Multiple sequence alignment - TraesCS7D01G045100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G045100 chr7D 100.000 5051 0 0 1 5051 22783446 22778396 0.000000e+00 9328.0
1 TraesCS7D01G045100 chr7A 91.844 2305 89 27 831 3085 23332340 23330085 0.000000e+00 3123.0
2 TraesCS7D01G045100 chr7A 93.522 1096 56 8 3658 4744 23329342 23328253 0.000000e+00 1616.0
3 TraesCS7D01G045100 chr7A 95.455 572 20 3 3089 3655 23330019 23329449 0.000000e+00 907.0
4 TraesCS7D01G045100 chr7A 92.857 210 15 0 4842 5051 23328218 23328009 6.350000e-79 305.0
5 TraesCS7D01G045100 chr7A 90.476 147 13 1 575 720 23333092 23332946 5.160000e-45 193.0
6 TraesCS7D01G045100 chr4A 91.331 1615 107 14 3464 5051 707038825 707040433 0.000000e+00 2176.0
7 TraesCS7D01G045100 chr4A 91.948 621 24 7 827 1433 707036515 707037123 0.000000e+00 846.0
8 TraesCS7D01G045100 chr4A 84.125 863 108 19 2198 3047 707037675 707038521 0.000000e+00 808.0
9 TraesCS7D01G045100 chr4A 93.000 300 19 2 3089 3386 707038524 707038823 2.160000e-118 436.0
10 TraesCS7D01G045100 chr4A 80.682 440 53 19 1476 1912 707037125 707037535 3.800000e-81 313.0
11 TraesCS7D01G045100 chr6D 85.808 761 89 12 3423 4169 446720315 446719560 0.000000e+00 789.0
12 TraesCS7D01G045100 chr6D 90.566 212 10 7 1184 1391 2958088 2957883 6.440000e-69 272.0
13 TraesCS7D01G045100 chr6A 96.250 160 6 0 1232 1391 1985432 1985591 3.880000e-66 263.0
14 TraesCS7D01G045100 chr2A 88.479 217 17 5 1179 1391 689201748 689201960 6.490000e-64 255.0
15 TraesCS7D01G045100 chr4D 78.194 454 58 15 71 493 231197149 231197592 8.390000e-63 252.0
16 TraesCS7D01G045100 chr2D 88.018 217 18 5 1179 1391 545853409 545853197 3.020000e-62 250.0
17 TraesCS7D01G045100 chr2B 87.558 217 19 5 1179 1391 652412166 652411954 1.400000e-60 244.0
18 TraesCS7D01G045100 chr6B 87.330 221 15 6 1184 1391 6168692 6168472 1.820000e-59 241.0
19 TraesCS7D01G045100 chr3A 87.383 214 21 5 1184 1391 707465772 707465559 1.820000e-59 241.0
20 TraesCS7D01G045100 chr1B 100.000 30 0 0 30 59 401605533 401605562 7.060000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G045100 chr7D 22778396 22783446 5050 True 9328.0 9328 100.0000 1 5051 1 chr7D.!!$R1 5050
1 TraesCS7D01G045100 chr7A 23328009 23333092 5083 True 1228.8 3123 92.8308 575 5051 5 chr7A.!!$R1 4476
2 TraesCS7D01G045100 chr4A 707036515 707040433 3918 False 915.8 2176 88.2172 827 5051 5 chr4A.!!$F1 4224
3 TraesCS7D01G045100 chr6D 446719560 446720315 755 True 789.0 789 85.8080 3423 4169 1 chr6D.!!$R2 746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 476 0.179004 AAAAGGCATGTCGTGACCCA 60.179 50.0 0.0 0.0 36.01 4.51 F
938 1436 0.250727 AAACCCATCACCCTCACACG 60.251 55.0 0.0 0.0 0.00 4.49 F
2120 2647 0.108138 CTGGGTCCGAACTAGCCTTG 60.108 60.0 0.0 0.0 35.48 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1457 1975 0.036952 ACCCTGTCTCACAGCAATCG 60.037 55.0 0.00 0.0 44.63 3.34 R
2379 2922 0.591170 AACAGGCGGAAAATGTGACG 59.409 50.0 0.00 0.0 0.00 4.35 R
4058 4796 0.385751 TGATCTTCGATCGAGCACCC 59.614 55.0 18.54 8.5 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.621832 TTCAGCGAGTTAATTTTGTTCATTG 57.378 32.000 0.00 0.00 0.00 2.82
25 26 6.148948 TCAGCGAGTTAATTTTGTTCATTGG 58.851 36.000 0.00 0.00 0.00 3.16
26 27 6.016693 TCAGCGAGTTAATTTTGTTCATTGGA 60.017 34.615 0.00 0.00 0.00 3.53
27 28 6.808212 CAGCGAGTTAATTTTGTTCATTGGAT 59.192 34.615 0.00 0.00 0.00 3.41
28 29 7.329226 CAGCGAGTTAATTTTGTTCATTGGATT 59.671 33.333 0.00 0.00 0.00 3.01
29 30 8.519526 AGCGAGTTAATTTTGTTCATTGGATTA 58.480 29.630 0.00 0.00 0.00 1.75
30 31 9.134734 GCGAGTTAATTTTGTTCATTGGATTAA 57.865 29.630 0.00 0.00 0.00 1.40
96 97 9.473640 TTCATCAAATTCACAAAAATTCATCGA 57.526 25.926 0.00 0.00 0.00 3.59
97 98 9.473640 TCATCAAATTCACAAAAATTCATCGAA 57.526 25.926 0.00 0.00 0.00 3.71
111 112 9.810231 AAAATTCATCGAATTAAACAAATGTGC 57.190 25.926 2.56 0.00 40.77 4.57
112 113 8.531622 AATTCATCGAATTAAACAAATGTGCA 57.468 26.923 0.16 0.00 40.00 4.57
113 114 8.706492 ATTCATCGAATTAAACAAATGTGCAT 57.294 26.923 0.00 0.00 0.00 3.96
114 115 7.739022 TCATCGAATTAAACAAATGTGCATC 57.261 32.000 0.00 0.00 0.00 3.91
115 116 7.311408 TCATCGAATTAAACAAATGTGCATCA 58.689 30.769 0.00 0.00 0.00 3.07
116 117 7.811713 TCATCGAATTAAACAAATGTGCATCAA 59.188 29.630 0.00 0.00 0.00 2.57
117 118 7.936950 TCGAATTAAACAAATGTGCATCAAA 57.063 28.000 0.00 0.00 0.00 2.69
118 119 8.531622 TCGAATTAAACAAATGTGCATCAAAT 57.468 26.923 0.00 0.00 0.00 2.32
119 120 9.631452 TCGAATTAAACAAATGTGCATCAAATA 57.369 25.926 0.00 0.00 0.00 1.40
120 121 9.674208 CGAATTAAACAAATGTGCATCAAATAC 57.326 29.630 0.00 0.00 0.00 1.89
128 129 9.666626 ACAAATGTGCATCAAATACAAAATTTG 57.333 25.926 3.89 3.89 39.61 2.32
131 132 9.881529 AATGTGCATCAAATACAAAATTTGTTC 57.118 25.926 16.99 0.00 42.22 3.18
132 133 8.429493 TGTGCATCAAATACAAAATTTGTTCA 57.571 26.923 16.99 0.00 42.22 3.18
133 134 9.053840 TGTGCATCAAATACAAAATTTGTTCAT 57.946 25.926 16.99 2.50 42.22 2.57
134 135 9.532697 GTGCATCAAATACAAAATTTGTTCATC 57.467 29.630 16.99 0.43 42.22 2.92
135 136 8.433893 TGCATCAAATACAAAATTTGTTCATCG 58.566 29.630 16.99 3.15 42.22 3.84
136 137 8.646356 GCATCAAATACAAAATTTGTTCATCGA 58.354 29.630 16.99 8.11 42.22 3.59
175 176 9.212641 TCATCAAATTCAAAACTTGTTTGTTCA 57.787 25.926 0.00 0.00 31.99 3.18
176 177 9.991388 CATCAAATTCAAAACTTGTTTGTTCAT 57.009 25.926 0.00 0.00 31.99 2.57
243 244 8.661352 AAAAATGTTCATCGGATTCAAAGTTT 57.339 26.923 0.00 0.00 0.00 2.66
244 245 7.642071 AAATGTTCATCGGATTCAAAGTTTG 57.358 32.000 9.44 9.44 0.00 2.93
245 246 5.766150 TGTTCATCGGATTCAAAGTTTGT 57.234 34.783 15.08 0.00 0.00 2.83
246 247 6.142818 TGTTCATCGGATTCAAAGTTTGTT 57.857 33.333 15.08 4.69 0.00 2.83
247 248 6.205784 TGTTCATCGGATTCAAAGTTTGTTC 58.794 36.000 15.08 12.58 0.00 3.18
248 249 6.183360 TGTTCATCGGATTCAAAGTTTGTTCA 60.183 34.615 15.08 1.92 0.00 3.18
249 250 6.573664 TCATCGGATTCAAAGTTTGTTCAT 57.426 33.333 15.08 6.47 0.00 2.57
250 251 6.611381 TCATCGGATTCAAAGTTTGTTCATC 58.389 36.000 15.08 13.69 0.00 2.92
251 252 6.206438 TCATCGGATTCAAAGTTTGTTCATCA 59.794 34.615 15.08 2.76 0.00 3.07
252 253 6.384258 TCGGATTCAAAGTTTGTTCATCAA 57.616 33.333 15.08 1.88 0.00 2.57
253 254 6.800543 TCGGATTCAAAGTTTGTTCATCAAA 58.199 32.000 15.08 1.19 42.79 2.69
254 255 7.432869 TCGGATTCAAAGTTTGTTCATCAAAT 58.567 30.769 15.08 5.91 45.88 2.32
255 256 8.572185 TCGGATTCAAAGTTTGTTCATCAAATA 58.428 29.630 15.08 0.00 45.88 1.40
256 257 8.638565 CGGATTCAAAGTTTGTTCATCAAATAC 58.361 33.333 15.08 5.92 45.88 1.89
257 258 8.638565 GGATTCAAAGTTTGTTCATCAAATACG 58.361 33.333 15.08 0.00 45.88 3.06
258 259 9.393249 GATTCAAAGTTTGTTCATCAAATACGA 57.607 29.630 15.08 0.00 45.88 3.43
259 260 9.743057 ATTCAAAGTTTGTTCATCAAATACGAA 57.257 25.926 15.08 0.00 45.88 3.85
260 261 9.574458 TTCAAAGTTTGTTCATCAAATACGAAA 57.426 25.926 15.08 0.00 45.88 3.46
261 262 9.743057 TCAAAGTTTGTTCATCAAATACGAAAT 57.257 25.926 15.08 0.00 45.88 2.17
289 290 9.878667 ATGTTCATCATTATTGAAAAATGCTCA 57.121 25.926 0.00 0.00 35.03 4.26
290 291 9.878667 TGTTCATCATTATTGAAAAATGCTCAT 57.121 25.926 0.00 0.00 35.03 2.90
357 358 9.919348 AAAAATGTTCATTCTTTTGAAATCACG 57.081 25.926 0.00 0.00 42.31 4.35
358 359 8.870160 AAATGTTCATTCTTTTGAAATCACGA 57.130 26.923 0.00 0.00 42.31 4.35
359 360 8.870160 AATGTTCATTCTTTTGAAATCACGAA 57.130 26.923 0.00 0.00 42.31 3.85
360 361 7.678194 TGTTCATTCTTTTGAAATCACGAAC 57.322 32.000 0.00 0.00 42.31 3.95
361 362 7.254137 TGTTCATTCTTTTGAAATCACGAACA 58.746 30.769 0.00 0.00 42.31 3.18
362 363 7.920151 TGTTCATTCTTTTGAAATCACGAACAT 59.080 29.630 0.00 0.00 42.31 2.71
363 364 8.755018 GTTCATTCTTTTGAAATCACGAACATT 58.245 29.630 0.00 0.00 42.31 2.71
364 365 8.870160 TCATTCTTTTGAAATCACGAACATTT 57.130 26.923 0.00 0.00 42.31 2.32
365 366 9.311916 TCATTCTTTTGAAATCACGAACATTTT 57.688 25.926 0.00 0.00 42.31 1.82
366 367 9.919348 CATTCTTTTGAAATCACGAACATTTTT 57.081 25.926 0.00 0.00 42.31 1.94
396 397 9.113876 GTTCAAGAACTGTTTATAAATTCGGTG 57.886 33.333 0.31 5.99 38.25 4.94
397 398 8.610248 TCAAGAACTGTTTATAAATTCGGTGA 57.390 30.769 0.31 7.86 0.00 4.02
398 399 9.058174 TCAAGAACTGTTTATAAATTCGGTGAA 57.942 29.630 0.31 0.00 0.00 3.18
399 400 9.113876 CAAGAACTGTTTATAAATTCGGTGAAC 57.886 33.333 0.31 0.00 0.00 3.18
400 401 8.385898 AGAACTGTTTATAAATTCGGTGAACA 57.614 30.769 0.31 0.00 0.00 3.18
401 402 9.010029 AGAACTGTTTATAAATTCGGTGAACAT 57.990 29.630 0.31 0.00 0.00 2.71
402 403 9.274065 GAACTGTTTATAAATTCGGTGAACATC 57.726 33.333 0.31 0.00 0.00 3.06
403 404 7.758495 ACTGTTTATAAATTCGGTGAACATCC 58.242 34.615 0.31 0.00 0.00 3.51
404 405 7.610305 ACTGTTTATAAATTCGGTGAACATCCT 59.390 33.333 0.31 0.00 0.00 3.24
405 406 8.343168 TGTTTATAAATTCGGTGAACATCCTT 57.657 30.769 0.31 0.00 0.00 3.36
406 407 8.798402 TGTTTATAAATTCGGTGAACATCCTTT 58.202 29.630 0.31 0.00 0.00 3.11
407 408 9.634163 GTTTATAAATTCGGTGAACATCCTTTT 57.366 29.630 0.31 0.00 0.00 2.27
408 409 9.632807 TTTATAAATTCGGTGAACATCCTTTTG 57.367 29.630 0.00 0.00 0.00 2.44
409 410 5.782893 AAATTCGGTGAACATCCTTTTGA 57.217 34.783 0.00 0.00 0.00 2.69
410 411 5.782893 AATTCGGTGAACATCCTTTTGAA 57.217 34.783 0.00 0.00 0.00 2.69
411 412 5.982890 ATTCGGTGAACATCCTTTTGAAT 57.017 34.783 0.00 0.00 0.00 2.57
412 413 5.371115 TTCGGTGAACATCCTTTTGAATC 57.629 39.130 0.00 0.00 0.00 2.52
413 414 4.651778 TCGGTGAACATCCTTTTGAATCT 58.348 39.130 0.00 0.00 0.00 2.40
414 415 4.455533 TCGGTGAACATCCTTTTGAATCTG 59.544 41.667 0.00 0.00 0.00 2.90
415 416 4.216257 CGGTGAACATCCTTTTGAATCTGT 59.784 41.667 0.00 0.00 0.00 3.41
416 417 5.411361 CGGTGAACATCCTTTTGAATCTGTA 59.589 40.000 0.00 0.00 0.00 2.74
417 418 6.072728 CGGTGAACATCCTTTTGAATCTGTAA 60.073 38.462 0.00 0.00 0.00 2.41
418 419 7.521423 CGGTGAACATCCTTTTGAATCTGTAAA 60.521 37.037 0.00 0.00 0.00 2.01
419 420 7.809806 GGTGAACATCCTTTTGAATCTGTAAAG 59.190 37.037 0.00 0.00 0.00 1.85
420 421 7.809806 GTGAACATCCTTTTGAATCTGTAAAGG 59.190 37.037 12.58 12.58 45.94 3.11
427 428 8.976986 CCTTTTGAATCTGTAAAGGATTTCTG 57.023 34.615 13.15 0.00 46.99 3.02
428 429 8.796475 CCTTTTGAATCTGTAAAGGATTTCTGA 58.204 33.333 13.15 0.00 46.99 3.27
462 463 7.977789 TTTATTGGAAATCTTGGAAAAAGGC 57.022 32.000 0.00 0.00 0.00 4.35
463 464 5.565455 ATTGGAAATCTTGGAAAAAGGCA 57.435 34.783 0.00 0.00 0.00 4.75
464 465 5.565455 TTGGAAATCTTGGAAAAAGGCAT 57.435 34.783 0.00 0.00 0.00 4.40
465 466 4.897140 TGGAAATCTTGGAAAAAGGCATG 58.103 39.130 0.00 0.00 0.00 4.06
466 467 4.347583 TGGAAATCTTGGAAAAAGGCATGT 59.652 37.500 0.00 0.00 0.00 3.21
467 468 4.931601 GGAAATCTTGGAAAAAGGCATGTC 59.068 41.667 0.00 0.00 0.00 3.06
468 469 3.855689 ATCTTGGAAAAAGGCATGTCG 57.144 42.857 0.00 0.00 0.00 4.35
469 470 2.582052 TCTTGGAAAAAGGCATGTCGT 58.418 42.857 0.00 0.00 0.00 4.34
470 471 2.293122 TCTTGGAAAAAGGCATGTCGTG 59.707 45.455 0.00 0.00 0.00 4.35
471 472 1.974265 TGGAAAAAGGCATGTCGTGA 58.026 45.000 0.00 0.00 0.00 4.35
472 473 1.606668 TGGAAAAAGGCATGTCGTGAC 59.393 47.619 0.00 0.00 35.41 3.67
473 474 1.068541 GGAAAAAGGCATGTCGTGACC 60.069 52.381 0.00 0.00 36.01 4.02
474 475 0.958822 AAAAAGGCATGTCGTGACCC 59.041 50.000 0.00 0.00 36.01 4.46
475 476 0.179004 AAAAGGCATGTCGTGACCCA 60.179 50.000 0.00 0.00 36.01 4.51
476 477 0.889186 AAAGGCATGTCGTGACCCAC 60.889 55.000 0.00 0.00 36.01 4.61
477 478 2.031919 GGCATGTCGTGACCCACA 59.968 61.111 0.00 0.00 33.40 4.17
478 479 1.377202 GGCATGTCGTGACCCACAT 60.377 57.895 0.00 0.00 33.40 3.21
480 481 1.796151 CATGTCGTGACCCACATGC 59.204 57.895 8.78 0.00 42.52 4.06
481 482 1.741401 ATGTCGTGACCCACATGCG 60.741 57.895 0.00 0.00 35.66 4.73
482 483 2.357034 GTCGTGACCCACATGCGT 60.357 61.111 0.00 0.00 35.66 5.24
483 484 2.048597 TCGTGACCCACATGCGTC 60.049 61.111 0.00 0.00 35.66 5.19
484 485 3.478394 CGTGACCCACATGCGTCG 61.478 66.667 0.00 0.00 33.40 5.12
485 486 3.118454 GTGACCCACATGCGTCGG 61.118 66.667 0.00 0.00 34.08 4.79
491 492 4.758251 CACATGCGTCGGCCCAGA 62.758 66.667 0.00 0.00 38.85 3.86
492 493 4.015406 ACATGCGTCGGCCCAGAA 62.015 61.111 0.00 0.00 38.85 3.02
493 494 2.745884 CATGCGTCGGCCCAGAAA 60.746 61.111 0.00 0.00 38.85 2.52
494 495 2.033448 ATGCGTCGGCCCAGAAAA 59.967 55.556 0.00 0.00 38.85 2.29
495 496 2.040544 ATGCGTCGGCCCAGAAAAG 61.041 57.895 0.00 0.00 38.85 2.27
496 497 3.431725 GCGTCGGCCCAGAAAAGG 61.432 66.667 0.00 0.00 0.00 3.11
503 504 2.597217 CCCAGAAAAGGGCACGCA 60.597 61.111 0.00 0.00 43.10 5.24
504 505 2.629656 CCCAGAAAAGGGCACGCAG 61.630 63.158 0.00 0.00 43.10 5.18
505 506 2.629656 CCAGAAAAGGGCACGCAGG 61.630 63.158 0.00 0.00 0.00 4.85
506 507 2.282462 AGAAAAGGGCACGCAGGG 60.282 61.111 0.00 0.00 0.00 4.45
507 508 2.282180 GAAAAGGGCACGCAGGGA 60.282 61.111 0.00 0.00 0.00 4.20
508 509 2.282462 AAAAGGGCACGCAGGGAG 60.282 61.111 0.00 0.00 0.00 4.30
551 552 3.153364 CGATTGATCGCCATTGTGC 57.847 52.632 0.00 0.00 43.84 4.57
552 553 0.317269 CGATTGATCGCCATTGTGCC 60.317 55.000 0.00 0.00 43.84 5.01
553 554 0.740149 GATTGATCGCCATTGTGCCA 59.260 50.000 0.00 0.00 0.00 4.92
554 555 1.338973 GATTGATCGCCATTGTGCCAT 59.661 47.619 0.00 0.00 0.00 4.40
555 556 0.456628 TTGATCGCCATTGTGCCATG 59.543 50.000 0.00 0.00 0.00 3.66
556 557 1.299620 GATCGCCATTGTGCCATGC 60.300 57.895 0.00 0.00 0.00 4.06
557 558 2.994143 GATCGCCATTGTGCCATGCG 62.994 60.000 0.00 0.00 46.09 4.73
560 561 4.858433 CCATTGTGCCATGCGCGG 62.858 66.667 8.83 0.00 42.51 6.46
561 562 3.813143 CATTGTGCCATGCGCGGA 61.813 61.111 8.83 5.00 42.51 5.54
562 563 3.061231 ATTGTGCCATGCGCGGAA 61.061 55.556 3.18 0.00 42.51 4.30
563 564 2.417257 ATTGTGCCATGCGCGGAAT 61.417 52.632 3.18 0.00 42.51 3.01
564 565 1.100463 ATTGTGCCATGCGCGGAATA 61.100 50.000 3.18 0.00 42.51 1.75
565 566 1.713937 TTGTGCCATGCGCGGAATAG 61.714 55.000 3.18 0.00 42.51 1.73
566 567 2.591429 TGCCATGCGCGGAATAGG 60.591 61.111 3.18 8.75 42.08 2.57
567 568 3.357079 GCCATGCGCGGAATAGGG 61.357 66.667 3.18 5.42 0.00 3.53
568 569 2.669569 CCATGCGCGGAATAGGGG 60.670 66.667 3.18 0.00 0.00 4.79
569 570 3.357079 CATGCGCGGAATAGGGGC 61.357 66.667 3.18 0.00 42.96 5.80
570 571 3.560251 ATGCGCGGAATAGGGGCT 61.560 61.111 3.18 0.00 43.06 5.19
571 572 3.537206 ATGCGCGGAATAGGGGCTC 62.537 63.158 3.18 0.00 43.06 4.70
572 573 4.990553 GCGCGGAATAGGGGCTCC 62.991 72.222 8.83 0.00 39.91 4.70
573 574 4.315941 CGCGGAATAGGGGCTCCC 62.316 72.222 0.00 0.00 45.90 4.30
587 588 2.032924 GGGCTCCCAAAATAACGAATCG 59.967 50.000 0.00 0.00 35.81 3.34
592 593 5.728351 TCCCAAAATAACGAATCGACATC 57.272 39.130 10.55 0.00 0.00 3.06
593 594 5.424757 TCCCAAAATAACGAATCGACATCT 58.575 37.500 10.55 0.00 0.00 2.90
597 598 7.011109 CCCAAAATAACGAATCGACATCTAACT 59.989 37.037 10.55 0.00 0.00 2.24
607 608 2.547826 GACATCTAACTTACGGGTGGC 58.452 52.381 0.00 0.00 0.00 5.01
618 619 2.361610 GGGTGGCAGTGATGGGTG 60.362 66.667 0.00 0.00 0.00 4.61
621 622 0.323725 GGTGGCAGTGATGGGTGATT 60.324 55.000 0.00 0.00 0.00 2.57
685 686 3.008375 TCAGGTAGATGCAAAACTCAGCT 59.992 43.478 0.00 0.00 34.29 4.24
690 691 0.316204 ATGCAAAACTCAGCTGCCAC 59.684 50.000 9.47 0.00 35.13 5.01
720 722 1.290134 AAAGGCCTAGGGTTCCTCTG 58.710 55.000 5.16 0.00 34.61 3.35
722 724 1.690985 GGCCTAGGGTTCCTCTGCT 60.691 63.158 11.72 0.00 34.61 4.24
724 726 0.621082 GCCTAGGGTTCCTCTGCTTT 59.379 55.000 11.72 0.00 34.61 3.51
726 728 1.909302 CCTAGGGTTCCTCTGCTTTCA 59.091 52.381 0.00 0.00 34.61 2.69
727 729 2.507471 CCTAGGGTTCCTCTGCTTTCAT 59.493 50.000 0.00 0.00 34.61 2.57
728 730 3.711704 CCTAGGGTTCCTCTGCTTTCATA 59.288 47.826 0.00 0.00 34.61 2.15
729 731 4.349342 CCTAGGGTTCCTCTGCTTTCATAT 59.651 45.833 0.00 0.00 34.61 1.78
730 732 5.544176 CCTAGGGTTCCTCTGCTTTCATATA 59.456 44.000 0.00 0.00 34.61 0.86
731 733 5.975988 AGGGTTCCTCTGCTTTCATATAA 57.024 39.130 0.00 0.00 0.00 0.98
732 734 6.521527 AGGGTTCCTCTGCTTTCATATAAT 57.478 37.500 0.00 0.00 0.00 1.28
733 735 7.633018 AGGGTTCCTCTGCTTTCATATAATA 57.367 36.000 0.00 0.00 0.00 0.98
734 736 8.045720 AGGGTTCCTCTGCTTTCATATAATAA 57.954 34.615 0.00 0.00 0.00 1.40
735 737 8.673251 AGGGTTCCTCTGCTTTCATATAATAAT 58.327 33.333 0.00 0.00 0.00 1.28
736 738 9.301897 GGGTTCCTCTGCTTTCATATAATAATT 57.698 33.333 0.00 0.00 0.00 1.40
856 1353 0.798771 GGTCTTGAGTAGCTCGCACG 60.799 60.000 0.00 0.00 32.35 5.34
907 1404 1.305201 GAGCAAGAACAAACCCGTCA 58.695 50.000 0.00 0.00 0.00 4.35
908 1405 1.673920 GAGCAAGAACAAACCCGTCAA 59.326 47.619 0.00 0.00 0.00 3.18
938 1436 0.250727 AAACCCATCACCCTCACACG 60.251 55.000 0.00 0.00 0.00 4.49
939 1437 2.436646 CCCATCACCCTCACACGC 60.437 66.667 0.00 0.00 0.00 5.34
940 1438 2.347114 CCATCACCCTCACACGCA 59.653 61.111 0.00 0.00 0.00 5.24
941 1439 2.034879 CCATCACCCTCACACGCAC 61.035 63.158 0.00 0.00 0.00 5.34
971 1469 4.096003 CCTCGCACCACCCGGAAT 62.096 66.667 0.73 0.00 35.59 3.01
1433 1951 3.019564 CTGATGTGTTCCCCTCATTTCC 58.980 50.000 0.00 0.00 0.00 3.13
1447 1965 4.537015 CTCATTTCCGTTCCAACTTTCAC 58.463 43.478 0.00 0.00 0.00 3.18
1449 1967 3.768468 TTTCCGTTCCAACTTTCACAC 57.232 42.857 0.00 0.00 0.00 3.82
1457 1975 4.167554 TCCAACTTTCACACAAACACAC 57.832 40.909 0.00 0.00 0.00 3.82
1491 2009 5.254901 AGACAGGGTAGTGTAGTTCTGTAG 58.745 45.833 0.00 0.00 35.87 2.74
1496 2014 6.152323 CAGGGTAGTGTAGTTCTGTAGCTAAA 59.848 42.308 0.00 0.00 0.00 1.85
1651 2169 2.380932 TGTTGTCCTCCCTCTGTACCTA 59.619 50.000 0.00 0.00 0.00 3.08
1652 2170 3.025262 GTTGTCCTCCCTCTGTACCTAG 58.975 54.545 0.00 0.00 0.00 3.02
1653 2171 1.063867 TGTCCTCCCTCTGTACCTAGC 60.064 57.143 0.00 0.00 0.00 3.42
1654 2172 1.063867 GTCCTCCCTCTGTACCTAGCA 60.064 57.143 0.00 0.00 0.00 3.49
1718 2240 1.931635 AATGCCCCGTTTGGTATGTT 58.068 45.000 0.00 0.00 30.45 2.71
1742 2264 3.891049 AGGCATTCCTGGTGTTCTATTC 58.109 45.455 0.00 0.00 42.34 1.75
1812 2334 3.314693 AGGTGTTCTTCCTCAACCACTA 58.685 45.455 0.00 0.00 0.00 2.74
1943 2468 1.710809 ACATAGAGTGCCCCCTTTGTT 59.289 47.619 0.00 0.00 0.00 2.83
2037 2564 6.873076 GTGTGTATCTACCGTAGCTAGAGTAT 59.127 42.308 0.00 0.00 0.00 2.12
2048 2575 5.703592 CGTAGCTAGAGTATCAGTTCATCCT 59.296 44.000 0.00 0.00 37.82 3.24
2089 2616 3.191791 GTGGTAGACTCTCTCCACTTGTC 59.808 52.174 18.60 0.00 39.46 3.18
2113 2640 1.609794 GAGGTCCTGGGTCCGAACT 60.610 63.158 0.00 0.00 0.00 3.01
2120 2647 0.108138 CTGGGTCCGAACTAGCCTTG 60.108 60.000 0.00 0.00 35.48 3.61
2133 2660 6.442513 AACTAGCCTTGCAGAATTATTGTC 57.557 37.500 0.00 0.00 0.00 3.18
2135 2662 3.973425 AGCCTTGCAGAATTATTGTCCT 58.027 40.909 0.00 0.00 0.00 3.85
2360 2903 5.391950 CCTTGGTAAAATGTGGTTCAGATCG 60.392 44.000 0.00 0.00 0.00 3.69
2370 2913 2.093500 TGGTTCAGATCGGTGGAGATTG 60.093 50.000 0.00 0.00 0.00 2.67
2379 2922 3.228453 TCGGTGGAGATTGGATACTACC 58.772 50.000 0.00 0.00 37.61 3.18
2381 2924 2.963782 GGTGGAGATTGGATACTACCGT 59.036 50.000 0.00 0.00 37.61 4.83
2389 2932 6.650120 AGATTGGATACTACCGTCACATTTT 58.350 36.000 0.00 0.00 37.61 1.82
2392 2935 3.800506 GGATACTACCGTCACATTTTCCG 59.199 47.826 0.00 0.00 0.00 4.30
2400 2943 1.606668 GTCACATTTTCCGCCTGTTGA 59.393 47.619 0.00 0.00 0.00 3.18
2423 2966 3.367630 GGCGTTGCTTATTTGAACCATTG 59.632 43.478 0.00 0.00 0.00 2.82
2474 3020 6.701400 ACCATTCTTCAACAAATTTGTACTGC 59.299 34.615 23.53 0.00 41.31 4.40
2494 3040 2.608752 GCTGTCCATCTTGTTGGCAAAG 60.609 50.000 0.00 0.00 36.66 2.77
2521 3067 6.373759 TGGAAGCCTACTCAGTGATATCTTA 58.626 40.000 3.98 0.00 0.00 2.10
2537 3083 9.922305 GTGATATCTTACTTTGAATGCTAACAC 57.078 33.333 3.98 0.00 0.00 3.32
2545 3091 7.426929 ACTTTGAATGCTAACACACTAAGAG 57.573 36.000 0.00 0.00 0.00 2.85
2584 3130 0.957395 CAGCACCTCAGCGAAATGGT 60.957 55.000 0.00 0.00 40.15 3.55
2712 3258 3.476552 TGGCAAAGTTGTGAGGTCTTAG 58.523 45.455 0.00 0.00 0.00 2.18
2741 3287 2.421424 GTCCTGCTTTGAATGCTAGTGG 59.579 50.000 4.67 2.64 0.00 4.00
2805 3351 6.292757 CGAGATGAGGTTCTAATCATTGCAAG 60.293 42.308 4.94 0.00 36.30 4.01
2806 3352 6.656902 AGATGAGGTTCTAATCATTGCAAGA 58.343 36.000 4.94 3.10 36.30 3.02
2807 3353 7.288560 AGATGAGGTTCTAATCATTGCAAGAT 58.711 34.615 4.94 5.47 36.30 2.40
2809 3355 9.228949 GATGAGGTTCTAATCATTGCAAGATAT 57.771 33.333 4.94 0.00 36.30 1.63
2810 3356 8.613060 TGAGGTTCTAATCATTGCAAGATATC 57.387 34.615 4.94 0.00 0.00 1.63
2821 3367 9.768662 ATCATTGCAAGATATCCATTTTTAACC 57.231 29.630 4.94 0.00 0.00 2.85
2822 3368 8.756927 TCATTGCAAGATATCCATTTTTAACCA 58.243 29.630 4.94 0.00 0.00 3.67
2922 3478 2.040278 AGTAGTCCATCTTGGCAAAGCA 59.960 45.455 0.00 0.00 37.47 3.91
2958 3514 3.166657 GCGATGTCTTGCTTTGAATGTC 58.833 45.455 0.00 0.00 0.00 3.06
3075 3631 7.820648 TCATTTACTGCCTTTTGATCTCTTTC 58.179 34.615 0.00 0.00 0.00 2.62
3085 3641 7.308049 GCCTTTTGATCTCTTTCGAGTTTAACT 60.308 37.037 0.00 0.00 38.45 2.24
3086 3642 9.204570 CCTTTTGATCTCTTTCGAGTTTAACTA 57.795 33.333 0.00 0.00 38.45 2.24
3103 3721 9.004717 AGTTTAACTAGCCTTTTGATCTCTTTC 57.995 33.333 0.00 0.00 0.00 2.62
3116 3734 9.537192 TTTTGATCTCTTTCGAGTTTAACTACA 57.463 29.630 0.00 0.00 38.45 2.74
3124 3742 8.761497 TCTTTCGAGTTTAACTACAAGTCATTG 58.239 33.333 0.00 0.00 42.46 2.82
3141 3759 7.277174 AGTCATTGTTTAGGAAGGTTCTTTG 57.723 36.000 0.00 0.00 0.00 2.77
3327 3947 6.018262 TGAGTTGAATTAGTGGTCGTTCTTTG 60.018 38.462 0.00 0.00 0.00 2.77
3394 4014 4.481930 TTGGTAATGTCTTGCTTCAACG 57.518 40.909 0.00 0.00 0.00 4.10
3631 4260 4.481368 TTGGTTCTGCACTTCGGTATAT 57.519 40.909 0.00 0.00 0.00 0.86
3672 4409 8.552034 CCAATTACAGCTACTATCTTTAACTGC 58.448 37.037 0.00 0.00 0.00 4.40
3673 4410 8.552034 CAATTACAGCTACTATCTTTAACTGCC 58.448 37.037 0.00 0.00 0.00 4.85
3674 4411 5.941555 ACAGCTACTATCTTTAACTGCCT 57.058 39.130 0.00 0.00 0.00 4.75
3688 4425 6.645790 TTAACTGCCTAGCCTGTATAGTAC 57.354 41.667 0.00 0.00 0.00 2.73
3765 4502 4.127171 TCACGGCTATTATCTTTTCCTGC 58.873 43.478 0.00 0.00 0.00 4.85
3824 4561 8.494016 AAACTATGTTCTTTAGATTTCCCTCG 57.506 34.615 0.00 0.00 0.00 4.63
3848 4585 6.252441 CGTAAATATTTGATTTTGCCGCTGAA 59.748 34.615 11.05 0.00 0.00 3.02
4058 4796 3.200593 GCAGCGGTGATGAGCCAG 61.201 66.667 20.69 0.00 0.00 4.85
4093 4834 5.506317 CGAAGATCAAATAACAATCCCTGGC 60.506 44.000 0.00 0.00 0.00 4.85
4101 4842 1.000896 CAATCCCTGGCGGTTTCCT 60.001 57.895 0.00 0.00 0.00 3.36
4125 4866 7.067494 CCTCAGGGTAAACTGAAAGGATAAATG 59.933 40.741 0.00 0.00 46.05 2.32
4247 4988 7.201875 ACTAGTTATTAGAGAGAGCTTGGAAGC 60.202 40.741 3.00 3.00 41.25 3.86
4274 5015 6.424176 TGGAATTGCATCGTTATCGTTAAA 57.576 33.333 0.00 0.00 38.33 1.52
4307 5048 6.318648 GTCATGTGCCCTTGTAAATCTGATTA 59.681 38.462 2.85 0.00 0.00 1.75
4345 5086 2.622942 TGTTTGTTCATCCTCAGTTGCC 59.377 45.455 0.00 0.00 0.00 4.52
4452 5193 6.530019 AAATGTTGGTATGACCTTTGGATC 57.470 37.500 0.00 0.00 39.58 3.36
4453 5194 4.649267 TGTTGGTATGACCTTTGGATCA 57.351 40.909 0.00 0.00 39.58 2.92
4470 5211 3.750130 GGATCATGTGTCATGTATGGAGC 59.250 47.826 9.13 0.00 0.00 4.70
4478 5219 2.027745 GTCATGTATGGAGCGGATGGAT 60.028 50.000 0.00 0.00 0.00 3.41
4502 5243 4.092279 TGGGCATTGTTGAATTGTGGATA 58.908 39.130 0.00 0.00 0.00 2.59
4630 5372 4.649674 TCCAACCATGAGACCTGTACTATC 59.350 45.833 0.00 0.00 0.00 2.08
4632 5374 5.833667 CCAACCATGAGACCTGTACTATCTA 59.166 44.000 0.00 0.00 0.00 1.98
4713 5459 5.468746 TGGAAGAACGTGAGAACCAAATTAG 59.531 40.000 0.00 0.00 0.00 1.73
4744 5490 1.745264 CACCCACGGCAACCATTTT 59.255 52.632 0.00 0.00 0.00 1.82
4745 5491 0.105778 CACCCACGGCAACCATTTTT 59.894 50.000 0.00 0.00 0.00 1.94
4762 5508 6.171921 CCATTTTTGCATAACCCTTTCATGA 58.828 36.000 0.00 0.00 0.00 3.07
4781 5545 8.800231 TTCATGAACACAAATTCATACACAAG 57.200 30.769 3.38 0.00 45.52 3.16
4788 5552 7.865707 ACACAAATTCATACACAAGAGTTCTC 58.134 34.615 0.00 0.00 0.00 2.87
4822 5586 4.829492 AGTGAAATTCTTCAACTCCCCAAG 59.171 41.667 0.00 0.00 43.18 3.61
4834 5598 4.308526 ACTCCCCAAGAGAAAAATCTCC 57.691 45.455 2.35 0.00 46.50 3.71
4852 5616 1.354031 TCCCAGGCAAGTGAAGCAATA 59.646 47.619 0.00 0.00 0.00 1.90
4891 5655 8.402472 GTTGCCAAATGTAGCATATAAAGTGTA 58.598 33.333 0.00 0.00 39.11 2.90
5033 5797 2.276201 GTACATACATGAACTGCGCCA 58.724 47.619 4.18 0.00 0.00 5.69
5039 5803 5.409520 ACATACATGAACTGCGCCATATAAG 59.590 40.000 4.18 0.00 0.00 1.73
5046 5810 2.289072 ACTGCGCCATATAAGCACCTAG 60.289 50.000 4.18 0.00 36.79 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.640499 CCAATGAACAAAATTAACTCGCTGAA 59.360 34.615 0.00 0.00 0.00 3.02
1 2 6.016693 TCCAATGAACAAAATTAACTCGCTGA 60.017 34.615 0.00 0.00 0.00 4.26
2 3 6.148948 TCCAATGAACAAAATTAACTCGCTG 58.851 36.000 0.00 0.00 0.00 5.18
3 4 6.325919 TCCAATGAACAAAATTAACTCGCT 57.674 33.333 0.00 0.00 0.00 4.93
4 5 7.581011 AATCCAATGAACAAAATTAACTCGC 57.419 32.000 0.00 0.00 0.00 5.03
70 71 9.473640 TCGATGAATTTTTGTGAATTTGATGAA 57.526 25.926 0.00 0.00 29.75 2.57
71 72 9.473640 TTCGATGAATTTTTGTGAATTTGATGA 57.526 25.926 0.00 0.00 29.75 2.92
85 86 9.810231 GCACATTTGTTTAATTCGATGAATTTT 57.190 25.926 9.77 0.00 41.64 1.82
86 87 8.986847 TGCACATTTGTTTAATTCGATGAATTT 58.013 25.926 9.77 0.00 41.64 1.82
87 88 8.531622 TGCACATTTGTTTAATTCGATGAATT 57.468 26.923 9.47 9.47 43.49 2.17
88 89 8.706492 ATGCACATTTGTTTAATTCGATGAAT 57.294 26.923 0.00 0.00 33.25 2.57
89 90 7.811713 TGATGCACATTTGTTTAATTCGATGAA 59.188 29.630 0.00 0.00 0.00 2.57
90 91 7.311408 TGATGCACATTTGTTTAATTCGATGA 58.689 30.769 0.00 0.00 0.00 2.92
91 92 7.509050 TGATGCACATTTGTTTAATTCGATG 57.491 32.000 0.00 0.00 0.00 3.84
92 93 8.531622 TTTGATGCACATTTGTTTAATTCGAT 57.468 26.923 0.00 0.00 0.00 3.59
93 94 7.936950 TTTGATGCACATTTGTTTAATTCGA 57.063 28.000 0.00 0.00 0.00 3.71
94 95 9.674208 GTATTTGATGCACATTTGTTTAATTCG 57.326 29.630 0.00 0.00 0.00 3.34
102 103 9.666626 CAAATTTTGTATTTGATGCACATTTGT 57.333 25.926 4.62 0.00 40.42 2.83
103 104 9.666626 ACAAATTTTGTATTTGATGCACATTTG 57.333 25.926 12.98 14.51 43.27 2.32
105 106 9.881529 GAACAAATTTTGTATTTGATGCACATT 57.118 25.926 14.81 0.00 44.59 2.71
106 107 9.053840 TGAACAAATTTTGTATTTGATGCACAT 57.946 25.926 14.81 0.00 44.59 3.21
107 108 8.429493 TGAACAAATTTTGTATTTGATGCACA 57.571 26.923 14.81 0.00 44.59 4.57
108 109 9.532697 GATGAACAAATTTTGTATTTGATGCAC 57.467 29.630 14.81 0.00 44.59 4.57
109 110 8.433893 CGATGAACAAATTTTGTATTTGATGCA 58.566 29.630 14.81 0.00 44.59 3.96
110 111 8.646356 TCGATGAACAAATTTTGTATTTGATGC 58.354 29.630 14.81 6.19 44.59 3.91
149 150 9.212641 TGAACAAACAAGTTTTGAATTTGATGA 57.787 25.926 3.81 0.00 33.42 2.92
150 151 9.991388 ATGAACAAACAAGTTTTGAATTTGATG 57.009 25.926 3.81 4.71 33.42 3.07
218 219 8.550376 CAAACTTTGAATCCGATGAACATTTTT 58.450 29.630 0.00 0.00 0.00 1.94
219 220 7.710475 ACAAACTTTGAATCCGATGAACATTTT 59.290 29.630 8.55 0.00 0.00 1.82
220 221 7.209475 ACAAACTTTGAATCCGATGAACATTT 58.791 30.769 8.55 0.00 0.00 2.32
221 222 6.748132 ACAAACTTTGAATCCGATGAACATT 58.252 32.000 8.55 0.00 0.00 2.71
222 223 6.331369 ACAAACTTTGAATCCGATGAACAT 57.669 33.333 8.55 0.00 0.00 2.71
223 224 5.766150 ACAAACTTTGAATCCGATGAACA 57.234 34.783 8.55 0.00 0.00 3.18
224 225 6.205784 TGAACAAACTTTGAATCCGATGAAC 58.794 36.000 8.55 0.00 0.00 3.18
225 226 6.384258 TGAACAAACTTTGAATCCGATGAA 57.616 33.333 8.55 0.00 0.00 2.57
226 227 6.206438 TGATGAACAAACTTTGAATCCGATGA 59.794 34.615 8.55 0.00 0.00 2.92
227 228 6.380995 TGATGAACAAACTTTGAATCCGATG 58.619 36.000 8.55 0.00 0.00 3.84
228 229 6.573664 TGATGAACAAACTTTGAATCCGAT 57.426 33.333 8.55 0.00 0.00 4.18
229 230 6.384258 TTGATGAACAAACTTTGAATCCGA 57.616 33.333 8.55 0.00 35.39 4.55
263 264 9.878667 TGAGCATTTTTCAATAATGATGAACAT 57.121 25.926 4.87 0.00 41.45 2.71
264 265 9.878667 ATGAGCATTTTTCAATAATGATGAACA 57.121 25.926 4.87 0.00 36.57 3.18
331 332 9.919348 CGTGATTTCAAAAGAATGAACATTTTT 57.081 25.926 1.56 0.09 38.95 1.94
332 333 9.311916 TCGTGATTTCAAAAGAATGAACATTTT 57.688 25.926 1.56 0.00 38.95 1.82
333 334 8.870160 TCGTGATTTCAAAAGAATGAACATTT 57.130 26.923 1.56 0.00 38.95 2.32
334 335 8.755018 GTTCGTGATTTCAAAAGAATGAACATT 58.245 29.630 14.37 0.00 38.95 2.71
335 336 7.920151 TGTTCGTGATTTCAAAAGAATGAACAT 59.080 29.630 16.33 0.00 38.95 2.71
336 337 7.254137 TGTTCGTGATTTCAAAAGAATGAACA 58.746 30.769 16.33 16.33 38.95 3.18
337 338 7.678194 TGTTCGTGATTTCAAAAGAATGAAC 57.322 32.000 13.29 13.29 38.95 3.18
338 339 8.870160 AATGTTCGTGATTTCAAAAGAATGAA 57.130 26.923 0.00 0.00 37.53 2.57
339 340 8.870160 AAATGTTCGTGATTTCAAAAGAATGA 57.130 26.923 0.00 0.00 0.00 2.57
340 341 9.919348 AAAAATGTTCGTGATTTCAAAAGAATG 57.081 25.926 0.00 0.00 0.00 2.67
369 370 9.063615 ACCGAATTTATAAACAGTTCTTGAACT 57.936 29.630 9.93 9.93 0.00 3.01
370 371 9.113876 CACCGAATTTATAAACAGTTCTTGAAC 57.886 33.333 0.00 5.44 0.00 3.18
371 372 9.058174 TCACCGAATTTATAAACAGTTCTTGAA 57.942 29.630 0.00 0.00 0.00 2.69
372 373 8.610248 TCACCGAATTTATAAACAGTTCTTGA 57.390 30.769 0.00 4.24 0.00 3.02
373 374 9.113876 GTTCACCGAATTTATAAACAGTTCTTG 57.886 33.333 0.00 2.23 0.00 3.02
374 375 8.842280 TGTTCACCGAATTTATAAACAGTTCTT 58.158 29.630 0.00 0.00 0.00 2.52
375 376 8.385898 TGTTCACCGAATTTATAAACAGTTCT 57.614 30.769 0.00 0.00 0.00 3.01
376 377 9.274065 GATGTTCACCGAATTTATAAACAGTTC 57.726 33.333 0.00 0.37 0.00 3.01
377 378 8.241367 GGATGTTCACCGAATTTATAAACAGTT 58.759 33.333 0.00 0.00 0.00 3.16
378 379 7.610305 AGGATGTTCACCGAATTTATAAACAGT 59.390 33.333 0.00 0.00 0.00 3.55
379 380 7.985476 AGGATGTTCACCGAATTTATAAACAG 58.015 34.615 0.00 0.00 0.00 3.16
380 381 7.931578 AGGATGTTCACCGAATTTATAAACA 57.068 32.000 0.00 0.00 0.00 2.83
381 382 9.634163 AAAAGGATGTTCACCGAATTTATAAAC 57.366 29.630 0.00 0.00 0.00 2.01
382 383 9.632807 CAAAAGGATGTTCACCGAATTTATAAA 57.367 29.630 0.00 0.00 0.00 1.40
383 384 9.015367 TCAAAAGGATGTTCACCGAATTTATAA 57.985 29.630 0.00 0.00 0.00 0.98
384 385 8.568676 TCAAAAGGATGTTCACCGAATTTATA 57.431 30.769 0.00 0.00 0.00 0.98
385 386 7.461182 TCAAAAGGATGTTCACCGAATTTAT 57.539 32.000 0.00 0.00 0.00 1.40
386 387 6.885952 TCAAAAGGATGTTCACCGAATTTA 57.114 33.333 0.00 0.00 0.00 1.40
387 388 5.782893 TCAAAAGGATGTTCACCGAATTT 57.217 34.783 0.00 0.00 0.00 1.82
388 389 5.782893 TTCAAAAGGATGTTCACCGAATT 57.217 34.783 0.00 0.00 0.00 2.17
389 390 5.711976 AGATTCAAAAGGATGTTCACCGAAT 59.288 36.000 0.00 0.00 0.00 3.34
390 391 5.048782 CAGATTCAAAAGGATGTTCACCGAA 60.049 40.000 0.00 0.00 0.00 4.30
391 392 4.455533 CAGATTCAAAAGGATGTTCACCGA 59.544 41.667 0.00 0.00 0.00 4.69
392 393 4.216257 ACAGATTCAAAAGGATGTTCACCG 59.784 41.667 0.00 0.00 0.00 4.94
393 394 5.712152 ACAGATTCAAAAGGATGTTCACC 57.288 39.130 0.00 0.00 0.00 4.02
394 395 8.733857 CTTTACAGATTCAAAAGGATGTTCAC 57.266 34.615 0.00 0.00 0.00 3.18
436 437 9.013229 GCCTTTTTCCAAGATTTCCAATAAATT 57.987 29.630 0.00 0.00 0.00 1.82
437 438 8.162746 TGCCTTTTTCCAAGATTTCCAATAAAT 58.837 29.630 0.00 0.00 0.00 1.40
438 439 7.512992 TGCCTTTTTCCAAGATTTCCAATAAA 58.487 30.769 0.00 0.00 0.00 1.40
439 440 7.072263 TGCCTTTTTCCAAGATTTCCAATAA 57.928 32.000 0.00 0.00 0.00 1.40
440 441 6.678568 TGCCTTTTTCCAAGATTTCCAATA 57.321 33.333 0.00 0.00 0.00 1.90
441 442 5.565455 TGCCTTTTTCCAAGATTTCCAAT 57.435 34.783 0.00 0.00 0.00 3.16
442 443 5.163216 ACATGCCTTTTTCCAAGATTTCCAA 60.163 36.000 0.00 0.00 0.00 3.53
443 444 4.347583 ACATGCCTTTTTCCAAGATTTCCA 59.652 37.500 0.00 0.00 0.00 3.53
444 445 4.898320 ACATGCCTTTTTCCAAGATTTCC 58.102 39.130 0.00 0.00 0.00 3.13
445 446 4.622740 CGACATGCCTTTTTCCAAGATTTC 59.377 41.667 0.00 0.00 0.00 2.17
446 447 4.039124 ACGACATGCCTTTTTCCAAGATTT 59.961 37.500 0.00 0.00 0.00 2.17
447 448 3.573967 ACGACATGCCTTTTTCCAAGATT 59.426 39.130 0.00 0.00 0.00 2.40
448 449 3.057315 CACGACATGCCTTTTTCCAAGAT 60.057 43.478 0.00 0.00 0.00 2.40
449 450 2.293122 CACGACATGCCTTTTTCCAAGA 59.707 45.455 0.00 0.00 0.00 3.02
450 451 2.293122 TCACGACATGCCTTTTTCCAAG 59.707 45.455 0.00 0.00 0.00 3.61
451 452 2.034053 GTCACGACATGCCTTTTTCCAA 59.966 45.455 0.00 0.00 0.00 3.53
452 453 1.606668 GTCACGACATGCCTTTTTCCA 59.393 47.619 0.00 0.00 0.00 3.53
453 454 1.068541 GGTCACGACATGCCTTTTTCC 60.069 52.381 0.00 0.00 0.00 3.13
454 455 1.068541 GGGTCACGACATGCCTTTTTC 60.069 52.381 0.00 0.00 0.00 2.29
455 456 0.958822 GGGTCACGACATGCCTTTTT 59.041 50.000 0.00 0.00 0.00 1.94
456 457 0.179004 TGGGTCACGACATGCCTTTT 60.179 50.000 0.00 0.00 0.00 2.27
457 458 0.889186 GTGGGTCACGACATGCCTTT 60.889 55.000 0.00 0.00 0.00 3.11
458 459 1.302511 GTGGGTCACGACATGCCTT 60.303 57.895 0.00 0.00 0.00 4.35
459 460 1.841302 ATGTGGGTCACGACATGCCT 61.841 55.000 0.00 0.00 43.25 4.75
460 461 1.377202 ATGTGGGTCACGACATGCC 60.377 57.895 0.00 0.00 43.25 4.40
461 462 4.301505 ATGTGGGTCACGACATGC 57.698 55.556 0.00 0.00 43.25 4.06
463 464 1.741401 CGCATGTGGGTCACGACAT 60.741 57.895 0.00 0.00 45.36 3.06
464 465 2.356913 CGCATGTGGGTCACGACA 60.357 61.111 0.00 0.00 39.69 4.35
465 466 2.357034 ACGCATGTGGGTCACGAC 60.357 61.111 11.65 0.00 37.14 4.34
474 475 4.758251 TCTGGGCCGACGCATGTG 62.758 66.667 4.30 4.30 38.19 3.21
475 476 3.545124 TTTCTGGGCCGACGCATGT 62.545 57.895 0.00 0.00 38.19 3.21
476 477 2.257286 CTTTTCTGGGCCGACGCATG 62.257 60.000 0.00 0.00 38.19 4.06
477 478 2.033448 TTTTCTGGGCCGACGCAT 59.967 55.556 0.00 0.00 38.19 4.73
478 479 2.668212 CTTTTCTGGGCCGACGCA 60.668 61.111 0.00 0.00 36.38 5.24
479 480 3.431725 CCTTTTCTGGGCCGACGC 61.432 66.667 0.00 0.00 0.00 5.19
480 481 2.746277 CCCTTTTCTGGGCCGACG 60.746 66.667 0.00 0.00 40.84 5.12
487 488 2.629656 CCTGCGTGCCCTTTTCTGG 61.630 63.158 0.00 0.00 0.00 3.86
488 489 2.629656 CCCTGCGTGCCCTTTTCTG 61.630 63.158 0.00 0.00 0.00 3.02
489 490 2.282462 CCCTGCGTGCCCTTTTCT 60.282 61.111 0.00 0.00 0.00 2.52
490 491 2.282180 TCCCTGCGTGCCCTTTTC 60.282 61.111 0.00 0.00 0.00 2.29
491 492 2.282462 CTCCCTGCGTGCCCTTTT 60.282 61.111 0.00 0.00 0.00 2.27
534 535 3.557207 GGCACAATGGCGATCAATC 57.443 52.632 0.00 0.00 31.79 2.67
548 549 2.633657 CTATTCCGCGCATGGCAC 59.366 61.111 8.75 0.00 43.84 5.01
549 550 2.591429 CCTATTCCGCGCATGGCA 60.591 61.111 8.75 0.00 43.84 4.92
550 551 3.357079 CCCTATTCCGCGCATGGC 61.357 66.667 8.75 0.00 38.69 4.40
551 552 2.669569 CCCCTATTCCGCGCATGG 60.670 66.667 8.75 0.38 0.00 3.66
552 553 3.357079 GCCCCTATTCCGCGCATG 61.357 66.667 8.75 0.00 0.00 4.06
553 554 3.537206 GAGCCCCTATTCCGCGCAT 62.537 63.158 8.75 0.00 0.00 4.73
554 555 4.235762 GAGCCCCTATTCCGCGCA 62.236 66.667 8.75 0.00 0.00 6.09
555 556 4.990553 GGAGCCCCTATTCCGCGC 62.991 72.222 0.00 0.00 0.00 6.86
556 557 4.315941 GGGAGCCCCTATTCCGCG 62.316 72.222 0.00 0.00 41.34 6.46
557 558 2.279037 TTTGGGAGCCCCTATTCCGC 62.279 60.000 11.10 0.00 45.70 5.54
558 559 0.257616 TTTTGGGAGCCCCTATTCCG 59.742 55.000 11.10 0.00 45.70 4.30
559 560 2.775490 ATTTTGGGAGCCCCTATTCC 57.225 50.000 11.10 0.00 45.70 3.01
560 561 3.568430 CGTTATTTTGGGAGCCCCTATTC 59.432 47.826 11.10 0.00 45.70 1.75
561 562 3.203487 TCGTTATTTTGGGAGCCCCTATT 59.797 43.478 11.10 0.00 45.70 1.73
562 563 2.781174 TCGTTATTTTGGGAGCCCCTAT 59.219 45.455 11.10 5.47 45.70 2.57
563 564 2.198336 TCGTTATTTTGGGAGCCCCTA 58.802 47.619 11.10 1.49 45.70 3.53
564 565 0.996583 TCGTTATTTTGGGAGCCCCT 59.003 50.000 11.10 0.00 45.70 4.79
565 566 1.842052 TTCGTTATTTTGGGAGCCCC 58.158 50.000 2.49 3.42 45.71 5.80
566 567 2.032924 CGATTCGTTATTTTGGGAGCCC 59.967 50.000 0.00 0.00 0.00 5.19
567 568 2.940410 TCGATTCGTTATTTTGGGAGCC 59.060 45.455 5.89 0.00 0.00 4.70
568 569 3.372822 TGTCGATTCGTTATTTTGGGAGC 59.627 43.478 5.89 0.00 0.00 4.70
569 570 5.523916 AGATGTCGATTCGTTATTTTGGGAG 59.476 40.000 5.89 0.00 0.00 4.30
570 571 5.424757 AGATGTCGATTCGTTATTTTGGGA 58.575 37.500 5.89 0.00 0.00 4.37
571 572 5.734855 AGATGTCGATTCGTTATTTTGGG 57.265 39.130 5.89 0.00 0.00 4.12
572 573 7.906160 AGTTAGATGTCGATTCGTTATTTTGG 58.094 34.615 5.89 0.00 0.00 3.28
587 588 2.093869 TGCCACCCGTAAGTTAGATGTC 60.094 50.000 0.00 0.00 0.00 3.06
592 593 1.274167 TCACTGCCACCCGTAAGTTAG 59.726 52.381 0.00 0.00 0.00 2.34
593 594 1.340088 TCACTGCCACCCGTAAGTTA 58.660 50.000 0.00 0.00 0.00 2.24
597 598 1.298340 CCATCACTGCCACCCGTAA 59.702 57.895 0.00 0.00 0.00 3.18
607 608 9.874205 AAAATTTATGTAAATCACCCATCACTG 57.126 29.630 0.00 0.00 35.00 3.66
637 638 1.349688 AGGACGGTGCATTTCTTACCA 59.650 47.619 1.61 0.00 34.10 3.25
646 647 3.016736 CCTGAAATAAAGGACGGTGCAT 58.983 45.455 1.61 0.00 36.91 3.96
647 648 2.224670 ACCTGAAATAAAGGACGGTGCA 60.225 45.455 1.61 0.00 38.27 4.57
838 1335 0.109689 ACGTGCGAGCTACTCAAGAC 60.110 55.000 0.00 0.00 0.00 3.01
856 1353 4.351938 GCCAAAAACGGGCCGGAC 62.352 66.667 31.78 0.00 45.87 4.79
907 1404 3.639561 GTGATGGGTTTTGGGTAGTTGTT 59.360 43.478 0.00 0.00 0.00 2.83
908 1405 3.227614 GTGATGGGTTTTGGGTAGTTGT 58.772 45.455 0.00 0.00 0.00 3.32
939 1437 3.491598 GAGGTGGGGTGGGTGTGTG 62.492 68.421 0.00 0.00 0.00 3.82
940 1438 3.175710 GAGGTGGGGTGGGTGTGT 61.176 66.667 0.00 0.00 0.00 3.72
941 1439 4.329545 CGAGGTGGGGTGGGTGTG 62.330 72.222 0.00 0.00 0.00 3.82
1405 1923 1.550130 GGGAACACATCAGGGTCGGA 61.550 60.000 0.00 0.00 0.00 4.55
1433 1951 3.606346 GTGTTTGTGTGAAAGTTGGAACG 59.394 43.478 0.00 0.00 0.00 3.95
1447 1965 2.110990 CACAGCAATCGTGTGTTTGTG 58.889 47.619 10.61 10.61 40.44 3.33
1449 1967 2.287644 TCTCACAGCAATCGTGTGTTTG 59.712 45.455 3.31 0.05 44.75 2.93
1457 1975 0.036952 ACCCTGTCTCACAGCAATCG 60.037 55.000 0.00 0.00 44.63 3.34
1491 2009 6.442513 AGACAAGCCAATGTAAGATTTAGC 57.557 37.500 0.00 0.00 32.57 3.09
1496 2014 4.702131 GGACAAGACAAGCCAATGTAAGAT 59.298 41.667 0.00 0.00 32.57 2.40
1651 2169 2.887151 ACAAGAGGGTAATGCTTGCT 57.113 45.000 0.00 0.00 41.97 3.91
1652 2170 3.507622 AGAAACAAGAGGGTAATGCTTGC 59.492 43.478 0.00 0.00 41.97 4.01
1653 2171 5.006386 AGAGAAACAAGAGGGTAATGCTTG 58.994 41.667 0.00 0.00 43.41 4.01
1654 2172 5.248380 AGAGAAACAAGAGGGTAATGCTT 57.752 39.130 0.00 0.00 0.00 3.91
1698 2220 2.810870 ACATACCAAACGGGGCATTA 57.189 45.000 0.00 0.00 42.91 1.90
1700 2222 2.291024 TGTAACATACCAAACGGGGCAT 60.291 45.455 0.00 0.00 42.91 4.40
1702 2224 1.741145 CTGTAACATACCAAACGGGGC 59.259 52.381 0.00 0.00 42.91 5.80
1739 2261 2.386661 ACGAATCAGGAAGCACGAAT 57.613 45.000 0.00 0.00 0.00 3.34
1742 2264 2.540515 ACATACGAATCAGGAAGCACG 58.459 47.619 0.00 0.00 0.00 5.34
1812 2334 4.354087 ACTGATCCCCTAAAGGAAAACTGT 59.646 41.667 0.00 0.00 40.04 3.55
1933 2458 1.710816 TTGCCACTTAACAAAGGGGG 58.289 50.000 8.44 1.88 43.65 5.40
1943 2468 2.754552 GGCTTCATCACATTGCCACTTA 59.245 45.455 0.00 0.00 42.79 2.24
2037 2564 1.209504 CCCGCCTTTAGGATGAACTGA 59.790 52.381 0.00 0.00 37.39 3.41
2048 2575 4.540735 GCGCTAGGCCCGCCTTTA 62.541 66.667 14.63 0.00 45.70 1.85
2113 2640 5.116084 AGGACAATAATTCTGCAAGGCTA 57.884 39.130 0.00 0.00 0.00 3.93
2172 2714 1.098050 GGCATACCCAGTGCTCAAAG 58.902 55.000 0.00 0.00 42.16 2.77
2360 2903 2.963782 ACGGTAGTATCCAATCTCCACC 59.036 50.000 0.00 0.00 0.00 4.61
2370 2913 3.800506 CGGAAAATGTGACGGTAGTATCC 59.199 47.826 0.00 0.00 0.00 2.59
2379 2922 0.591170 AACAGGCGGAAAATGTGACG 59.409 50.000 0.00 0.00 0.00 4.35
2381 2924 1.879380 CTCAACAGGCGGAAAATGTGA 59.121 47.619 0.00 0.00 0.00 3.58
2400 2943 2.235016 TGGTTCAAATAAGCAACGCCT 58.765 42.857 0.00 0.00 0.00 5.52
2403 2946 6.324819 AGATCAATGGTTCAAATAAGCAACG 58.675 36.000 0.00 0.00 0.00 4.10
2404 2947 8.538409 AAAGATCAATGGTTCAAATAAGCAAC 57.462 30.769 0.00 0.00 0.00 4.17
2474 3020 2.608752 GCTTTGCCAACAAGATGGACAG 60.609 50.000 0.01 0.00 43.54 3.51
2494 3040 1.208052 TCACTGAGTAGGCTTCCATGC 59.792 52.381 0.00 0.00 0.00 4.06
2521 3067 6.073003 GCTCTTAGTGTGTTAGCATTCAAAGT 60.073 38.462 0.00 0.00 33.38 2.66
2537 3083 6.638873 CCGTTAGAGATACATTGCTCTTAGTG 59.361 42.308 0.00 0.00 41.46 2.74
2545 3091 4.025647 GCTGAACCGTTAGAGATACATTGC 60.026 45.833 0.00 0.00 0.00 3.56
2617 3163 6.749923 AGAGATTCAAAGGCAGTAAATGAC 57.250 37.500 0.00 0.00 37.09 3.06
2741 3287 6.885735 GTCAGAGAGACATCTTTTCTTAGC 57.114 41.667 0.00 0.00 46.77 3.09
2805 3351 9.588096 AACCCTAGATGGTTAAAAATGGATATC 57.412 33.333 1.87 0.00 46.70 1.63
2806 3352 9.367160 CAACCCTAGATGGTTAAAAATGGATAT 57.633 33.333 3.40 0.00 46.85 1.63
2807 3353 8.340757 ACAACCCTAGATGGTTAAAAATGGATA 58.659 33.333 3.40 0.00 46.85 2.59
2809 3355 6.557568 ACAACCCTAGATGGTTAAAAATGGA 58.442 36.000 3.40 0.00 46.85 3.41
2810 3356 6.850752 ACAACCCTAGATGGTTAAAAATGG 57.149 37.500 3.40 0.00 46.85 3.16
2815 3361 4.993028 AGCAACAACCCTAGATGGTTAAA 58.007 39.130 3.40 0.00 46.85 1.52
2816 3362 4.650972 AGCAACAACCCTAGATGGTTAA 57.349 40.909 3.40 0.00 46.85 2.01
2821 3367 5.245531 TGAAGTAAGCAACAACCCTAGATG 58.754 41.667 0.00 0.00 0.00 2.90
2822 3368 5.499004 TGAAGTAAGCAACAACCCTAGAT 57.501 39.130 0.00 0.00 0.00 1.98
2862 3418 9.874215 GTTAAGAATGGTCACAAACTAAACTAC 57.126 33.333 0.00 0.00 0.00 2.73
3075 3631 6.814146 AGAGATCAAAAGGCTAGTTAAACTCG 59.186 38.462 0.00 0.00 0.00 4.18
3103 3721 9.793245 CTAAACAATGACTTGTAGTTAAACTCG 57.207 33.333 0.00 0.00 44.83 4.18
3115 3733 6.884280 AGAACCTTCCTAAACAATGACTTG 57.116 37.500 0.00 0.00 38.39 3.16
3116 3734 7.201911 CCAAAGAACCTTCCTAAACAATGACTT 60.202 37.037 0.00 0.00 0.00 3.01
3124 3742 4.466827 TGGACCAAAGAACCTTCCTAAAC 58.533 43.478 0.00 0.00 0.00 2.01
3129 3747 3.441500 AGATGGACCAAAGAACCTTCC 57.558 47.619 0.00 0.00 0.00 3.46
3141 3759 0.529378 CAGCTTTGCCAAGATGGACC 59.471 55.000 7.86 0.00 41.89 4.46
3327 3947 2.614983 TGGACTACAAAACAACTTCGGC 59.385 45.455 0.00 0.00 0.00 5.54
3413 4033 4.166888 TCTGCTGATCTGCGCCCC 62.167 66.667 18.32 0.00 35.36 5.80
3631 4260 8.200792 AGCTGTAATTGGTATTGTTCAACAAAA 58.799 29.630 7.14 0.00 41.96 2.44
3651 4284 7.255520 GCTAGGCAGTTAAAGATAGTAGCTGTA 60.256 40.741 0.00 0.00 33.65 2.74
3672 4409 5.961396 ATTGACGTACTATACAGGCTAGG 57.039 43.478 0.00 0.00 0.00 3.02
3673 4410 8.495361 AGATATTGACGTACTATACAGGCTAG 57.505 38.462 0.00 0.00 0.00 3.42
3674 4411 8.859236 AAGATATTGACGTACTATACAGGCTA 57.141 34.615 0.00 0.00 0.00 3.93
3688 4425 5.088739 GTGCAGAACCAAAAGATATTGACG 58.911 41.667 0.00 0.00 31.84 4.35
3824 4561 7.275560 AGTTCAGCGGCAAAATCAAATATTTAC 59.724 33.333 1.45 0.00 0.00 2.01
3848 4585 7.547370 GCACATTACTTCTAAAGAGTGATCAGT 59.453 37.037 1.67 1.67 0.00 3.41
3984 4722 3.004524 CGTTGTACCTAGGCCTATCTGAC 59.995 52.174 14.30 9.81 0.00 3.51
4058 4796 0.385751 TGATCTTCGATCGAGCACCC 59.614 55.000 18.54 8.50 0.00 4.61
4069 4807 5.506317 GCCAGGGATTGTTATTTGATCTTCG 60.506 44.000 0.00 0.00 0.00 3.79
4093 4834 2.038033 TCAGTTTACCCTGAGGAAACCG 59.962 50.000 11.02 3.21 36.57 4.44
4101 4842 7.466804 ACATTTATCCTTTCAGTTTACCCTGA 58.533 34.615 0.00 0.00 39.65 3.86
4125 4866 7.212976 TGCACTTCTTCTATTCCATAGATGAC 58.787 38.462 8.25 1.07 42.33 3.06
4146 4887 1.811965 TGGCATACAGTGAACATGCAC 59.188 47.619 21.75 14.98 45.45 4.57
4247 4988 5.273170 ACGATAACGATGCAATTCCAAATG 58.727 37.500 0.00 0.00 42.66 2.32
4274 5015 1.944177 AGGGCACATGACTGTAGAGT 58.056 50.000 0.00 0.00 33.14 3.24
4307 5048 6.824305 ACAAACATAGCAGTTTATTCAGCT 57.176 33.333 2.31 0.00 39.55 4.24
4345 5086 9.185192 GGTGAACAAGATTGACAGAAAATTTAG 57.815 33.333 0.00 0.00 0.00 1.85
4452 5193 1.869132 CCGCTCCATACATGACACATG 59.131 52.381 0.00 9.72 0.00 3.21
4453 5194 1.762370 TCCGCTCCATACATGACACAT 59.238 47.619 0.00 0.00 0.00 3.21
4470 5211 2.205022 ACAATGCCCATATCCATCCG 57.795 50.000 0.00 0.00 0.00 4.18
4478 5219 4.092279 TCCACAATTCAACAATGCCCATA 58.908 39.130 0.00 0.00 0.00 2.74
4502 5243 7.928873 TGGAACTTCCTTAAATAATCCTCTGT 58.071 34.615 9.31 0.00 37.46 3.41
4509 5250 8.646900 TGTTTGCTTGGAACTTCCTTAAATAAT 58.353 29.630 9.31 0.00 37.46 1.28
4630 5372 7.027760 TGAAGAGTTTTAGTCTGTGCGTATAG 58.972 38.462 0.00 0.00 0.00 1.31
4632 5374 5.779922 TGAAGAGTTTTAGTCTGTGCGTAT 58.220 37.500 0.00 0.00 0.00 3.06
4665 5411 5.454966 TCTTCCTGATACAGCATACACCTA 58.545 41.667 0.00 0.00 0.00 3.08
4713 5459 2.614057 CCGTGGGTGCTATGAATTCTTC 59.386 50.000 7.05 0.00 0.00 2.87
4744 5490 4.586421 TGTGTTCATGAAAGGGTTATGCAA 59.414 37.500 10.35 0.00 0.00 4.08
4745 5491 4.148079 TGTGTTCATGAAAGGGTTATGCA 58.852 39.130 10.35 0.00 0.00 3.96
4762 5508 8.225603 AGAACTCTTGTGTATGAATTTGTGTT 57.774 30.769 0.00 0.00 0.00 3.32
4781 5545 9.575783 AATTTCACTAGATTCTTACGAGAACTC 57.424 33.333 0.00 0.00 44.27 3.01
4788 5552 9.959775 GTTGAAGAATTTCACTAGATTCTTACG 57.040 33.333 14.05 0.00 46.85 3.18
4794 5558 6.887002 GGGGAGTTGAAGAATTTCACTAGATT 59.113 38.462 0.00 0.00 42.79 2.40
4822 5586 3.192212 CACTTGCCTGGGAGATTTTTCTC 59.808 47.826 0.00 0.00 36.08 2.87
4834 5598 3.940209 TTTATTGCTTCACTTGCCTGG 57.060 42.857 0.00 0.00 0.00 4.45
4983 5747 1.291132 CCTTAGCTTAACTGCCGCTC 58.709 55.000 0.00 0.00 35.33 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.