTTGTGGACAGAA 60.245 47.826 0.00 0.00 0.00 3.02
6416 6754 3.197927 ACAAGGAGAGGAAGATGAGGT 57.802 47.619 0.00 0.00 0.00 3.85
6427 6765 6.159988 ACAGAAAATTCTCGTACAAGGAGAG 58.840 40.000 0.00 0.00 39.85 3.20
6428 6766 6.097915 ACAGAAAATTCTCGTACAAGGAGA 57.902 37.500 0.00 0.00 37.35 3.71
6445 6783 4.284746 ACCACCAACCAAAAAGAACAGAAA 59.715 37.500 0.00 0.00 0.00 2.52
6446 6784 3.835395 ACCACCAACCAAAAAGAACAGAA 59.165 39.130 0.00 0.00 0.00 3.02
6448 6786 3.885724 ACCACCAACCAAAAAGAACAG 57.114 42.857 0.00 0.00 0.00 3.16
6450 6788 2.675844 GCAACCACCAACCAAAAAGAAC 59.324 45.455 0.00 0.00 0.00 3.01
6451 6789 2.303022 TGCAACCACCAACCAAAAAGAA 59.697 40.909 0.00 0.00 0.00 2.52
6452 6790 1.902508 TGCAACCACCAACCAAAAAGA 59.097 42.857 0.00 0.00 0.00 2.52
6489 6831 0.318441 GCATCCTGCTCCTATACGCA 59.682 55.000 0.00 0.00 40.96 5.24
6501 6843 1.597302 CATCGGCCTCAGCATCCTG 60.597 63.158 0.00 0.00 42.56 3.86
6618 6960 1.593209 GTCGGCGAAGGTGTTGACA 60.593 57.895 12.92 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.