Multiple sequence alignment - TraesCS7D01G045300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G045300 chr7D 100.000 2548 0 0 1 2548 22902109 22899562 0.000000e+00 4706.0
1 TraesCS7D01G045300 chr7D 94.188 1996 90 16 574 2548 90563634 90561644 0.000000e+00 3020.0
2 TraesCS7D01G045300 chr7D 93.066 1918 81 31 655 2548 605599928 605601817 0.000000e+00 2758.0
3 TraesCS7D01G045300 chr7D 94.902 1726 72 11 571 2291 574727119 574725405 0.000000e+00 2686.0
4 TraesCS7D01G045300 chr1D 94.032 1994 72 22 572 2548 25464319 25466282 0.000000e+00 2979.0
5 TraesCS7D01G045300 chr1D 90.420 1764 126 26 566 2295 451673409 451671655 0.000000e+00 2281.0
6 TraesCS7D01G045300 chr1D 90.193 1764 131 25 566 2295 451655800 451654045 0.000000e+00 2261.0
7 TraesCS7D01G045300 chr3D 93.143 1998 93 29 566 2548 546485989 546487957 0.000000e+00 2891.0
8 TraesCS7D01G045300 chr4D 95.389 1735 63 9 571 2290 43272764 43271032 0.000000e+00 2745.0
9 TraesCS7D01G045300 chr5D 95.304 1725 65 10 571 2290 520497540 520495827 0.000000e+00 2723.0
10 TraesCS7D01G045300 chr5D 95.125 1723 68 8 572 2289 336262624 336264335 0.000000e+00 2702.0
11 TraesCS7D01G045300 chr5D 95.122 1517 59 9 1045 2548 363888332 363889846 0.000000e+00 2377.0
12 TraesCS7D01G045300 chr2B 91.328 1995 114 28 568 2548 485690848 485692797 0.000000e+00 2671.0
13 TraesCS7D01G045300 chr2B 94.297 1736 81 12 567 2295 4739872 4741596 0.000000e+00 2641.0
14 TraesCS7D01G045300 chr3A 94.591 1738 72 14 567 2295 617401017 617402741 0.000000e+00 2669.0
15 TraesCS7D01G045300 chr3A 94.310 1740 81 10 563 2295 54951908 54953636 0.000000e+00 2649.0
16 TraesCS7D01G045300 chr6A 94.365 1739 80 10 563 2295 616131287 616133013 0.000000e+00 2652.0
17 TraesCS7D01G045300 chr6A 84.706 85 11 2 473 556 575049666 575049749 1.620000e-12 84.2
18 TraesCS7D01G045300 chr7B 94.458 1624 73 11 937 2545 702337626 702339247 0.000000e+00 2484.0
19 TraesCS7D01G045300 chr7B 93.881 621 24 7 1939 2548 663203479 663204096 0.000000e+00 924.0
20 TraesCS7D01G045300 chr1B 94.531 384 14 4 1911 2290 372945795 372945415 1.020000e-163 586.0
21 TraesCS7D01G045300 chr1B 94.872 39 2 0 518 556 420996558 420996596 7.610000e-06 62.1
22 TraesCS7D01G045300 chr7A 91.262 206 17 1 212 417 23360254 23360050 1.930000e-71 279.0
23 TraesCS7D01G045300 chr7A 89.595 173 17 1 4 176 23360395 23360224 4.270000e-53 219.0
24 TraesCS7D01G045300 chr7A 96.226 53 2 0 464 516 23359705 23359653 1.260000e-13 87.9
25 TraesCS7D01G045300 chr5A 89.706 204 11 3 214 417 41959264 41959071 4.210000e-63 252.0
26 TraesCS7D01G045300 chr5A 87.166 187 17 4 1 187 41959405 41959226 3.320000e-49 206.0
27 TraesCS7D01G045300 chr5A 83.571 140 13 2 414 543 41958771 41958632 3.440000e-24 122.0
28 TraesCS7D01G045300 chr4A 89.216 204 10 4 214 417 706607864 706608055 7.040000e-61 244.0
29 TraesCS7D01G045300 chr4A 87.701 187 16 4 1 187 706607723 706607902 7.140000e-51 211.0
30 TraesCS7D01G045300 chr4A 98.039 51 1 0 126 176 706928740 706928690 3.490000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G045300 chr7D 22899562 22902109 2547 True 4706 4706 100.000 1 2548 1 chr7D.!!$R1 2547
1 TraesCS7D01G045300 chr7D 90561644 90563634 1990 True 3020 3020 94.188 574 2548 1 chr7D.!!$R2 1974
2 TraesCS7D01G045300 chr7D 605599928 605601817 1889 False 2758 2758 93.066 655 2548 1 chr7D.!!$F1 1893
3 TraesCS7D01G045300 chr7D 574725405 574727119 1714 True 2686 2686 94.902 571 2291 1 chr7D.!!$R3 1720
4 TraesCS7D01G045300 chr1D 25464319 25466282 1963 False 2979 2979 94.032 572 2548 1 chr1D.!!$F1 1976
5 TraesCS7D01G045300 chr1D 451671655 451673409 1754 True 2281 2281 90.420 566 2295 1 chr1D.!!$R2 1729
6 TraesCS7D01G045300 chr1D 451654045 451655800 1755 True 2261 2261 90.193 566 2295 1 chr1D.!!$R1 1729
7 TraesCS7D01G045300 chr3D 546485989 546487957 1968 False 2891 2891 93.143 566 2548 1 chr3D.!!$F1 1982
8 TraesCS7D01G045300 chr4D 43271032 43272764 1732 True 2745 2745 95.389 571 2290 1 chr4D.!!$R1 1719
9 TraesCS7D01G045300 chr5D 520495827 520497540 1713 True 2723 2723 95.304 571 2290 1 chr5D.!!$R1 1719
10 TraesCS7D01G045300 chr5D 336262624 336264335 1711 False 2702 2702 95.125 572 2289 1 chr5D.!!$F1 1717
11 TraesCS7D01G045300 chr5D 363888332 363889846 1514 False 2377 2377 95.122 1045 2548 1 chr5D.!!$F2 1503
12 TraesCS7D01G045300 chr2B 485690848 485692797 1949 False 2671 2671 91.328 568 2548 1 chr2B.!!$F2 1980
13 TraesCS7D01G045300 chr2B 4739872 4741596 1724 False 2641 2641 94.297 567 2295 1 chr2B.!!$F1 1728
14 TraesCS7D01G045300 chr3A 617401017 617402741 1724 False 2669 2669 94.591 567 2295 1 chr3A.!!$F2 1728
15 TraesCS7D01G045300 chr3A 54951908 54953636 1728 False 2649 2649 94.310 563 2295 1 chr3A.!!$F1 1732
16 TraesCS7D01G045300 chr6A 616131287 616133013 1726 False 2652 2652 94.365 563 2295 1 chr6A.!!$F2 1732
17 TraesCS7D01G045300 chr7B 702337626 702339247 1621 False 2484 2484 94.458 937 2545 1 chr7B.!!$F2 1608
18 TraesCS7D01G045300 chr7B 663203479 663204096 617 False 924 924 93.881 1939 2548 1 chr7B.!!$F1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 271 0.033642 TACCAAACATGACCGCACGA 59.966 50.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 1922 0.25051 GCCCATTAGTCTAGCCTGCC 60.251 60.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.296265 GCGGGTTGTTCTTCCGAT 57.704 55.556 5.11 0.00 45.96 4.18
18 19 3.446507 GCGGGTTGTTCTTCCGATA 57.553 52.632 5.11 0.00 45.96 2.92
19 20 1.287425 GCGGGTTGTTCTTCCGATAG 58.713 55.000 5.11 0.00 45.96 2.08
31 32 3.956377 CGATAGGTGGGAGGCTGT 58.044 61.111 0.00 0.00 0.00 4.40
32 33 1.443407 CGATAGGTGGGAGGCTGTG 59.557 63.158 0.00 0.00 0.00 3.66
33 34 1.330655 CGATAGGTGGGAGGCTGTGT 61.331 60.000 0.00 0.00 0.00 3.72
34 35 0.466124 GATAGGTGGGAGGCTGTGTC 59.534 60.000 0.00 0.00 0.00 3.67
35 36 0.252696 ATAGGTGGGAGGCTGTGTCA 60.253 55.000 0.00 0.00 0.00 3.58
36 37 0.904865 TAGGTGGGAGGCTGTGTCAG 60.905 60.000 0.00 0.00 34.12 3.51
37 38 2.520536 GGTGGGAGGCTGTGTCAGT 61.521 63.158 0.00 0.00 33.43 3.41
38 39 1.302033 GTGGGAGGCTGTGTCAGTG 60.302 63.158 0.00 0.00 33.43 3.66
39 40 1.459348 TGGGAGGCTGTGTCAGTGA 60.459 57.895 0.00 0.00 33.43 3.41
40 41 1.053835 TGGGAGGCTGTGTCAGTGAA 61.054 55.000 0.00 0.00 33.43 3.18
41 42 0.603975 GGGAGGCTGTGTCAGTGAAC 60.604 60.000 0.00 0.00 33.43 3.18
42 43 0.106708 GGAGGCTGTGTCAGTGAACA 59.893 55.000 0.00 1.27 33.43 3.18
43 44 1.475034 GGAGGCTGTGTCAGTGAACAA 60.475 52.381 0.00 0.00 33.43 2.83
44 45 1.599542 GAGGCTGTGTCAGTGAACAAC 59.400 52.381 0.00 0.00 33.43 3.32
45 46 1.210478 AGGCTGTGTCAGTGAACAACT 59.790 47.619 0.00 1.34 40.93 3.16
46 47 2.434336 AGGCTGTGTCAGTGAACAACTA 59.566 45.455 0.00 0.00 36.83 2.24
47 48 2.544267 GGCTGTGTCAGTGAACAACTAC 59.456 50.000 0.00 0.00 36.83 2.73
48 49 2.218759 GCTGTGTCAGTGAACAACTACG 59.781 50.000 0.00 0.00 36.83 3.51
49 50 3.444916 CTGTGTCAGTGAACAACTACGT 58.555 45.455 0.00 0.00 36.83 3.57
50 51 4.603985 CTGTGTCAGTGAACAACTACGTA 58.396 43.478 0.00 0.00 36.83 3.57
51 52 4.353737 TGTGTCAGTGAACAACTACGTAC 58.646 43.478 0.00 0.00 36.83 3.67
52 53 4.142425 TGTGTCAGTGAACAACTACGTACA 60.142 41.667 0.00 0.00 36.83 2.90
53 54 4.205792 GTGTCAGTGAACAACTACGTACAC 59.794 45.833 0.00 4.13 36.83 2.90
54 55 4.142425 TGTCAGTGAACAACTACGTACACA 60.142 41.667 12.52 0.00 36.83 3.72
55 56 4.980434 GTCAGTGAACAACTACGTACACAT 59.020 41.667 12.52 0.00 36.83 3.21
56 57 5.461078 GTCAGTGAACAACTACGTACACATT 59.539 40.000 12.52 0.00 36.83 2.71
57 58 5.688621 TCAGTGAACAACTACGTACACATTC 59.311 40.000 12.52 6.33 36.83 2.67
58 59 5.460748 CAGTGAACAACTACGTACACATTCA 59.539 40.000 12.52 8.37 36.83 2.57
59 60 5.461078 AGTGAACAACTACGTACACATTCAC 59.539 40.000 20.19 20.19 43.11 3.18
60 61 4.746115 TGAACAACTACGTACACATTCACC 59.254 41.667 0.00 0.00 0.00 4.02
61 62 4.595762 ACAACTACGTACACATTCACCT 57.404 40.909 0.00 0.00 0.00 4.00
62 63 4.952460 ACAACTACGTACACATTCACCTT 58.048 39.130 0.00 0.00 0.00 3.50
63 64 5.362263 ACAACTACGTACACATTCACCTTT 58.638 37.500 0.00 0.00 0.00 3.11
64 65 6.514947 ACAACTACGTACACATTCACCTTTA 58.485 36.000 0.00 0.00 0.00 1.85
65 66 6.985645 ACAACTACGTACACATTCACCTTTAA 59.014 34.615 0.00 0.00 0.00 1.52
66 67 7.042523 ACAACTACGTACACATTCACCTTTAAC 60.043 37.037 0.00 0.00 0.00 2.01
67 68 6.514947 ACTACGTACACATTCACCTTTAACA 58.485 36.000 0.00 0.00 0.00 2.41
68 69 5.917541 ACGTACACATTCACCTTTAACAG 57.082 39.130 0.00 0.00 0.00 3.16
69 70 5.362263 ACGTACACATTCACCTTTAACAGT 58.638 37.500 0.00 0.00 0.00 3.55
70 71 6.514947 ACGTACACATTCACCTTTAACAGTA 58.485 36.000 0.00 0.00 0.00 2.74
71 72 6.643770 ACGTACACATTCACCTTTAACAGTAG 59.356 38.462 0.00 0.00 0.00 2.57
72 73 6.864685 CGTACACATTCACCTTTAACAGTAGA 59.135 38.462 0.00 0.00 0.00 2.59
73 74 7.544566 CGTACACATTCACCTTTAACAGTAGAT 59.455 37.037 0.00 0.00 0.00 1.98
74 75 7.672983 ACACATTCACCTTTAACAGTAGATG 57.327 36.000 0.00 0.00 0.00 2.90
75 76 7.224297 ACACATTCACCTTTAACAGTAGATGT 58.776 34.615 0.00 0.00 46.97 3.06
76 77 8.372459 ACACATTCACCTTTAACAGTAGATGTA 58.628 33.333 0.00 0.00 43.00 2.29
77 78 9.383519 CACATTCACCTTTAACAGTAGATGTAT 57.616 33.333 0.00 0.00 43.00 2.29
78 79 9.383519 ACATTCACCTTTAACAGTAGATGTATG 57.616 33.333 0.00 0.00 43.00 2.39
79 80 9.599866 CATTCACCTTTAACAGTAGATGTATGA 57.400 33.333 0.00 0.00 43.00 2.15
81 82 8.997621 TCACCTTTAACAGTAGATGTATGAAC 57.002 34.615 0.00 0.00 43.00 3.18
82 83 8.812972 TCACCTTTAACAGTAGATGTATGAACT 58.187 33.333 0.00 0.00 43.00 3.01
83 84 9.436957 CACCTTTAACAGTAGATGTATGAACTT 57.563 33.333 0.00 0.00 43.00 2.66
102 103 8.527567 TGAACTTAATTTATTCCTTTTTGCGG 57.472 30.769 0.00 0.00 0.00 5.69
103 104 7.600752 TGAACTTAATTTATTCCTTTTTGCGGG 59.399 33.333 0.00 0.00 0.00 6.13
104 105 6.999950 ACTTAATTTATTCCTTTTTGCGGGT 58.000 32.000 0.00 0.00 0.00 5.28
105 106 6.871492 ACTTAATTTATTCCTTTTTGCGGGTG 59.129 34.615 0.00 0.00 0.00 4.61
106 107 5.476091 AATTTATTCCTTTTTGCGGGTGA 57.524 34.783 0.00 0.00 0.00 4.02
107 108 4.939052 TTTATTCCTTTTTGCGGGTGAA 57.061 36.364 0.00 0.00 0.00 3.18
108 109 2.812358 ATTCCTTTTTGCGGGTGAAC 57.188 45.000 0.00 0.00 0.00 3.18
109 110 1.475403 TTCCTTTTTGCGGGTGAACA 58.525 45.000 0.00 0.00 0.00 3.18
110 111 1.698506 TCCTTTTTGCGGGTGAACAT 58.301 45.000 0.00 0.00 0.00 2.71
111 112 1.339610 TCCTTTTTGCGGGTGAACATG 59.660 47.619 0.00 0.00 0.00 3.21
112 113 1.339610 CCTTTTTGCGGGTGAACATGA 59.660 47.619 0.00 0.00 0.00 3.07
113 114 2.223923 CCTTTTTGCGGGTGAACATGAA 60.224 45.455 0.00 0.00 0.00 2.57
114 115 2.500509 TTTTGCGGGTGAACATGAAC 57.499 45.000 0.00 0.00 0.00 3.18
115 116 1.686355 TTTGCGGGTGAACATGAACT 58.314 45.000 0.00 0.00 0.00 3.01
116 117 1.686355 TTGCGGGTGAACATGAACTT 58.314 45.000 0.00 0.00 0.00 2.66
117 118 2.552599 TGCGGGTGAACATGAACTTA 57.447 45.000 0.00 0.00 0.00 2.24
118 119 2.852449 TGCGGGTGAACATGAACTTAA 58.148 42.857 0.00 0.00 0.00 1.85
119 120 3.417101 TGCGGGTGAACATGAACTTAAT 58.583 40.909 0.00 0.00 0.00 1.40
120 121 3.823873 TGCGGGTGAACATGAACTTAATT 59.176 39.130 0.00 0.00 0.00 1.40
121 122 4.279671 TGCGGGTGAACATGAACTTAATTT 59.720 37.500 0.00 0.00 0.00 1.82
122 123 5.221342 TGCGGGTGAACATGAACTTAATTTT 60.221 36.000 0.00 0.00 0.00 1.82
123 124 5.118510 GCGGGTGAACATGAACTTAATTTTG 59.881 40.000 0.00 0.00 0.00 2.44
124 125 6.442952 CGGGTGAACATGAACTTAATTTTGA 58.557 36.000 0.00 0.00 0.00 2.69
125 126 6.920758 CGGGTGAACATGAACTTAATTTTGAA 59.079 34.615 0.00 0.00 0.00 2.69
126 127 7.096230 CGGGTGAACATGAACTTAATTTTGAAC 60.096 37.037 0.00 0.00 0.00 3.18
127 128 7.708752 GGGTGAACATGAACTTAATTTTGAACA 59.291 33.333 0.00 0.00 0.00 3.18
128 129 8.539674 GGTGAACATGAACTTAATTTTGAACAC 58.460 33.333 0.00 0.00 0.00 3.32
129 130 9.081997 GTGAACATGAACTTAATTTTGAACACA 57.918 29.630 0.00 0.00 0.00 3.72
130 131 9.645059 TGAACATGAACTTAATTTTGAACACAA 57.355 25.926 0.00 0.00 0.00 3.33
133 134 9.598517 ACATGAACTTAATTTTGAACACAATGT 57.401 25.926 0.00 0.00 0.00 2.71
134 135 9.852481 CATGAACTTAATTTTGAACACAATGTG 57.148 29.630 12.40 12.40 39.75 3.21
135 136 9.814899 ATGAACTTAATTTTGAACACAATGTGA 57.185 25.926 21.34 0.00 36.96 3.58
136 137 9.645059 TGAACTTAATTTTGAACACAATGTGAA 57.355 25.926 21.34 3.54 36.96 3.18
146 147 9.462174 TTTGAACACAATGTGAAATATTCAGAC 57.538 29.630 21.34 0.00 41.01 3.51
147 148 8.164058 TGAACACAATGTGAAATATTCAGACA 57.836 30.769 21.34 0.00 41.01 3.41
148 149 8.075574 TGAACACAATGTGAAATATTCAGACAC 58.924 33.333 21.34 0.00 41.01 3.67
149 150 7.509141 ACACAATGTGAAATATTCAGACACA 57.491 32.000 21.34 14.94 43.70 3.72
150 151 7.939782 ACACAATGTGAAATATTCAGACACAA 58.060 30.769 21.34 6.08 43.02 3.33
151 152 7.862372 ACACAATGTGAAATATTCAGACACAAC 59.138 33.333 21.34 0.00 43.02 3.32
152 153 7.861872 CACAATGTGAAATATTCAGACACAACA 59.138 33.333 7.78 0.00 43.02 3.33
153 154 8.579006 ACAATGTGAAATATTCAGACACAACAT 58.421 29.630 15.89 0.00 43.02 2.71
156 157 7.751732 TGTGAAATATTCAGACACAACATAGC 58.248 34.615 12.10 0.00 41.01 2.97
157 158 7.390162 TGTGAAATATTCAGACACAACATAGCA 59.610 33.333 12.10 0.00 41.01 3.49
158 159 8.400947 GTGAAATATTCAGACACAACATAGCAT 58.599 33.333 0.00 0.00 41.01 3.79
159 160 9.612066 TGAAATATTCAGACACAACATAGCATA 57.388 29.630 0.00 0.00 34.08 3.14
163 164 7.928307 ATTCAGACACAACATAGCATAAACT 57.072 32.000 0.00 0.00 0.00 2.66
164 165 6.968131 TCAGACACAACATAGCATAAACTC 57.032 37.500 0.00 0.00 0.00 3.01
165 166 6.701340 TCAGACACAACATAGCATAAACTCT 58.299 36.000 0.00 0.00 0.00 3.24
166 167 7.836842 TCAGACACAACATAGCATAAACTCTA 58.163 34.615 0.00 0.00 0.00 2.43
167 168 8.311109 TCAGACACAACATAGCATAAACTCTAA 58.689 33.333 0.00 0.00 0.00 2.10
168 169 8.935844 CAGACACAACATAGCATAAACTCTAAA 58.064 33.333 0.00 0.00 0.00 1.85
169 170 9.672673 AGACACAACATAGCATAAACTCTAAAT 57.327 29.630 0.00 0.00 0.00 1.40
174 175 9.849607 CAACATAGCATAAACTCTAAATACACG 57.150 33.333 0.00 0.00 0.00 4.49
175 176 9.595823 AACATAGCATAAACTCTAAATACACGT 57.404 29.630 0.00 0.00 0.00 4.49
176 177 9.031360 ACATAGCATAAACTCTAAATACACGTG 57.969 33.333 15.48 15.48 0.00 4.49
177 178 9.244799 CATAGCATAAACTCTAAATACACGTGA 57.755 33.333 25.01 6.34 0.00 4.35
178 179 9.811995 ATAGCATAAACTCTAAATACACGTGAA 57.188 29.630 25.01 0.87 0.00 3.18
179 180 7.960793 AGCATAAACTCTAAATACACGTGAAC 58.039 34.615 25.01 0.00 0.00 3.18
180 181 7.601130 AGCATAAACTCTAAATACACGTGAACA 59.399 33.333 25.01 7.16 0.00 3.18
181 182 7.686938 GCATAAACTCTAAATACACGTGAACAC 59.313 37.037 25.01 0.00 0.00 3.32
182 183 8.705134 CATAAACTCTAAATACACGTGAACACA 58.295 33.333 25.01 3.13 0.00 3.72
183 184 7.542534 AAACTCTAAATACACGTGAACACAA 57.457 32.000 25.01 1.83 0.00 3.33
184 185 6.520792 ACTCTAAATACACGTGAACACAAC 57.479 37.500 25.01 0.00 0.00 3.32
185 186 6.044046 ACTCTAAATACACGTGAACACAACA 58.956 36.000 25.01 0.00 0.00 3.33
186 187 6.704493 ACTCTAAATACACGTGAACACAACAT 59.296 34.615 25.01 0.00 0.00 2.71
187 188 7.868922 ACTCTAAATACACGTGAACACAACATA 59.131 33.333 25.01 0.26 0.00 2.29
188 189 8.234887 TCTAAATACACGTGAACACAACATAG 57.765 34.615 25.01 10.97 0.00 2.23
189 190 4.921470 ATACACGTGAACACAACATAGC 57.079 40.909 25.01 0.00 0.00 2.97
190 191 2.556257 ACACGTGAACACAACATAGCA 58.444 42.857 25.01 0.00 0.00 3.49
191 192 3.138304 ACACGTGAACACAACATAGCAT 58.862 40.909 25.01 0.00 0.00 3.79
192 193 3.058983 ACACGTGAACACAACATAGCATG 60.059 43.478 25.01 0.00 0.00 4.06
193 194 3.186205 CACGTGAACACAACATAGCATGA 59.814 43.478 10.90 0.00 0.00 3.07
194 195 3.812609 ACGTGAACACAACATAGCATGAA 59.187 39.130 0.00 0.00 0.00 2.57
195 196 4.151070 CGTGAACACAACATAGCATGAAC 58.849 43.478 0.00 0.00 0.00 3.18
196 197 4.083855 CGTGAACACAACATAGCATGAACT 60.084 41.667 0.00 0.00 0.00 3.01
197 198 5.385617 GTGAACACAACATAGCATGAACTC 58.614 41.667 0.00 0.00 0.00 3.01
198 199 4.455533 TGAACACAACATAGCATGAACTCC 59.544 41.667 0.00 0.00 0.00 3.85
199 200 4.019792 ACACAACATAGCATGAACTCCA 57.980 40.909 0.00 0.00 0.00 3.86
200 201 4.397420 ACACAACATAGCATGAACTCCAA 58.603 39.130 0.00 0.00 0.00 3.53
201 202 4.826733 ACACAACATAGCATGAACTCCAAA 59.173 37.500 0.00 0.00 0.00 3.28
202 203 5.156355 CACAACATAGCATGAACTCCAAAC 58.844 41.667 0.00 0.00 0.00 2.93
203 204 4.826733 ACAACATAGCATGAACTCCAAACA 59.173 37.500 0.00 0.00 0.00 2.83
204 205 5.156355 CAACATAGCATGAACTCCAAACAC 58.844 41.667 0.00 0.00 0.00 3.32
205 206 4.397420 ACATAGCATGAACTCCAAACACA 58.603 39.130 0.00 0.00 0.00 3.72
206 207 4.216257 ACATAGCATGAACTCCAAACACAC 59.784 41.667 0.00 0.00 0.00 3.82
207 208 1.603802 AGCATGAACTCCAAACACACG 59.396 47.619 0.00 0.00 0.00 4.49
208 209 1.333619 GCATGAACTCCAAACACACGT 59.666 47.619 0.00 0.00 0.00 4.49
209 210 2.854424 GCATGAACTCCAAACACACGTG 60.854 50.000 15.48 15.48 0.00 4.49
210 211 2.388310 TGAACTCCAAACACACGTGA 57.612 45.000 25.01 0.00 0.00 4.35
211 212 2.701107 TGAACTCCAAACACACGTGAA 58.299 42.857 25.01 0.00 0.00 3.18
212 213 2.417239 TGAACTCCAAACACACGTGAAC 59.583 45.455 25.01 0.17 0.00 3.18
213 214 2.102070 ACTCCAAACACACGTGAACA 57.898 45.000 25.01 0.00 0.00 3.18
214 215 1.735571 ACTCCAAACACACGTGAACAC 59.264 47.619 25.01 0.00 0.00 3.32
215 216 1.735018 CTCCAAACACACGTGAACACA 59.265 47.619 25.01 0.00 0.00 3.72
216 217 2.152016 TCCAAACACACGTGAACACAA 58.848 42.857 25.01 0.00 0.00 3.33
217 218 2.095668 TCCAAACACACGTGAACACAAC 60.096 45.455 25.01 0.00 0.00 3.32
218 219 2.350868 CCAAACACACGTGAACACAACA 60.351 45.455 25.01 0.00 0.00 3.33
219 220 3.497118 CAAACACACGTGAACACAACAT 58.503 40.909 25.01 0.00 0.00 2.71
220 221 4.437524 CCAAACACACGTGAACACAACATA 60.438 41.667 25.01 0.00 0.00 2.29
221 222 4.530094 AACACACGTGAACACAACATAG 57.470 40.909 25.01 0.00 0.00 2.23
222 223 2.286833 ACACACGTGAACACAACATAGC 59.713 45.455 25.01 0.00 0.00 2.97
223 224 2.286563 CACACGTGAACACAACATAGCA 59.713 45.455 25.01 0.00 0.00 3.49
224 225 3.058983 CACACGTGAACACAACATAGCAT 60.059 43.478 25.01 0.00 0.00 3.79
225 226 4.151512 CACACGTGAACACAACATAGCATA 59.848 41.667 25.01 0.00 0.00 3.14
226 227 4.752604 ACACGTGAACACAACATAGCATAA 59.247 37.500 25.01 0.00 0.00 1.90
227 228 5.237561 ACACGTGAACACAACATAGCATAAA 59.762 36.000 25.01 0.00 0.00 1.40
228 229 5.563751 CACGTGAACACAACATAGCATAAAC 59.436 40.000 10.90 0.00 0.00 2.01
229 230 5.468746 ACGTGAACACAACATAGCATAAACT 59.531 36.000 5.80 0.00 0.00 2.66
230 231 6.015504 CGTGAACACAACATAGCATAAACTC 58.984 40.000 5.80 0.00 0.00 3.01
231 232 6.314784 GTGAACACAACATAGCATAAACTCC 58.685 40.000 0.00 0.00 0.00 3.85
232 233 6.000840 TGAACACAACATAGCATAAACTCCA 58.999 36.000 0.00 0.00 0.00 3.86
233 234 6.488344 TGAACACAACATAGCATAAACTCCAA 59.512 34.615 0.00 0.00 0.00 3.53
234 235 6.892658 ACACAACATAGCATAAACTCCAAA 57.107 33.333 0.00 0.00 0.00 3.28
235 236 6.677913 ACACAACATAGCATAAACTCCAAAC 58.322 36.000 0.00 0.00 0.00 2.93
236 237 6.264292 ACACAACATAGCATAAACTCCAAACA 59.736 34.615 0.00 0.00 0.00 2.83
237 238 6.582295 CACAACATAGCATAAACTCCAAACAC 59.418 38.462 0.00 0.00 0.00 3.32
238 239 6.264292 ACAACATAGCATAAACTCCAAACACA 59.736 34.615 0.00 0.00 0.00 3.72
239 240 6.254281 ACATAGCATAAACTCCAAACACAC 57.746 37.500 0.00 0.00 0.00 3.82
240 241 6.003950 ACATAGCATAAACTCCAAACACACT 58.996 36.000 0.00 0.00 0.00 3.55
241 242 6.490040 ACATAGCATAAACTCCAAACACACTT 59.510 34.615 0.00 0.00 0.00 3.16
242 243 5.852282 AGCATAAACTCCAAACACACTTT 57.148 34.783 0.00 0.00 0.00 2.66
243 244 5.831997 AGCATAAACTCCAAACACACTTTC 58.168 37.500 0.00 0.00 0.00 2.62
244 245 5.359576 AGCATAAACTCCAAACACACTTTCA 59.640 36.000 0.00 0.00 0.00 2.69
245 246 6.039616 GCATAAACTCCAAACACACTTTCAA 58.960 36.000 0.00 0.00 0.00 2.69
246 247 6.019881 GCATAAACTCCAAACACACTTTCAAC 60.020 38.462 0.00 0.00 0.00 3.18
247 248 5.461032 AAACTCCAAACACACTTTCAACA 57.539 34.783 0.00 0.00 0.00 3.33
248 249 5.659440 AACTCCAAACACACTTTCAACAT 57.341 34.783 0.00 0.00 0.00 2.71
249 250 6.767524 AACTCCAAACACACTTTCAACATA 57.232 33.333 0.00 0.00 0.00 2.29
250 251 6.377327 ACTCCAAACACACTTTCAACATAG 57.623 37.500 0.00 0.00 0.00 2.23
251 252 5.885912 ACTCCAAACACACTTTCAACATAGT 59.114 36.000 0.00 0.00 0.00 2.12
252 253 7.051623 ACTCCAAACACACTTTCAACATAGTA 58.948 34.615 0.00 0.00 0.00 1.82
253 254 7.012044 ACTCCAAACACACTTTCAACATAGTAC 59.988 37.037 0.00 0.00 0.00 2.73
254 255 6.261381 TCCAAACACACTTTCAACATAGTACC 59.739 38.462 0.00 0.00 0.00 3.34
255 256 6.038825 CCAAACACACTTTCAACATAGTACCA 59.961 38.462 0.00 0.00 0.00 3.25
256 257 7.415765 CCAAACACACTTTCAACATAGTACCAA 60.416 37.037 0.00 0.00 0.00 3.67
257 258 7.633193 AACACACTTTCAACATAGTACCAAA 57.367 32.000 0.00 0.00 0.00 3.28
258 259 7.023197 ACACACTTTCAACATAGTACCAAAC 57.977 36.000 0.00 0.00 0.00 2.93
259 260 6.600032 ACACACTTTCAACATAGTACCAAACA 59.400 34.615 0.00 0.00 0.00 2.83
260 261 7.284489 ACACACTTTCAACATAGTACCAAACAT 59.716 33.333 0.00 0.00 0.00 2.71
261 262 7.591057 CACACTTTCAACATAGTACCAAACATG 59.409 37.037 0.00 0.00 0.00 3.21
262 263 7.500892 ACACTTTCAACATAGTACCAAACATGA 59.499 33.333 0.00 0.00 0.00 3.07
263 264 7.803189 CACTTTCAACATAGTACCAAACATGAC 59.197 37.037 0.00 0.00 0.00 3.06
264 265 6.811253 TTCAACATAGTACCAAACATGACC 57.189 37.500 0.00 0.00 0.00 4.02
265 266 4.932799 TCAACATAGTACCAAACATGACCG 59.067 41.667 0.00 0.00 0.00 4.79
266 267 3.267483 ACATAGTACCAAACATGACCGC 58.733 45.455 0.00 0.00 0.00 5.68
267 268 3.266636 CATAGTACCAAACATGACCGCA 58.733 45.455 0.00 0.00 0.00 5.69
268 269 1.519408 AGTACCAAACATGACCGCAC 58.481 50.000 0.00 0.00 0.00 5.34
269 270 0.165079 GTACCAAACATGACCGCACG 59.835 55.000 0.00 0.00 0.00 5.34
270 271 0.033642 TACCAAACATGACCGCACGA 59.966 50.000 0.00 0.00 0.00 4.35
271 272 1.206578 CCAAACATGACCGCACGAC 59.793 57.895 0.00 0.00 0.00 4.34
272 273 1.227999 CCAAACATGACCGCACGACT 61.228 55.000 0.00 0.00 0.00 4.18
273 274 0.163788 CAAACATGACCGCACGACTC 59.836 55.000 0.00 0.00 0.00 3.36
274 275 1.282248 AAACATGACCGCACGACTCG 61.282 55.000 0.00 0.00 0.00 4.18
280 281 3.103911 CCGCACGACTCGGTGAAC 61.104 66.667 2.98 0.00 41.85 3.18
281 282 2.050351 CGCACGACTCGGTGAACT 60.050 61.111 2.98 0.00 40.38 3.01
282 283 1.660575 CGCACGACTCGGTGAACTT 60.661 57.895 2.98 0.00 40.38 2.66
283 284 1.853319 GCACGACTCGGTGAACTTG 59.147 57.895 2.98 0.00 40.38 3.16
284 285 0.874607 GCACGACTCGGTGAACTTGT 60.875 55.000 2.98 0.00 40.38 3.16
285 286 1.567504 CACGACTCGGTGAACTTGTT 58.432 50.000 2.98 0.00 40.38 2.83
286 287 1.931172 CACGACTCGGTGAACTTGTTT 59.069 47.619 2.98 0.00 40.38 2.83
287 288 2.350498 CACGACTCGGTGAACTTGTTTT 59.650 45.455 2.98 0.00 40.38 2.43
288 289 3.552699 CACGACTCGGTGAACTTGTTTTA 59.447 43.478 2.98 0.00 40.38 1.52
289 290 3.800506 ACGACTCGGTGAACTTGTTTTAG 59.199 43.478 2.98 0.00 0.00 1.85
290 291 3.362693 CGACTCGGTGAACTTGTTTTAGC 60.363 47.826 0.00 0.00 0.00 3.09
291 292 2.542595 ACTCGGTGAACTTGTTTTAGCG 59.457 45.455 13.15 13.15 43.86 4.26
293 294 3.196463 TCGGTGAACTTGTTTTAGCGAA 58.804 40.909 16.95 7.10 46.80 4.70
294 295 3.622163 TCGGTGAACTTGTTTTAGCGAAA 59.378 39.130 16.95 0.00 46.80 3.46
295 296 3.722289 CGGTGAACTTGTTTTAGCGAAAC 59.278 43.478 13.72 10.60 44.93 2.78
296 297 7.676605 TCGGTGAACTTGTTTTAGCGAAACG 62.677 44.000 16.95 0.00 46.80 3.60
308 309 8.644264 GTTTTAGCGAAACGAACATAACATAA 57.356 30.769 0.00 0.00 38.38 1.90
309 310 9.105206 GTTTTAGCGAAACGAACATAACATAAA 57.895 29.630 0.00 0.00 38.38 1.40
310 311 9.661187 TTTTAGCGAAACGAACATAACATAAAA 57.339 25.926 0.00 0.00 0.00 1.52
311 312 8.644264 TTAGCGAAACGAACATAACATAAAAC 57.356 30.769 0.00 0.00 0.00 2.43
312 313 6.894828 AGCGAAACGAACATAACATAAAACT 58.105 32.000 0.00 0.00 0.00 2.66
313 314 8.020861 AGCGAAACGAACATAACATAAAACTA 57.979 30.769 0.00 0.00 0.00 2.24
314 315 8.662141 AGCGAAACGAACATAACATAAAACTAT 58.338 29.630 0.00 0.00 0.00 2.12
315 316 8.721476 GCGAAACGAACATAACATAAAACTATG 58.279 33.333 0.00 0.00 0.00 2.23
316 317 9.749490 CGAAACGAACATAACATAAAACTATGT 57.251 29.630 0.00 0.00 42.00 2.29
344 345 9.734620 ATCGAATGTAAATCAACAAATACATGG 57.265 29.630 0.00 0.00 38.58 3.66
345 346 8.951243 TCGAATGTAAATCAACAAATACATGGA 58.049 29.630 0.00 0.00 38.58 3.41
346 347 9.566530 CGAATGTAAATCAACAAATACATGGAA 57.433 29.630 0.00 0.00 38.58 3.53
364 365 5.843019 TGGAAGAAACTAATTCTCCCACT 57.157 39.130 0.00 0.00 44.46 4.00
365 366 6.200878 TGGAAGAAACTAATTCTCCCACTT 57.799 37.500 0.00 0.00 44.46 3.16
366 367 6.238648 TGGAAGAAACTAATTCTCCCACTTC 58.761 40.000 0.00 0.00 44.46 3.01
367 368 6.044404 TGGAAGAAACTAATTCTCCCACTTCT 59.956 38.462 0.00 0.00 44.46 2.85
368 369 7.421382 TGGAAGAAACTAATTCTCCCACTTCTT 60.421 37.037 0.00 0.00 44.46 2.52
370 371 7.079451 AGAAACTAATTCTCCCACTTCTTCA 57.921 36.000 0.00 0.00 45.42 3.02
371 372 7.518188 AGAAACTAATTCTCCCACTTCTTCAA 58.482 34.615 0.00 0.00 45.42 2.69
372 373 7.445707 AGAAACTAATTCTCCCACTTCTTCAAC 59.554 37.037 0.00 0.00 45.42 3.18
373 374 6.441088 ACTAATTCTCCCACTTCTTCAACT 57.559 37.500 0.00 0.00 0.00 3.16
374 375 6.468543 ACTAATTCTCCCACTTCTTCAACTC 58.531 40.000 0.00 0.00 0.00 3.01
375 376 3.386768 TTCTCCCACTTCTTCAACTCG 57.613 47.619 0.00 0.00 0.00 4.18
376 377 2.594131 TCTCCCACTTCTTCAACTCGA 58.406 47.619 0.00 0.00 0.00 4.04
377 378 2.963101 TCTCCCACTTCTTCAACTCGAA 59.037 45.455 0.00 0.00 0.00 3.71
378 379 3.060602 CTCCCACTTCTTCAACTCGAAC 58.939 50.000 0.00 0.00 0.00 3.95
379 380 2.698797 TCCCACTTCTTCAACTCGAACT 59.301 45.455 0.00 0.00 0.00 3.01
380 381 2.802816 CCCACTTCTTCAACTCGAACTG 59.197 50.000 0.00 0.00 0.00 3.16
381 382 3.492656 CCCACTTCTTCAACTCGAACTGA 60.493 47.826 0.00 0.00 0.00 3.41
393 394 4.267357 CTCGAACTGAGTGTAGTAGCTC 57.733 50.000 0.00 0.00 40.03 4.09
394 395 3.008330 TCGAACTGAGTGTAGTAGCTCC 58.992 50.000 0.00 0.00 0.00 4.70
395 396 3.011119 CGAACTGAGTGTAGTAGCTCCT 58.989 50.000 0.00 0.00 0.00 3.69
396 397 3.181505 CGAACTGAGTGTAGTAGCTCCTG 60.182 52.174 0.00 0.00 0.00 3.86
397 398 3.722908 ACTGAGTGTAGTAGCTCCTGA 57.277 47.619 0.00 0.00 0.00 3.86
398 399 4.243793 ACTGAGTGTAGTAGCTCCTGAT 57.756 45.455 0.00 0.00 0.00 2.90
399 400 4.204012 ACTGAGTGTAGTAGCTCCTGATC 58.796 47.826 0.00 0.00 0.00 2.92
400 401 4.080015 ACTGAGTGTAGTAGCTCCTGATCT 60.080 45.833 0.00 0.00 0.00 2.75
401 402 4.456535 TGAGTGTAGTAGCTCCTGATCTC 58.543 47.826 0.00 0.00 0.00 2.75
402 403 3.818773 GAGTGTAGTAGCTCCTGATCTCC 59.181 52.174 0.00 0.00 0.00 3.71
403 404 3.461831 AGTGTAGTAGCTCCTGATCTCCT 59.538 47.826 0.00 0.00 0.00 3.69
404 405 3.818773 GTGTAGTAGCTCCTGATCTCCTC 59.181 52.174 0.00 0.00 0.00 3.71
405 406 2.270352 AGTAGCTCCTGATCTCCTCG 57.730 55.000 0.00 0.00 0.00 4.63
406 407 1.771854 AGTAGCTCCTGATCTCCTCGA 59.228 52.381 0.00 0.00 0.00 4.04
407 408 2.375174 AGTAGCTCCTGATCTCCTCGAT 59.625 50.000 0.00 0.00 34.25 3.59
408 409 3.585289 AGTAGCTCCTGATCTCCTCGATA 59.415 47.826 0.00 0.00 30.84 2.92
409 410 3.071874 AGCTCCTGATCTCCTCGATAG 57.928 52.381 0.00 0.00 30.84 2.08
410 411 2.375174 AGCTCCTGATCTCCTCGATAGT 59.625 50.000 0.00 0.00 30.84 2.12
411 412 2.487762 GCTCCTGATCTCCTCGATAGTG 59.512 54.545 0.00 0.00 30.84 2.74
412 413 2.487762 CTCCTGATCTCCTCGATAGTGC 59.512 54.545 0.00 0.00 30.84 4.40
413 414 2.158608 TCCTGATCTCCTCGATAGTGCA 60.159 50.000 0.00 0.00 30.84 4.57
414 415 2.030363 CCTGATCTCCTCGATAGTGCAC 60.030 54.545 9.40 9.40 30.84 4.57
415 416 1.604278 TGATCTCCTCGATAGTGCACG 59.396 52.381 12.01 0.00 30.84 5.34
416 417 0.955178 ATCTCCTCGATAGTGCACGG 59.045 55.000 12.01 5.47 37.40 4.94
417 418 0.107361 TCTCCTCGATAGTGCACGGA 60.107 55.000 12.01 9.88 37.40 4.69
418 419 0.309302 CTCCTCGATAGTGCACGGAG 59.691 60.000 18.05 18.05 32.93 4.63
419 420 1.299468 CCTCGATAGTGCACGGAGC 60.299 63.158 12.01 5.55 45.96 4.70
428 429 4.492955 GCACGGAGCAGAGAAGAG 57.507 61.111 0.00 0.00 44.79 2.85
429 430 1.153667 GCACGGAGCAGAGAAGAGG 60.154 63.158 0.00 0.00 44.79 3.69
430 431 1.153667 CACGGAGCAGAGAAGAGGC 60.154 63.158 0.00 0.00 0.00 4.70
431 432 1.304879 ACGGAGCAGAGAAGAGGCT 60.305 57.895 0.00 0.00 41.35 4.58
434 435 2.188912 GAGCAGAGAAGAGGCTCGT 58.811 57.895 9.22 5.58 43.83 4.18
435 436 0.100503 GAGCAGAGAAGAGGCTCGTC 59.899 60.000 20.82 20.82 43.83 4.20
436 437 1.226547 GCAGAGAAGAGGCTCGTCG 60.227 63.158 21.83 11.16 39.87 5.12
437 438 1.928706 GCAGAGAAGAGGCTCGTCGT 61.929 60.000 21.83 12.47 39.87 4.34
438 439 0.098025 CAGAGAAGAGGCTCGTCGTC 59.902 60.000 21.83 18.58 39.87 4.20
439 440 1.061253 GAGAAGAGGCTCGTCGTCG 59.939 63.158 21.83 0.00 34.90 5.12
440 441 2.100603 GAAGAGGCTCGTCGTCGG 59.899 66.667 14.51 0.00 37.69 4.79
441 442 3.398353 GAAGAGGCTCGTCGTCGGG 62.398 68.421 14.51 0.00 40.98 5.14
442 443 3.914579 AAGAGGCTCGTCGTCGGGA 62.915 63.158 6.01 0.00 40.39 5.14
443 444 3.878519 GAGGCTCGTCGTCGGGAG 61.879 72.222 6.01 9.11 40.39 4.30
447 448 3.441290 CTCGTCGTCGGGAGGCTT 61.441 66.667 0.00 0.00 40.39 4.35
448 449 3.685214 CTCGTCGTCGGGAGGCTTG 62.685 68.421 0.00 0.00 40.39 4.01
449 450 4.796231 CGTCGTCGGGAGGCTTGG 62.796 72.222 0.00 0.00 0.00 3.61
450 451 4.452733 GTCGTCGGGAGGCTTGGG 62.453 72.222 0.00 0.00 0.00 4.12
469 470 4.711980 CGTAGCGGATCTGTGTCC 57.288 61.111 2.89 0.00 34.82 4.02
470 471 2.107705 CGTAGCGGATCTGTGTCCT 58.892 57.895 2.89 0.00 36.07 3.85
471 472 1.306148 CGTAGCGGATCTGTGTCCTA 58.694 55.000 2.89 0.00 36.07 2.94
472 473 1.880675 CGTAGCGGATCTGTGTCCTAT 59.119 52.381 2.89 0.00 36.07 2.57
473 474 2.350868 CGTAGCGGATCTGTGTCCTATG 60.351 54.545 2.89 0.00 36.07 2.23
474 475 1.781786 AGCGGATCTGTGTCCTATGT 58.218 50.000 2.89 0.00 36.07 2.29
475 476 2.945456 AGCGGATCTGTGTCCTATGTA 58.055 47.619 2.89 0.00 36.07 2.29
476 477 3.296854 AGCGGATCTGTGTCCTATGTAA 58.703 45.455 2.89 0.00 36.07 2.41
477 478 3.319405 AGCGGATCTGTGTCCTATGTAAG 59.681 47.826 2.89 0.00 36.07 2.34
478 479 3.643763 CGGATCTGTGTCCTATGTAAGC 58.356 50.000 0.00 0.00 36.07 3.09
479 480 3.553096 CGGATCTGTGTCCTATGTAAGCC 60.553 52.174 0.00 0.00 36.07 4.35
480 481 3.553096 GGATCTGTGTCCTATGTAAGCCG 60.553 52.174 0.00 0.00 35.32 5.52
481 482 1.136305 TCTGTGTCCTATGTAAGCCGC 59.864 52.381 0.00 0.00 0.00 6.53
482 483 0.177141 TGTGTCCTATGTAAGCCGCC 59.823 55.000 0.00 0.00 0.00 6.13
483 484 0.177141 GTGTCCTATGTAAGCCGCCA 59.823 55.000 0.00 0.00 0.00 5.69
484 485 0.177141 TGTCCTATGTAAGCCGCCAC 59.823 55.000 0.00 0.00 0.00 5.01
485 486 0.177141 GTCCTATGTAAGCCGCCACA 59.823 55.000 0.00 0.00 0.00 4.17
486 487 1.128200 TCCTATGTAAGCCGCCACAT 58.872 50.000 11.72 11.72 38.81 3.21
487 488 1.202639 TCCTATGTAAGCCGCCACATG 60.203 52.381 15.27 0.00 36.13 3.21
488 489 1.475034 CCTATGTAAGCCGCCACATGT 60.475 52.381 15.27 0.00 36.13 3.21
489 490 1.599071 CTATGTAAGCCGCCACATGTG 59.401 52.381 19.31 19.31 36.13 3.21
490 491 0.035534 ATGTAAGCCGCCACATGTGA 60.036 50.000 27.46 3.87 34.15 3.58
491 492 0.035534 TGTAAGCCGCCACATGTGAT 60.036 50.000 27.46 8.18 0.00 3.06
492 493 1.208293 TGTAAGCCGCCACATGTGATA 59.792 47.619 27.46 7.27 0.00 2.15
493 494 2.285083 GTAAGCCGCCACATGTGATAA 58.715 47.619 27.46 2.44 0.00 1.75
494 495 1.382522 AAGCCGCCACATGTGATAAG 58.617 50.000 27.46 11.28 0.00 1.73
495 496 0.541392 AGCCGCCACATGTGATAAGA 59.459 50.000 27.46 0.00 0.00 2.10
496 497 1.141657 AGCCGCCACATGTGATAAGAT 59.858 47.619 27.46 8.60 0.00 2.40
497 498 1.532868 GCCGCCACATGTGATAAGATC 59.467 52.381 27.46 5.64 0.00 2.75
498 499 2.837498 CCGCCACATGTGATAAGATCA 58.163 47.619 27.46 0.00 36.84 2.92
499 500 3.405831 CCGCCACATGTGATAAGATCAT 58.594 45.455 27.46 0.00 42.04 2.45
500 501 3.434641 CCGCCACATGTGATAAGATCATC 59.565 47.826 27.46 2.34 42.04 2.92
501 502 3.122445 CGCCACATGTGATAAGATCATCG 59.878 47.826 27.46 6.68 42.04 3.84
502 503 4.060900 GCCACATGTGATAAGATCATCGT 58.939 43.478 27.46 0.00 42.04 3.73
503 504 4.512944 GCCACATGTGATAAGATCATCGTT 59.487 41.667 27.46 0.00 42.04 3.85
504 505 5.559608 GCCACATGTGATAAGATCATCGTTG 60.560 44.000 27.46 5.39 42.04 4.10
505 506 5.525012 CCACATGTGATAAGATCATCGTTGT 59.475 40.000 27.46 0.00 42.04 3.32
506 507 6.701400 CCACATGTGATAAGATCATCGTTGTA 59.299 38.462 27.46 0.00 42.04 2.41
507 508 7.224557 CCACATGTGATAAGATCATCGTTGTAA 59.775 37.037 27.46 0.00 42.04 2.41
508 509 8.603181 CACATGTGATAAGATCATCGTTGTAAA 58.397 33.333 21.64 0.00 42.04 2.01
509 510 9.330063 ACATGTGATAAGATCATCGTTGTAAAT 57.670 29.630 0.00 0.00 42.04 1.40
510 511 9.803130 CATGTGATAAGATCATCGTTGTAAATC 57.197 33.333 0.00 0.00 42.04 2.17
511 512 8.365399 TGTGATAAGATCATCGTTGTAAATCC 57.635 34.615 0.00 0.00 42.04 3.01
512 513 7.441157 TGTGATAAGATCATCGTTGTAAATCCC 59.559 37.037 0.00 0.00 42.04 3.85
513 514 6.934645 TGATAAGATCATCGTTGTAAATCCCC 59.065 38.462 0.00 0.00 33.59 4.81
514 515 4.086706 AGATCATCGTTGTAAATCCCCC 57.913 45.455 0.00 0.00 0.00 5.40
515 516 2.319136 TCATCGTTGTAAATCCCCCG 57.681 50.000 0.00 0.00 0.00 5.73
516 517 1.555992 TCATCGTTGTAAATCCCCCGT 59.444 47.619 0.00 0.00 0.00 5.28
517 518 1.668751 CATCGTTGTAAATCCCCCGTG 59.331 52.381 0.00 0.00 0.00 4.94
518 519 0.686224 TCGTTGTAAATCCCCCGTGT 59.314 50.000 0.00 0.00 0.00 4.49
519 520 1.072015 TCGTTGTAAATCCCCCGTGTT 59.928 47.619 0.00 0.00 0.00 3.32
520 521 1.881324 CGTTGTAAATCCCCCGTGTTT 59.119 47.619 0.00 0.00 0.00 2.83
521 522 2.350964 CGTTGTAAATCCCCCGTGTTTG 60.351 50.000 0.00 0.00 0.00 2.93
522 523 2.624364 GTTGTAAATCCCCCGTGTTTGT 59.376 45.455 0.00 0.00 0.00 2.83
523 524 3.784511 TGTAAATCCCCCGTGTTTGTA 57.215 42.857 0.00 0.00 0.00 2.41
524 525 4.096190 TGTAAATCCCCCGTGTTTGTAA 57.904 40.909 0.00 0.00 0.00 2.41
525 526 3.819902 TGTAAATCCCCCGTGTTTGTAAC 59.180 43.478 0.00 0.00 0.00 2.50
526 527 1.913778 AATCCCCCGTGTTTGTAACC 58.086 50.000 0.00 0.00 0.00 2.85
527 528 1.069775 ATCCCCCGTGTTTGTAACCT 58.930 50.000 0.00 0.00 0.00 3.50
528 529 0.397564 TCCCCCGTGTTTGTAACCTC 59.602 55.000 0.00 0.00 0.00 3.85
529 530 0.399075 CCCCCGTGTTTGTAACCTCT 59.601 55.000 0.00 0.00 0.00 3.69
530 531 1.202842 CCCCCGTGTTTGTAACCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
531 532 2.148768 CCCCGTGTTTGTAACCTCTTC 58.851 52.381 0.00 0.00 0.00 2.87
532 533 2.148768 CCCGTGTTTGTAACCTCTTCC 58.851 52.381 0.00 0.00 0.00 3.46
533 534 1.796459 CCGTGTTTGTAACCTCTTCCG 59.204 52.381 0.00 0.00 0.00 4.30
534 535 2.546373 CCGTGTTTGTAACCTCTTCCGA 60.546 50.000 0.00 0.00 0.00 4.55
535 536 3.323243 CGTGTTTGTAACCTCTTCCGAT 58.677 45.455 0.00 0.00 0.00 4.18
536 537 4.487948 CGTGTTTGTAACCTCTTCCGATA 58.512 43.478 0.00 0.00 0.00 2.92
537 538 5.107133 CGTGTTTGTAACCTCTTCCGATAT 58.893 41.667 0.00 0.00 0.00 1.63
538 539 6.267817 CGTGTTTGTAACCTCTTCCGATATA 58.732 40.000 0.00 0.00 0.00 0.86
539 540 6.417044 CGTGTTTGTAACCTCTTCCGATATAG 59.583 42.308 0.00 0.00 0.00 1.31
540 541 7.263496 GTGTTTGTAACCTCTTCCGATATAGT 58.737 38.462 0.00 0.00 0.00 2.12
541 542 7.222224 GTGTTTGTAACCTCTTCCGATATAGTG 59.778 40.741 0.00 0.00 0.00 2.74
542 543 7.123098 TGTTTGTAACCTCTTCCGATATAGTGA 59.877 37.037 0.00 0.00 0.00 3.41
543 544 7.649533 TTGTAACCTCTTCCGATATAGTGAA 57.350 36.000 0.00 0.00 0.00 3.18
544 545 7.273320 TGTAACCTCTTCCGATATAGTGAAG 57.727 40.000 7.35 7.35 37.44 3.02
545 546 6.832384 TGTAACCTCTTCCGATATAGTGAAGT 59.168 38.462 11.15 0.59 37.39 3.01
546 547 6.793505 AACCTCTTCCGATATAGTGAAGTT 57.206 37.500 11.15 0.00 37.39 2.66
547 548 6.793505 ACCTCTTCCGATATAGTGAAGTTT 57.206 37.500 11.15 0.45 37.39 2.66
548 549 6.807789 ACCTCTTCCGATATAGTGAAGTTTC 58.192 40.000 11.15 0.00 37.39 2.78
549 550 5.915758 CCTCTTCCGATATAGTGAAGTTTCG 59.084 44.000 11.15 0.00 37.39 3.46
550 551 5.279384 TCTTCCGATATAGTGAAGTTTCGC 58.721 41.667 11.15 0.00 37.39 4.70
552 553 4.607955 TCCGATATAGTGAAGTTTCGCTG 58.392 43.478 16.07 1.60 46.60 5.18
553 554 3.736252 CCGATATAGTGAAGTTTCGCTGG 59.264 47.826 16.07 6.34 46.60 4.85
554 555 3.182572 CGATATAGTGAAGTTTCGCTGGC 59.817 47.826 16.07 4.25 46.60 4.85
555 556 2.770164 ATAGTGAAGTTTCGCTGGCT 57.230 45.000 16.07 1.09 46.60 4.75
556 557 3.887621 ATAGTGAAGTTTCGCTGGCTA 57.112 42.857 16.07 0.00 46.60 3.93
557 558 1.797025 AGTGAAGTTTCGCTGGCTAC 58.203 50.000 7.11 0.00 45.56 3.58
558 559 0.438830 GTGAAGTTTCGCTGGCTACG 59.561 55.000 0.00 0.00 34.94 3.51
559 560 1.289109 TGAAGTTTCGCTGGCTACGC 61.289 55.000 0.00 0.00 0.00 4.42
560 561 1.004918 AAGTTTCGCTGGCTACGCT 60.005 52.632 0.00 0.00 0.00 5.07
561 562 1.291877 AAGTTTCGCTGGCTACGCTG 61.292 55.000 0.00 0.00 0.00 5.18
562 563 2.027625 GTTTCGCTGGCTACGCTGT 61.028 57.895 0.00 0.00 0.00 4.40
563 564 1.301401 TTTCGCTGGCTACGCTGTT 60.301 52.632 0.00 0.00 0.00 3.16
564 565 1.565156 TTTCGCTGGCTACGCTGTTG 61.565 55.000 0.00 0.00 0.00 3.33
565 566 2.709125 TTCGCTGGCTACGCTGTTGT 62.709 55.000 0.00 0.00 0.00 3.32
566 567 2.317609 CGCTGGCTACGCTGTTGTT 61.318 57.895 0.00 0.00 0.00 2.83
595 596 5.423931 GGGTTAATTATCCTTTTGCCCTCAA 59.576 40.000 11.51 0.00 0.00 3.02
776 777 0.319986 TATTCAGACCGTTGCACGCA 60.320 50.000 0.00 0.00 40.91 5.24
874 932 1.179174 TGACCACGGTGACAGAGAGG 61.179 60.000 10.28 0.00 0.00 3.69
893 951 3.359523 CGGAGGTGACCACGACGA 61.360 66.667 12.44 0.00 0.00 4.20
894 952 2.257676 GGAGGTGACCACGACGAC 59.742 66.667 3.63 0.00 0.00 4.34
933 1022 0.984995 GGGAAGCTAGTTGTGGAGGT 59.015 55.000 0.00 0.00 0.00 3.85
953 1042 3.458163 CGGCGGTGGGAAGCTAGA 61.458 66.667 0.00 0.00 0.00 2.43
962 1051 0.107643 GGGAAGCTAGATGTGGAGGC 59.892 60.000 0.00 0.00 0.00 4.70
1438 1558 7.390718 GCTTAGGATGTTGAAGAAGAAGGTTAA 59.609 37.037 0.00 0.00 0.00 2.01
2250 2453 2.746362 GGACAGATGGCAAGACTTTGAG 59.254 50.000 0.00 0.00 36.36 3.02
2354 2557 1.644509 ATTTTGGAGGGTTGGAAGGC 58.355 50.000 0.00 0.00 0.00 4.35
2448 2651 8.034804 CACTTGGTTTAGGATTTAAAGGGAATG 58.965 37.037 0.00 0.00 0.00 2.67
2521 2727 1.004277 CTCACCCCCTCCGATTTTCAA 59.996 52.381 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.760945 AGCCTCCCACCTATCGGAAG 60.761 60.000 0.00 0.00 0.00 3.46
11 12 1.048724 CAGCCTCCCACCTATCGGAA 61.049 60.000 0.00 0.00 0.00 4.30
12 13 1.457643 CAGCCTCCCACCTATCGGA 60.458 63.158 0.00 0.00 0.00 4.55
13 14 1.762460 ACAGCCTCCCACCTATCGG 60.762 63.158 0.00 0.00 0.00 4.18
14 15 1.330655 ACACAGCCTCCCACCTATCG 61.331 60.000 0.00 0.00 0.00 2.92
15 16 0.466124 GACACAGCCTCCCACCTATC 59.534 60.000 0.00 0.00 0.00 2.08
16 17 0.252696 TGACACAGCCTCCCACCTAT 60.253 55.000 0.00 0.00 0.00 2.57
17 18 0.904865 CTGACACAGCCTCCCACCTA 60.905 60.000 0.00 0.00 0.00 3.08
18 19 2.122413 TGACACAGCCTCCCACCT 60.122 61.111 0.00 0.00 0.00 4.00
19 20 2.348998 CTGACACAGCCTCCCACC 59.651 66.667 0.00 0.00 0.00 4.61
20 21 1.302033 CACTGACACAGCCTCCCAC 60.302 63.158 0.00 0.00 34.37 4.61
21 22 1.053835 TTCACTGACACAGCCTCCCA 61.054 55.000 0.00 0.00 34.37 4.37
22 23 0.603975 GTTCACTGACACAGCCTCCC 60.604 60.000 0.00 0.00 34.37 4.30
23 24 0.106708 TGTTCACTGACACAGCCTCC 59.893 55.000 0.00 0.00 34.37 4.30
24 25 1.599542 GTTGTTCACTGACACAGCCTC 59.400 52.381 0.00 0.00 34.37 4.70
25 26 1.210478 AGTTGTTCACTGACACAGCCT 59.790 47.619 0.00 0.77 34.37 4.58
26 27 1.668419 AGTTGTTCACTGACACAGCC 58.332 50.000 0.00 0.00 34.37 4.85
27 28 2.218759 CGTAGTTGTTCACTGACACAGC 59.781 50.000 0.00 0.00 35.97 4.40
28 29 3.444916 ACGTAGTTGTTCACTGACACAG 58.555 45.455 0.00 0.00 37.78 3.66
29 30 3.513680 ACGTAGTTGTTCACTGACACA 57.486 42.857 0.00 0.00 37.78 3.72
30 31 4.205792 GTGTACGTAGTTGTTCACTGACAC 59.794 45.833 0.00 0.00 37.78 3.67
31 32 4.142425 TGTGTACGTAGTTGTTCACTGACA 60.142 41.667 11.54 0.00 37.78 3.58
32 33 4.353737 TGTGTACGTAGTTGTTCACTGAC 58.646 43.478 11.54 0.00 37.78 3.51
33 34 4.635833 TGTGTACGTAGTTGTTCACTGA 57.364 40.909 11.54 0.00 37.78 3.41
34 35 5.460748 TGAATGTGTACGTAGTTGTTCACTG 59.539 40.000 11.54 0.00 37.78 3.66
35 36 5.461078 GTGAATGTGTACGTAGTTGTTCACT 59.539 40.000 23.09 5.43 37.78 3.41
36 37 5.332808 GGTGAATGTGTACGTAGTTGTTCAC 60.333 44.000 22.68 22.68 37.78 3.18
37 38 4.746115 GGTGAATGTGTACGTAGTTGTTCA 59.254 41.667 0.00 2.56 37.78 3.18
38 39 4.986659 AGGTGAATGTGTACGTAGTTGTTC 59.013 41.667 0.00 0.00 37.78 3.18
39 40 4.952460 AGGTGAATGTGTACGTAGTTGTT 58.048 39.130 0.00 0.00 37.78 2.83
40 41 4.595762 AGGTGAATGTGTACGTAGTTGT 57.404 40.909 0.00 0.00 37.78 3.32
41 42 5.917541 AAAGGTGAATGTGTACGTAGTTG 57.082 39.130 0.00 0.00 37.78 3.16
42 43 6.985645 TGTTAAAGGTGAATGTGTACGTAGTT 59.014 34.615 0.00 0.00 37.78 2.24
44 45 6.643770 ACTGTTAAAGGTGAATGTGTACGTAG 59.356 38.462 0.00 0.00 0.00 3.51
45 46 6.514947 ACTGTTAAAGGTGAATGTGTACGTA 58.485 36.000 0.00 0.00 0.00 3.57
46 47 5.362263 ACTGTTAAAGGTGAATGTGTACGT 58.638 37.500 0.00 0.00 0.00 3.57
47 48 5.917541 ACTGTTAAAGGTGAATGTGTACG 57.082 39.130 0.00 0.00 0.00 3.67
48 49 8.656849 CATCTACTGTTAAAGGTGAATGTGTAC 58.343 37.037 0.00 0.00 0.00 2.90
49 50 8.372459 ACATCTACTGTTAAAGGTGAATGTGTA 58.628 33.333 0.00 0.00 32.90 2.90
50 51 7.224297 ACATCTACTGTTAAAGGTGAATGTGT 58.776 34.615 0.00 0.00 32.90 3.72
51 52 7.672983 ACATCTACTGTTAAAGGTGAATGTG 57.327 36.000 0.00 0.00 32.90 3.21
52 53 9.383519 CATACATCTACTGTTAAAGGTGAATGT 57.616 33.333 0.00 11.77 39.39 2.71
53 54 9.599866 TCATACATCTACTGTTAAAGGTGAATG 57.400 33.333 0.00 0.32 39.39 2.67
55 56 9.431887 GTTCATACATCTACTGTTAAAGGTGAA 57.568 33.333 0.00 0.00 39.39 3.18
56 57 8.812972 AGTTCATACATCTACTGTTAAAGGTGA 58.187 33.333 0.00 0.00 39.39 4.02
57 58 9.436957 AAGTTCATACATCTACTGTTAAAGGTG 57.563 33.333 0.00 0.00 39.39 4.00
76 77 9.150348 CCGCAAAAAGGAATAAATTAAGTTCAT 57.850 29.630 0.00 0.00 0.00 2.57
77 78 7.600752 CCCGCAAAAAGGAATAAATTAAGTTCA 59.399 33.333 0.00 0.00 0.00 3.18
78 79 7.601130 ACCCGCAAAAAGGAATAAATTAAGTTC 59.399 33.333 0.00 0.00 0.00 3.01
79 80 7.386573 CACCCGCAAAAAGGAATAAATTAAGTT 59.613 33.333 0.00 0.00 0.00 2.66
80 81 6.871492 CACCCGCAAAAAGGAATAAATTAAGT 59.129 34.615 0.00 0.00 0.00 2.24
81 82 7.093992 TCACCCGCAAAAAGGAATAAATTAAG 58.906 34.615 0.00 0.00 0.00 1.85
82 83 6.994221 TCACCCGCAAAAAGGAATAAATTAA 58.006 32.000 0.00 0.00 0.00 1.40
83 84 6.591750 TCACCCGCAAAAAGGAATAAATTA 57.408 33.333 0.00 0.00 0.00 1.40
84 85 5.476091 TCACCCGCAAAAAGGAATAAATT 57.524 34.783 0.00 0.00 0.00 1.82
85 86 5.221541 TGTTCACCCGCAAAAAGGAATAAAT 60.222 36.000 0.00 0.00 0.00 1.40
86 87 4.099573 TGTTCACCCGCAAAAAGGAATAAA 59.900 37.500 0.00 0.00 0.00 1.40
87 88 3.637229 TGTTCACCCGCAAAAAGGAATAA 59.363 39.130 0.00 0.00 0.00 1.40
88 89 3.223435 TGTTCACCCGCAAAAAGGAATA 58.777 40.909 0.00 0.00 0.00 1.75
89 90 2.035632 TGTTCACCCGCAAAAAGGAAT 58.964 42.857 0.00 0.00 0.00 3.01
90 91 1.475403 TGTTCACCCGCAAAAAGGAA 58.525 45.000 0.00 0.00 0.00 3.36
91 92 1.339610 CATGTTCACCCGCAAAAAGGA 59.660 47.619 0.00 0.00 0.00 3.36
92 93 1.339610 TCATGTTCACCCGCAAAAAGG 59.660 47.619 0.00 0.00 0.00 3.11
93 94 2.791383 TCATGTTCACCCGCAAAAAG 57.209 45.000 0.00 0.00 0.00 2.27
94 95 2.428890 AGTTCATGTTCACCCGCAAAAA 59.571 40.909 0.00 0.00 0.00 1.94
95 96 2.028130 AGTTCATGTTCACCCGCAAAA 58.972 42.857 0.00 0.00 0.00 2.44
96 97 1.686355 AGTTCATGTTCACCCGCAAA 58.314 45.000 0.00 0.00 0.00 3.68
97 98 1.686355 AAGTTCATGTTCACCCGCAA 58.314 45.000 0.00 0.00 0.00 4.85
98 99 2.552599 TAAGTTCATGTTCACCCGCA 57.447 45.000 0.00 0.00 0.00 5.69
99 100 4.434713 AATTAAGTTCATGTTCACCCGC 57.565 40.909 0.00 0.00 0.00 6.13
100 101 6.442952 TCAAAATTAAGTTCATGTTCACCCG 58.557 36.000 0.00 0.00 0.00 5.28
101 102 7.708752 TGTTCAAAATTAAGTTCATGTTCACCC 59.291 33.333 0.00 0.00 0.00 4.61
102 103 8.539674 GTGTTCAAAATTAAGTTCATGTTCACC 58.460 33.333 0.00 0.00 0.00 4.02
103 104 9.081997 TGTGTTCAAAATTAAGTTCATGTTCAC 57.918 29.630 0.00 1.15 0.00 3.18
104 105 9.645059 TTGTGTTCAAAATTAAGTTCATGTTCA 57.355 25.926 0.00 0.00 0.00 3.18
107 108 9.598517 ACATTGTGTTCAAAATTAAGTTCATGT 57.401 25.926 0.00 0.00 37.11 3.21
108 109 9.852481 CACATTGTGTTCAAAATTAAGTTCATG 57.148 29.630 8.69 0.00 37.11 3.07
109 110 9.814899 TCACATTGTGTTCAAAATTAAGTTCAT 57.185 25.926 16.06 0.00 37.11 2.57
110 111 9.645059 TTCACATTGTGTTCAAAATTAAGTTCA 57.355 25.926 16.06 0.00 37.11 3.18
120 121 9.462174 GTCTGAATATTTCACATTGTGTTCAAA 57.538 29.630 16.06 10.04 34.99 2.69
121 122 8.628280 TGTCTGAATATTTCACATTGTGTTCAA 58.372 29.630 16.06 8.56 35.46 2.69
122 123 8.075574 GTGTCTGAATATTTCACATTGTGTTCA 58.924 33.333 16.06 15.47 35.46 3.18
123 124 8.075574 TGTGTCTGAATATTTCACATTGTGTTC 58.924 33.333 16.06 12.11 34.74 3.18
124 125 7.939782 TGTGTCTGAATATTTCACATTGTGTT 58.060 30.769 16.06 3.19 34.74 3.32
125 126 7.509141 TGTGTCTGAATATTTCACATTGTGT 57.491 32.000 16.06 0.38 34.74 3.72
126 127 7.861872 TGTTGTGTCTGAATATTTCACATTGTG 59.138 33.333 10.64 10.64 38.50 3.33
127 128 7.939782 TGTTGTGTCTGAATATTTCACATTGT 58.060 30.769 13.31 0.00 38.50 2.71
128 129 8.975410 ATGTTGTGTCTGAATATTTCACATTG 57.025 30.769 13.31 0.00 38.50 2.82
130 131 8.400947 GCTATGTTGTGTCTGAATATTTCACAT 58.599 33.333 13.31 0.00 38.50 3.21
131 132 7.390162 TGCTATGTTGTGTCTGAATATTTCACA 59.610 33.333 10.42 10.42 37.27 3.58
132 133 7.751732 TGCTATGTTGTGTCTGAATATTTCAC 58.248 34.615 0.00 0.00 35.46 3.18
133 134 7.920160 TGCTATGTTGTGTCTGAATATTTCA 57.080 32.000 0.00 0.00 38.17 2.69
137 138 9.618890 AGTTTATGCTATGTTGTGTCTGAATAT 57.381 29.630 0.00 0.00 0.00 1.28
138 139 9.098355 GAGTTTATGCTATGTTGTGTCTGAATA 57.902 33.333 0.00 0.00 0.00 1.75
139 140 7.826252 AGAGTTTATGCTATGTTGTGTCTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
140 141 7.161404 AGAGTTTATGCTATGTTGTGTCTGAA 58.839 34.615 0.00 0.00 0.00 3.02
141 142 6.701340 AGAGTTTATGCTATGTTGTGTCTGA 58.299 36.000 0.00 0.00 0.00 3.27
142 143 6.974932 AGAGTTTATGCTATGTTGTGTCTG 57.025 37.500 0.00 0.00 0.00 3.51
143 144 9.672673 ATTTAGAGTTTATGCTATGTTGTGTCT 57.327 29.630 0.00 0.00 0.00 3.41
148 149 9.849607 CGTGTATTTAGAGTTTATGCTATGTTG 57.150 33.333 0.00 0.00 0.00 3.33
149 150 9.595823 ACGTGTATTTAGAGTTTATGCTATGTT 57.404 29.630 0.00 0.00 0.00 2.71
150 151 9.031360 CACGTGTATTTAGAGTTTATGCTATGT 57.969 33.333 7.58 0.00 0.00 2.29
151 152 9.244799 TCACGTGTATTTAGAGTTTATGCTATG 57.755 33.333 16.51 0.00 0.00 2.23
152 153 9.811995 TTCACGTGTATTTAGAGTTTATGCTAT 57.188 29.630 16.51 0.00 0.00 2.97
153 154 9.079833 GTTCACGTGTATTTAGAGTTTATGCTA 57.920 33.333 16.51 0.00 0.00 3.49
154 155 7.601130 TGTTCACGTGTATTTAGAGTTTATGCT 59.399 33.333 16.51 0.00 0.00 3.79
155 156 7.686938 GTGTTCACGTGTATTTAGAGTTTATGC 59.313 37.037 16.51 0.00 0.00 3.14
156 157 8.705134 TGTGTTCACGTGTATTTAGAGTTTATG 58.295 33.333 16.51 0.00 0.00 1.90
157 158 8.821147 TGTGTTCACGTGTATTTAGAGTTTAT 57.179 30.769 16.51 0.00 0.00 1.40
158 159 8.542132 GTTGTGTTCACGTGTATTTAGAGTTTA 58.458 33.333 16.51 0.00 0.00 2.01
159 160 7.064847 TGTTGTGTTCACGTGTATTTAGAGTTT 59.935 33.333 16.51 0.00 0.00 2.66
160 161 6.535865 TGTTGTGTTCACGTGTATTTAGAGTT 59.464 34.615 16.51 0.00 0.00 3.01
161 162 6.044046 TGTTGTGTTCACGTGTATTTAGAGT 58.956 36.000 16.51 0.00 0.00 3.24
162 163 6.519353 TGTTGTGTTCACGTGTATTTAGAG 57.481 37.500 16.51 0.00 0.00 2.43
163 164 7.148705 GCTATGTTGTGTTCACGTGTATTTAGA 60.149 37.037 16.51 0.00 0.00 2.10
164 165 6.953743 GCTATGTTGTGTTCACGTGTATTTAG 59.046 38.462 16.51 6.92 0.00 1.85
165 166 6.424207 TGCTATGTTGTGTTCACGTGTATTTA 59.576 34.615 16.51 0.00 0.00 1.40
166 167 5.237561 TGCTATGTTGTGTTCACGTGTATTT 59.762 36.000 16.51 0.00 0.00 1.40
167 168 4.752604 TGCTATGTTGTGTTCACGTGTATT 59.247 37.500 16.51 0.00 0.00 1.89
168 169 4.311606 TGCTATGTTGTGTTCACGTGTAT 58.688 39.130 16.51 1.80 0.00 2.29
169 170 3.718815 TGCTATGTTGTGTTCACGTGTA 58.281 40.909 16.51 2.27 0.00 2.90
170 171 2.556257 TGCTATGTTGTGTTCACGTGT 58.444 42.857 16.51 0.00 0.00 4.49
171 172 3.186205 TCATGCTATGTTGTGTTCACGTG 59.814 43.478 9.94 9.94 0.00 4.49
172 173 3.398406 TCATGCTATGTTGTGTTCACGT 58.602 40.909 0.00 0.00 0.00 4.49
173 174 4.083855 AGTTCATGCTATGTTGTGTTCACG 60.084 41.667 0.00 0.00 0.00 4.35
174 175 5.362556 AGTTCATGCTATGTTGTGTTCAC 57.637 39.130 0.00 0.00 0.00 3.18
175 176 4.455533 GGAGTTCATGCTATGTTGTGTTCA 59.544 41.667 0.00 0.00 0.00 3.18
176 177 4.455533 TGGAGTTCATGCTATGTTGTGTTC 59.544 41.667 0.00 0.00 0.00 3.18
177 178 4.397420 TGGAGTTCATGCTATGTTGTGTT 58.603 39.130 0.00 0.00 0.00 3.32
178 179 4.019792 TGGAGTTCATGCTATGTTGTGT 57.980 40.909 0.00 0.00 0.00 3.72
179 180 5.156355 GTTTGGAGTTCATGCTATGTTGTG 58.844 41.667 0.00 0.00 0.00 3.33
180 181 4.826733 TGTTTGGAGTTCATGCTATGTTGT 59.173 37.500 0.00 0.00 0.00 3.32
181 182 5.156355 GTGTTTGGAGTTCATGCTATGTTG 58.844 41.667 0.00 0.00 0.00 3.33
182 183 4.826733 TGTGTTTGGAGTTCATGCTATGTT 59.173 37.500 0.00 0.00 0.00 2.71
183 184 4.216257 GTGTGTTTGGAGTTCATGCTATGT 59.784 41.667 0.00 0.00 0.00 2.29
184 185 4.669965 CGTGTGTTTGGAGTTCATGCTATG 60.670 45.833 0.00 0.00 0.00 2.23
185 186 3.436704 CGTGTGTTTGGAGTTCATGCTAT 59.563 43.478 0.00 0.00 0.00 2.97
186 187 2.805671 CGTGTGTTTGGAGTTCATGCTA 59.194 45.455 0.00 0.00 0.00 3.49
187 188 1.603802 CGTGTGTTTGGAGTTCATGCT 59.396 47.619 0.00 0.00 0.00 3.79
188 189 1.333619 ACGTGTGTTTGGAGTTCATGC 59.666 47.619 0.00 0.00 0.00 4.06
189 190 2.611751 TCACGTGTGTTTGGAGTTCATG 59.388 45.455 16.51 0.00 0.00 3.07
190 191 2.912771 TCACGTGTGTTTGGAGTTCAT 58.087 42.857 16.51 0.00 0.00 2.57
191 192 2.388310 TCACGTGTGTTTGGAGTTCA 57.612 45.000 16.51 0.00 0.00 3.18
192 193 2.417239 TGTTCACGTGTGTTTGGAGTTC 59.583 45.455 16.51 0.00 0.00 3.01
193 194 2.160813 GTGTTCACGTGTGTTTGGAGTT 59.839 45.455 16.51 0.00 0.00 3.01
194 195 1.735571 GTGTTCACGTGTGTTTGGAGT 59.264 47.619 16.51 0.00 0.00 3.85
195 196 1.735018 TGTGTTCACGTGTGTTTGGAG 59.265 47.619 16.51 0.00 0.00 3.86
196 197 1.809684 TGTGTTCACGTGTGTTTGGA 58.190 45.000 16.51 0.00 0.00 3.53
197 198 2.246789 GTTGTGTTCACGTGTGTTTGG 58.753 47.619 16.51 0.00 0.00 3.28
198 199 2.922384 TGTTGTGTTCACGTGTGTTTG 58.078 42.857 16.51 0.00 0.00 2.93
199 200 3.840890 ATGTTGTGTTCACGTGTGTTT 57.159 38.095 16.51 0.00 0.00 2.83
200 201 3.242608 GCTATGTTGTGTTCACGTGTGTT 60.243 43.478 16.51 0.00 0.00 3.32
201 202 2.286833 GCTATGTTGTGTTCACGTGTGT 59.713 45.455 16.51 0.00 0.00 3.72
202 203 2.286563 TGCTATGTTGTGTTCACGTGTG 59.713 45.455 16.51 0.00 0.00 3.82
203 204 2.556257 TGCTATGTTGTGTTCACGTGT 58.444 42.857 16.51 0.00 0.00 4.49
204 205 3.811722 ATGCTATGTTGTGTTCACGTG 57.188 42.857 9.94 9.94 0.00 4.49
205 206 5.468746 AGTTTATGCTATGTTGTGTTCACGT 59.531 36.000 0.00 0.00 0.00 4.49
206 207 5.927030 AGTTTATGCTATGTTGTGTTCACG 58.073 37.500 0.00 0.00 0.00 4.35
207 208 6.072728 TGGAGTTTATGCTATGTTGTGTTCAC 60.073 38.462 0.00 0.00 0.00 3.18
208 209 6.000840 TGGAGTTTATGCTATGTTGTGTTCA 58.999 36.000 0.00 0.00 0.00 3.18
209 210 6.494893 TGGAGTTTATGCTATGTTGTGTTC 57.505 37.500 0.00 0.00 0.00 3.18
210 211 6.892658 TTGGAGTTTATGCTATGTTGTGTT 57.107 33.333 0.00 0.00 0.00 3.32
211 212 6.264292 TGTTTGGAGTTTATGCTATGTTGTGT 59.736 34.615 0.00 0.00 0.00 3.72
212 213 6.582295 GTGTTTGGAGTTTATGCTATGTTGTG 59.418 38.462 0.00 0.00 0.00 3.33
213 214 6.264292 TGTGTTTGGAGTTTATGCTATGTTGT 59.736 34.615 0.00 0.00 0.00 3.32
214 215 6.582295 GTGTGTTTGGAGTTTATGCTATGTTG 59.418 38.462 0.00 0.00 0.00 3.33
215 216 6.490040 AGTGTGTTTGGAGTTTATGCTATGTT 59.510 34.615 0.00 0.00 0.00 2.71
216 217 6.003950 AGTGTGTTTGGAGTTTATGCTATGT 58.996 36.000 0.00 0.00 0.00 2.29
217 218 6.500684 AGTGTGTTTGGAGTTTATGCTATG 57.499 37.500 0.00 0.00 0.00 2.23
218 219 7.230510 TGAAAGTGTGTTTGGAGTTTATGCTAT 59.769 33.333 0.00 0.00 0.00 2.97
219 220 6.544197 TGAAAGTGTGTTTGGAGTTTATGCTA 59.456 34.615 0.00 0.00 0.00 3.49
220 221 5.359576 TGAAAGTGTGTTTGGAGTTTATGCT 59.640 36.000 0.00 0.00 0.00 3.79
221 222 5.587289 TGAAAGTGTGTTTGGAGTTTATGC 58.413 37.500 0.00 0.00 0.00 3.14
222 223 7.032580 TGTTGAAAGTGTGTTTGGAGTTTATG 58.967 34.615 0.00 0.00 0.00 1.90
223 224 7.164230 TGTTGAAAGTGTGTTTGGAGTTTAT 57.836 32.000 0.00 0.00 0.00 1.40
224 225 6.576662 TGTTGAAAGTGTGTTTGGAGTTTA 57.423 33.333 0.00 0.00 0.00 2.01
225 226 5.461032 TGTTGAAAGTGTGTTTGGAGTTT 57.539 34.783 0.00 0.00 0.00 2.66
226 227 5.659440 ATGTTGAAAGTGTGTTTGGAGTT 57.341 34.783 0.00 0.00 0.00 3.01
227 228 5.885912 ACTATGTTGAAAGTGTGTTTGGAGT 59.114 36.000 0.00 0.00 0.00 3.85
228 229 6.377327 ACTATGTTGAAAGTGTGTTTGGAG 57.623 37.500 0.00 0.00 0.00 3.86
229 230 6.261381 GGTACTATGTTGAAAGTGTGTTTGGA 59.739 38.462 0.00 0.00 0.00 3.53
230 231 6.038825 TGGTACTATGTTGAAAGTGTGTTTGG 59.961 38.462 0.00 0.00 0.00 3.28
231 232 7.022055 TGGTACTATGTTGAAAGTGTGTTTG 57.978 36.000 0.00 0.00 0.00 2.93
232 233 7.633193 TTGGTACTATGTTGAAAGTGTGTTT 57.367 32.000 0.00 0.00 0.00 2.83
233 234 7.121463 TGTTTGGTACTATGTTGAAAGTGTGTT 59.879 33.333 0.00 0.00 0.00 3.32
234 235 6.600032 TGTTTGGTACTATGTTGAAAGTGTGT 59.400 34.615 0.00 0.00 0.00 3.72
235 236 7.022055 TGTTTGGTACTATGTTGAAAGTGTG 57.978 36.000 0.00 0.00 0.00 3.82
236 237 7.500892 TCATGTTTGGTACTATGTTGAAAGTGT 59.499 33.333 0.00 0.00 0.00 3.55
237 238 7.803189 GTCATGTTTGGTACTATGTTGAAAGTG 59.197 37.037 0.00 0.00 0.00 3.16
238 239 7.040686 GGTCATGTTTGGTACTATGTTGAAAGT 60.041 37.037 0.00 0.00 0.00 2.66
239 240 7.305474 GGTCATGTTTGGTACTATGTTGAAAG 58.695 38.462 0.00 0.00 0.00 2.62
240 241 6.072948 CGGTCATGTTTGGTACTATGTTGAAA 60.073 38.462 0.00 0.00 0.00 2.69
241 242 5.410132 CGGTCATGTTTGGTACTATGTTGAA 59.590 40.000 0.00 0.00 0.00 2.69
242 243 4.932799 CGGTCATGTTTGGTACTATGTTGA 59.067 41.667 0.00 0.00 0.00 3.18
243 244 4.436852 GCGGTCATGTTTGGTACTATGTTG 60.437 45.833 0.00 0.00 0.00 3.33
244 245 3.687698 GCGGTCATGTTTGGTACTATGTT 59.312 43.478 0.00 0.00 0.00 2.71
245 246 3.267483 GCGGTCATGTTTGGTACTATGT 58.733 45.455 0.00 0.00 0.00 2.29
246 247 3.063452 GTGCGGTCATGTTTGGTACTATG 59.937 47.826 0.00 0.00 0.00 2.23
247 248 3.267483 GTGCGGTCATGTTTGGTACTAT 58.733 45.455 0.00 0.00 0.00 2.12
248 249 2.690786 GTGCGGTCATGTTTGGTACTA 58.309 47.619 0.00 0.00 0.00 1.82
249 250 1.519408 GTGCGGTCATGTTTGGTACT 58.481 50.000 0.00 0.00 0.00 2.73
250 251 0.165079 CGTGCGGTCATGTTTGGTAC 59.835 55.000 0.00 0.00 0.00 3.34
251 252 0.033642 TCGTGCGGTCATGTTTGGTA 59.966 50.000 0.00 0.00 0.00 3.25
252 253 1.227704 TCGTGCGGTCATGTTTGGT 60.228 52.632 0.00 0.00 0.00 3.67
253 254 1.206578 GTCGTGCGGTCATGTTTGG 59.793 57.895 0.00 0.00 0.00 3.28
254 255 0.163788 GAGTCGTGCGGTCATGTTTG 59.836 55.000 0.00 0.00 0.00 2.93
255 256 1.282248 CGAGTCGTGCGGTCATGTTT 61.282 55.000 3.82 0.00 0.00 2.83
256 257 1.733041 CGAGTCGTGCGGTCATGTT 60.733 57.895 3.82 0.00 0.00 2.71
257 258 2.126463 CGAGTCGTGCGGTCATGT 60.126 61.111 3.82 0.00 0.00 3.21
258 259 2.880879 CCGAGTCGTGCGGTCATG 60.881 66.667 12.31 0.00 43.66 3.07
264 265 1.660575 AAGTTCACCGAGTCGTGCG 60.661 57.895 12.31 0.00 33.57 5.34
265 266 0.874607 ACAAGTTCACCGAGTCGTGC 60.875 55.000 12.31 0.00 33.57 5.34
266 267 1.567504 AACAAGTTCACCGAGTCGTG 58.432 50.000 12.31 9.96 34.93 4.35
267 268 2.304751 AAACAAGTTCACCGAGTCGT 57.695 45.000 12.31 0.00 0.00 4.34
268 269 3.362693 GCTAAAACAAGTTCACCGAGTCG 60.363 47.826 5.29 5.29 0.00 4.18
269 270 3.362693 CGCTAAAACAAGTTCACCGAGTC 60.363 47.826 0.00 0.00 0.00 3.36
270 271 2.542595 CGCTAAAACAAGTTCACCGAGT 59.457 45.455 0.00 0.00 0.00 4.18
271 272 2.798283 TCGCTAAAACAAGTTCACCGAG 59.202 45.455 0.00 0.00 0.00 4.63
272 273 2.823984 TCGCTAAAACAAGTTCACCGA 58.176 42.857 0.00 0.00 0.00 4.69
273 274 3.595709 TTCGCTAAAACAAGTTCACCG 57.404 42.857 0.00 0.00 0.00 4.94
274 275 3.722289 CGTTTCGCTAAAACAAGTTCACC 59.278 43.478 10.86 0.00 46.33 4.02
275 276 4.580528 TCGTTTCGCTAAAACAAGTTCAC 58.419 39.130 10.86 0.00 46.33 3.18
276 277 4.861389 TCGTTTCGCTAAAACAAGTTCA 57.139 36.364 10.86 0.00 46.33 3.18
277 278 5.023286 TGTTCGTTTCGCTAAAACAAGTTC 58.977 37.500 10.86 0.37 46.33 3.01
278 279 4.972201 TGTTCGTTTCGCTAAAACAAGTT 58.028 34.783 10.86 0.00 46.33 2.66
279 280 4.603231 TGTTCGTTTCGCTAAAACAAGT 57.397 36.364 10.86 0.00 46.33 3.16
280 281 6.629649 TGTTATGTTCGTTTCGCTAAAACAAG 59.370 34.615 10.86 0.00 46.33 3.16
281 282 6.484540 TGTTATGTTCGTTTCGCTAAAACAA 58.515 32.000 10.86 3.70 46.33 2.83
282 283 6.045698 TGTTATGTTCGTTTCGCTAAAACA 57.954 33.333 10.86 1.85 46.33 2.83
283 284 8.644264 TTATGTTATGTTCGTTTCGCTAAAAC 57.356 30.769 2.42 2.42 43.22 2.43
284 285 9.661187 TTTTATGTTATGTTCGTTTCGCTAAAA 57.339 25.926 0.00 0.00 0.00 1.52
285 286 9.105206 GTTTTATGTTATGTTCGTTTCGCTAAA 57.895 29.630 0.00 0.00 0.00 1.85
286 287 8.497554 AGTTTTATGTTATGTTCGTTTCGCTAA 58.502 29.630 0.00 0.00 0.00 3.09
287 288 8.020861 AGTTTTATGTTATGTTCGTTTCGCTA 57.979 30.769 0.00 0.00 0.00 4.26
288 289 6.894828 AGTTTTATGTTATGTTCGTTTCGCT 58.105 32.000 0.00 0.00 0.00 4.93
289 290 8.721476 CATAGTTTTATGTTATGTTCGTTTCGC 58.279 33.333 0.00 0.00 33.45 4.70
290 291 9.749490 ACATAGTTTTATGTTATGTTCGTTTCG 57.251 29.630 0.00 0.00 45.92 3.46
318 319 9.734620 CCATGTATTTGTTGATTTACATTCGAT 57.265 29.630 0.00 0.00 34.03 3.59
319 320 8.951243 TCCATGTATTTGTTGATTTACATTCGA 58.049 29.630 0.00 0.00 34.03 3.71
320 321 9.566530 TTCCATGTATTTGTTGATTTACATTCG 57.433 29.630 0.00 0.00 34.03 3.34
344 345 7.661847 TGAAGAAGTGGGAGAATTAGTTTCTTC 59.338 37.037 13.72 13.72 44.88 2.87
345 346 7.518188 TGAAGAAGTGGGAGAATTAGTTTCTT 58.482 34.615 0.00 0.00 44.88 2.52
347 348 7.445707 AGTTGAAGAAGTGGGAGAATTAGTTTC 59.554 37.037 0.00 0.00 34.31 2.78
348 349 7.290813 AGTTGAAGAAGTGGGAGAATTAGTTT 58.709 34.615 0.00 0.00 0.00 2.66
349 350 6.842676 AGTTGAAGAAGTGGGAGAATTAGTT 58.157 36.000 0.00 0.00 0.00 2.24
350 351 6.441088 AGTTGAAGAAGTGGGAGAATTAGT 57.559 37.500 0.00 0.00 0.00 2.24
351 352 5.578727 CGAGTTGAAGAAGTGGGAGAATTAG 59.421 44.000 0.00 0.00 0.00 1.73
352 353 5.245301 TCGAGTTGAAGAAGTGGGAGAATTA 59.755 40.000 0.00 0.00 0.00 1.40
353 354 4.040461 TCGAGTTGAAGAAGTGGGAGAATT 59.960 41.667 0.00 0.00 0.00 2.17
354 355 3.578716 TCGAGTTGAAGAAGTGGGAGAAT 59.421 43.478 0.00 0.00 0.00 2.40
355 356 2.963101 TCGAGTTGAAGAAGTGGGAGAA 59.037 45.455 0.00 0.00 0.00 2.87
356 357 2.594131 TCGAGTTGAAGAAGTGGGAGA 58.406 47.619 0.00 0.00 0.00 3.71
357 358 3.060602 GTTCGAGTTGAAGAAGTGGGAG 58.939 50.000 0.00 0.00 37.23 4.30
358 359 2.698797 AGTTCGAGTTGAAGAAGTGGGA 59.301 45.455 0.00 0.00 37.23 4.37
359 360 2.802816 CAGTTCGAGTTGAAGAAGTGGG 59.197 50.000 0.00 0.00 41.57 4.61
360 361 3.717707 TCAGTTCGAGTTGAAGAAGTGG 58.282 45.455 11.56 0.00 43.96 4.00
361 362 4.963237 CTCAGTTCGAGTTGAAGAAGTG 57.037 45.455 6.67 6.67 44.71 3.16
373 374 3.008330 GGAGCTACTACACTCAGTTCGA 58.992 50.000 0.00 0.00 34.48 3.71
374 375 3.011119 AGGAGCTACTACACTCAGTTCG 58.989 50.000 0.00 0.00 34.48 3.95
375 376 4.011023 TCAGGAGCTACTACACTCAGTTC 58.989 47.826 0.00 0.00 34.48 3.01
376 377 4.035612 TCAGGAGCTACTACACTCAGTT 57.964 45.455 0.00 0.00 34.48 3.16
377 378 3.722908 TCAGGAGCTACTACACTCAGT 57.277 47.619 0.00 0.00 34.48 3.41
378 379 4.460263 AGATCAGGAGCTACTACACTCAG 58.540 47.826 0.00 0.00 34.48 3.35
379 380 4.456535 GAGATCAGGAGCTACTACACTCA 58.543 47.826 15.88 0.00 34.48 3.41
380 381 3.818773 GGAGATCAGGAGCTACTACACTC 59.181 52.174 0.00 7.49 0.00 3.51
381 382 3.461831 AGGAGATCAGGAGCTACTACACT 59.538 47.826 0.00 0.00 35.99 3.55
382 383 3.818773 GAGGAGATCAGGAGCTACTACAC 59.181 52.174 0.00 0.00 38.30 2.90
383 384 3.495276 CGAGGAGATCAGGAGCTACTACA 60.495 52.174 0.00 0.00 38.30 2.74
384 385 3.071479 CGAGGAGATCAGGAGCTACTAC 58.929 54.545 0.00 0.00 38.30 2.73
385 386 2.973406 TCGAGGAGATCAGGAGCTACTA 59.027 50.000 0.00 0.00 38.30 1.82
386 387 1.771854 TCGAGGAGATCAGGAGCTACT 59.228 52.381 0.00 0.00 41.46 2.57
387 388 2.264005 TCGAGGAGATCAGGAGCTAC 57.736 55.000 0.00 0.00 0.00 3.58
388 389 3.585289 ACTATCGAGGAGATCAGGAGCTA 59.415 47.826 4.23 0.00 40.66 3.32
389 390 2.375174 ACTATCGAGGAGATCAGGAGCT 59.625 50.000 4.23 0.00 40.66 4.09
390 391 2.487762 CACTATCGAGGAGATCAGGAGC 59.512 54.545 4.23 0.00 40.66 4.70
391 392 2.487762 GCACTATCGAGGAGATCAGGAG 59.512 54.545 4.23 0.00 40.66 3.69
392 393 2.158608 TGCACTATCGAGGAGATCAGGA 60.159 50.000 4.23 0.00 40.66 3.86
393 394 2.030363 GTGCACTATCGAGGAGATCAGG 60.030 54.545 10.32 0.00 40.66 3.86
394 395 2.350293 CGTGCACTATCGAGGAGATCAG 60.350 54.545 16.19 0.00 40.66 2.90
395 396 1.604278 CGTGCACTATCGAGGAGATCA 59.396 52.381 16.19 0.00 40.66 2.92
396 397 1.068885 CCGTGCACTATCGAGGAGATC 60.069 57.143 16.19 0.00 40.66 2.75
397 398 0.955178 CCGTGCACTATCGAGGAGAT 59.045 55.000 16.19 0.00 43.19 2.75
398 399 0.107361 TCCGTGCACTATCGAGGAGA 60.107 55.000 16.19 0.00 0.00 3.71
399 400 0.309302 CTCCGTGCACTATCGAGGAG 59.691 60.000 18.05 18.05 39.18 3.69
400 401 1.725557 GCTCCGTGCACTATCGAGGA 61.726 60.000 16.19 11.74 42.31 3.71
401 402 1.299468 GCTCCGTGCACTATCGAGG 60.299 63.158 16.19 7.60 42.31 4.63
402 403 4.310672 GCTCCGTGCACTATCGAG 57.689 61.111 16.19 14.18 42.31 4.04
411 412 1.153667 CCTCTTCTCTGCTCCGTGC 60.154 63.158 0.00 0.00 43.25 5.34
412 413 1.153667 GCCTCTTCTCTGCTCCGTG 60.154 63.158 0.00 0.00 0.00 4.94
413 414 1.304879 AGCCTCTTCTCTGCTCCGT 60.305 57.895 0.00 0.00 0.00 4.69
414 415 1.437160 GAGCCTCTTCTCTGCTCCG 59.563 63.158 0.00 0.00 44.45 4.63
415 416 1.319614 ACGAGCCTCTTCTCTGCTCC 61.320 60.000 5.26 0.00 46.82 4.70
416 417 0.100503 GACGAGCCTCTTCTCTGCTC 59.899 60.000 0.00 0.00 46.21 4.26
417 418 1.653094 CGACGAGCCTCTTCTCTGCT 61.653 60.000 0.00 0.00 38.24 4.24
418 419 1.226547 CGACGAGCCTCTTCTCTGC 60.227 63.158 0.00 0.00 0.00 4.26
419 420 0.098025 GACGACGAGCCTCTTCTCTG 59.902 60.000 0.00 0.00 0.00 3.35
420 421 1.363145 CGACGACGAGCCTCTTCTCT 61.363 60.000 0.00 0.00 42.66 3.10
421 422 1.061253 CGACGACGAGCCTCTTCTC 59.939 63.158 0.00 0.00 42.66 2.87
422 423 2.400158 CCGACGACGAGCCTCTTCT 61.400 63.158 9.28 0.00 42.66 2.85
423 424 2.100603 CCGACGACGAGCCTCTTC 59.899 66.667 9.28 0.00 42.66 2.87
424 425 3.441290 CCCGACGACGAGCCTCTT 61.441 66.667 9.28 0.00 42.66 2.85
425 426 4.405671 TCCCGACGACGAGCCTCT 62.406 66.667 9.28 0.00 42.66 3.69
426 427 3.878519 CTCCCGACGACGAGCCTC 61.879 72.222 9.28 0.00 42.66 4.70
430 431 3.441290 AAGCCTCCCGACGACGAG 61.441 66.667 9.28 0.00 42.66 4.18
431 432 3.744719 CAAGCCTCCCGACGACGA 61.745 66.667 9.28 0.00 42.66 4.20
432 433 4.796231 CCAAGCCTCCCGACGACG 62.796 72.222 0.00 0.00 39.43 5.12
433 434 4.452733 CCCAAGCCTCCCGACGAC 62.453 72.222 0.00 0.00 0.00 4.34
452 453 1.306148 TAGGACACAGATCCGCTACG 58.694 55.000 0.00 0.00 44.22 3.51
453 454 2.623889 ACATAGGACACAGATCCGCTAC 59.376 50.000 0.00 0.00 44.22 3.58
454 455 2.945456 ACATAGGACACAGATCCGCTA 58.055 47.619 0.00 0.00 44.22 4.26
455 456 1.781786 ACATAGGACACAGATCCGCT 58.218 50.000 0.00 0.00 44.22 5.52
456 457 3.643763 CTTACATAGGACACAGATCCGC 58.356 50.000 0.00 0.00 44.22 5.54
457 458 3.553096 GGCTTACATAGGACACAGATCCG 60.553 52.174 0.00 0.00 44.22 4.18
458 459 3.553096 CGGCTTACATAGGACACAGATCC 60.553 52.174 0.00 0.00 39.28 3.36
459 460 3.643763 CGGCTTACATAGGACACAGATC 58.356 50.000 0.00 0.00 0.00 2.75
460 461 2.224066 GCGGCTTACATAGGACACAGAT 60.224 50.000 0.00 0.00 0.00 2.90
461 462 1.136305 GCGGCTTACATAGGACACAGA 59.864 52.381 0.00 0.00 0.00 3.41
462 463 1.571919 GCGGCTTACATAGGACACAG 58.428 55.000 0.00 0.00 0.00 3.66
463 464 0.177141 GGCGGCTTACATAGGACACA 59.823 55.000 0.00 0.00 0.00 3.72
464 465 0.177141 TGGCGGCTTACATAGGACAC 59.823 55.000 11.43 0.00 0.00 3.67
465 466 0.177141 GTGGCGGCTTACATAGGACA 59.823 55.000 11.43 0.00 0.00 4.02
466 467 0.177141 TGTGGCGGCTTACATAGGAC 59.823 55.000 11.43 0.00 0.00 3.85
467 468 1.128200 ATGTGGCGGCTTACATAGGA 58.872 50.000 17.40 0.00 35.86 2.94
468 469 1.229428 CATGTGGCGGCTTACATAGG 58.771 55.000 18.10 7.89 35.86 2.57
469 470 1.599071 CACATGTGGCGGCTTACATAG 59.401 52.381 18.51 15.22 35.86 2.23
470 471 1.208293 TCACATGTGGCGGCTTACATA 59.792 47.619 25.16 0.00 35.86 2.29
471 472 0.035534 TCACATGTGGCGGCTTACAT 60.036 50.000 25.16 9.95 37.99 2.29
472 473 0.035534 ATCACATGTGGCGGCTTACA 60.036 50.000 25.16 7.67 0.00 2.41
473 474 1.948104 TATCACATGTGGCGGCTTAC 58.052 50.000 25.16 0.69 0.00 2.34
474 475 2.169561 TCTTATCACATGTGGCGGCTTA 59.830 45.455 25.16 4.76 0.00 3.09
475 476 1.065491 TCTTATCACATGTGGCGGCTT 60.065 47.619 25.16 6.75 0.00 4.35
476 477 0.541392 TCTTATCACATGTGGCGGCT 59.459 50.000 25.16 8.22 0.00 5.52
477 478 1.532868 GATCTTATCACATGTGGCGGC 59.467 52.381 25.16 0.00 0.00 6.53
478 479 2.837498 TGATCTTATCACATGTGGCGG 58.163 47.619 25.16 12.98 33.59 6.13
479 480 3.122445 CGATGATCTTATCACATGTGGCG 59.878 47.826 25.16 11.28 43.01 5.69
480 481 4.060900 ACGATGATCTTATCACATGTGGC 58.939 43.478 25.16 7.33 43.01 5.01
481 482 5.525012 ACAACGATGATCTTATCACATGTGG 59.475 40.000 25.16 9.61 43.01 4.17
482 483 6.594284 ACAACGATGATCTTATCACATGTG 57.406 37.500 20.18 20.18 43.01 3.21
483 484 8.716646 TTTACAACGATGATCTTATCACATGT 57.283 30.769 0.00 0.00 43.01 3.21
484 485 9.803130 GATTTACAACGATGATCTTATCACATG 57.197 33.333 0.00 0.00 43.01 3.21
485 486 8.993121 GGATTTACAACGATGATCTTATCACAT 58.007 33.333 0.00 0.00 43.01 3.21
486 487 7.441157 GGGATTTACAACGATGATCTTATCACA 59.559 37.037 0.00 0.00 43.01 3.58
487 488 7.095187 GGGGATTTACAACGATGATCTTATCAC 60.095 40.741 0.00 0.00 43.01 3.06
488 489 6.934645 GGGGATTTACAACGATGATCTTATCA 59.065 38.462 0.00 0.00 44.55 2.15
489 490 6.371825 GGGGGATTTACAACGATGATCTTATC 59.628 42.308 0.00 0.00 0.00 1.75
490 491 6.238648 GGGGGATTTACAACGATGATCTTAT 58.761 40.000 0.00 0.00 0.00 1.73
491 492 5.617252 GGGGGATTTACAACGATGATCTTA 58.383 41.667 0.00 0.00 0.00 2.10
492 493 4.461198 GGGGGATTTACAACGATGATCTT 58.539 43.478 0.00 0.00 0.00 2.40
493 494 3.494398 CGGGGGATTTACAACGATGATCT 60.494 47.826 0.00 0.00 0.00 2.75
494 495 2.806244 CGGGGGATTTACAACGATGATC 59.194 50.000 0.00 0.00 0.00 2.92
495 496 2.171870 ACGGGGGATTTACAACGATGAT 59.828 45.455 0.00 0.00 0.00 2.45
496 497 1.555992 ACGGGGGATTTACAACGATGA 59.444 47.619 0.00 0.00 0.00 2.92
497 498 1.668751 CACGGGGGATTTACAACGATG 59.331 52.381 0.00 0.00 0.00 3.84
498 499 1.279846 ACACGGGGGATTTACAACGAT 59.720 47.619 0.00 0.00 0.00 3.73
499 500 0.686224 ACACGGGGGATTTACAACGA 59.314 50.000 0.00 0.00 0.00 3.85
500 501 1.525941 AACACGGGGGATTTACAACG 58.474 50.000 0.00 0.00 0.00 4.10
501 502 2.624364 ACAAACACGGGGGATTTACAAC 59.376 45.455 0.00 0.00 0.00 3.32
502 503 2.946785 ACAAACACGGGGGATTTACAA 58.053 42.857 0.00 0.00 0.00 2.41
503 504 2.660670 ACAAACACGGGGGATTTACA 57.339 45.000 0.00 0.00 0.00 2.41
504 505 3.191162 GGTTACAAACACGGGGGATTTAC 59.809 47.826 0.00 0.00 0.00 2.01
505 506 3.074242 AGGTTACAAACACGGGGGATTTA 59.926 43.478 0.00 0.00 0.00 1.40
506 507 2.158430 AGGTTACAAACACGGGGGATTT 60.158 45.455 0.00 0.00 0.00 2.17
507 508 1.426215 AGGTTACAAACACGGGGGATT 59.574 47.619 0.00 0.00 0.00 3.01
508 509 1.003928 GAGGTTACAAACACGGGGGAT 59.996 52.381 0.00 0.00 0.00 3.85
509 510 0.397564 GAGGTTACAAACACGGGGGA 59.602 55.000 0.00 0.00 0.00 4.81
510 511 0.399075 AGAGGTTACAAACACGGGGG 59.601 55.000 0.00 0.00 0.00 5.40
511 512 2.148768 GAAGAGGTTACAAACACGGGG 58.851 52.381 0.00 0.00 0.00 5.73
512 513 2.148768 GGAAGAGGTTACAAACACGGG 58.851 52.381 0.00 0.00 0.00 5.28
513 514 1.796459 CGGAAGAGGTTACAAACACGG 59.204 52.381 0.00 0.00 0.00 4.94
514 515 2.746269 TCGGAAGAGGTTACAAACACG 58.254 47.619 0.00 0.00 34.84 4.49
528 529 5.174035 CAGCGAAACTTCACTATATCGGAAG 59.826 44.000 0.00 0.00 42.79 3.46
529 530 5.041287 CAGCGAAACTTCACTATATCGGAA 58.959 41.667 0.00 0.00 0.00 4.30
530 531 4.499188 CCAGCGAAACTTCACTATATCGGA 60.499 45.833 0.00 0.00 0.00 4.55
531 532 3.736252 CCAGCGAAACTTCACTATATCGG 59.264 47.826 0.00 0.00 0.00 4.18
532 533 3.182572 GCCAGCGAAACTTCACTATATCG 59.817 47.826 0.00 0.00 0.00 2.92
533 534 4.372656 AGCCAGCGAAACTTCACTATATC 58.627 43.478 0.00 0.00 0.00 1.63
534 535 4.408182 AGCCAGCGAAACTTCACTATAT 57.592 40.909 0.00 0.00 0.00 0.86
535 536 3.887621 AGCCAGCGAAACTTCACTATA 57.112 42.857 0.00 0.00 0.00 1.31
536 537 2.770164 AGCCAGCGAAACTTCACTAT 57.230 45.000 0.00 0.00 0.00 2.12
537 538 2.670229 CGTAGCCAGCGAAACTTCACTA 60.670 50.000 0.00 0.00 0.00 2.74
538 539 1.797025 GTAGCCAGCGAAACTTCACT 58.203 50.000 0.00 0.00 0.00 3.41
539 540 0.438830 CGTAGCCAGCGAAACTTCAC 59.561 55.000 0.00 0.00 0.00 3.18
540 541 2.822306 CGTAGCCAGCGAAACTTCA 58.178 52.632 0.00 0.00 0.00 3.02
554 555 4.823790 AACCCTAAAAACAACAGCGTAG 57.176 40.909 0.00 0.00 0.00 3.51
555 556 6.880942 ATTAACCCTAAAAACAACAGCGTA 57.119 33.333 0.00 0.00 0.00 4.42
556 557 5.777850 ATTAACCCTAAAAACAACAGCGT 57.222 34.783 0.00 0.00 0.00 5.07
557 558 7.486870 GGATAATTAACCCTAAAAACAACAGCG 59.513 37.037 0.24 0.00 0.00 5.18
558 559 8.528643 AGGATAATTAACCCTAAAAACAACAGC 58.471 33.333 8.09 0.00 0.00 4.40
563 564 9.713713 GCAAAAGGATAATTAACCCTAAAAACA 57.286 29.630 8.09 0.00 0.00 2.83
564 565 9.158233 GGCAAAAGGATAATTAACCCTAAAAAC 57.842 33.333 8.09 0.51 0.00 2.43
565 566 8.322828 GGGCAAAAGGATAATTAACCCTAAAAA 58.677 33.333 8.09 0.00 31.84 1.94
566 567 7.680739 AGGGCAAAAGGATAATTAACCCTAAAA 59.319 33.333 8.09 0.00 43.36 1.52
595 596 4.640771 AAACTGAGTACATGGACACCAT 57.359 40.909 11.55 0.00 46.37 3.55
776 777 2.765969 CTGGGTCCCACAAGCCAT 59.234 61.111 6.47 0.00 45.28 4.40
864 918 0.609406 CACCTCCGTCCTCTCTGTCA 60.609 60.000 0.00 0.00 0.00 3.58
874 932 2.257676 GTCGTGGTCACCTCCGTC 59.742 66.667 0.00 0.00 0.00 4.79
893 951 2.695759 CGCCGTGCTCTCTCTCTGT 61.696 63.158 0.00 0.00 0.00 3.41
894 952 2.101965 CGCCGTGCTCTCTCTCTG 59.898 66.667 0.00 0.00 0.00 3.35
1279 1399 5.410746 TCTTCTTGCAGTTCATTCATCAGAC 59.589 40.000 0.00 0.00 0.00 3.51
1438 1558 2.305343 AGTGCCTGATCTTCAAGCTTCT 59.695 45.455 0.00 0.00 35.00 2.85
1454 1574 2.100749 GCAAATGGGTATTGGTAGTGCC 59.899 50.000 0.00 0.00 37.90 5.01
1717 1851 1.696336 ACAGAAAGGCAGAGCAGAGAA 59.304 47.619 0.00 0.00 0.00 2.87
1752 1889 1.895131 GCTCTGAATTTGGCCCAAGAA 59.105 47.619 0.00 0.00 0.00 2.52
1784 1922 0.250510 GCCCATTAGTCTAGCCTGCC 60.251 60.000 0.00 0.00 0.00 4.85
1977 2165 7.364200 TCACGGTGTATTTGAATTGGTTTAAG 58.636 34.615 8.17 0.00 0.00 1.85
1982 2181 5.975693 AATCACGGTGTATTTGAATTGGT 57.024 34.783 8.17 0.00 0.00 3.67
2121 2322 7.524717 TTTTCCACCCTTCATTTCTTTAGAG 57.475 36.000 0.00 0.00 0.00 2.43
2128 2330 3.996363 GTGCATTTTCCACCCTTCATTTC 59.004 43.478 0.00 0.00 0.00 2.17
2250 2453 1.894699 ACCTTCCTTCCCTACCCATC 58.105 55.000 0.00 0.00 0.00 3.51
2354 2557 3.421888 GCAGTGCAAACATACGTTTTCAG 59.578 43.478 11.09 0.00 42.82 3.02
2448 2651 7.596248 ACAAGTCATGAACTAACATGCAAATTC 59.404 33.333 0.00 0.00 44.79 2.17
2492 2698 2.245438 GAGGGGGTGAGAAGCCTTCG 62.245 65.000 0.00 0.00 34.02 3.79
2495 2701 2.285743 GGAGGGGGTGAGAAGCCT 60.286 66.667 0.00 0.00 0.00 4.58
2521 2727 7.360361 GTTCGAGAACTTGTGGTTTTCATTAT 58.640 34.615 8.58 0.00 38.48 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.