Multiple sequence alignment - TraesCS7D01G045500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G045500 chr7D 100.000 4324 0 0 1 4324 22942915 22947238 0.000000e+00 7986.0
1 TraesCS7D01G045500 chr7D 98.738 3327 41 1 999 4324 22974896 22971570 0.000000e+00 5910.0
2 TraesCS7D01G045500 chr7D 85.116 2244 283 33 1111 3336 22904421 22906631 0.000000e+00 2246.0
3 TraesCS7D01G045500 chr7D 91.608 143 2 3 736 870 22975098 22974958 5.710000e-44 189.0
4 TraesCS7D01G045500 chr7D 96.296 81 3 0 721 801 22978245 22978165 2.710000e-27 134.0
5 TraesCS7D01G045500 chr7A 94.065 3117 113 34 702 3793 23385905 23388974 0.000000e+00 4665.0
6 TraesCS7D01G045500 chr7A 93.862 2851 118 24 723 3542 23523720 23520896 0.000000e+00 4242.0
7 TraesCS7D01G045500 chr7A 84.934 2290 297 29 1099 3367 23354751 23357013 0.000000e+00 2274.0
8 TraesCS7D01G045500 chr7A 96.786 529 12 2 3801 4324 23389239 23389767 0.000000e+00 878.0
9 TraesCS7D01G045500 chr7A 100.000 30 0 0 3540 3569 23357128 23357157 6.040000e-04 56.5
10 TraesCS7D01G045500 chr4A 93.298 3059 154 25 750 3793 706839017 706835995 0.000000e+00 4466.0
11 TraesCS7D01G045500 chr4A 95.532 2126 84 3 992 3109 706706713 706708835 0.000000e+00 3389.0
12 TraesCS7D01G045500 chr4A 96.212 528 14 2 3801 4324 706835730 706835205 0.000000e+00 859.0
13 TraesCS7D01G045500 chr4A 90.654 535 50 0 119 653 658185675 658186209 0.000000e+00 712.0
14 TraesCS7D01G045500 chr4A 85.351 669 89 5 1099 1764 706657988 706657326 0.000000e+00 684.0
15 TraesCS7D01G045500 chrUn 96.245 2610 58 15 999 3582 89917648 89915053 0.000000e+00 4241.0
16 TraesCS7D01G045500 chrUn 96.245 2610 58 15 999 3582 89979660 89982255 0.000000e+00 4241.0
17 TraesCS7D01G045500 chrUn 91.608 143 2 3 736 870 89917850 89917710 5.710000e-44 189.0
18 TraesCS7D01G045500 chrUn 91.096 146 3 3 733 870 89979455 89979598 5.710000e-44 189.0
19 TraesCS7D01G045500 chr5D 91.938 1749 94 18 893 2616 361184201 361182475 0.000000e+00 2405.0
20 TraesCS7D01G045500 chr5D 91.402 535 46 0 119 653 398418516 398419050 0.000000e+00 734.0
21 TraesCS7D01G045500 chr5D 93.197 147 10 0 702 848 361184924 361184778 2.620000e-52 217.0
22 TraesCS7D01G045500 chr5A 85.968 2252 288 19 1099 3343 41953840 41956070 0.000000e+00 2383.0
23 TraesCS7D01G045500 chr3D 91.850 638 52 0 16 653 563693058 563693695 0.000000e+00 891.0
24 TraesCS7D01G045500 chr3D 92.710 535 39 0 119 653 85414146 85413612 0.000000e+00 773.0
25 TraesCS7D01G045500 chr3D 89.910 555 51 2 101 653 29805590 29805039 0.000000e+00 710.0
26 TraesCS7D01G045500 chr3D 88.969 553 58 1 101 653 38631969 38632518 0.000000e+00 680.0
27 TraesCS7D01G045500 chr3D 93.023 86 6 0 1 86 29805786 29805701 4.540000e-25 126.0
28 TraesCS7D01G045500 chr3D 90.698 86 7 1 1 86 38631775 38631859 3.530000e-21 113.0
29 TraesCS7D01G045500 chr3B 89.512 553 58 0 101 653 119058256 119058808 0.000000e+00 701.0
30 TraesCS7D01G045500 chr3B 94.186 86 4 1 1 86 119058062 119058146 3.510000e-26 130.0
31 TraesCS7D01G045500 chr3B 91.860 86 6 1 1 86 818186629 818186713 7.600000e-23 119.0
32 TraesCS7D01G045500 chr3B 93.151 73 5 0 14 86 736736890 736736962 1.640000e-19 108.0
33 TraesCS7D01G045500 chr4B 88.809 554 59 2 101 653 664434239 664433688 0.000000e+00 676.0
34 TraesCS7D01G045500 chr2D 88.628 554 60 2 102 653 19678249 19678801 0.000000e+00 671.0
35 TraesCS7D01G045500 chr2D 91.860 86 7 0 1 86 19678053 19678138 2.110000e-23 121.0
36 TraesCS7D01G045500 chr1D 91.860 86 6 1 1 86 72431060 72430976 7.600000e-23 119.0
37 TraesCS7D01G045500 chr3A 89.535 86 8 1 1 86 40393254 40393170 1.640000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G045500 chr7D 22942915 22947238 4323 False 7986.000000 7986 100.000000 1 4324 1 chr7D.!!$F2 4323
1 TraesCS7D01G045500 chr7D 22904421 22906631 2210 False 2246.000000 2246 85.116000 1111 3336 1 chr7D.!!$F1 2225
2 TraesCS7D01G045500 chr7D 22971570 22978245 6675 True 2077.666667 5910 95.547333 721 4324 3 chr7D.!!$R1 3603
3 TraesCS7D01G045500 chr7A 23520896 23523720 2824 True 4242.000000 4242 93.862000 723 3542 1 chr7A.!!$R1 2819
4 TraesCS7D01G045500 chr7A 23385905 23389767 3862 False 2771.500000 4665 95.425500 702 4324 2 chr7A.!!$F2 3622
5 TraesCS7D01G045500 chr7A 23354751 23357157 2406 False 1165.250000 2274 92.467000 1099 3569 2 chr7A.!!$F1 2470
6 TraesCS7D01G045500 chr4A 706706713 706708835 2122 False 3389.000000 3389 95.532000 992 3109 1 chr4A.!!$F2 2117
7 TraesCS7D01G045500 chr4A 706835205 706839017 3812 True 2662.500000 4466 94.755000 750 4324 2 chr4A.!!$R2 3574
8 TraesCS7D01G045500 chr4A 658185675 658186209 534 False 712.000000 712 90.654000 119 653 1 chr4A.!!$F1 534
9 TraesCS7D01G045500 chr4A 706657326 706657988 662 True 684.000000 684 85.351000 1099 1764 1 chr4A.!!$R1 665
10 TraesCS7D01G045500 chrUn 89915053 89917850 2797 True 2215.000000 4241 93.926500 736 3582 2 chrUn.!!$R1 2846
11 TraesCS7D01G045500 chrUn 89979455 89982255 2800 False 2215.000000 4241 93.670500 733 3582 2 chrUn.!!$F1 2849
12 TraesCS7D01G045500 chr5D 361182475 361184924 2449 True 1311.000000 2405 92.567500 702 2616 2 chr5D.!!$R1 1914
13 TraesCS7D01G045500 chr5D 398418516 398419050 534 False 734.000000 734 91.402000 119 653 1 chr5D.!!$F1 534
14 TraesCS7D01G045500 chr5A 41953840 41956070 2230 False 2383.000000 2383 85.968000 1099 3343 1 chr5A.!!$F1 2244
15 TraesCS7D01G045500 chr3D 563693058 563693695 637 False 891.000000 891 91.850000 16 653 1 chr3D.!!$F1 637
16 TraesCS7D01G045500 chr3D 85413612 85414146 534 True 773.000000 773 92.710000 119 653 1 chr3D.!!$R1 534
17 TraesCS7D01G045500 chr3D 29805039 29805786 747 True 418.000000 710 91.466500 1 653 2 chr3D.!!$R2 652
18 TraesCS7D01G045500 chr3D 38631775 38632518 743 False 396.500000 680 89.833500 1 653 2 chr3D.!!$F2 652
19 TraesCS7D01G045500 chr3B 119058062 119058808 746 False 415.500000 701 91.849000 1 653 2 chr3B.!!$F3 652
20 TraesCS7D01G045500 chr4B 664433688 664434239 551 True 676.000000 676 88.809000 101 653 1 chr4B.!!$R1 552
21 TraesCS7D01G045500 chr2D 19678053 19678801 748 False 396.000000 671 90.244000 1 653 2 chr2D.!!$F1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 783 0.036671 TGCCATGACAGTGAGCTCAG 60.037 55.0 18.89 9.24 0.00 3.35 F
690 791 0.248417 CAGTGAGCTCAGATCGGACG 60.248 60.0 18.89 0.00 0.00 4.79 F
691 792 0.393132 AGTGAGCTCAGATCGGACGA 60.393 55.0 18.89 0.00 0.00 4.20 F
692 793 0.665835 GTGAGCTCAGATCGGACGAT 59.334 55.0 18.89 6.95 37.59 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2165 6002 2.362397 TCTCTCATGCAATCGGTCTACC 59.638 50.000 0.0 0.0 0.0 3.18 R
3053 7256 3.258228 CATGTACTTACCATGTCGTGCA 58.742 45.455 0.0 0.0 0.0 4.57 R
3285 7495 4.821532 ATTTCAGCCCCTTCCTATCATT 57.178 40.909 0.0 0.0 0.0 2.57 R
3448 7675 9.632638 ACCATTTTGCTACAGATAATGAATACT 57.367 29.630 0.0 0.0 0.0 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 216 2.347731 GGGGTCGATGAGAGTTGTTTC 58.652 52.381 0.00 0.00 0.00 2.78
168 267 1.084370 GGTCAATCTGGGCGAGTTCG 61.084 60.000 0.00 0.00 43.27 3.95
170 269 0.320374 TCAATCTGGGCGAGTTCGTT 59.680 50.000 3.27 0.00 42.22 3.85
199 298 0.110238 ACATTTGTCACGCACGATGC 60.110 50.000 0.00 0.00 40.69 3.91
243 344 3.242248 CCGAAAGTCGAAATATCCGTGAC 59.758 47.826 0.00 0.00 43.74 3.67
247 348 6.197655 CGAAAGTCGAAATATCCGTGACATAA 59.802 38.462 0.00 0.00 43.74 1.90
358 459 2.885644 CGATGGCGGTCGACTTGG 60.886 66.667 16.46 6.48 44.06 3.61
359 460 2.511600 GATGGCGGTCGACTTGGG 60.512 66.667 16.46 3.92 0.00 4.12
360 461 4.778143 ATGGCGGTCGACTTGGGC 62.778 66.667 16.46 16.75 0.00 5.36
363 464 3.423154 GCGGTCGACTTGGGCAAG 61.423 66.667 16.46 0.00 43.79 4.01
373 474 1.238439 CTTGGGCAAGTTCGTCATGT 58.762 50.000 0.00 0.00 33.87 3.21
374 475 0.950836 TTGGGCAAGTTCGTCATGTG 59.049 50.000 0.00 0.00 0.00 3.21
375 476 0.107643 TGGGCAAGTTCGTCATGTGA 59.892 50.000 0.00 0.00 0.00 3.58
376 477 1.271325 TGGGCAAGTTCGTCATGTGAT 60.271 47.619 0.00 0.00 0.00 3.06
377 478 2.027653 TGGGCAAGTTCGTCATGTGATA 60.028 45.455 0.00 0.00 0.00 2.15
378 479 3.206150 GGGCAAGTTCGTCATGTGATAT 58.794 45.455 0.00 0.00 0.00 1.63
379 480 4.141824 TGGGCAAGTTCGTCATGTGATATA 60.142 41.667 0.00 0.00 0.00 0.86
380 481 4.211374 GGGCAAGTTCGTCATGTGATATAC 59.789 45.833 0.00 0.00 0.00 1.47
381 482 4.808895 GGCAAGTTCGTCATGTGATATACA 59.191 41.667 0.00 0.00 44.87 2.29
394 495 5.555552 TGTGATATACATTTTTCACGCACG 58.444 37.500 0.00 0.00 41.02 5.34
395 496 5.348997 TGTGATATACATTTTTCACGCACGA 59.651 36.000 0.00 0.00 41.02 4.35
396 497 6.036626 TGTGATATACATTTTTCACGCACGAT 59.963 34.615 0.00 0.00 41.02 3.73
397 498 6.354362 GTGATATACATTTTTCACGCACGATG 59.646 38.462 0.00 0.00 30.29 3.84
398 499 2.330231 ACATTTTTCACGCACGATGG 57.670 45.000 0.00 0.00 0.00 3.51
399 500 1.876799 ACATTTTTCACGCACGATGGA 59.123 42.857 0.00 0.00 0.00 3.41
400 501 2.241722 CATTTTTCACGCACGATGGAC 58.758 47.619 0.00 0.00 0.00 4.02
401 502 1.588674 TTTTTCACGCACGATGGACT 58.411 45.000 0.00 0.00 0.00 3.85
402 503 1.144969 TTTTCACGCACGATGGACTC 58.855 50.000 0.00 0.00 0.00 3.36
415 516 2.486042 GACTCGTCCAGCTCGACC 59.514 66.667 5.85 0.00 33.71 4.79
416 517 2.282251 ACTCGTCCAGCTCGACCA 60.282 61.111 5.85 0.00 33.71 4.02
417 518 1.658686 GACTCGTCCAGCTCGACCAT 61.659 60.000 5.85 0.00 33.71 3.55
418 519 1.064946 CTCGTCCAGCTCGACCATC 59.935 63.158 5.85 0.00 33.71 3.51
419 520 1.657751 CTCGTCCAGCTCGACCATCA 61.658 60.000 5.85 0.00 33.71 3.07
420 521 1.517257 CGTCCAGCTCGACCATCAC 60.517 63.158 5.85 0.00 0.00 3.06
421 522 1.153549 GTCCAGCTCGACCATCACC 60.154 63.158 0.00 0.00 0.00 4.02
422 523 2.202797 CCAGCTCGACCATCACCG 60.203 66.667 0.00 0.00 0.00 4.94
423 524 2.710902 CCAGCTCGACCATCACCGA 61.711 63.158 0.00 0.00 0.00 4.69
424 525 1.215382 CAGCTCGACCATCACCGAA 59.785 57.895 0.00 0.00 34.17 4.30
425 526 0.389817 CAGCTCGACCATCACCGAAA 60.390 55.000 0.00 0.00 34.17 3.46
426 527 0.108615 AGCTCGACCATCACCGAAAG 60.109 55.000 0.00 0.00 34.17 2.62
427 528 0.389948 GCTCGACCATCACCGAAAGT 60.390 55.000 0.00 0.00 34.17 2.66
428 529 1.630148 CTCGACCATCACCGAAAGTC 58.370 55.000 0.00 0.00 34.17 3.01
429 530 0.963225 TCGACCATCACCGAAAGTCA 59.037 50.000 0.00 0.00 0.00 3.41
430 531 1.341852 TCGACCATCACCGAAAGTCAA 59.658 47.619 0.00 0.00 0.00 3.18
431 532 2.139917 CGACCATCACCGAAAGTCAAA 58.860 47.619 0.00 0.00 0.00 2.69
432 533 2.546368 CGACCATCACCGAAAGTCAAAA 59.454 45.455 0.00 0.00 0.00 2.44
433 534 3.188460 CGACCATCACCGAAAGTCAAAAT 59.812 43.478 0.00 0.00 0.00 1.82
434 535 4.390603 CGACCATCACCGAAAGTCAAAATA 59.609 41.667 0.00 0.00 0.00 1.40
435 536 5.064707 CGACCATCACCGAAAGTCAAAATAT 59.935 40.000 0.00 0.00 0.00 1.28
436 537 6.436843 ACCATCACCGAAAGTCAAAATATC 57.563 37.500 0.00 0.00 0.00 1.63
437 538 5.357032 ACCATCACCGAAAGTCAAAATATCC 59.643 40.000 0.00 0.00 0.00 2.59
438 539 5.501715 CATCACCGAAAGTCAAAATATCCG 58.498 41.667 0.00 0.00 0.00 4.18
439 540 4.571919 TCACCGAAAGTCAAAATATCCGT 58.428 39.130 0.00 0.00 0.00 4.69
440 541 4.390603 TCACCGAAAGTCAAAATATCCGTG 59.609 41.667 0.00 0.00 0.00 4.94
441 542 4.390603 CACCGAAAGTCAAAATATCCGTGA 59.609 41.667 0.00 0.00 0.00 4.35
442 543 4.630069 ACCGAAAGTCAAAATATCCGTGAG 59.370 41.667 0.00 0.00 0.00 3.51
443 544 4.868171 CCGAAAGTCAAAATATCCGTGAGA 59.132 41.667 0.00 0.00 0.00 3.27
444 545 5.523916 CCGAAAGTCAAAATATCCGTGAGAT 59.476 40.000 0.00 0.00 39.15 2.75
445 546 6.700081 CCGAAAGTCAAAATATCCGTGAGATA 59.300 38.462 0.00 0.00 41.73 1.98
446 547 7.096023 CCGAAAGTCAAAATATCCGTGAGATAG 60.096 40.741 0.00 0.00 40.82 2.08
447 548 7.435488 CGAAAGTCAAAATATCCGTGAGATAGT 59.565 37.037 0.00 0.00 40.82 2.12
448 549 8.425577 AAAGTCAAAATATCCGTGAGATAGTG 57.574 34.615 0.00 0.00 40.82 2.74
449 550 7.113658 AGTCAAAATATCCGTGAGATAGTGT 57.886 36.000 0.00 0.00 40.82 3.55
450 551 7.203910 AGTCAAAATATCCGTGAGATAGTGTC 58.796 38.462 0.00 0.00 40.82 3.67
451 552 6.421202 GTCAAAATATCCGTGAGATAGTGTCC 59.579 42.308 0.00 0.00 40.82 4.02
452 553 6.097696 TCAAAATATCCGTGAGATAGTGTCCA 59.902 38.462 0.00 0.00 40.82 4.02
453 554 5.455056 AATATCCGTGAGATAGTGTCCAC 57.545 43.478 0.00 0.00 40.82 4.02
454 555 1.471119 TCCGTGAGATAGTGTCCACC 58.529 55.000 0.00 0.00 0.00 4.61
455 556 1.182667 CCGTGAGATAGTGTCCACCA 58.817 55.000 0.00 0.00 0.00 4.17
456 557 1.757118 CCGTGAGATAGTGTCCACCAT 59.243 52.381 0.00 0.00 0.00 3.55
457 558 2.956333 CCGTGAGATAGTGTCCACCATA 59.044 50.000 0.00 0.00 0.00 2.74
458 559 3.574396 CCGTGAGATAGTGTCCACCATAT 59.426 47.826 0.00 0.00 0.00 1.78
459 560 4.765339 CCGTGAGATAGTGTCCACCATATA 59.235 45.833 0.00 0.00 0.00 0.86
460 561 5.419155 CCGTGAGATAGTGTCCACCATATAT 59.581 44.000 0.00 0.00 0.00 0.86
461 562 6.602009 CCGTGAGATAGTGTCCACCATATATA 59.398 42.308 0.00 0.00 0.00 0.86
462 563 7.415318 CCGTGAGATAGTGTCCACCATATATAC 60.415 44.444 0.00 0.00 0.00 1.47
463 564 7.415318 CGTGAGATAGTGTCCACCATATATACC 60.415 44.444 0.00 0.00 0.00 2.73
464 565 7.396339 GTGAGATAGTGTCCACCATATATACCA 59.604 40.741 0.00 0.00 0.00 3.25
465 566 7.396339 TGAGATAGTGTCCACCATATATACCAC 59.604 40.741 0.00 0.00 0.00 4.16
466 567 6.668283 AGATAGTGTCCACCATATATACCACC 59.332 42.308 0.00 0.00 0.00 4.61
467 568 4.562767 AGTGTCCACCATATATACCACCA 58.437 43.478 0.00 0.00 0.00 4.17
468 569 4.972568 AGTGTCCACCATATATACCACCAA 59.027 41.667 0.00 0.00 0.00 3.67
469 570 5.061179 GTGTCCACCATATATACCACCAAC 58.939 45.833 0.00 0.00 0.00 3.77
470 571 4.722279 TGTCCACCATATATACCACCAACA 59.278 41.667 0.00 0.00 0.00 3.33
471 572 5.163248 TGTCCACCATATATACCACCAACAG 60.163 44.000 0.00 0.00 0.00 3.16
472 573 4.972568 TCCACCATATATACCACCAACAGT 59.027 41.667 0.00 0.00 0.00 3.55
473 574 5.063204 CCACCATATATACCACCAACAGTG 58.937 45.833 0.00 0.00 46.83 3.66
484 585 3.409026 ACCAACAGTGAGAGTTCCATC 57.591 47.619 0.00 0.00 0.00 3.51
485 586 2.705658 ACCAACAGTGAGAGTTCCATCA 59.294 45.455 0.00 0.00 0.00 3.07
486 587 3.328931 ACCAACAGTGAGAGTTCCATCAT 59.671 43.478 0.00 0.00 0.00 2.45
487 588 4.532126 ACCAACAGTGAGAGTTCCATCATA 59.468 41.667 0.00 0.00 0.00 2.15
488 589 5.190528 ACCAACAGTGAGAGTTCCATCATAT 59.809 40.000 0.00 0.00 0.00 1.78
489 590 6.384015 ACCAACAGTGAGAGTTCCATCATATA 59.616 38.462 0.00 0.00 0.00 0.86
490 591 7.071698 ACCAACAGTGAGAGTTCCATCATATAT 59.928 37.037 0.00 0.00 0.00 0.86
491 592 8.588472 CCAACAGTGAGAGTTCCATCATATATA 58.412 37.037 0.00 0.00 0.00 0.86
494 595 9.319060 ACAGTGAGAGTTCCATCATATATATGT 57.681 33.333 19.78 7.17 35.26 2.29
495 596 9.583765 CAGTGAGAGTTCCATCATATATATGTG 57.416 37.037 19.78 16.39 35.26 3.21
496 597 9.539194 AGTGAGAGTTCCATCATATATATGTGA 57.461 33.333 19.78 13.77 35.26 3.58
497 598 9.800433 GTGAGAGTTCCATCATATATATGTGAG 57.200 37.037 19.78 11.83 35.26 3.51
498 599 9.759473 TGAGAGTTCCATCATATATATGTGAGA 57.241 33.333 19.78 12.73 35.26 3.27
500 601 9.766754 AGAGTTCCATCATATATATGTGAGAGT 57.233 33.333 19.78 12.10 35.26 3.24
501 602 9.800433 GAGTTCCATCATATATATGTGAGAGTG 57.200 37.037 19.78 10.30 35.26 3.51
502 603 9.539194 AGTTCCATCATATATATGTGAGAGTGA 57.461 33.333 19.78 8.07 35.26 3.41
505 606 9.705103 TCCATCATATATATGTGAGAGTGATGA 57.295 33.333 19.78 5.21 42.46 2.92
506 607 9.968870 CCATCATATATATGTGAGAGTGATGAG 57.031 37.037 19.78 7.36 42.46 2.90
509 610 9.972106 TCATATATATGTGAGAGTGATGAGAGT 57.028 33.333 19.78 0.00 35.26 3.24
512 613 6.788598 ATATGTGAGAGTGATGAGAGTTGT 57.211 37.500 0.00 0.00 0.00 3.32
513 614 4.944619 TGTGAGAGTGATGAGAGTTGTT 57.055 40.909 0.00 0.00 0.00 2.83
514 615 6.596309 ATGTGAGAGTGATGAGAGTTGTTA 57.404 37.500 0.00 0.00 0.00 2.41
515 616 6.596309 TGTGAGAGTGATGAGAGTTGTTAT 57.404 37.500 0.00 0.00 0.00 1.89
516 617 6.997655 TGTGAGAGTGATGAGAGTTGTTATT 58.002 36.000 0.00 0.00 0.00 1.40
517 618 6.870439 TGTGAGAGTGATGAGAGTTGTTATTG 59.130 38.462 0.00 0.00 0.00 1.90
518 619 6.312426 GTGAGAGTGATGAGAGTTGTTATTGG 59.688 42.308 0.00 0.00 0.00 3.16
519 620 6.211384 TGAGAGTGATGAGAGTTGTTATTGGA 59.789 38.462 0.00 0.00 0.00 3.53
520 621 6.638610 AGAGTGATGAGAGTTGTTATTGGAG 58.361 40.000 0.00 0.00 0.00 3.86
521 622 5.738909 AGTGATGAGAGTTGTTATTGGAGG 58.261 41.667 0.00 0.00 0.00 4.30
522 623 5.485353 AGTGATGAGAGTTGTTATTGGAGGA 59.515 40.000 0.00 0.00 0.00 3.71
523 624 6.013379 AGTGATGAGAGTTGTTATTGGAGGAA 60.013 38.462 0.00 0.00 0.00 3.36
524 625 6.314896 GTGATGAGAGTTGTTATTGGAGGAAG 59.685 42.308 0.00 0.00 0.00 3.46
525 626 6.213397 TGATGAGAGTTGTTATTGGAGGAAGA 59.787 38.462 0.00 0.00 0.00 2.87
526 627 6.433847 TGAGAGTTGTTATTGGAGGAAGAA 57.566 37.500 0.00 0.00 0.00 2.52
527 628 6.837312 TGAGAGTTGTTATTGGAGGAAGAAA 58.163 36.000 0.00 0.00 0.00 2.52
528 629 7.287061 TGAGAGTTGTTATTGGAGGAAGAAAA 58.713 34.615 0.00 0.00 0.00 2.29
529 630 7.944554 TGAGAGTTGTTATTGGAGGAAGAAAAT 59.055 33.333 0.00 0.00 0.00 1.82
530 631 8.341892 AGAGTTGTTATTGGAGGAAGAAAATC 57.658 34.615 0.00 0.00 0.00 2.17
531 632 7.119846 AGAGTTGTTATTGGAGGAAGAAAATCG 59.880 37.037 0.00 0.00 0.00 3.34
532 633 6.715264 AGTTGTTATTGGAGGAAGAAAATCGT 59.285 34.615 0.00 0.00 0.00 3.73
533 634 6.737254 TGTTATTGGAGGAAGAAAATCGTC 57.263 37.500 0.00 0.00 34.33 4.20
534 635 6.472887 TGTTATTGGAGGAAGAAAATCGTCT 58.527 36.000 0.00 0.00 35.20 4.18
535 636 6.940298 TGTTATTGGAGGAAGAAAATCGTCTT 59.060 34.615 0.00 0.00 40.62 3.01
536 637 7.447238 TGTTATTGGAGGAAGAAAATCGTCTTT 59.553 33.333 0.00 0.00 37.98 2.52
537 638 6.901081 ATTGGAGGAAGAAAATCGTCTTTT 57.099 33.333 0.00 0.00 37.98 2.27
538 639 5.689383 TGGAGGAAGAAAATCGTCTTTTG 57.311 39.130 3.75 0.00 37.98 2.44
539 640 5.130350 TGGAGGAAGAAAATCGTCTTTTGT 58.870 37.500 3.75 0.00 37.98 2.83
540 641 5.238650 TGGAGGAAGAAAATCGTCTTTTGTC 59.761 40.000 3.75 2.29 37.98 3.18
541 642 5.344207 AGGAAGAAAATCGTCTTTTGTCG 57.656 39.130 3.75 0.00 37.98 4.35
542 643 5.054477 AGGAAGAAAATCGTCTTTTGTCGA 58.946 37.500 3.75 0.00 43.20 4.20
544 645 5.790495 GGAAGAAAATCGTCTTTTGTCGATG 59.210 40.000 0.00 0.00 46.50 3.84
545 646 5.283060 AGAAAATCGTCTTTTGTCGATGG 57.717 39.130 0.00 0.00 46.50 3.51
546 647 3.471495 AAATCGTCTTTTGTCGATGGC 57.529 42.857 0.00 0.00 46.50 4.40
547 648 0.999406 ATCGTCTTTTGTCGATGGCG 59.001 50.000 0.00 0.00 45.75 5.69
548 649 1.011968 TCGTCTTTTGTCGATGGCGG 61.012 55.000 0.00 0.00 35.31 6.13
549 650 1.289109 CGTCTTTTGTCGATGGCGGT 61.289 55.000 0.00 0.00 38.28 5.68
550 651 0.442699 GTCTTTTGTCGATGGCGGTC 59.557 55.000 0.00 0.00 38.28 4.79
551 652 1.011968 TCTTTTGTCGATGGCGGTCG 61.012 55.000 5.84 5.84 42.74 4.79
556 657 3.822192 TCGATGGCGGTCGACCTG 61.822 66.667 30.92 23.99 44.87 4.00
557 658 3.822192 CGATGGCGGTCGACCTGA 61.822 66.667 30.92 15.45 44.06 3.86
558 659 2.105128 GATGGCGGTCGACCTGAG 59.895 66.667 30.92 17.48 0.00 3.35
559 660 4.148825 ATGGCGGTCGACCTGAGC 62.149 66.667 30.92 25.50 41.76 4.26
564 665 2.963371 GGTCGACCTGAGCGAGTT 59.037 61.111 27.64 0.00 38.59 3.01
565 666 1.153997 GGTCGACCTGAGCGAGTTC 60.154 63.158 27.64 0.00 38.59 3.01
566 667 1.512310 GTCGACCTGAGCGAGTTCG 60.512 63.158 3.51 0.00 38.59 3.95
567 668 1.964891 TCGACCTGAGCGAGTTCGT 60.965 57.895 3.27 0.00 42.22 3.85
568 669 1.512310 CGACCTGAGCGAGTTCGTC 60.512 63.158 3.27 1.13 42.22 4.20
569 670 1.877367 GACCTGAGCGAGTTCGTCT 59.123 57.895 3.27 1.21 42.22 4.18
570 671 0.241481 GACCTGAGCGAGTTCGTCTT 59.759 55.000 3.27 0.00 42.22 3.01
571 672 1.467734 GACCTGAGCGAGTTCGTCTTA 59.532 52.381 3.27 0.00 42.22 2.10
572 673 2.093106 ACCTGAGCGAGTTCGTCTTAT 58.907 47.619 3.27 0.00 42.22 1.73
573 674 2.159366 ACCTGAGCGAGTTCGTCTTATG 60.159 50.000 3.27 0.00 42.22 1.90
574 675 2.097629 CCTGAGCGAGTTCGTCTTATGA 59.902 50.000 3.27 0.00 42.22 2.15
575 676 3.243234 CCTGAGCGAGTTCGTCTTATGAT 60.243 47.826 3.27 0.00 42.22 2.45
576 677 4.023963 CCTGAGCGAGTTCGTCTTATGATA 60.024 45.833 3.27 0.00 42.22 2.15
577 678 5.335269 CCTGAGCGAGTTCGTCTTATGATAT 60.335 44.000 3.27 0.00 42.22 1.63
578 679 6.128254 CCTGAGCGAGTTCGTCTTATGATATA 60.128 42.308 3.27 0.00 42.22 0.86
579 680 6.600350 TGAGCGAGTTCGTCTTATGATATAC 58.400 40.000 3.27 0.00 42.22 1.47
580 681 5.619513 AGCGAGTTCGTCTTATGATATACG 58.380 41.667 3.27 2.54 42.22 3.06
581 682 5.178996 AGCGAGTTCGTCTTATGATATACGT 59.821 40.000 3.27 0.00 42.22 3.57
582 683 5.850128 GCGAGTTCGTCTTATGATATACGTT 59.150 40.000 0.00 0.00 42.22 3.99
583 684 6.359087 GCGAGTTCGTCTTATGATATACGTTT 59.641 38.462 0.00 0.00 42.22 3.60
584 685 7.096722 GCGAGTTCGTCTTATGATATACGTTTT 60.097 37.037 0.00 0.00 42.22 2.43
585 686 8.740369 CGAGTTCGTCTTATGATATACGTTTTT 58.260 33.333 0.00 0.00 36.73 1.94
587 688 9.577110 AGTTCGTCTTATGATATACGTTTTTCA 57.423 29.630 0.00 0.00 36.73 2.69
588 689 9.615779 GTTCGTCTTATGATATACGTTTTTCAC 57.384 33.333 0.00 0.00 36.73 3.18
596 697 4.674496 CGTTTTTCACGCACGGTT 57.326 50.000 0.00 0.00 43.37 4.44
597 698 2.191219 CGTTTTTCACGCACGGTTG 58.809 52.632 0.00 0.00 43.37 3.77
598 699 0.247735 CGTTTTTCACGCACGGTTGA 60.248 50.000 0.00 0.00 43.37 3.18
599 700 1.185189 GTTTTTCACGCACGGTTGAC 58.815 50.000 0.00 0.00 0.00 3.18
600 701 1.088306 TTTTTCACGCACGGTTGACT 58.912 45.000 0.00 0.00 0.00 3.41
601 702 0.653636 TTTTCACGCACGGTTGACTC 59.346 50.000 0.00 0.00 0.00 3.36
602 703 1.484227 TTTCACGCACGGTTGACTCG 61.484 55.000 0.00 0.00 0.00 4.18
603 704 4.059459 CACGCACGGTTGACTCGC 62.059 66.667 0.00 0.00 0.00 5.03
606 707 4.980805 GCACGGTTGACTCGCCCA 62.981 66.667 0.00 0.00 0.00 5.36
607 708 2.738521 CACGGTTGACTCGCCCAG 60.739 66.667 0.00 0.00 0.00 4.45
608 709 4.681978 ACGGTTGACTCGCCCAGC 62.682 66.667 0.00 0.00 0.00 4.85
609 710 4.379243 CGGTTGACTCGCCCAGCT 62.379 66.667 0.00 0.00 0.00 4.24
610 711 2.435059 GGTTGACTCGCCCAGCTC 60.435 66.667 0.00 0.00 0.00 4.09
611 712 2.811317 GTTGACTCGCCCAGCTCG 60.811 66.667 0.00 0.00 0.00 5.03
612 713 2.989253 TTGACTCGCCCAGCTCGA 60.989 61.111 0.00 0.00 34.52 4.04
613 714 3.282745 TTGACTCGCCCAGCTCGAC 62.283 63.158 0.00 0.00 32.08 4.20
614 715 4.500116 GACTCGCCCAGCTCGACC 62.500 72.222 0.00 0.00 32.08 4.79
616 717 3.842923 CTCGCCCAGCTCGACCAT 61.843 66.667 0.00 0.00 32.08 3.55
617 718 3.781770 CTCGCCCAGCTCGACCATC 62.782 68.421 0.00 0.00 32.08 3.51
618 719 4.147449 CGCCCAGCTCGACCATCA 62.147 66.667 0.00 0.00 0.00 3.07
619 720 2.202987 GCCCAGCTCGACCATCAG 60.203 66.667 0.00 0.00 0.00 2.90
620 721 2.202987 CCCAGCTCGACCATCAGC 60.203 66.667 0.00 0.00 35.73 4.26
621 722 2.584418 CCAGCTCGACCATCAGCG 60.584 66.667 0.00 0.00 40.84 5.18
622 723 2.491621 CAGCTCGACCATCAGCGA 59.508 61.111 0.00 0.00 40.84 4.93
623 724 1.153765 CAGCTCGACCATCAGCGAA 60.154 57.895 0.00 0.00 40.84 4.70
624 725 0.737367 CAGCTCGACCATCAGCGAAA 60.737 55.000 0.00 0.00 40.84 3.46
625 726 0.459237 AGCTCGACCATCAGCGAAAG 60.459 55.000 0.00 0.00 40.84 2.62
626 727 0.737715 GCTCGACCATCAGCGAAAGT 60.738 55.000 0.00 0.00 35.95 2.66
627 728 1.272781 CTCGACCATCAGCGAAAGTC 58.727 55.000 0.00 0.00 35.95 3.01
628 729 1.991430 CGACCATCAGCGAAAGTCG 59.009 57.895 14.24 14.24 43.52 4.18
629 730 3.418675 GACCATCAGCGAAAGTCGA 57.581 52.632 1.05 0.00 43.74 4.20
630 731 1.710013 GACCATCAGCGAAAGTCGAA 58.290 50.000 1.05 0.00 43.74 3.71
631 732 2.066262 GACCATCAGCGAAAGTCGAAA 58.934 47.619 1.05 0.00 43.74 3.46
632 733 2.673368 GACCATCAGCGAAAGTCGAAAT 59.327 45.455 1.05 0.00 43.74 2.17
633 734 3.857052 ACCATCAGCGAAAGTCGAAATA 58.143 40.909 1.05 0.00 43.74 1.40
634 735 4.442706 ACCATCAGCGAAAGTCGAAATAT 58.557 39.130 1.05 0.00 43.74 1.28
635 736 4.508124 ACCATCAGCGAAAGTCGAAATATC 59.492 41.667 1.05 0.00 43.74 1.63
636 737 4.084328 CCATCAGCGAAAGTCGAAATATCC 60.084 45.833 1.05 0.00 43.74 2.59
637 738 3.113322 TCAGCGAAAGTCGAAATATCCG 58.887 45.455 1.05 0.00 43.74 4.18
638 739 2.858344 CAGCGAAAGTCGAAATATCCGT 59.142 45.455 1.05 0.00 43.74 4.69
639 740 2.858344 AGCGAAAGTCGAAATATCCGTG 59.142 45.455 1.05 0.00 43.74 4.94
640 741 2.855963 GCGAAAGTCGAAATATCCGTGA 59.144 45.455 1.05 0.00 43.74 4.35
641 742 3.061139 GCGAAAGTCGAAATATCCGTGAG 60.061 47.826 1.05 0.00 43.74 3.51
642 743 4.348656 CGAAAGTCGAAATATCCGTGAGA 58.651 43.478 0.00 0.00 43.74 3.27
643 744 4.976731 CGAAAGTCGAAATATCCGTGAGAT 59.023 41.667 0.00 0.00 43.74 2.75
644 745 6.140786 CGAAAGTCGAAATATCCGTGAGATA 58.859 40.000 0.00 0.00 43.74 1.98
645 746 6.303496 CGAAAGTCGAAATATCCGTGAGATAG 59.697 42.308 0.00 0.00 43.74 2.08
646 747 6.636562 AAGTCGAAATATCCGTGAGATAGT 57.363 37.500 0.00 0.00 40.82 2.12
647 748 6.003234 AGTCGAAATATCCGTGAGATAGTG 57.997 41.667 0.00 0.00 40.82 2.74
648 749 5.531659 AGTCGAAATATCCGTGAGATAGTGT 59.468 40.000 0.00 0.00 40.82 3.55
649 750 5.852229 GTCGAAATATCCGTGAGATAGTGTC 59.148 44.000 0.00 0.00 40.82 3.67
650 751 5.048921 TCGAAATATCCGTGAGATAGTGTCC 60.049 44.000 0.00 0.00 40.82 4.02
651 752 5.278315 CGAAATATCCGTGAGATAGTGTCCA 60.278 44.000 0.00 0.00 40.82 4.02
652 753 6.570571 CGAAATATCCGTGAGATAGTGTCCAT 60.571 42.308 0.00 0.00 40.82 3.41
653 754 7.361799 CGAAATATCCGTGAGATAGTGTCCATA 60.362 40.741 0.00 0.00 40.82 2.74
654 755 6.761099 ATATCCGTGAGATAGTGTCCATAC 57.239 41.667 0.00 0.00 40.82 2.39
655 756 3.893521 TCCGTGAGATAGTGTCCATACA 58.106 45.455 0.00 0.00 0.00 2.29
656 757 4.274978 TCCGTGAGATAGTGTCCATACAA 58.725 43.478 0.00 0.00 37.36 2.41
657 758 4.338400 TCCGTGAGATAGTGTCCATACAAG 59.662 45.833 0.00 0.00 37.36 3.16
658 759 4.338400 CCGTGAGATAGTGTCCATACAAGA 59.662 45.833 0.00 0.00 37.36 3.02
659 760 5.163550 CCGTGAGATAGTGTCCATACAAGAA 60.164 44.000 0.00 0.00 37.36 2.52
660 761 5.744345 CGTGAGATAGTGTCCATACAAGAAC 59.256 44.000 0.00 0.00 37.36 3.01
661 762 6.404844 CGTGAGATAGTGTCCATACAAGAACT 60.405 42.308 0.00 0.00 37.36 3.01
662 763 6.754209 GTGAGATAGTGTCCATACAAGAACTG 59.246 42.308 0.00 0.00 37.36 3.16
663 764 6.437477 TGAGATAGTGTCCATACAAGAACTGT 59.563 38.462 0.00 0.00 42.47 3.55
664 765 6.634805 AGATAGTGTCCATACAAGAACTGTG 58.365 40.000 0.00 0.00 39.20 3.66
665 766 3.403038 AGTGTCCATACAAGAACTGTGC 58.597 45.455 0.00 0.00 39.20 4.57
666 767 2.484264 GTGTCCATACAAGAACTGTGCC 59.516 50.000 0.00 0.00 39.20 5.01
667 768 2.105649 TGTCCATACAAGAACTGTGCCA 59.894 45.455 0.00 0.00 39.20 4.92
668 769 3.244875 TGTCCATACAAGAACTGTGCCAT 60.245 43.478 0.00 0.00 39.20 4.40
669 770 3.127548 GTCCATACAAGAACTGTGCCATG 59.872 47.826 0.00 0.00 39.20 3.66
670 771 3.008923 TCCATACAAGAACTGTGCCATGA 59.991 43.478 0.00 0.00 39.20 3.07
671 772 3.127548 CCATACAAGAACTGTGCCATGAC 59.872 47.826 0.00 0.00 39.20 3.06
672 773 2.346766 ACAAGAACTGTGCCATGACA 57.653 45.000 0.00 0.00 36.69 3.58
678 779 2.168947 CTGTGCCATGACAGTGAGC 58.831 57.895 0.00 0.00 38.88 4.26
679 780 0.321387 CTGTGCCATGACAGTGAGCT 60.321 55.000 0.00 0.00 38.88 4.09
680 781 0.321034 TGTGCCATGACAGTGAGCTC 60.321 55.000 6.82 6.82 0.00 4.09
681 782 0.321034 GTGCCATGACAGTGAGCTCA 60.321 55.000 13.74 13.74 0.00 4.26
682 783 0.036671 TGCCATGACAGTGAGCTCAG 60.037 55.000 18.89 9.24 0.00 3.35
683 784 0.248565 GCCATGACAGTGAGCTCAGA 59.751 55.000 18.89 0.00 0.00 3.27
684 785 1.134461 GCCATGACAGTGAGCTCAGAT 60.134 52.381 18.89 6.04 0.00 2.90
685 786 2.823984 CCATGACAGTGAGCTCAGATC 58.176 52.381 18.89 15.07 0.00 2.75
686 787 2.461903 CATGACAGTGAGCTCAGATCG 58.538 52.381 18.89 8.33 0.00 3.69
687 788 0.813821 TGACAGTGAGCTCAGATCGG 59.186 55.000 18.89 9.05 0.00 4.18
688 789 1.098869 GACAGTGAGCTCAGATCGGA 58.901 55.000 18.89 0.00 0.00 4.55
689 790 0.814457 ACAGTGAGCTCAGATCGGAC 59.186 55.000 18.89 3.06 0.00 4.79
690 791 0.248417 CAGTGAGCTCAGATCGGACG 60.248 60.000 18.89 0.00 0.00 4.79
691 792 0.393132 AGTGAGCTCAGATCGGACGA 60.393 55.000 18.89 0.00 0.00 4.20
692 793 0.665835 GTGAGCTCAGATCGGACGAT 59.334 55.000 18.89 6.95 37.59 3.73
699 800 2.354773 GATCGGACGATCGGTGGC 60.355 66.667 20.98 5.56 41.09 5.01
700 801 4.266070 ATCGGACGATCGGTGGCG 62.266 66.667 20.98 0.00 0.00 5.69
857 4104 2.028130 ACTACTCTATCAGCTGCGCTT 58.972 47.619 9.47 0.00 36.40 4.68
921 4696 2.356125 CCAGAAATCCATTGACTCCGGT 60.356 50.000 0.00 0.00 0.00 5.28
927 4702 2.047274 ATTGACTCCGGTGGCGTG 60.047 61.111 8.63 0.00 0.00 5.34
928 4703 3.605749 ATTGACTCCGGTGGCGTGG 62.606 63.158 8.63 0.00 0.00 4.94
954 4729 2.000447 GGTGCGTACCAGAGAATCAAC 59.000 52.381 18.66 0.00 46.71 3.18
989 4775 0.810031 CGCTACCCTGTTTGGATCGG 60.810 60.000 0.00 0.00 38.35 4.18
1060 4863 1.810532 GTTGGTTTGTCGTGGGCAA 59.189 52.632 0.00 0.00 0.00 4.52
1084 4887 1.004560 TGGAGCCTCTTGTCGCAAG 60.005 57.895 11.78 11.78 0.00 4.01
2165 6002 2.294512 GGAAGAAAAGTTCAGCCACCTG 59.705 50.000 0.00 0.00 40.54 4.00
2189 6026 2.159128 AGACCGATTGCATGAGAGAGTG 60.159 50.000 0.00 0.00 0.00 3.51
3053 7256 2.104111 TGGACGTCATTTGGTCAGAGTT 59.896 45.455 18.91 0.00 34.87 3.01
3285 7495 0.249447 CGTCTTCATAGATGCCGCCA 60.249 55.000 0.00 0.00 31.03 5.69
3447 7674 5.775686 AGCACTTGTTGTTCGTACTGTATA 58.224 37.500 0.00 0.00 0.00 1.47
3448 7675 6.218019 AGCACTTGTTGTTCGTACTGTATAA 58.782 36.000 0.00 0.00 0.00 0.98
3449 7676 6.365247 AGCACTTGTTGTTCGTACTGTATAAG 59.635 38.462 0.00 0.00 0.00 1.73
3450 7677 6.145048 GCACTTGTTGTTCGTACTGTATAAGT 59.855 38.462 0.00 0.00 43.40 2.24
3664 7915 2.911509 ACCACGCATGCAGGCAAA 60.912 55.556 24.53 0.00 0.00 3.68
3680 7931 4.758674 CAGGCAAATATCCGATGATTCAGT 59.241 41.667 0.00 0.00 32.18 3.41
3733 7984 0.178301 TGTGCCGTGTAAAGTGGTCA 59.822 50.000 0.00 0.00 0.00 4.02
3762 8013 3.000041 TCTGCACGCCATTGTAAAGTAG 59.000 45.455 0.00 0.00 0.00 2.57
3763 8014 1.466950 TGCACGCCATTGTAAAGTAGC 59.533 47.619 0.00 0.00 0.00 3.58
4166 8678 7.176865 TCTGTAGTGTAAATGTTCAGAGTAGCT 59.823 37.037 0.00 0.00 0.00 3.32
4253 8766 2.029020 TGTAGAGATGCAGCGTTTCTGT 60.029 45.455 16.32 6.36 44.66 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.088589 ACAACAAGAACTATTACATGCATCC 57.911 36.000 0.00 0.00 0.00 3.51
117 216 5.470098 TCAAAAGTCGATTTTCTTCCTCCAG 59.530 40.000 6.35 0.00 39.11 3.86
147 246 1.827399 AACTCGCCCAGATTGACCGT 61.827 55.000 0.00 0.00 0.00 4.83
168 267 6.799441 TGCGTGACAAATGTATATCACAAAAC 59.201 34.615 4.31 0.00 41.55 2.43
170 269 6.310960 GTGCGTGACAAATGTATATCACAAA 58.689 36.000 4.31 0.00 41.55 2.83
199 298 2.743928 GGTCAAGCTGGGCGAGTG 60.744 66.667 0.00 0.00 0.00 3.51
243 344 7.629157 TGGTGGTATATATGGTGGACATTATG 58.371 38.462 0.00 0.00 41.03 1.90
247 348 4.019321 GCTGGTGGTATATATGGTGGACAT 60.019 45.833 0.00 0.00 43.68 3.06
354 455 1.069022 CACATGACGAACTTGCCCAAG 60.069 52.381 0.00 6.48 43.79 3.61
355 456 0.950836 CACATGACGAACTTGCCCAA 59.049 50.000 0.00 0.00 0.00 4.12
356 457 0.107643 TCACATGACGAACTTGCCCA 59.892 50.000 0.00 0.00 0.00 5.36
357 458 1.453155 ATCACATGACGAACTTGCCC 58.547 50.000 0.00 0.00 0.00 5.36
358 459 4.808895 TGTATATCACATGACGAACTTGCC 59.191 41.667 0.00 0.00 30.04 4.52
359 460 5.966636 TGTATATCACATGACGAACTTGC 57.033 39.130 0.00 0.00 30.04 4.01
371 472 5.348997 TCGTGCGTGAAAAATGTATATCACA 59.651 36.000 5.71 0.00 41.69 3.58
372 473 5.791589 TCGTGCGTGAAAAATGTATATCAC 58.208 37.500 0.00 0.00 38.98 3.06
373 474 6.418141 CATCGTGCGTGAAAAATGTATATCA 58.582 36.000 0.00 0.00 0.00 2.15
374 475 5.845953 CCATCGTGCGTGAAAAATGTATATC 59.154 40.000 0.00 0.00 0.00 1.63
375 476 5.525745 TCCATCGTGCGTGAAAAATGTATAT 59.474 36.000 0.00 0.00 0.00 0.86
376 477 4.870991 TCCATCGTGCGTGAAAAATGTATA 59.129 37.500 0.00 0.00 0.00 1.47
377 478 3.687212 TCCATCGTGCGTGAAAAATGTAT 59.313 39.130 0.00 0.00 0.00 2.29
378 479 3.067833 TCCATCGTGCGTGAAAAATGTA 58.932 40.909 0.00 0.00 0.00 2.29
379 480 1.876799 TCCATCGTGCGTGAAAAATGT 59.123 42.857 0.00 0.00 0.00 2.71
380 481 2.095768 AGTCCATCGTGCGTGAAAAATG 60.096 45.455 0.00 0.00 0.00 2.32
381 482 2.151202 AGTCCATCGTGCGTGAAAAAT 58.849 42.857 0.00 0.00 0.00 1.82
382 483 1.529438 GAGTCCATCGTGCGTGAAAAA 59.471 47.619 0.00 0.00 0.00 1.94
383 484 1.144969 GAGTCCATCGTGCGTGAAAA 58.855 50.000 0.00 0.00 0.00 2.29
384 485 1.006825 CGAGTCCATCGTGCGTGAAA 61.007 55.000 0.00 0.00 46.62 2.69
385 486 1.443702 CGAGTCCATCGTGCGTGAA 60.444 57.895 0.00 0.00 46.62 3.18
386 487 2.178273 CGAGTCCATCGTGCGTGA 59.822 61.111 0.00 0.00 46.62 4.35
398 499 1.658686 ATGGTCGAGCTGGACGAGTC 61.659 60.000 20.78 8.97 40.37 3.36
399 500 1.658686 GATGGTCGAGCTGGACGAGT 61.659 60.000 20.78 10.26 40.37 4.18
400 501 1.064946 GATGGTCGAGCTGGACGAG 59.935 63.158 20.78 0.00 40.37 4.18
401 502 1.677633 TGATGGTCGAGCTGGACGA 60.678 57.895 20.78 18.18 37.82 4.20
402 503 1.517257 GTGATGGTCGAGCTGGACG 60.517 63.158 20.78 4.85 37.82 4.79
403 504 1.153549 GGTGATGGTCGAGCTGGAC 60.154 63.158 19.63 19.63 36.18 4.02
404 505 2.710902 CGGTGATGGTCGAGCTGGA 61.711 63.158 16.64 0.00 0.00 3.86
405 506 2.202797 CGGTGATGGTCGAGCTGG 60.203 66.667 16.64 0.00 0.00 4.85
406 507 0.389817 TTTCGGTGATGGTCGAGCTG 60.390 55.000 16.64 0.00 36.72 4.24
407 508 0.108615 CTTTCGGTGATGGTCGAGCT 60.109 55.000 16.64 0.97 36.72 4.09
408 509 0.389948 ACTTTCGGTGATGGTCGAGC 60.390 55.000 7.89 7.89 36.72 5.03
409 510 1.067846 TGACTTTCGGTGATGGTCGAG 60.068 52.381 0.00 0.00 36.72 4.04
410 511 0.963225 TGACTTTCGGTGATGGTCGA 59.037 50.000 0.00 0.00 0.00 4.20
411 512 1.790755 TTGACTTTCGGTGATGGTCG 58.209 50.000 0.00 0.00 0.00 4.79
412 513 4.766404 ATTTTGACTTTCGGTGATGGTC 57.234 40.909 0.00 0.00 0.00 4.02
413 514 5.357032 GGATATTTTGACTTTCGGTGATGGT 59.643 40.000 0.00 0.00 0.00 3.55
414 515 5.504010 CGGATATTTTGACTTTCGGTGATGG 60.504 44.000 0.00 0.00 0.00 3.51
415 516 5.064707 ACGGATATTTTGACTTTCGGTGATG 59.935 40.000 0.00 0.00 0.00 3.07
416 517 5.064707 CACGGATATTTTGACTTTCGGTGAT 59.935 40.000 0.00 0.00 38.92 3.06
417 518 4.390603 CACGGATATTTTGACTTTCGGTGA 59.609 41.667 0.00 0.00 38.92 4.02
418 519 4.390603 TCACGGATATTTTGACTTTCGGTG 59.609 41.667 0.00 0.00 38.34 4.94
419 520 4.571919 TCACGGATATTTTGACTTTCGGT 58.428 39.130 0.00 0.00 0.00 4.69
420 521 4.868171 TCTCACGGATATTTTGACTTTCGG 59.132 41.667 0.00 0.00 0.00 4.30
421 522 6.589830 ATCTCACGGATATTTTGACTTTCG 57.410 37.500 0.00 0.00 32.04 3.46
422 523 8.543774 CACTATCTCACGGATATTTTGACTTTC 58.456 37.037 0.00 0.00 36.45 2.62
423 524 8.041323 ACACTATCTCACGGATATTTTGACTTT 58.959 33.333 0.00 0.00 36.45 2.66
424 525 7.556844 ACACTATCTCACGGATATTTTGACTT 58.443 34.615 0.00 0.00 36.45 3.01
425 526 7.113658 ACACTATCTCACGGATATTTTGACT 57.886 36.000 0.00 0.00 36.45 3.41
426 527 6.421202 GGACACTATCTCACGGATATTTTGAC 59.579 42.308 0.00 0.00 36.45 3.18
427 528 6.097696 TGGACACTATCTCACGGATATTTTGA 59.902 38.462 0.00 0.00 36.45 2.69
428 529 6.201044 GTGGACACTATCTCACGGATATTTTG 59.799 42.308 0.00 0.00 36.45 2.44
429 530 6.281405 GTGGACACTATCTCACGGATATTTT 58.719 40.000 0.00 0.00 36.45 1.82
430 531 5.221461 GGTGGACACTATCTCACGGATATTT 60.221 44.000 2.13 0.00 36.45 1.40
431 532 4.281182 GGTGGACACTATCTCACGGATATT 59.719 45.833 2.13 0.00 36.45 1.28
432 533 3.827302 GGTGGACACTATCTCACGGATAT 59.173 47.826 2.13 0.00 36.45 1.63
433 534 3.220110 GGTGGACACTATCTCACGGATA 58.780 50.000 2.13 0.00 35.98 2.59
434 535 2.032620 GGTGGACACTATCTCACGGAT 58.967 52.381 2.13 0.00 38.38 4.18
435 536 1.272258 TGGTGGACACTATCTCACGGA 60.272 52.381 2.13 0.00 32.31 4.69
436 537 1.182667 TGGTGGACACTATCTCACGG 58.817 55.000 2.13 0.00 32.31 4.94
437 538 4.855715 ATATGGTGGACACTATCTCACG 57.144 45.455 4.51 0.00 34.29 4.35
438 539 7.396339 TGGTATATATGGTGGACACTATCTCAC 59.604 40.741 4.51 0.80 34.29 3.51
439 540 7.396339 GTGGTATATATGGTGGACACTATCTCA 59.604 40.741 4.51 0.00 34.29 3.27
440 541 7.147880 GGTGGTATATATGGTGGACACTATCTC 60.148 44.444 4.51 0.00 34.29 2.75
441 542 6.668283 GGTGGTATATATGGTGGACACTATCT 59.332 42.308 4.51 0.00 34.29 1.98
442 543 6.439375 TGGTGGTATATATGGTGGACACTATC 59.561 42.308 4.51 0.00 34.29 2.08
443 544 6.327781 TGGTGGTATATATGGTGGACACTAT 58.672 40.000 6.55 6.55 36.46 2.12
444 545 5.718039 TGGTGGTATATATGGTGGACACTA 58.282 41.667 2.13 0.00 0.00 2.74
445 546 4.562767 TGGTGGTATATATGGTGGACACT 58.437 43.478 2.13 0.00 0.00 3.55
446 547 4.967084 TGGTGGTATATATGGTGGACAC 57.033 45.455 0.00 0.00 0.00 3.67
447 548 4.722279 TGTTGGTGGTATATATGGTGGACA 59.278 41.667 0.00 0.00 0.00 4.02
448 549 5.163237 ACTGTTGGTGGTATATATGGTGGAC 60.163 44.000 0.00 0.00 0.00 4.02
449 550 4.972568 ACTGTTGGTGGTATATATGGTGGA 59.027 41.667 0.00 0.00 0.00 4.02
450 551 5.063204 CACTGTTGGTGGTATATATGGTGG 58.937 45.833 0.00 0.00 41.90 4.61
451 552 5.924356 TCACTGTTGGTGGTATATATGGTG 58.076 41.667 0.00 0.00 45.38 4.17
452 553 5.903010 TCTCACTGTTGGTGGTATATATGGT 59.097 40.000 0.00 0.00 45.38 3.55
453 554 6.042093 ACTCTCACTGTTGGTGGTATATATGG 59.958 42.308 0.00 0.00 45.38 2.74
454 555 7.055667 ACTCTCACTGTTGGTGGTATATATG 57.944 40.000 0.00 0.00 45.38 1.78
455 556 7.202011 GGAACTCTCACTGTTGGTGGTATATAT 60.202 40.741 0.00 0.00 45.38 0.86
456 557 6.097839 GGAACTCTCACTGTTGGTGGTATATA 59.902 42.308 0.00 0.00 45.38 0.86
457 558 5.104900 GGAACTCTCACTGTTGGTGGTATAT 60.105 44.000 0.00 0.00 45.38 0.86
458 559 4.222145 GGAACTCTCACTGTTGGTGGTATA 59.778 45.833 0.00 0.00 45.38 1.47
459 560 3.008049 GGAACTCTCACTGTTGGTGGTAT 59.992 47.826 0.00 0.00 45.38 2.73
460 561 2.367567 GGAACTCTCACTGTTGGTGGTA 59.632 50.000 0.00 0.00 45.38 3.25
461 562 1.141053 GGAACTCTCACTGTTGGTGGT 59.859 52.381 0.00 0.00 45.38 4.16
462 563 1.140852 TGGAACTCTCACTGTTGGTGG 59.859 52.381 0.00 0.00 45.38 4.61
463 564 2.620251 TGGAACTCTCACTGTTGGTG 57.380 50.000 0.00 0.00 46.60 4.17
464 565 2.705658 TGATGGAACTCTCACTGTTGGT 59.294 45.455 0.00 0.00 0.00 3.67
465 566 3.407424 TGATGGAACTCTCACTGTTGG 57.593 47.619 0.00 0.00 0.00 3.77
468 569 9.319060 ACATATATATGATGGAACTCTCACTGT 57.681 33.333 26.05 0.00 37.15 3.55
469 570 9.583765 CACATATATATGATGGAACTCTCACTG 57.416 37.037 26.05 7.55 37.15 3.66
470 571 9.539194 TCACATATATATGATGGAACTCTCACT 57.461 33.333 26.05 0.00 37.15 3.41
471 572 9.800433 CTCACATATATATGATGGAACTCTCAC 57.200 37.037 26.05 0.00 37.15 3.51
472 573 9.759473 TCTCACATATATATGATGGAACTCTCA 57.241 33.333 26.05 4.97 37.15 3.27
474 575 9.766754 ACTCTCACATATATATGATGGAACTCT 57.233 33.333 26.05 0.88 37.15 3.24
475 576 9.800433 CACTCTCACATATATATGATGGAACTC 57.200 37.037 26.05 0.00 37.15 3.01
476 577 9.539194 TCACTCTCACATATATATGATGGAACT 57.461 33.333 26.05 2.24 37.15 3.01
479 580 9.705103 TCATCACTCTCACATATATATGATGGA 57.295 33.333 26.05 18.18 41.51 3.41
480 581 9.968870 CTCATCACTCTCACATATATATGATGG 57.031 37.037 26.05 15.54 41.51 3.51
483 584 9.972106 ACTCTCATCACTCTCACATATATATGA 57.028 33.333 26.05 7.67 37.15 2.15
486 587 9.579932 ACAACTCTCATCACTCTCACATATATA 57.420 33.333 0.00 0.00 0.00 0.86
487 588 8.476064 ACAACTCTCATCACTCTCACATATAT 57.524 34.615 0.00 0.00 0.00 0.86
488 589 7.888250 ACAACTCTCATCACTCTCACATATA 57.112 36.000 0.00 0.00 0.00 0.86
489 590 6.788598 ACAACTCTCATCACTCTCACATAT 57.211 37.500 0.00 0.00 0.00 1.78
490 591 6.596309 AACAACTCTCATCACTCTCACATA 57.404 37.500 0.00 0.00 0.00 2.29
491 592 5.480642 AACAACTCTCATCACTCTCACAT 57.519 39.130 0.00 0.00 0.00 3.21
492 593 4.944619 AACAACTCTCATCACTCTCACA 57.055 40.909 0.00 0.00 0.00 3.58
493 594 6.312426 CCAATAACAACTCTCATCACTCTCAC 59.688 42.308 0.00 0.00 0.00 3.51
494 595 6.211384 TCCAATAACAACTCTCATCACTCTCA 59.789 38.462 0.00 0.00 0.00 3.27
495 596 6.634805 TCCAATAACAACTCTCATCACTCTC 58.365 40.000 0.00 0.00 0.00 3.20
496 597 6.351711 CCTCCAATAACAACTCTCATCACTCT 60.352 42.308 0.00 0.00 0.00 3.24
497 598 5.814705 CCTCCAATAACAACTCTCATCACTC 59.185 44.000 0.00 0.00 0.00 3.51
498 599 5.485353 TCCTCCAATAACAACTCTCATCACT 59.515 40.000 0.00 0.00 0.00 3.41
499 600 5.734720 TCCTCCAATAACAACTCTCATCAC 58.265 41.667 0.00 0.00 0.00 3.06
500 601 6.213397 TCTTCCTCCAATAACAACTCTCATCA 59.787 38.462 0.00 0.00 0.00 3.07
501 602 6.644347 TCTTCCTCCAATAACAACTCTCATC 58.356 40.000 0.00 0.00 0.00 2.92
502 603 6.627087 TCTTCCTCCAATAACAACTCTCAT 57.373 37.500 0.00 0.00 0.00 2.90
503 604 6.433847 TTCTTCCTCCAATAACAACTCTCA 57.566 37.500 0.00 0.00 0.00 3.27
504 605 7.745620 TTTTCTTCCTCCAATAACAACTCTC 57.254 36.000 0.00 0.00 0.00 3.20
505 606 7.119846 CGATTTTCTTCCTCCAATAACAACTCT 59.880 37.037 0.00 0.00 0.00 3.24
506 607 7.094762 ACGATTTTCTTCCTCCAATAACAACTC 60.095 37.037 0.00 0.00 0.00 3.01
507 608 6.715264 ACGATTTTCTTCCTCCAATAACAACT 59.285 34.615 0.00 0.00 0.00 3.16
508 609 6.909909 ACGATTTTCTTCCTCCAATAACAAC 58.090 36.000 0.00 0.00 0.00 3.32
509 610 6.940298 AGACGATTTTCTTCCTCCAATAACAA 59.060 34.615 0.00 0.00 0.00 2.83
510 611 6.472887 AGACGATTTTCTTCCTCCAATAACA 58.527 36.000 0.00 0.00 0.00 2.41
511 612 6.986904 AGACGATTTTCTTCCTCCAATAAC 57.013 37.500 0.00 0.00 0.00 1.89
512 613 7.996098 AAAGACGATTTTCTTCCTCCAATAA 57.004 32.000 0.00 0.00 34.60 1.40
513 614 7.447238 ACAAAAGACGATTTTCTTCCTCCAATA 59.553 33.333 0.00 0.00 34.60 1.90
514 615 6.265422 ACAAAAGACGATTTTCTTCCTCCAAT 59.735 34.615 0.00 0.00 34.60 3.16
515 616 5.592688 ACAAAAGACGATTTTCTTCCTCCAA 59.407 36.000 0.00 0.00 34.60 3.53
516 617 5.130350 ACAAAAGACGATTTTCTTCCTCCA 58.870 37.500 0.00 0.00 34.60 3.86
517 618 5.614887 CGACAAAAGACGATTTTCTTCCTCC 60.615 44.000 0.00 0.00 34.60 4.30
518 619 5.176958 TCGACAAAAGACGATTTTCTTCCTC 59.823 40.000 0.00 0.00 34.60 3.71
519 620 5.054477 TCGACAAAAGACGATTTTCTTCCT 58.946 37.500 0.00 0.00 34.60 3.36
520 621 5.338614 TCGACAAAAGACGATTTTCTTCC 57.661 39.130 0.00 0.00 34.60 3.46
521 622 5.790495 CCATCGACAAAAGACGATTTTCTTC 59.210 40.000 0.00 0.00 44.93 2.87
522 623 5.689819 CCATCGACAAAAGACGATTTTCTT 58.310 37.500 0.00 0.00 44.93 2.52
523 624 4.378459 GCCATCGACAAAAGACGATTTTCT 60.378 41.667 0.00 0.00 44.93 2.52
524 625 3.846335 GCCATCGACAAAAGACGATTTTC 59.154 43.478 0.00 0.00 44.93 2.29
525 626 3.666902 CGCCATCGACAAAAGACGATTTT 60.667 43.478 0.00 0.00 44.93 1.82
526 627 2.159707 CGCCATCGACAAAAGACGATTT 60.160 45.455 0.00 0.00 44.93 2.17
527 628 1.393539 CGCCATCGACAAAAGACGATT 59.606 47.619 0.00 0.00 44.93 3.34
529 630 1.011968 CCGCCATCGACAAAAGACGA 61.012 55.000 0.00 0.00 42.49 4.20
530 631 1.289109 ACCGCCATCGACAAAAGACG 61.289 55.000 0.00 0.00 38.10 4.18
531 632 0.442699 GACCGCCATCGACAAAAGAC 59.557 55.000 0.00 0.00 38.10 3.01
532 633 1.011968 CGACCGCCATCGACAAAAGA 61.012 55.000 0.00 0.00 45.13 2.52
533 634 1.011968 TCGACCGCCATCGACAAAAG 61.012 55.000 2.96 0.00 45.84 2.27
534 635 1.005984 TCGACCGCCATCGACAAAA 60.006 52.632 2.96 0.00 45.84 2.44
535 636 2.651945 TCGACCGCCATCGACAAA 59.348 55.556 2.96 0.00 45.84 2.83
540 641 3.758088 CTCAGGTCGACCGCCATCG 62.758 68.421 28.26 13.70 43.63 3.84
541 642 2.105128 CTCAGGTCGACCGCCATC 59.895 66.667 28.26 3.91 42.08 3.51
542 643 4.148825 GCTCAGGTCGACCGCCAT 62.149 66.667 28.26 8.74 42.08 4.40
545 646 4.838486 CTCGCTCAGGTCGACCGC 62.838 72.222 28.26 23.44 42.08 5.68
546 647 2.852431 GAACTCGCTCAGGTCGACCG 62.852 65.000 28.26 22.00 42.08 4.79
547 648 1.153997 GAACTCGCTCAGGTCGACC 60.154 63.158 27.67 27.67 32.08 4.79
548 649 4.461784 GAACTCGCTCAGGTCGAC 57.538 61.111 7.13 7.13 32.08 4.20
551 652 0.241481 AAGACGAACTCGCTCAGGTC 59.759 55.000 0.00 0.00 44.43 3.85
552 653 1.531423 TAAGACGAACTCGCTCAGGT 58.469 50.000 0.00 0.00 44.43 4.00
553 654 2.097629 TCATAAGACGAACTCGCTCAGG 59.902 50.000 0.00 0.00 44.43 3.86
554 655 3.406728 TCATAAGACGAACTCGCTCAG 57.593 47.619 0.00 0.00 44.43 3.35
555 656 5.690997 ATATCATAAGACGAACTCGCTCA 57.309 39.130 0.00 0.00 44.43 4.26
556 657 5.728965 CGTATATCATAAGACGAACTCGCTC 59.271 44.000 0.00 0.00 44.43 5.03
557 658 5.178996 ACGTATATCATAAGACGAACTCGCT 59.821 40.000 8.96 0.00 44.43 4.93
558 659 5.380651 ACGTATATCATAAGACGAACTCGC 58.619 41.667 8.96 0.00 44.43 5.03
559 660 7.833284 AAACGTATATCATAAGACGAACTCG 57.167 36.000 8.96 0.00 46.33 4.18
561 662 9.577110 TGAAAAACGTATATCATAAGACGAACT 57.423 29.630 8.96 0.00 38.63 3.01
562 663 9.615779 GTGAAAAACGTATATCATAAGACGAAC 57.384 33.333 8.96 0.00 38.63 3.95
580 681 1.185189 GTCAACCGTGCGTGAAAAAC 58.815 50.000 0.00 0.00 0.00 2.43
581 682 1.062880 GAGTCAACCGTGCGTGAAAAA 59.937 47.619 0.00 0.00 0.00 1.94
582 683 0.653636 GAGTCAACCGTGCGTGAAAA 59.346 50.000 0.00 0.00 0.00 2.29
583 684 1.484227 CGAGTCAACCGTGCGTGAAA 61.484 55.000 0.00 0.00 0.00 2.69
584 685 1.947146 CGAGTCAACCGTGCGTGAA 60.947 57.895 0.00 0.00 0.00 3.18
585 686 2.354188 CGAGTCAACCGTGCGTGA 60.354 61.111 0.00 0.00 0.00 4.35
586 687 4.059459 GCGAGTCAACCGTGCGTG 62.059 66.667 0.00 0.00 0.00 5.34
589 690 4.980805 TGGGCGAGTCAACCGTGC 62.981 66.667 0.00 0.00 0.00 5.34
590 691 2.738521 CTGGGCGAGTCAACCGTG 60.739 66.667 0.00 0.00 0.00 4.94
591 692 4.681978 GCTGGGCGAGTCAACCGT 62.682 66.667 0.00 0.00 0.00 4.83
592 693 4.379243 AGCTGGGCGAGTCAACCG 62.379 66.667 0.00 0.00 0.00 4.44
593 694 2.435059 GAGCTGGGCGAGTCAACC 60.435 66.667 0.00 0.00 0.00 3.77
594 695 2.811317 CGAGCTGGGCGAGTCAAC 60.811 66.667 0.00 0.00 0.00 3.18
595 696 2.989253 TCGAGCTGGGCGAGTCAA 60.989 61.111 0.00 0.00 33.33 3.18
596 697 3.749064 GTCGAGCTGGGCGAGTCA 61.749 66.667 0.00 0.00 38.59 3.41
597 698 4.500116 GGTCGAGCTGGGCGAGTC 62.500 72.222 7.51 0.00 38.59 3.36
599 700 3.781770 GATGGTCGAGCTGGGCGAG 62.782 68.421 16.64 0.00 38.59 5.03
600 701 3.838271 GATGGTCGAGCTGGGCGA 61.838 66.667 16.64 0.00 35.08 5.54
601 702 4.147449 TGATGGTCGAGCTGGGCG 62.147 66.667 16.64 0.00 0.00 6.13
602 703 2.202987 CTGATGGTCGAGCTGGGC 60.203 66.667 16.64 0.00 0.00 5.36
603 704 2.202987 GCTGATGGTCGAGCTGGG 60.203 66.667 16.64 4.83 32.12 4.45
604 705 2.563050 TTCGCTGATGGTCGAGCTGG 62.563 60.000 16.64 0.00 36.02 4.85
605 706 0.737367 TTTCGCTGATGGTCGAGCTG 60.737 55.000 16.64 4.83 36.02 4.24
606 707 0.459237 CTTTCGCTGATGGTCGAGCT 60.459 55.000 16.64 0.97 36.02 4.09
607 708 0.737715 ACTTTCGCTGATGGTCGAGC 60.738 55.000 7.89 7.89 36.02 5.03
608 709 1.272781 GACTTTCGCTGATGGTCGAG 58.727 55.000 0.00 0.00 36.02 4.04
609 710 3.418675 GACTTTCGCTGATGGTCGA 57.581 52.632 0.00 0.00 0.00 4.20
610 711 1.991430 CGACTTTCGCTGATGGTCG 59.009 57.895 13.87 13.87 42.38 4.79
611 712 1.710013 TTCGACTTTCGCTGATGGTC 58.290 50.000 0.00 0.00 40.21 4.02
612 713 2.163818 TTTCGACTTTCGCTGATGGT 57.836 45.000 0.00 0.00 40.21 3.55
613 714 4.084328 GGATATTTCGACTTTCGCTGATGG 60.084 45.833 0.00 0.00 40.21 3.51
614 715 4.375405 CGGATATTTCGACTTTCGCTGATG 60.375 45.833 0.00 0.00 40.21 3.07
615 716 3.736252 CGGATATTTCGACTTTCGCTGAT 59.264 43.478 0.00 0.00 40.21 2.90
616 717 3.113322 CGGATATTTCGACTTTCGCTGA 58.887 45.455 0.00 0.00 40.21 4.26
617 718 2.858344 ACGGATATTTCGACTTTCGCTG 59.142 45.455 6.44 0.00 40.21 5.18
618 719 2.858344 CACGGATATTTCGACTTTCGCT 59.142 45.455 6.44 0.00 40.21 4.93
619 720 2.855963 TCACGGATATTTCGACTTTCGC 59.144 45.455 6.44 0.00 40.21 4.70
620 721 4.348656 TCTCACGGATATTTCGACTTTCG 58.651 43.478 6.44 0.00 42.10 3.46
621 722 7.113684 CACTATCTCACGGATATTTCGACTTTC 59.886 40.741 6.44 0.00 36.45 2.62
622 723 6.918569 CACTATCTCACGGATATTTCGACTTT 59.081 38.462 6.44 0.00 36.45 2.66
623 724 6.039493 ACACTATCTCACGGATATTTCGACTT 59.961 38.462 6.44 0.00 36.45 3.01
624 725 5.531659 ACACTATCTCACGGATATTTCGACT 59.468 40.000 6.44 0.00 36.45 4.18
625 726 5.759963 ACACTATCTCACGGATATTTCGAC 58.240 41.667 6.44 0.00 36.45 4.20
626 727 5.048921 GGACACTATCTCACGGATATTTCGA 60.049 44.000 6.44 0.00 36.45 3.71
627 728 5.154932 GGACACTATCTCACGGATATTTCG 58.845 45.833 0.00 0.00 36.45 3.46
628 729 6.085555 TGGACACTATCTCACGGATATTTC 57.914 41.667 0.00 0.00 36.45 2.17
629 730 6.672266 ATGGACACTATCTCACGGATATTT 57.328 37.500 0.00 0.00 36.45 1.40
630 731 6.719829 TGTATGGACACTATCTCACGGATATT 59.280 38.462 0.00 0.00 36.45 1.28
631 732 6.246163 TGTATGGACACTATCTCACGGATAT 58.754 40.000 0.00 0.00 36.45 1.63
632 733 5.627135 TGTATGGACACTATCTCACGGATA 58.373 41.667 0.00 0.00 35.98 2.59
633 734 4.470602 TGTATGGACACTATCTCACGGAT 58.529 43.478 0.00 0.00 38.38 4.18
634 735 3.893521 TGTATGGACACTATCTCACGGA 58.106 45.455 0.00 0.00 0.00 4.69
635 736 4.338400 TCTTGTATGGACACTATCTCACGG 59.662 45.833 0.00 0.00 34.48 4.94
636 737 5.500645 TCTTGTATGGACACTATCTCACG 57.499 43.478 0.00 0.00 34.48 4.35
637 738 6.754209 CAGTTCTTGTATGGACACTATCTCAC 59.246 42.308 0.00 0.00 34.48 3.51
638 739 6.437477 ACAGTTCTTGTATGGACACTATCTCA 59.563 38.462 0.00 0.00 38.56 3.27
639 740 6.754209 CACAGTTCTTGTATGGACACTATCTC 59.246 42.308 0.00 0.00 38.16 2.75
640 741 6.634805 CACAGTTCTTGTATGGACACTATCT 58.365 40.000 0.00 0.00 38.16 1.98
641 742 5.292101 GCACAGTTCTTGTATGGACACTATC 59.708 44.000 0.00 0.00 38.16 2.08
642 743 5.178797 GCACAGTTCTTGTATGGACACTAT 58.821 41.667 0.00 0.00 38.16 2.12
643 744 4.562757 GGCACAGTTCTTGTATGGACACTA 60.563 45.833 0.00 0.00 38.16 2.74
644 745 3.403038 GCACAGTTCTTGTATGGACACT 58.597 45.455 0.00 0.00 38.16 3.55
645 746 2.484264 GGCACAGTTCTTGTATGGACAC 59.516 50.000 0.00 0.00 38.16 3.67
646 747 2.105649 TGGCACAGTTCTTGTATGGACA 59.894 45.455 0.00 0.00 38.16 4.02
647 748 2.778299 TGGCACAGTTCTTGTATGGAC 58.222 47.619 0.00 0.00 38.16 4.02
662 763 0.321034 TGAGCTCACTGTCATGGCAC 60.321 55.000 13.74 0.00 0.00 5.01
663 764 0.036671 CTGAGCTCACTGTCATGGCA 60.037 55.000 13.74 0.00 0.00 4.92
664 765 0.248565 TCTGAGCTCACTGTCATGGC 59.751 55.000 13.74 0.00 0.00 4.40
665 766 2.798853 CGATCTGAGCTCACTGTCATGG 60.799 54.545 13.74 0.02 0.00 3.66
666 767 2.461903 CGATCTGAGCTCACTGTCATG 58.538 52.381 13.74 0.85 0.00 3.07
667 768 1.408340 CCGATCTGAGCTCACTGTCAT 59.592 52.381 13.74 0.00 0.00 3.06
668 769 0.813821 CCGATCTGAGCTCACTGTCA 59.186 55.000 13.74 0.00 0.00 3.58
669 770 1.098869 TCCGATCTGAGCTCACTGTC 58.901 55.000 13.74 9.98 0.00 3.51
670 771 0.814457 GTCCGATCTGAGCTCACTGT 59.186 55.000 13.74 0.87 0.00 3.55
671 772 0.248417 CGTCCGATCTGAGCTCACTG 60.248 60.000 13.74 4.21 0.00 3.66
672 773 0.393132 TCGTCCGATCTGAGCTCACT 60.393 55.000 13.74 2.58 0.00 3.41
673 774 0.665835 ATCGTCCGATCTGAGCTCAC 59.334 55.000 13.74 2.06 0.00 3.51
674 775 0.947960 GATCGTCCGATCTGAGCTCA 59.052 55.000 17.19 17.19 45.42 4.26
675 776 0.110419 CGATCGTCCGATCTGAGCTC 60.110 60.000 22.84 6.82 46.36 4.09
676 777 1.511318 CCGATCGTCCGATCTGAGCT 61.511 60.000 22.84 0.00 46.36 4.09
677 778 1.081774 CCGATCGTCCGATCTGAGC 60.082 63.158 22.84 2.45 46.36 4.26
678 779 0.040870 CACCGATCGTCCGATCTGAG 60.041 60.000 22.29 13.69 46.36 3.35
679 780 1.444917 CCACCGATCGTCCGATCTGA 61.445 60.000 22.29 0.00 46.36 3.27
680 781 1.008424 CCACCGATCGTCCGATCTG 60.008 63.158 22.84 19.55 46.36 2.90
681 782 2.846652 GCCACCGATCGTCCGATCT 61.847 63.158 22.84 6.82 46.36 2.75
682 783 2.354773 GCCACCGATCGTCCGATC 60.355 66.667 17.46 17.46 45.42 3.69
683 784 4.266070 CGCCACCGATCGTCCGAT 62.266 66.667 15.09 1.12 37.59 4.18
689 790 3.538028 ATACTCGCGCCACCGATCG 62.538 63.158 8.51 8.51 36.54 3.69
690 791 2.016704 CATACTCGCGCCACCGATC 61.017 63.158 0.00 0.00 36.54 3.69
691 792 1.806461 ATCATACTCGCGCCACCGAT 61.806 55.000 0.00 0.00 36.54 4.18
692 793 2.402282 GATCATACTCGCGCCACCGA 62.402 60.000 0.00 0.00 36.29 4.69
693 794 2.016704 GATCATACTCGCGCCACCG 61.017 63.158 0.00 0.00 37.57 4.94
694 795 2.016704 CGATCATACTCGCGCCACC 61.017 63.158 0.00 0.00 0.00 4.61
695 796 2.016704 CCGATCATACTCGCGCCAC 61.017 63.158 0.00 0.00 37.33 5.01
696 797 2.190841 TCCGATCATACTCGCGCCA 61.191 57.895 0.00 0.00 37.33 5.69
697 798 1.729838 GTCCGATCATACTCGCGCC 60.730 63.158 0.00 0.00 37.33 6.53
698 799 2.075489 CGTCCGATCATACTCGCGC 61.075 63.158 0.00 0.00 37.33 6.86
699 800 1.440518 CCGTCCGATCATACTCGCG 60.441 63.158 0.00 0.00 37.33 5.87
700 801 1.729838 GCCGTCCGATCATACTCGC 60.730 63.158 0.00 0.00 37.33 5.03
927 4702 3.894547 CTGGTACGCACCCACACCC 62.895 68.421 1.39 0.00 45.11 4.61
928 4703 2.358247 CTGGTACGCACCCACACC 60.358 66.667 1.39 0.00 45.11 4.16
929 4704 1.374252 CTCTGGTACGCACCCACAC 60.374 63.158 1.39 0.00 45.11 3.82
930 4705 1.116536 TTCTCTGGTACGCACCCACA 61.117 55.000 1.39 0.00 45.11 4.17
931 4706 0.249398 ATTCTCTGGTACGCACCCAC 59.751 55.000 1.39 0.00 45.11 4.61
932 4707 0.535335 GATTCTCTGGTACGCACCCA 59.465 55.000 1.39 0.00 45.11 4.51
933 4708 0.535335 TGATTCTCTGGTACGCACCC 59.465 55.000 1.39 0.00 45.11 4.61
934 4709 2.000447 GTTGATTCTCTGGTACGCACC 59.000 52.381 0.00 0.00 46.00 5.01
935 4710 1.654105 CGTTGATTCTCTGGTACGCAC 59.346 52.381 0.00 0.00 0.00 5.34
936 4711 1.542472 TCGTTGATTCTCTGGTACGCA 59.458 47.619 0.00 0.00 0.00 5.24
952 4727 1.402984 GCGATCTCCTGACTTGTCGTT 60.403 52.381 0.00 0.00 0.00 3.85
954 4729 0.453793 AGCGATCTCCTGACTTGTCG 59.546 55.000 0.00 0.00 0.00 4.35
989 4775 2.483538 GCCTGCTCCATCTCTTCTCTTC 60.484 54.545 0.00 0.00 0.00 2.87
1060 4863 1.478510 CGACAAGAGGCTCCACACTAT 59.521 52.381 11.71 0.00 0.00 2.12
1084 4887 0.392327 GTGGAGAAGGGCTTGAGCTC 60.392 60.000 6.82 6.82 43.28 4.09
2165 6002 2.362397 TCTCTCATGCAATCGGTCTACC 59.638 50.000 0.00 0.00 0.00 3.18
3053 7256 3.258228 CATGTACTTACCATGTCGTGCA 58.742 45.455 0.00 0.00 0.00 4.57
3285 7495 4.821532 ATTTCAGCCCCTTCCTATCATT 57.178 40.909 0.00 0.00 0.00 2.57
3448 7675 9.632638 ACCATTTTGCTACAGATAATGAATACT 57.367 29.630 0.00 0.00 0.00 2.12
3680 7931 0.821517 ATGGACACCGCGATGTCTAA 59.178 50.000 31.39 20.85 46.85 2.10
3733 7984 3.255725 CAATGGCGTGCAGATGAAATTT 58.744 40.909 0.00 0.00 0.00 1.82
3762 8013 0.765510 ATATTTCGGGACAGAGGGGC 59.234 55.000 0.00 0.00 0.00 5.80
3763 8014 3.901844 TCTTATATTTCGGGACAGAGGGG 59.098 47.826 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.