Multiple sequence alignment - TraesCS7D01G044600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G044600 chr7D 100.000 2997 0 0 1 2997 22632352 22629356 0.000000e+00 5535.0
1 TraesCS7D01G044600 chr7D 100.000 102 0 0 3207 3308 22629146 22629045 4.360000e-44 189.0
2 TraesCS7D01G044600 chr7D 95.000 80 4 0 473 552 589261191 589261112 3.470000e-25 126.0
3 TraesCS7D01G044600 chr7D 91.379 58 5 0 3250 3307 610238186 610238129 2.740000e-11 80.5
4 TraesCS7D01G044600 chr7A 91.310 2221 106 32 693 2880 22982953 22980787 0.000000e+00 2952.0
5 TraesCS7D01G044600 chr4A 91.541 2128 111 33 763 2852 705632439 705634535 0.000000e+00 2868.0
6 TraesCS7D01G044600 chr4A 85.507 345 29 7 52 376 705631787 705632130 1.140000e-89 340.0
7 TraesCS7D01G044600 chr4A 94.737 57 3 0 3251 3307 707877977 707877921 4.550000e-14 89.8
8 TraesCS7D01G044600 chr1B 95.062 81 3 1 473 552 633725421 633725341 3.470000e-25 126.0
9 TraesCS7D01G044600 chr2B 94.643 56 3 0 3251 3306 381524818 381524763 1.640000e-13 87.9
10 TraesCS7D01G044600 chr6D 91.525 59 3 2 3250 3307 455895783 455895726 2.740000e-11 80.5
11 TraesCS7D01G044600 chr3D 94.000 50 3 0 3258 3307 39018047 39018096 3.540000e-10 76.8
12 TraesCS7D01G044600 chr7B 87.273 55 4 2 3247 3300 663201521 663201573 3.560000e-05 60.2
13 TraesCS7D01G044600 chr7B 96.774 31 1 0 3270 3300 123404634 123404604 6.000000e-03 52.8
14 TraesCS7D01G044600 chr2D 94.595 37 2 0 3264 3300 562302503 562302539 1.280000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G044600 chr7D 22629045 22632352 3307 True 2862 5535 100.000 1 3308 2 chr7D.!!$R3 3307
1 TraesCS7D01G044600 chr7A 22980787 22982953 2166 True 2952 2952 91.310 693 2880 1 chr7A.!!$R1 2187
2 TraesCS7D01G044600 chr4A 705631787 705634535 2748 False 1604 2868 88.524 52 2852 2 chr4A.!!$F1 2800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 188 0.037590 CGGGGTCTGTTTGGATGGAA 59.962 55.0 0.0 0.0 0.0 3.53 F
258 278 0.255033 GAGATAACCAAACGGCCCCT 59.745 55.0 0.0 0.0 0.0 4.79 F
363 384 0.839946 AGCTTGCTATCCGGGACAAT 59.160 50.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 2208 0.683412 CCGGCAGGATGATCATGAGA 59.317 55.000 14.3 0.00 39.69 3.27 R
2145 2295 1.153086 GGTGTAGCTGGCCATGGAG 60.153 63.158 18.4 5.92 0.00 3.86 R
2317 2467 4.884164 CAGGGGATGATGATGATGATGATG 59.116 45.833 0.0 0.00 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.449528 TGCATCATCCTCTCTTCTTCG 57.550 47.619 0.00 0.00 0.00 3.79
21 22 2.102084 TGCATCATCCTCTCTTCTTCGG 59.898 50.000 0.00 0.00 0.00 4.30
22 23 2.547642 GCATCATCCTCTCTTCTTCGGG 60.548 54.545 0.00 0.00 0.00 5.14
23 24 1.115467 TCATCCTCTCTTCTTCGGGC 58.885 55.000 0.00 0.00 0.00 6.13
24 25 0.826715 CATCCTCTCTTCTTCGGGCA 59.173 55.000 0.00 0.00 0.00 5.36
25 26 1.208052 CATCCTCTCTTCTTCGGGCAA 59.792 52.381 0.00 0.00 0.00 4.52
26 27 1.348064 TCCTCTCTTCTTCGGGCAAA 58.652 50.000 0.00 0.00 0.00 3.68
27 28 1.697432 TCCTCTCTTCTTCGGGCAAAA 59.303 47.619 0.00 0.00 0.00 2.44
28 29 2.305927 TCCTCTCTTCTTCGGGCAAAAT 59.694 45.455 0.00 0.00 0.00 1.82
29 30 3.517901 TCCTCTCTTCTTCGGGCAAAATA 59.482 43.478 0.00 0.00 0.00 1.40
30 31 3.623510 CCTCTCTTCTTCGGGCAAAATAC 59.376 47.826 0.00 0.00 0.00 1.89
31 32 3.606687 TCTCTTCTTCGGGCAAAATACC 58.393 45.455 0.00 0.00 0.00 2.73
32 33 3.008594 TCTCTTCTTCGGGCAAAATACCA 59.991 43.478 0.00 0.00 0.00 3.25
33 34 3.756434 CTCTTCTTCGGGCAAAATACCAA 59.244 43.478 0.00 0.00 0.00 3.67
34 35 3.504520 TCTTCTTCGGGCAAAATACCAAC 59.495 43.478 0.00 0.00 0.00 3.77
35 36 1.807742 TCTTCGGGCAAAATACCAACG 59.192 47.619 0.00 0.00 0.00 4.10
36 37 0.241481 TTCGGGCAAAATACCAACGC 59.759 50.000 0.00 0.00 0.00 4.84
37 38 0.889638 TCGGGCAAAATACCAACGCA 60.890 50.000 0.00 0.00 0.00 5.24
38 39 0.039074 CGGGCAAAATACCAACGCAA 60.039 50.000 0.00 0.00 0.00 4.85
39 40 1.424403 GGGCAAAATACCAACGCAAC 58.576 50.000 0.00 0.00 0.00 4.17
40 41 1.000394 GGGCAAAATACCAACGCAACT 60.000 47.619 0.00 0.00 0.00 3.16
41 42 2.324860 GGCAAAATACCAACGCAACTC 58.675 47.619 0.00 0.00 0.00 3.01
42 43 2.287909 GGCAAAATACCAACGCAACTCA 60.288 45.455 0.00 0.00 0.00 3.41
43 44 2.724174 GCAAAATACCAACGCAACTCAC 59.276 45.455 0.00 0.00 0.00 3.51
44 45 3.793801 GCAAAATACCAACGCAACTCACA 60.794 43.478 0.00 0.00 0.00 3.58
45 46 4.355437 CAAAATACCAACGCAACTCACAA 58.645 39.130 0.00 0.00 0.00 3.33
46 47 4.640789 AAATACCAACGCAACTCACAAA 57.359 36.364 0.00 0.00 0.00 2.83
47 48 4.846779 AATACCAACGCAACTCACAAAT 57.153 36.364 0.00 0.00 0.00 2.32
48 49 5.950758 AATACCAACGCAACTCACAAATA 57.049 34.783 0.00 0.00 0.00 1.40
49 50 3.896648 ACCAACGCAACTCACAAATAG 57.103 42.857 0.00 0.00 0.00 1.73
50 51 2.031157 ACCAACGCAACTCACAAATAGC 60.031 45.455 0.00 0.00 0.00 2.97
51 52 2.031245 CCAACGCAACTCACAAATAGCA 60.031 45.455 0.00 0.00 0.00 3.49
52 53 3.549827 CCAACGCAACTCACAAATAGCAA 60.550 43.478 0.00 0.00 0.00 3.91
53 54 3.980646 ACGCAACTCACAAATAGCAAA 57.019 38.095 0.00 0.00 0.00 3.68
54 55 3.888934 ACGCAACTCACAAATAGCAAAG 58.111 40.909 0.00 0.00 0.00 2.77
55 56 3.315191 ACGCAACTCACAAATAGCAAAGT 59.685 39.130 0.00 0.00 0.00 2.66
56 57 3.665409 CGCAACTCACAAATAGCAAAGTG 59.335 43.478 0.00 0.00 0.00 3.16
57 58 3.426525 GCAACTCACAAATAGCAAAGTGC 59.573 43.478 0.00 0.00 45.46 4.40
58 59 3.923017 ACTCACAAATAGCAAAGTGCC 57.077 42.857 0.00 0.00 46.52 5.01
59 60 3.221771 ACTCACAAATAGCAAAGTGCCA 58.778 40.909 0.00 0.00 46.52 4.92
60 61 3.828451 ACTCACAAATAGCAAAGTGCCAT 59.172 39.130 0.00 0.00 46.52 4.40
61 62 4.281688 ACTCACAAATAGCAAAGTGCCATT 59.718 37.500 0.00 0.00 46.52 3.16
62 63 5.212532 TCACAAATAGCAAAGTGCCATTT 57.787 34.783 1.51 1.51 43.49 2.32
85 86 9.765795 ATTTGATATACTTGTACTTCACCTAGC 57.234 33.333 0.00 0.00 0.00 3.42
102 103 1.750399 GCCGCTTCATGGTGGTCAT 60.750 57.895 3.87 0.00 38.94 3.06
149 150 2.608546 TGCATCTTGTTTTTGCTTGTGC 59.391 40.909 0.00 0.00 37.28 4.57
164 183 3.172106 TGCCGGGGTCTGTTTGGA 61.172 61.111 2.18 0.00 0.00 3.53
169 188 0.037590 CGGGGTCTGTTTGGATGGAA 59.962 55.000 0.00 0.00 0.00 3.53
202 221 0.887387 GGCAACCAGTTTGTCCGCTA 60.887 55.000 0.00 0.00 37.54 4.26
219 238 3.081061 CGCTAATAATTGGCATGCCCTA 58.919 45.455 33.44 21.69 36.91 3.53
258 278 0.255033 GAGATAACCAAACGGCCCCT 59.745 55.000 0.00 0.00 0.00 4.79
261 281 2.158667 AGATAACCAAACGGCCCCTATG 60.159 50.000 0.00 0.00 0.00 2.23
268 288 2.003937 AACGGCCCCTATGTGTTTTT 57.996 45.000 0.00 0.00 0.00 1.94
272 292 2.360801 CGGCCCCTATGTGTTTTTATGG 59.639 50.000 0.00 0.00 0.00 2.74
282 302 7.975616 CCTATGTGTTTTTATGGAACTGGATTG 59.024 37.037 0.00 0.00 0.00 2.67
304 324 3.165606 GCACCTTGCAGCATCTAGT 57.834 52.632 0.00 0.00 44.26 2.57
314 334 2.938756 GCAGCATCTAGTGAGCAAACCT 60.939 50.000 6.59 0.00 32.63 3.50
317 337 2.675348 GCATCTAGTGAGCAAACCTGTC 59.325 50.000 0.00 0.00 0.00 3.51
322 343 2.359975 GAGCAAACCTGTCGGGGG 60.360 66.667 1.89 0.00 40.03 5.40
325 346 2.351276 CAAACCTGTCGGGGGAGG 59.649 66.667 1.89 0.00 40.03 4.30
343 364 1.589803 GGGACAATATTTCCCGTCGG 58.410 55.000 15.58 3.60 43.62 4.79
347 368 1.485066 ACAATATTTCCCGTCGGAGCT 59.515 47.619 14.39 0.00 40.10 4.09
353 374 1.327690 TTCCCGTCGGAGCTTGCTAT 61.328 55.000 14.39 0.00 40.10 2.97
363 384 0.839946 AGCTTGCTATCCGGGACAAT 59.160 50.000 0.00 0.00 0.00 2.71
376 397 4.703093 TCCGGGACAATAGAAAATGAAACC 59.297 41.667 0.00 0.00 0.00 3.27
390 511 8.591072 AGAAAATGAAACCACATCTTCATGAAT 58.409 29.630 8.96 0.00 40.54 2.57
393 514 6.653526 TGAAACCACATCTTCATGAATTGT 57.346 33.333 8.96 12.73 33.72 2.71
396 517 4.665451 ACCACATCTTCATGAATTGTGGA 58.335 39.130 42.06 26.41 46.49 4.02
397 518 4.460382 ACCACATCTTCATGAATTGTGGAC 59.540 41.667 42.06 0.00 46.49 4.02
399 520 5.126545 CCACATCTTCATGAATTGTGGACAT 59.873 40.000 37.92 14.89 46.49 3.06
413 534 4.018490 TGTGGACATTCATAAGCAGCAAT 58.982 39.130 0.00 0.00 0.00 3.56
416 537 6.321945 TGTGGACATTCATAAGCAGCAATAAT 59.678 34.615 0.00 0.00 0.00 1.28
419 540 8.517056 TGGACATTCATAAGCAGCAATAATATG 58.483 33.333 0.00 0.00 0.00 1.78
427 548 9.911980 CATAAGCAGCAATAATATGATTCGTAG 57.088 33.333 0.00 0.00 0.00 3.51
454 575 4.201990 GCCTTCCAGATACAAATTGCAGAG 60.202 45.833 0.00 0.00 0.00 3.35
473 594 5.065602 GCAGAGTGCTCATGTGAAATAATCA 59.934 40.000 0.00 0.00 40.96 2.57
474 595 6.238676 GCAGAGTGCTCATGTGAAATAATCAT 60.239 38.462 0.00 0.00 39.42 2.45
476 597 6.485984 AGAGTGCTCATGTGAAATAATCATCC 59.514 38.462 0.00 0.00 40.97 3.51
478 599 6.604396 AGTGCTCATGTGAAATAATCATCCAA 59.396 34.615 0.00 0.00 40.97 3.53
481 602 8.479689 TGCTCATGTGAAATAATCATCCAAAAT 58.520 29.630 0.00 0.00 40.97 1.82
482 603 8.975439 GCTCATGTGAAATAATCATCCAAAATC 58.025 33.333 0.00 0.00 40.97 2.17
483 604 9.177304 CTCATGTGAAATAATCATCCAAAATCG 57.823 33.333 0.00 0.00 40.97 3.34
484 605 8.685427 TCATGTGAAATAATCATCCAAAATCGT 58.315 29.630 0.00 0.00 40.97 3.73
485 606 9.304731 CATGTGAAATAATCATCCAAAATCGTT 57.695 29.630 0.00 0.00 40.97 3.85
486 607 8.686397 TGTGAAATAATCATCCAAAATCGTTG 57.314 30.769 0.00 0.00 40.97 4.10
487 608 8.303156 TGTGAAATAATCATCCAAAATCGTTGT 58.697 29.630 0.00 0.00 40.97 3.32
488 609 9.781834 GTGAAATAATCATCCAAAATCGTTGTA 57.218 29.630 0.00 0.00 40.97 2.41
492 613 6.436843 AATCATCCAAAATCGTTGTAGACC 57.563 37.500 0.00 0.00 0.00 3.85
493 614 4.258543 TCATCCAAAATCGTTGTAGACCC 58.741 43.478 0.00 0.00 0.00 4.46
494 615 3.773418 TCCAAAATCGTTGTAGACCCA 57.227 42.857 0.00 0.00 0.00 4.51
495 616 4.088056 TCCAAAATCGTTGTAGACCCAA 57.912 40.909 0.00 0.00 0.00 4.12
496 617 4.069304 TCCAAAATCGTTGTAGACCCAAG 58.931 43.478 0.00 0.00 0.00 3.61
497 618 3.190535 CCAAAATCGTTGTAGACCCAAGG 59.809 47.826 0.00 0.00 0.00 3.61
498 619 4.069304 CAAAATCGTTGTAGACCCAAGGA 58.931 43.478 0.00 0.00 41.72 3.36
499 620 4.360951 AAATCGTTGTAGACCCAAGGAA 57.639 40.909 0.00 0.00 41.09 3.36
500 621 4.569719 AATCGTTGTAGACCCAAGGAAT 57.430 40.909 0.00 0.00 41.09 3.01
501 622 4.569719 ATCGTTGTAGACCCAAGGAATT 57.430 40.909 0.00 0.00 41.09 2.17
502 623 5.687166 ATCGTTGTAGACCCAAGGAATTA 57.313 39.130 0.00 0.00 41.09 1.40
503 624 4.824289 TCGTTGTAGACCCAAGGAATTAC 58.176 43.478 0.00 0.00 36.57 1.89
504 625 4.529377 TCGTTGTAGACCCAAGGAATTACT 59.471 41.667 0.00 0.00 36.57 2.24
505 626 5.716228 TCGTTGTAGACCCAAGGAATTACTA 59.284 40.000 0.00 0.00 36.57 1.82
506 627 6.381994 TCGTTGTAGACCCAAGGAATTACTAT 59.618 38.462 0.00 0.00 36.57 2.12
507 628 7.046033 CGTTGTAGACCCAAGGAATTACTATT 58.954 38.462 0.00 0.00 33.23 1.73
508 629 7.551617 CGTTGTAGACCCAAGGAATTACTATTT 59.448 37.037 0.00 0.00 33.23 1.40
509 630 8.890718 GTTGTAGACCCAAGGAATTACTATTTC 58.109 37.037 0.00 0.00 0.00 2.17
510 631 7.571025 TGTAGACCCAAGGAATTACTATTTCC 58.429 38.462 0.00 2.58 42.51 3.13
511 632 6.014771 AGACCCAAGGAATTACTATTTCCC 57.985 41.667 0.00 0.00 43.08 3.97
512 633 5.494706 AGACCCAAGGAATTACTATTTCCCA 59.505 40.000 0.00 0.00 43.08 4.37
513 634 6.011096 AGACCCAAGGAATTACTATTTCCCAA 60.011 38.462 0.00 0.00 43.08 4.12
514 635 5.955959 ACCCAAGGAATTACTATTTCCCAAC 59.044 40.000 0.00 0.00 43.08 3.77
515 636 5.362717 CCCAAGGAATTACTATTTCCCAACC 59.637 44.000 0.00 0.00 43.08 3.77
516 637 5.955355 CCAAGGAATTACTATTTCCCAACCA 59.045 40.000 0.00 0.00 43.08 3.67
517 638 6.611236 CCAAGGAATTACTATTTCCCAACCAT 59.389 38.462 0.00 0.00 43.08 3.55
518 639 7.417797 CCAAGGAATTACTATTTCCCAACCATG 60.418 40.741 0.00 0.00 43.08 3.66
519 640 6.136155 AGGAATTACTATTTCCCAACCATGG 58.864 40.000 11.19 11.19 43.08 3.66
568 689 6.961576 TGAGTAACATTTTTCAACCGGTTAG 58.038 36.000 21.79 14.54 0.00 2.34
575 696 0.878416 TTCAACCGGTTAGCATGCAC 59.122 50.000 21.79 10.23 0.00 4.57
583 704 4.038162 ACCGGTTAGCATGCACTTTTAAAA 59.962 37.500 21.98 0.00 0.00 1.52
584 705 4.985409 CCGGTTAGCATGCACTTTTAAAAA 59.015 37.500 21.98 0.00 0.00 1.94
623 744 7.088589 ACATTGCACAAACTAATATGGACTC 57.911 36.000 0.00 0.00 0.00 3.36
624 745 6.886459 ACATTGCACAAACTAATATGGACTCT 59.114 34.615 0.00 0.00 0.00 3.24
625 746 7.394359 ACATTGCACAAACTAATATGGACTCTT 59.606 33.333 0.00 0.00 0.00 2.85
628 749 8.177119 TGCACAAACTAATATGGACTCTTTTT 57.823 30.769 0.00 0.00 0.00 1.94
677 798 8.903059 TTTATGGGTATAAATGGACCTTTTGT 57.097 30.769 14.13 10.57 34.64 2.83
678 799 8.903059 TTATGGGTATAAATGGACCTTTTGTT 57.097 30.769 14.13 5.75 35.91 2.83
679 800 7.806680 ATGGGTATAAATGGACCTTTTGTTT 57.193 32.000 14.13 3.72 35.91 2.83
680 801 7.619512 TGGGTATAAATGGACCTTTTGTTTT 57.380 32.000 14.13 1.72 35.91 2.43
681 802 7.672240 TGGGTATAAATGGACCTTTTGTTTTC 58.328 34.615 14.13 3.97 35.91 2.29
682 803 7.511028 TGGGTATAAATGGACCTTTTGTTTTCT 59.489 33.333 14.13 0.00 35.91 2.52
683 804 8.372459 GGGTATAAATGGACCTTTTGTTTTCTT 58.628 33.333 14.13 0.00 35.91 2.52
687 808 6.478512 AATGGACCTTTTGTTTTCTTAGCA 57.521 33.333 0.00 0.00 0.00 3.49
688 809 5.923733 TGGACCTTTTGTTTTCTTAGCAA 57.076 34.783 0.00 0.00 0.00 3.91
689 810 5.656480 TGGACCTTTTGTTTTCTTAGCAAC 58.344 37.500 0.00 0.00 0.00 4.17
690 811 5.186021 TGGACCTTTTGTTTTCTTAGCAACA 59.814 36.000 0.00 0.00 0.00 3.33
691 812 6.127196 TGGACCTTTTGTTTTCTTAGCAACAT 60.127 34.615 0.00 0.00 32.96 2.71
781 902 7.830739 AGCCATTATGGACTTTTTGTTAGAAG 58.169 34.615 16.46 0.00 40.96 2.85
782 903 7.035612 GCCATTATGGACTTTTTGTTAGAAGG 58.964 38.462 16.46 0.00 40.96 3.46
783 904 7.309805 GCCATTATGGACTTTTTGTTAGAAGGT 60.310 37.037 16.46 0.00 40.96 3.50
784 905 8.244113 CCATTATGGACTTTTTGTTAGAAGGTC 58.756 37.037 5.05 0.00 40.96 3.85
785 906 9.014297 CATTATGGACTTTTTGTTAGAAGGTCT 57.986 33.333 0.00 0.00 0.00 3.85
791 913 9.894783 GGACTTTTTGTTAGAAGGTCTTATTTC 57.105 33.333 0.00 0.00 0.00 2.17
796 918 6.697641 TGTTAGAAGGTCTTATTTCCCTGT 57.302 37.500 0.00 0.00 0.00 4.00
797 919 6.708285 TGTTAGAAGGTCTTATTTCCCTGTC 58.292 40.000 0.00 0.00 0.00 3.51
815 937 3.287222 TGTCCCACAAAGAAGAAACTGG 58.713 45.455 0.00 0.00 0.00 4.00
865 987 1.055849 TCTCAGCCCAGCAACAGTTA 58.944 50.000 0.00 0.00 0.00 2.24
876 1000 1.933853 GCAACAGTTAGACATAGCCGG 59.066 52.381 0.00 0.00 0.00 6.13
994 1124 2.281761 AAACCCCAGCACGAGCAG 60.282 61.111 7.77 0.00 45.49 4.24
1302 1441 4.295119 GCCACCGGAGTCACACGT 62.295 66.667 9.46 0.00 0.00 4.49
1337 1476 4.631247 TGCGCCAGTGCTCTGCTT 62.631 61.111 4.18 0.00 40.09 3.91
1351 1495 3.366781 GCTCTGCTTTGTTCCCTTCATTC 60.367 47.826 0.00 0.00 0.00 2.67
1442 1586 3.547054 TTACGTTCTTGCCGGGAATAT 57.453 42.857 9.53 0.00 0.00 1.28
1455 1599 2.325583 GGAATATTCCACAGGTCGCA 57.674 50.000 26.61 0.00 46.76 5.10
2046 2196 4.778143 GGGATCGTGCACGGCCTT 62.778 66.667 36.41 20.01 40.29 4.35
2314 2464 2.802816 GTGAGCTTGTACTGAACCACTG 59.197 50.000 0.00 0.00 0.00 3.66
2315 2465 2.698274 TGAGCTTGTACTGAACCACTGA 59.302 45.455 0.00 0.00 0.00 3.41
2317 2467 3.929610 GAGCTTGTACTGAACCACTGATC 59.070 47.826 0.00 0.00 0.00 2.92
2409 2580 4.677779 GCCATGGAAATTTTGCTACGTCAT 60.678 41.667 18.40 0.00 0.00 3.06
2411 2582 3.832276 TGGAAATTTTGCTACGTCATGC 58.168 40.909 0.00 0.00 0.00 4.06
2475 2646 8.722394 AGTTTACGATTCAAGAAAGGAAATCTC 58.278 33.333 0.00 0.00 0.00 2.75
2586 2758 1.401905 CTTTACTTGAGCGATTGGCCC 59.598 52.381 0.00 0.00 45.17 5.80
2595 2767 0.029433 GCGATTGGCCCGAAGAAATC 59.971 55.000 0.00 0.09 34.80 2.17
2596 2768 1.378531 CGATTGGCCCGAAGAAATCA 58.621 50.000 0.00 0.00 0.00 2.57
2631 2803 4.082787 CGTTTCCTATTGTGATGGTTGCTT 60.083 41.667 0.00 0.00 0.00 3.91
2695 2870 3.057526 GGACCAACCTTAGCACATTGTTC 60.058 47.826 0.00 0.00 35.41 3.18
2712 2887 2.269172 GTTCCTGAACGTAGCCTTAGC 58.731 52.381 0.00 0.00 40.32 3.09
2714 2889 6.072650 TGTTCCTGAACGTAGCCTTAGCTT 62.073 45.833 0.00 0.00 45.31 3.74
2715 2890 7.797233 TGTTCCTGAACGTAGCCTTAGCTTC 62.797 48.000 0.00 0.00 45.31 3.86
2788 2963 4.321718 TGCTTCATTTCTCTTGTCTCTGG 58.678 43.478 0.00 0.00 0.00 3.86
2799 2974 3.006537 TCTTGTCTCTGGTACGAAAAGGG 59.993 47.826 0.00 0.00 0.00 3.95
2800 2975 2.600790 TGTCTCTGGTACGAAAAGGGA 58.399 47.619 0.00 0.00 0.00 4.20
2801 2976 2.561419 TGTCTCTGGTACGAAAAGGGAG 59.439 50.000 0.00 0.00 0.00 4.30
2802 2977 1.549170 TCTCTGGTACGAAAAGGGAGC 59.451 52.381 0.00 0.00 0.00 4.70
2822 2997 0.875059 GAGAAAGGCTTGGTGGAACG 59.125 55.000 0.00 0.00 38.12 3.95
2855 3031 6.092259 GGCAGAGTTAAAATTCGTACAGATGT 59.908 38.462 0.00 0.00 0.00 3.06
2862 3038 9.988350 GTTAAAATTCGTACAGATGTCATGATT 57.012 29.630 0.00 0.00 0.00 2.57
2871 3047 7.542477 CGTACAGATGTCATGATTTATACTCCC 59.458 40.741 0.00 0.00 0.00 4.30
2872 3048 7.623999 ACAGATGTCATGATTTATACTCCCT 57.376 36.000 0.00 0.00 0.00 4.20
2875 3051 5.468540 TGTCATGATTTATACTCCCTCCG 57.531 43.478 0.00 0.00 0.00 4.63
2880 3056 4.543689 TGATTTATACTCCCTCCGTCACT 58.456 43.478 0.00 0.00 0.00 3.41
2881 3057 4.960469 TGATTTATACTCCCTCCGTCACTT 59.040 41.667 0.00 0.00 0.00 3.16
2882 3058 5.424252 TGATTTATACTCCCTCCGTCACTTT 59.576 40.000 0.00 0.00 0.00 2.66
2883 3059 5.750352 TTTATACTCCCTCCGTCACTTTT 57.250 39.130 0.00 0.00 0.00 2.27
2884 3060 5.750352 TTATACTCCCTCCGTCACTTTTT 57.250 39.130 0.00 0.00 0.00 1.94
2885 3061 6.855763 TTATACTCCCTCCGTCACTTTTTA 57.144 37.500 0.00 0.00 0.00 1.52
2886 3062 5.952347 ATACTCCCTCCGTCACTTTTTAT 57.048 39.130 0.00 0.00 0.00 1.40
2887 3063 8.537728 TTATACTCCCTCCGTCACTTTTTATA 57.462 34.615 0.00 0.00 0.00 0.98
2888 3064 5.750352 ACTCCCTCCGTCACTTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
2889 3065 5.731591 ACTCCCTCCGTCACTTTTTATAAG 58.268 41.667 0.00 0.00 0.00 1.73
2890 3066 4.510571 TCCCTCCGTCACTTTTTATAAGC 58.489 43.478 0.00 0.00 0.00 3.09
2891 3067 4.020039 TCCCTCCGTCACTTTTTATAAGCA 60.020 41.667 0.00 0.00 0.00 3.91
2892 3068 4.881850 CCCTCCGTCACTTTTTATAAGCAT 59.118 41.667 0.00 0.00 0.00 3.79
2893 3069 5.357032 CCCTCCGTCACTTTTTATAAGCATT 59.643 40.000 0.00 0.00 0.00 3.56
2894 3070 6.540914 CCCTCCGTCACTTTTTATAAGCATTA 59.459 38.462 0.00 0.00 33.48 1.90
2895 3071 7.066525 CCCTCCGTCACTTTTTATAAGCATTAA 59.933 37.037 0.00 0.00 32.17 1.40
2896 3072 8.621286 CCTCCGTCACTTTTTATAAGCATTAAT 58.379 33.333 0.00 0.00 32.17 1.40
2897 3073 9.438291 CTCCGTCACTTTTTATAAGCATTAATG 57.562 33.333 11.27 11.27 32.17 1.90
2898 3074 8.952278 TCCGTCACTTTTTATAAGCATTAATGT 58.048 29.630 16.61 0.70 32.17 2.71
2899 3075 9.567848 CCGTCACTTTTTATAAGCATTAATGTT 57.432 29.630 16.61 8.18 32.17 2.71
2904 3080 9.869757 ACTTTTTATAAGCATTAATGTTGGACC 57.130 29.630 16.61 0.00 32.17 4.46
2907 3083 9.868277 TTTTATAAGCATTAATGTTGGACCTTG 57.132 29.630 16.61 0.00 32.17 3.61
2908 3084 8.815565 TTATAAGCATTAATGTTGGACCTTGA 57.184 30.769 16.61 1.80 32.17 3.02
2909 3085 7.902920 ATAAGCATTAATGTTGGACCTTGAT 57.097 32.000 16.61 0.00 32.17 2.57
2910 3086 8.995027 ATAAGCATTAATGTTGGACCTTGATA 57.005 30.769 16.61 0.00 32.17 2.15
2911 3087 7.716799 AAGCATTAATGTTGGACCTTGATAA 57.283 32.000 16.61 0.00 0.00 1.75
2912 3088 7.338800 AGCATTAATGTTGGACCTTGATAAG 57.661 36.000 16.61 0.00 0.00 1.73
2913 3089 6.891908 AGCATTAATGTTGGACCTTGATAAGT 59.108 34.615 16.61 0.00 0.00 2.24
2914 3090 6.974622 GCATTAATGTTGGACCTTGATAAGTG 59.025 38.462 16.61 0.00 0.00 3.16
2915 3091 7.148086 GCATTAATGTTGGACCTTGATAAGTGA 60.148 37.037 16.61 0.00 0.00 3.41
2916 3092 7.681939 TTAATGTTGGACCTTGATAAGTGAC 57.318 36.000 0.00 0.00 0.00 3.67
2917 3093 4.698201 TGTTGGACCTTGATAAGTGACA 57.302 40.909 0.00 0.00 0.00 3.58
2918 3094 5.241403 TGTTGGACCTTGATAAGTGACAT 57.759 39.130 0.00 0.00 0.00 3.06
2919 3095 6.367374 TGTTGGACCTTGATAAGTGACATA 57.633 37.500 0.00 0.00 0.00 2.29
2920 3096 6.170506 TGTTGGACCTTGATAAGTGACATAC 58.829 40.000 0.00 0.00 0.00 2.39
2921 3097 5.006153 TGGACCTTGATAAGTGACATACG 57.994 43.478 0.00 0.00 0.00 3.06
2922 3098 4.464951 TGGACCTTGATAAGTGACATACGT 59.535 41.667 0.00 0.00 0.00 3.57
2923 3099 4.804139 GGACCTTGATAAGTGACATACGTG 59.196 45.833 0.00 0.00 0.00 4.49
2924 3100 5.401531 ACCTTGATAAGTGACATACGTGT 57.598 39.130 0.00 0.00 42.49 4.49
2925 3101 5.168569 ACCTTGATAAGTGACATACGTGTG 58.831 41.667 11.09 11.09 39.09 3.82
2926 3102 5.047590 ACCTTGATAAGTGACATACGTGTGA 60.048 40.000 19.87 0.00 39.09 3.58
2927 3103 5.288712 CCTTGATAAGTGACATACGTGTGAC 59.711 44.000 19.87 13.48 41.98 3.67
2928 3104 5.379732 TGATAAGTGACATACGTGTGACA 57.620 39.130 19.87 16.11 43.78 3.58
2929 3105 5.158494 TGATAAGTGACATACGTGTGACAC 58.842 41.667 29.83 29.83 43.78 3.67
2941 3117 3.515071 GTGTGACACGGTTGACAATAC 57.485 47.619 0.00 0.00 0.00 1.89
2942 3118 3.128349 GTGTGACACGGTTGACAATACT 58.872 45.455 0.00 0.00 0.00 2.12
2943 3119 4.300803 GTGTGACACGGTTGACAATACTA 58.699 43.478 0.00 0.00 0.00 1.82
2944 3120 4.384846 GTGTGACACGGTTGACAATACTAG 59.615 45.833 0.00 0.00 0.00 2.57
2945 3121 4.278919 TGTGACACGGTTGACAATACTAGA 59.721 41.667 0.00 0.00 0.00 2.43
2946 3122 5.221283 TGTGACACGGTTGACAATACTAGAA 60.221 40.000 0.00 0.00 0.00 2.10
2947 3123 5.118203 GTGACACGGTTGACAATACTAGAAC 59.882 44.000 0.00 0.00 0.00 3.01
2948 3124 5.010314 TGACACGGTTGACAATACTAGAACT 59.990 40.000 0.00 0.00 0.00 3.01
2949 3125 5.850614 ACACGGTTGACAATACTAGAACTT 58.149 37.500 0.00 0.00 0.00 2.66
2950 3126 5.924825 ACACGGTTGACAATACTAGAACTTC 59.075 40.000 0.00 0.00 0.00 3.01
2951 3127 5.347907 CACGGTTGACAATACTAGAACTTCC 59.652 44.000 0.00 0.00 0.00 3.46
2952 3128 4.868734 CGGTTGACAATACTAGAACTTCCC 59.131 45.833 0.00 0.00 0.00 3.97
2953 3129 5.337330 CGGTTGACAATACTAGAACTTCCCT 60.337 44.000 0.00 0.00 0.00 4.20
2954 3130 6.107343 GGTTGACAATACTAGAACTTCCCTC 58.893 44.000 0.00 0.00 0.00 4.30
2955 3131 5.578005 TGACAATACTAGAACTTCCCTCG 57.422 43.478 0.00 0.00 0.00 4.63
2956 3132 5.014858 TGACAATACTAGAACTTCCCTCGT 58.985 41.667 0.00 0.00 0.00 4.18
2957 3133 6.182627 TGACAATACTAGAACTTCCCTCGTA 58.817 40.000 0.00 0.00 0.00 3.43
2958 3134 6.318144 TGACAATACTAGAACTTCCCTCGTAG 59.682 42.308 0.00 0.00 0.00 3.51
2959 3135 5.593502 ACAATACTAGAACTTCCCTCGTAGG 59.406 44.000 0.00 0.00 34.30 3.18
2960 3136 2.377073 ACTAGAACTTCCCTCGTAGGC 58.623 52.381 0.00 0.00 32.73 3.93
2961 3137 2.291411 ACTAGAACTTCCCTCGTAGGCA 60.291 50.000 0.00 0.00 32.73 4.75
2962 3138 1.640917 AGAACTTCCCTCGTAGGCAA 58.359 50.000 0.00 0.00 32.73 4.52
2963 3139 1.975680 AGAACTTCCCTCGTAGGCAAA 59.024 47.619 0.00 0.00 32.73 3.68
2964 3140 2.370849 AGAACTTCCCTCGTAGGCAAAA 59.629 45.455 0.00 0.00 32.73 2.44
2965 3141 2.474410 ACTTCCCTCGTAGGCAAAAG 57.526 50.000 0.00 0.00 32.73 2.27
2966 3142 1.087501 CTTCCCTCGTAGGCAAAAGC 58.912 55.000 0.00 0.00 32.73 3.51
2967 3143 0.672401 TTCCCTCGTAGGCAAAAGCG 60.672 55.000 0.00 0.00 32.73 4.68
2968 3144 2.750888 CCCTCGTAGGCAAAAGCGC 61.751 63.158 0.00 0.00 32.73 5.92
2969 3145 2.032634 CCTCGTAGGCAAAAGCGCA 61.033 57.895 11.47 0.00 0.00 6.09
2970 3146 1.369091 CCTCGTAGGCAAAAGCGCAT 61.369 55.000 11.47 0.00 0.00 4.73
2971 3147 0.447801 CTCGTAGGCAAAAGCGCATT 59.552 50.000 11.47 0.00 0.00 3.56
2972 3148 1.663643 CTCGTAGGCAAAAGCGCATTA 59.336 47.619 11.47 0.00 0.00 1.90
2973 3149 2.077627 TCGTAGGCAAAAGCGCATTAA 58.922 42.857 11.47 0.00 0.00 1.40
2974 3150 2.680841 TCGTAGGCAAAAGCGCATTAAT 59.319 40.909 11.47 0.00 0.00 1.40
2975 3151 3.872182 TCGTAGGCAAAAGCGCATTAATA 59.128 39.130 11.47 0.00 0.00 0.98
2976 3152 4.025229 TCGTAGGCAAAAGCGCATTAATAG 60.025 41.667 11.47 0.00 0.00 1.73
2977 3153 4.025229 CGTAGGCAAAAGCGCATTAATAGA 60.025 41.667 11.47 0.00 0.00 1.98
2978 3154 4.981806 AGGCAAAAGCGCATTAATAGAA 57.018 36.364 11.47 0.00 0.00 2.10
2979 3155 5.323371 AGGCAAAAGCGCATTAATAGAAA 57.677 34.783 11.47 0.00 0.00 2.52
2980 3156 5.719173 AGGCAAAAGCGCATTAATAGAAAA 58.281 33.333 11.47 0.00 0.00 2.29
2981 3157 6.162777 AGGCAAAAGCGCATTAATAGAAAAA 58.837 32.000 11.47 0.00 0.00 1.94
2982 3158 6.090763 AGGCAAAAGCGCATTAATAGAAAAAC 59.909 34.615 11.47 0.00 0.00 2.43
2983 3159 6.128688 GGCAAAAGCGCATTAATAGAAAAACA 60.129 34.615 11.47 0.00 0.00 2.83
2984 3160 6.731948 GCAAAAGCGCATTAATAGAAAAACAC 59.268 34.615 11.47 0.00 0.00 3.32
2985 3161 6.611380 AAAGCGCATTAATAGAAAAACACG 57.389 33.333 11.47 0.00 0.00 4.49
2986 3162 4.658071 AGCGCATTAATAGAAAAACACGG 58.342 39.130 11.47 0.00 0.00 4.94
2987 3163 4.393680 AGCGCATTAATAGAAAAACACGGA 59.606 37.500 11.47 0.00 0.00 4.69
2988 3164 4.494410 GCGCATTAATAGAAAAACACGGAC 59.506 41.667 0.30 0.00 0.00 4.79
2989 3165 4.721977 CGCATTAATAGAAAAACACGGACG 59.278 41.667 0.00 0.00 0.00 4.79
2990 3166 4.494410 GCATTAATAGAAAAACACGGACGC 59.506 41.667 0.00 0.00 0.00 5.19
2991 3167 4.666928 TTAATAGAAAAACACGGACGCC 57.333 40.909 0.00 0.00 0.00 5.68
2992 3168 2.467566 ATAGAAAAACACGGACGCCT 57.532 45.000 0.00 0.00 0.00 5.52
2993 3169 1.787012 TAGAAAAACACGGACGCCTC 58.213 50.000 0.00 0.00 0.00 4.70
2994 3170 0.883370 AGAAAAACACGGACGCCTCC 60.883 55.000 0.00 0.00 0.00 4.30
2995 3171 1.848932 GAAAAACACGGACGCCTCCC 61.849 60.000 0.00 0.00 31.93 4.30
2996 3172 2.333701 AAAAACACGGACGCCTCCCT 62.334 55.000 0.00 0.00 31.93 4.20
3223 3399 2.125106 CCTTACCAGCGGGAGTGC 60.125 66.667 10.86 0.00 38.05 4.40
3225 3401 1.296715 CTTACCAGCGGGAGTGCTT 59.703 57.895 10.86 0.00 44.46 3.91
3226 3402 0.741221 CTTACCAGCGGGAGTGCTTC 60.741 60.000 10.86 0.00 44.46 3.86
3227 3403 2.501223 TTACCAGCGGGAGTGCTTCG 62.501 60.000 10.86 0.00 44.46 3.79
3228 3404 4.379243 CCAGCGGGAGTGCTTCGT 62.379 66.667 0.00 0.00 44.46 3.85
3229 3405 2.357517 CAGCGGGAGTGCTTCGTT 60.358 61.111 0.00 0.00 44.46 3.85
3230 3406 1.961277 CAGCGGGAGTGCTTCGTTT 60.961 57.895 0.00 0.00 44.46 3.60
3231 3407 1.227853 AGCGGGAGTGCTTCGTTTT 60.228 52.632 0.00 0.00 44.46 2.43
3232 3408 0.034337 AGCGGGAGTGCTTCGTTTTA 59.966 50.000 0.00 0.00 44.46 1.52
3233 3409 0.442699 GCGGGAGTGCTTCGTTTTAG 59.557 55.000 0.00 0.00 0.00 1.85
3234 3410 1.938016 GCGGGAGTGCTTCGTTTTAGA 60.938 52.381 0.00 0.00 0.00 2.10
3235 3411 2.618053 CGGGAGTGCTTCGTTTTAGAT 58.382 47.619 0.00 0.00 0.00 1.98
3236 3412 2.348666 CGGGAGTGCTTCGTTTTAGATG 59.651 50.000 0.00 0.00 0.00 2.90
3237 3413 3.335579 GGGAGTGCTTCGTTTTAGATGT 58.664 45.455 0.00 0.00 0.00 3.06
3238 3414 3.751698 GGGAGTGCTTCGTTTTAGATGTT 59.248 43.478 0.00 0.00 0.00 2.71
3239 3415 4.215613 GGGAGTGCTTCGTTTTAGATGTTT 59.784 41.667 0.00 0.00 0.00 2.83
3240 3416 5.383130 GGAGTGCTTCGTTTTAGATGTTTC 58.617 41.667 0.00 0.00 0.00 2.78
3241 3417 5.179555 GGAGTGCTTCGTTTTAGATGTTTCT 59.820 40.000 0.00 0.00 35.90 2.52
3242 3418 6.293462 GGAGTGCTTCGTTTTAGATGTTTCTT 60.293 38.462 0.00 0.00 33.17 2.52
3243 3419 6.659776 AGTGCTTCGTTTTAGATGTTTCTTC 58.340 36.000 0.00 0.00 33.17 2.87
3244 3420 5.560378 GTGCTTCGTTTTAGATGTTTCTTCG 59.440 40.000 0.00 0.00 33.17 3.79
3245 3421 5.464057 TGCTTCGTTTTAGATGTTTCTTCGA 59.536 36.000 0.00 0.00 33.17 3.71
3246 3422 6.010074 GCTTCGTTTTAGATGTTTCTTCGAG 58.990 40.000 0.00 0.00 33.17 4.04
3247 3423 6.346678 GCTTCGTTTTAGATGTTTCTTCGAGT 60.347 38.462 0.00 0.00 33.17 4.18
3248 3424 7.473027 TTCGTTTTAGATGTTTCTTCGAGTT 57.527 32.000 0.00 0.00 33.17 3.01
3249 3425 7.473027 TCGTTTTAGATGTTTCTTCGAGTTT 57.527 32.000 0.00 0.00 33.17 2.66
3250 3426 7.912383 TCGTTTTAGATGTTTCTTCGAGTTTT 58.088 30.769 0.00 0.00 33.17 2.43
3251 3427 8.392612 TCGTTTTAGATGTTTCTTCGAGTTTTT 58.607 29.630 0.00 0.00 33.17 1.94
3278 3454 5.941948 ATGTTCCTTCGAGTTTTGTTAGG 57.058 39.130 0.00 0.00 0.00 2.69
3279 3455 5.026038 TGTTCCTTCGAGTTTTGTTAGGA 57.974 39.130 0.00 0.00 0.00 2.94
3280 3456 5.617252 TGTTCCTTCGAGTTTTGTTAGGAT 58.383 37.500 0.00 0.00 32.25 3.24
3281 3457 6.059484 TGTTCCTTCGAGTTTTGTTAGGATT 58.941 36.000 0.00 0.00 32.25 3.01
3282 3458 6.544564 TGTTCCTTCGAGTTTTGTTAGGATTT 59.455 34.615 0.00 0.00 32.25 2.17
3283 3459 6.554334 TCCTTCGAGTTTTGTTAGGATTTG 57.446 37.500 0.00 0.00 0.00 2.32
3284 3460 6.059484 TCCTTCGAGTTTTGTTAGGATTTGT 58.941 36.000 0.00 0.00 0.00 2.83
3285 3461 6.017440 TCCTTCGAGTTTTGTTAGGATTTGTG 60.017 38.462 0.00 0.00 0.00 3.33
3286 3462 6.238648 CCTTCGAGTTTTGTTAGGATTTGTGT 60.239 38.462 0.00 0.00 0.00 3.72
3287 3463 6.295039 TCGAGTTTTGTTAGGATTTGTGTC 57.705 37.500 0.00 0.00 0.00 3.67
3288 3464 5.237779 TCGAGTTTTGTTAGGATTTGTGTCC 59.762 40.000 0.00 0.00 38.62 4.02
3297 3473 4.437682 AGGATTTGTGTCCTGTTCAGAA 57.562 40.909 1.00 0.00 46.76 3.02
3298 3474 4.792068 AGGATTTGTGTCCTGTTCAGAAA 58.208 39.130 1.00 0.00 46.76 2.52
3299 3475 4.823989 AGGATTTGTGTCCTGTTCAGAAAG 59.176 41.667 1.00 0.00 46.76 2.62
3300 3476 4.821805 GGATTTGTGTCCTGTTCAGAAAGA 59.178 41.667 1.00 0.00 33.06 2.52
3301 3477 5.278022 GGATTTGTGTCCTGTTCAGAAAGAC 60.278 44.000 1.00 1.83 33.06 3.01
3302 3478 3.194005 TGTGTCCTGTTCAGAAAGACC 57.806 47.619 1.00 1.35 0.00 3.85
3303 3479 2.503765 TGTGTCCTGTTCAGAAAGACCA 59.496 45.455 1.00 3.24 0.00 4.02
3304 3480 3.134458 GTGTCCTGTTCAGAAAGACCAG 58.866 50.000 1.00 0.66 36.60 4.00
3305 3481 3.038280 TGTCCTGTTCAGAAAGACCAGA 58.962 45.455 1.00 0.00 38.95 3.86
3306 3482 3.181465 TGTCCTGTTCAGAAAGACCAGAC 60.181 47.826 1.00 0.00 38.95 3.51
3307 3483 3.038280 TCCTGTTCAGAAAGACCAGACA 58.962 45.455 1.00 0.00 38.95 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.102084 CCGAAGAAGAGAGGATGATGCA 59.898 50.000 0.00 0.00 0.00 3.96
1 2 2.547642 CCCGAAGAAGAGAGGATGATGC 60.548 54.545 0.00 0.00 0.00 3.91
2 3 2.547642 GCCCGAAGAAGAGAGGATGATG 60.548 54.545 0.00 0.00 0.00 3.07
3 4 1.691434 GCCCGAAGAAGAGAGGATGAT 59.309 52.381 0.00 0.00 0.00 2.45
5 6 0.826715 TGCCCGAAGAAGAGAGGATG 59.173 55.000 0.00 0.00 0.00 3.51
6 7 1.573108 TTGCCCGAAGAAGAGAGGAT 58.427 50.000 0.00 0.00 0.00 3.24
7 8 1.348064 TTTGCCCGAAGAAGAGAGGA 58.652 50.000 0.00 0.00 0.00 3.71
8 9 2.185004 TTTTGCCCGAAGAAGAGAGG 57.815 50.000 0.00 0.00 0.00 3.69
9 10 3.623510 GGTATTTTGCCCGAAGAAGAGAG 59.376 47.826 0.00 0.00 0.00 3.20
10 11 3.008594 TGGTATTTTGCCCGAAGAAGAGA 59.991 43.478 0.00 0.00 0.00 3.10
11 12 3.343617 TGGTATTTTGCCCGAAGAAGAG 58.656 45.455 0.00 0.00 0.00 2.85
12 13 3.426787 TGGTATTTTGCCCGAAGAAGA 57.573 42.857 0.00 0.00 0.00 2.87
13 14 3.669557 CGTTGGTATTTTGCCCGAAGAAG 60.670 47.826 0.00 0.00 0.00 2.85
14 15 2.226912 CGTTGGTATTTTGCCCGAAGAA 59.773 45.455 0.00 0.00 0.00 2.52
15 16 1.807742 CGTTGGTATTTTGCCCGAAGA 59.192 47.619 0.00 0.00 0.00 2.87
16 17 1.731098 GCGTTGGTATTTTGCCCGAAG 60.731 52.381 0.00 0.00 0.00 3.79
17 18 0.241481 GCGTTGGTATTTTGCCCGAA 59.759 50.000 0.00 0.00 0.00 4.30
18 19 0.889638 TGCGTTGGTATTTTGCCCGA 60.890 50.000 0.00 0.00 0.00 5.14
19 20 0.039074 TTGCGTTGGTATTTTGCCCG 60.039 50.000 0.00 0.00 0.00 6.13
20 21 1.000394 AGTTGCGTTGGTATTTTGCCC 60.000 47.619 0.00 0.00 0.00 5.36
21 22 2.287909 TGAGTTGCGTTGGTATTTTGCC 60.288 45.455 0.00 0.00 0.00 4.52
22 23 2.724174 GTGAGTTGCGTTGGTATTTTGC 59.276 45.455 0.00 0.00 0.00 3.68
23 24 3.958704 TGTGAGTTGCGTTGGTATTTTG 58.041 40.909 0.00 0.00 0.00 2.44
24 25 4.640789 TTGTGAGTTGCGTTGGTATTTT 57.359 36.364 0.00 0.00 0.00 1.82
25 26 4.640789 TTTGTGAGTTGCGTTGGTATTT 57.359 36.364 0.00 0.00 0.00 1.40
26 27 4.846779 ATTTGTGAGTTGCGTTGGTATT 57.153 36.364 0.00 0.00 0.00 1.89
27 28 4.142687 GCTATTTGTGAGTTGCGTTGGTAT 60.143 41.667 0.00 0.00 0.00 2.73
28 29 3.187637 GCTATTTGTGAGTTGCGTTGGTA 59.812 43.478 0.00 0.00 0.00 3.25
29 30 2.031157 GCTATTTGTGAGTTGCGTTGGT 60.031 45.455 0.00 0.00 0.00 3.67
30 31 2.031245 TGCTATTTGTGAGTTGCGTTGG 60.031 45.455 0.00 0.00 0.00 3.77
31 32 3.266541 TGCTATTTGTGAGTTGCGTTG 57.733 42.857 0.00 0.00 0.00 4.10
32 33 3.980646 TTGCTATTTGTGAGTTGCGTT 57.019 38.095 0.00 0.00 0.00 4.84
33 34 3.315191 ACTTTGCTATTTGTGAGTTGCGT 59.685 39.130 0.00 0.00 0.00 5.24
34 35 3.665409 CACTTTGCTATTTGTGAGTTGCG 59.335 43.478 0.00 0.00 32.72 4.85
35 36 3.426525 GCACTTTGCTATTTGTGAGTTGC 59.573 43.478 0.00 0.00 40.96 4.17
36 37 3.983344 GGCACTTTGCTATTTGTGAGTTG 59.017 43.478 0.00 0.00 44.28 3.16
37 38 3.636300 TGGCACTTTGCTATTTGTGAGTT 59.364 39.130 0.00 0.00 44.28 3.01
38 39 3.221771 TGGCACTTTGCTATTTGTGAGT 58.778 40.909 0.00 0.00 44.28 3.41
39 40 3.921119 TGGCACTTTGCTATTTGTGAG 57.079 42.857 0.00 0.00 44.28 3.51
46 47 8.355169 CAAGTATATCAAATGGCACTTTGCTAT 58.645 33.333 15.89 15.89 46.84 2.97
47 48 7.339212 ACAAGTATATCAAATGGCACTTTGCTA 59.661 33.333 13.88 10.73 44.28 3.49
48 49 6.153340 ACAAGTATATCAAATGGCACTTTGCT 59.847 34.615 13.88 9.36 44.28 3.91
49 50 6.332630 ACAAGTATATCAAATGGCACTTTGC 58.667 36.000 13.88 0.00 44.08 3.68
50 51 8.677300 AGTACAAGTATATCAAATGGCACTTTG 58.323 33.333 13.00 13.00 37.44 2.77
51 52 8.807948 AGTACAAGTATATCAAATGGCACTTT 57.192 30.769 0.00 0.00 0.00 2.66
52 53 8.807948 AAGTACAAGTATATCAAATGGCACTT 57.192 30.769 0.00 0.00 0.00 3.16
53 54 8.046708 TGAAGTACAAGTATATCAAATGGCACT 58.953 33.333 0.00 0.00 0.00 4.40
54 55 8.122952 GTGAAGTACAAGTATATCAAATGGCAC 58.877 37.037 0.00 0.00 0.00 5.01
55 56 7.282224 GGTGAAGTACAAGTATATCAAATGGCA 59.718 37.037 0.00 0.00 0.00 4.92
56 57 7.499232 AGGTGAAGTACAAGTATATCAAATGGC 59.501 37.037 0.00 0.00 0.00 4.40
57 58 8.964476 AGGTGAAGTACAAGTATATCAAATGG 57.036 34.615 0.00 0.00 0.00 3.16
59 60 9.765795 GCTAGGTGAAGTACAAGTATATCAAAT 57.234 33.333 0.00 0.00 0.00 2.32
60 61 8.202137 GGCTAGGTGAAGTACAAGTATATCAAA 58.798 37.037 0.00 0.00 0.00 2.69
61 62 7.469594 CGGCTAGGTGAAGTACAAGTATATCAA 60.470 40.741 0.00 0.00 0.00 2.57
62 63 6.016527 CGGCTAGGTGAAGTACAAGTATATCA 60.017 42.308 0.00 0.00 0.00 2.15
63 64 6.380190 CGGCTAGGTGAAGTACAAGTATATC 58.620 44.000 0.00 0.00 0.00 1.63
83 84 2.045926 GACCACCATGAAGCGGCT 60.046 61.111 0.00 0.00 0.00 5.52
85 86 2.036958 TTATGACCACCATGAAGCGG 57.963 50.000 0.00 0.00 36.71 5.52
126 127 4.448395 GCACAAGCAAAAACAAGATGCATA 59.552 37.500 0.00 0.00 42.45 3.14
135 136 1.142748 CCCGGCACAAGCAAAAACA 59.857 52.632 0.00 0.00 44.61 2.83
136 137 1.594021 CCCCGGCACAAGCAAAAAC 60.594 57.895 0.00 0.00 44.61 2.43
149 150 1.378514 CCATCCAAACAGACCCCGG 60.379 63.158 0.00 0.00 0.00 5.73
164 183 3.801997 CTGGCTCCCGGCTTCCAT 61.802 66.667 0.00 0.00 41.46 3.41
194 213 2.293122 GCATGCCAATTATTAGCGGACA 59.707 45.455 6.36 0.00 0.00 4.02
202 221 3.642848 CCAACTAGGGCATGCCAATTATT 59.357 43.478 36.56 20.55 37.98 1.40
258 278 7.178274 AGCAATCCAGTTCCATAAAAACACATA 59.822 33.333 0.00 0.00 0.00 2.29
261 281 5.783111 AGCAATCCAGTTCCATAAAAACAC 58.217 37.500 0.00 0.00 0.00 3.32
268 288 2.754552 GTGCAAGCAATCCAGTTCCATA 59.245 45.455 0.00 0.00 0.00 2.74
272 292 1.251251 AGGTGCAAGCAATCCAGTTC 58.749 50.000 0.00 0.00 36.26 3.01
304 324 2.429930 CCCCGACAGGTTTGCTCA 59.570 61.111 0.00 0.00 35.12 4.26
314 334 0.030501 ATATTGTCCCTCCCCCGACA 60.031 55.000 0.00 0.00 37.23 4.35
317 337 1.202891 GGAAATATTGTCCCTCCCCCG 60.203 57.143 0.00 0.00 0.00 5.73
325 346 2.480845 CTCCGACGGGAAATATTGTCC 58.519 52.381 15.25 7.69 43.27 4.02
343 364 0.178068 TTGTCCCGGATAGCAAGCTC 59.822 55.000 0.73 0.00 0.00 4.09
347 368 4.764050 TTTCTATTGTCCCGGATAGCAA 57.236 40.909 0.73 2.45 0.00 3.91
353 374 4.703093 GGTTTCATTTTCTATTGTCCCGGA 59.297 41.667 0.73 0.00 0.00 5.14
357 378 7.830739 AGATGTGGTTTCATTTTCTATTGTCC 58.169 34.615 0.00 0.00 0.00 4.02
363 384 8.634335 TCATGAAGATGTGGTTTCATTTTCTA 57.366 30.769 0.00 0.95 40.93 2.10
376 397 5.632244 TGTCCACAATTCATGAAGATGTG 57.368 39.130 31.26 31.26 39.63 3.21
390 511 3.419943 TGCTGCTTATGAATGTCCACAA 58.580 40.909 0.00 0.00 0.00 3.33
393 514 6.964807 ATTATTGCTGCTTATGAATGTCCA 57.035 33.333 0.00 0.00 0.00 4.02
399 520 9.002600 ACGAATCATATTATTGCTGCTTATGAA 57.997 29.630 0.00 0.00 34.12 2.57
413 534 6.266786 TGGAAGGCTCACTACGAATCATATTA 59.733 38.462 0.00 0.00 0.00 0.98
416 537 3.958147 TGGAAGGCTCACTACGAATCATA 59.042 43.478 0.00 0.00 0.00 2.15
419 540 2.427453 TCTGGAAGGCTCACTACGAATC 59.573 50.000 0.00 0.00 0.00 2.52
421 542 1.919240 TCTGGAAGGCTCACTACGAA 58.081 50.000 0.00 0.00 0.00 3.85
427 548 4.439289 GCAATTTGTATCTGGAAGGCTCAC 60.439 45.833 0.00 0.00 0.00 3.51
454 575 6.381481 TGGATGATTATTTCACATGAGCAC 57.619 37.500 0.00 0.00 37.11 4.40
473 594 4.295141 TGGGTCTACAACGATTTTGGAT 57.705 40.909 0.00 0.00 0.00 3.41
474 595 3.773418 TGGGTCTACAACGATTTTGGA 57.227 42.857 0.00 0.00 0.00 3.53
476 597 4.069304 TCCTTGGGTCTACAACGATTTTG 58.931 43.478 0.00 0.00 0.00 2.44
478 599 4.360951 TTCCTTGGGTCTACAACGATTT 57.639 40.909 0.00 0.00 0.00 2.17
481 602 4.529377 AGTAATTCCTTGGGTCTACAACGA 59.471 41.667 0.00 0.00 0.00 3.85
482 603 4.828829 AGTAATTCCTTGGGTCTACAACG 58.171 43.478 0.00 0.00 0.00 4.10
483 604 8.803397 AAATAGTAATTCCTTGGGTCTACAAC 57.197 34.615 0.00 0.00 0.00 3.32
484 605 8.050930 GGAAATAGTAATTCCTTGGGTCTACAA 58.949 37.037 9.43 0.00 42.53 2.41
485 606 7.366191 GGGAAATAGTAATTCCTTGGGTCTACA 60.366 40.741 15.19 0.00 44.71 2.74
486 607 6.996879 GGGAAATAGTAATTCCTTGGGTCTAC 59.003 42.308 15.19 0.00 44.71 2.59
487 608 6.679303 TGGGAAATAGTAATTCCTTGGGTCTA 59.321 38.462 15.19 0.00 44.71 2.59
488 609 5.494706 TGGGAAATAGTAATTCCTTGGGTCT 59.505 40.000 15.19 0.00 44.71 3.85
489 610 5.762279 TGGGAAATAGTAATTCCTTGGGTC 58.238 41.667 15.19 0.57 44.71 4.46
490 611 5.806955 TGGGAAATAGTAATTCCTTGGGT 57.193 39.130 15.19 0.00 44.71 4.51
491 612 5.362717 GGTTGGGAAATAGTAATTCCTTGGG 59.637 44.000 15.19 0.00 44.71 4.12
492 613 5.955355 TGGTTGGGAAATAGTAATTCCTTGG 59.045 40.000 15.19 0.00 44.71 3.61
493 614 7.417797 CCATGGTTGGGAAATAGTAATTCCTTG 60.418 40.741 15.19 5.69 44.71 3.61
494 615 6.611236 CCATGGTTGGGAAATAGTAATTCCTT 59.389 38.462 15.19 0.00 44.71 3.36
495 616 6.136155 CCATGGTTGGGAAATAGTAATTCCT 58.864 40.000 15.19 0.00 44.71 3.36
496 617 6.405278 CCATGGTTGGGAAATAGTAATTCC 57.595 41.667 8.31 8.31 44.61 3.01
512 633 6.545448 TTGGATTTCACTCCACCCATGGTT 62.545 45.833 11.73 0.00 44.97 3.67
513 634 5.112653 TTGGATTTCACTCCACCCATGGT 62.113 47.826 11.73 0.00 44.97 3.55
514 635 2.557229 TTGGATTTCACTCCACCCATGG 60.557 50.000 4.14 4.14 44.97 3.66
515 636 2.493278 GTTGGATTTCACTCCACCCATG 59.507 50.000 0.00 0.00 44.97 3.66
516 637 2.109834 TGTTGGATTTCACTCCACCCAT 59.890 45.455 0.00 0.00 44.97 4.00
517 638 1.496857 TGTTGGATTTCACTCCACCCA 59.503 47.619 0.00 0.00 44.97 4.51
518 639 2.286365 TGTTGGATTTCACTCCACCC 57.714 50.000 0.00 0.00 44.97 4.61
519 640 4.664150 TTTTGTTGGATTTCACTCCACC 57.336 40.909 0.00 0.00 44.97 4.61
543 664 6.399639 AACCGGTTGAAAAATGTTACTCAT 57.600 33.333 21.56 0.00 38.57 2.90
544 665 5.838531 AACCGGTTGAAAAATGTTACTCA 57.161 34.783 21.56 0.00 0.00 3.41
545 666 5.854866 GCTAACCGGTTGAAAAATGTTACTC 59.145 40.000 30.08 0.00 0.00 2.59
546 667 5.299782 TGCTAACCGGTTGAAAAATGTTACT 59.700 36.000 30.08 0.00 0.00 2.24
547 668 5.521544 TGCTAACCGGTTGAAAAATGTTAC 58.478 37.500 30.08 5.57 0.00 2.50
548 669 5.769484 TGCTAACCGGTTGAAAAATGTTA 57.231 34.783 30.08 4.42 0.00 2.41
551 672 3.367630 GCATGCTAACCGGTTGAAAAATG 59.632 43.478 30.08 22.79 0.00 2.32
562 683 6.704512 ATTTTTAAAAGTGCATGCTAACCG 57.295 33.333 20.33 0.00 0.00 4.44
595 716 8.240682 GTCCATATTAGTTTGTGCAATGTAACA 58.759 33.333 0.00 0.00 0.00 2.41
602 723 7.759489 AAAGAGTCCATATTAGTTTGTGCAA 57.241 32.000 0.00 0.00 0.00 4.08
651 772 9.327731 ACAAAAGGTCCATTTATACCCATAAAA 57.672 29.630 0.00 0.00 39.46 1.52
652 773 8.903059 ACAAAAGGTCCATTTATACCCATAAA 57.097 30.769 0.00 0.00 40.13 1.40
653 774 8.903059 AACAAAAGGTCCATTTATACCCATAA 57.097 30.769 0.00 0.00 36.34 1.90
654 775 8.903059 AAACAAAAGGTCCATTTATACCCATA 57.097 30.769 0.00 0.00 36.34 2.74
655 776 7.806680 AAACAAAAGGTCCATTTATACCCAT 57.193 32.000 0.00 0.00 36.34 4.00
656 777 7.511028 AGAAAACAAAAGGTCCATTTATACCCA 59.489 33.333 0.00 0.00 36.34 4.51
657 778 7.903145 AGAAAACAAAAGGTCCATTTATACCC 58.097 34.615 0.00 0.00 36.34 3.69
661 782 8.646900 TGCTAAGAAAACAAAAGGTCCATTTAT 58.353 29.630 0.00 0.00 0.00 1.40
662 783 8.012957 TGCTAAGAAAACAAAAGGTCCATTTA 57.987 30.769 0.00 0.00 0.00 1.40
663 784 6.883744 TGCTAAGAAAACAAAAGGTCCATTT 58.116 32.000 0.00 0.00 0.00 2.32
664 785 6.478512 TGCTAAGAAAACAAAAGGTCCATT 57.521 33.333 0.00 0.00 0.00 3.16
665 786 6.127196 TGTTGCTAAGAAAACAAAAGGTCCAT 60.127 34.615 0.00 0.00 33.50 3.41
666 787 5.186021 TGTTGCTAAGAAAACAAAAGGTCCA 59.814 36.000 0.00 0.00 33.50 4.02
667 788 5.656480 TGTTGCTAAGAAAACAAAAGGTCC 58.344 37.500 0.00 0.00 33.50 4.46
668 789 6.756542 ACATGTTGCTAAGAAAACAAAAGGTC 59.243 34.615 0.00 0.00 39.57 3.85
669 790 6.534793 CACATGTTGCTAAGAAAACAAAAGGT 59.465 34.615 0.00 0.00 39.57 3.50
670 791 6.018832 CCACATGTTGCTAAGAAAACAAAAGG 60.019 38.462 0.00 0.00 39.57 3.11
671 792 6.756074 TCCACATGTTGCTAAGAAAACAAAAG 59.244 34.615 0.00 0.00 39.57 2.27
672 793 6.533367 GTCCACATGTTGCTAAGAAAACAAAA 59.467 34.615 0.00 0.00 39.57 2.44
673 794 6.039616 GTCCACATGTTGCTAAGAAAACAAA 58.960 36.000 0.00 0.00 39.57 2.83
674 795 5.359576 AGTCCACATGTTGCTAAGAAAACAA 59.640 36.000 0.00 0.00 39.57 2.83
675 796 4.887071 AGTCCACATGTTGCTAAGAAAACA 59.113 37.500 0.00 0.00 40.36 2.83
676 797 5.438761 AGTCCACATGTTGCTAAGAAAAC 57.561 39.130 0.00 0.00 0.00 2.43
677 798 6.463995 AAAGTCCACATGTTGCTAAGAAAA 57.536 33.333 0.00 0.00 0.00 2.29
678 799 6.463995 AAAAGTCCACATGTTGCTAAGAAA 57.536 33.333 0.00 0.00 0.00 2.52
679 800 6.463995 AAAAAGTCCACATGTTGCTAAGAA 57.536 33.333 0.00 0.00 0.00 2.52
747 868 2.177016 GTCCATAATGGCTTTACCCCCT 59.823 50.000 0.00 0.00 37.47 4.79
749 870 3.595190 AGTCCATAATGGCTTTACCCC 57.405 47.619 0.00 0.00 37.47 4.95
753 874 9.303116 TCTAACAAAAAGTCCATAATGGCTTTA 57.697 29.630 8.82 0.00 40.42 1.85
754 875 8.189119 TCTAACAAAAAGTCCATAATGGCTTT 57.811 30.769 0.00 0.00 41.87 3.51
756 877 7.093771 CCTTCTAACAAAAAGTCCATAATGGCT 60.094 37.037 0.00 0.00 37.47 4.75
757 878 7.035612 CCTTCTAACAAAAAGTCCATAATGGC 58.964 38.462 0.00 0.00 37.47 4.40
758 879 8.122472 ACCTTCTAACAAAAAGTCCATAATGG 57.878 34.615 0.00 0.00 39.43 3.16
759 880 9.014297 AGACCTTCTAACAAAAAGTCCATAATG 57.986 33.333 0.00 0.00 0.00 1.90
760 881 9.588096 AAGACCTTCTAACAAAAAGTCCATAAT 57.412 29.630 0.00 0.00 0.00 1.28
761 882 8.990163 AAGACCTTCTAACAAAAAGTCCATAA 57.010 30.769 0.00 0.00 0.00 1.90
781 902 2.307686 TGTGGGACAGGGAAATAAGACC 59.692 50.000 0.00 0.00 41.80 3.85
782 903 3.713826 TGTGGGACAGGGAAATAAGAC 57.286 47.619 0.00 0.00 41.80 3.01
783 904 4.352595 TCTTTGTGGGACAGGGAAATAAGA 59.647 41.667 0.00 0.00 41.80 2.10
784 905 4.662278 TCTTTGTGGGACAGGGAAATAAG 58.338 43.478 0.00 0.00 41.80 1.73
785 906 4.733077 TCTTTGTGGGACAGGGAAATAA 57.267 40.909 0.00 0.00 41.80 1.40
791 913 2.623416 GTTTCTTCTTTGTGGGACAGGG 59.377 50.000 0.00 0.00 41.80 4.45
796 918 3.943671 TCCAGTTTCTTCTTTGTGGGA 57.056 42.857 0.00 0.00 0.00 4.37
797 919 5.535753 ATTTCCAGTTTCTTCTTTGTGGG 57.464 39.130 0.00 0.00 0.00 4.61
815 937 7.169813 CCTTTTTGGCAGTGAGAAACTAATTTC 59.830 37.037 0.00 0.00 44.02 2.17
856 978 1.933853 CCGGCTATGTCTAACTGTTGC 59.066 52.381 2.69 0.00 0.00 4.17
865 987 2.590092 GGTTGGCCGGCTATGTCT 59.410 61.111 28.56 0.00 0.00 3.41
994 1124 1.103398 ATAAGCCTGTCCATTGCGGC 61.103 55.000 0.00 0.00 42.79 6.53
1236 1375 1.019278 CGTCATCTTGTTCCGGTGGG 61.019 60.000 0.00 0.00 0.00 4.61
1337 1476 3.893753 TTCAGGGAATGAAGGGAACAA 57.106 42.857 0.00 0.00 43.09 2.83
1351 1495 2.014068 GCCGAGAATTCAGGTTCAGGG 61.014 57.143 17.64 3.06 32.40 4.45
1442 1586 2.264480 CCGATGCGACCTGTGGAA 59.736 61.111 0.00 0.00 0.00 3.53
2058 2208 0.683412 CCGGCAGGATGATCATGAGA 59.317 55.000 14.30 0.00 39.69 3.27
2145 2295 1.153086 GGTGTAGCTGGCCATGGAG 60.153 63.158 18.40 5.92 0.00 3.86
2314 2464 5.765677 GGGGATGATGATGATGATGATGATC 59.234 44.000 0.00 0.00 0.00 2.92
2315 2465 5.433381 AGGGGATGATGATGATGATGATGAT 59.567 40.000 0.00 0.00 0.00 2.45
2317 2467 4.884164 CAGGGGATGATGATGATGATGATG 59.116 45.833 0.00 0.00 0.00 3.07
2409 2580 0.826715 CGATCTCAAGAGGAAGGGCA 59.173 55.000 0.00 0.00 0.00 5.36
2411 2582 1.068434 GCTCGATCTCAAGAGGAAGGG 59.932 57.143 0.00 0.00 35.19 3.95
2438 2609 8.404000 TCTTGAATCGTAAACTACATCCTAGTC 58.596 37.037 0.00 0.00 0.00 2.59
2475 2646 5.742453 CAGCAGCTAAGCAAATTCTAACATG 59.258 40.000 0.00 0.00 36.85 3.21
2586 2758 3.429410 GGGGCATTTCCTTGATTTCTTCG 60.429 47.826 0.00 0.00 34.39 3.79
2595 2767 3.812577 GAAACGGGGCATTTCCTTG 57.187 52.632 0.00 0.00 31.12 3.61
2631 2803 6.511444 CGGTACAAAAACGACAATTAACCAGA 60.511 38.462 0.00 0.00 0.00 3.86
2715 2890 9.883142 ACCTCTGAAATTTGAAGAATACTCTAG 57.117 33.333 0.00 0.00 0.00 2.43
2717 2892 9.579932 AAACCTCTGAAATTTGAAGAATACTCT 57.420 29.630 0.00 0.00 0.00 3.24
2718 2893 9.617975 CAAACCTCTGAAATTTGAAGAATACTC 57.382 33.333 0.00 0.00 35.73 2.59
2722 2897 7.147672 ACCACAAACCTCTGAAATTTGAAGAAT 60.148 33.333 16.10 0.00 36.91 2.40
2788 2963 2.358939 TTCTCGCTCCCTTTTCGTAC 57.641 50.000 0.00 0.00 0.00 3.67
2799 2974 1.301677 CCACCAAGCCTTTCTCGCTC 61.302 60.000 0.00 0.00 34.84 5.03
2800 2975 1.302832 CCACCAAGCCTTTCTCGCT 60.303 57.895 0.00 0.00 38.53 4.93
2801 2976 0.889186 TTCCACCAAGCCTTTCTCGC 60.889 55.000 0.00 0.00 0.00 5.03
2802 2977 0.875059 GTTCCACCAAGCCTTTCTCG 59.125 55.000 0.00 0.00 0.00 4.04
2844 3020 8.297426 GGAGTATAAATCATGACATCTGTACGA 58.703 37.037 0.00 0.00 0.00 3.43
2855 3031 5.010719 GTGACGGAGGGAGTATAAATCATGA 59.989 44.000 0.00 0.00 0.00 3.07
2862 3038 5.750352 AAAAAGTGACGGAGGGAGTATAA 57.250 39.130 0.00 0.00 0.00 0.98
2871 3047 9.438291 CATTAATGCTTATAAAAAGTGACGGAG 57.562 33.333 1.74 0.00 0.00 4.63
2872 3048 8.952278 ACATTAATGCTTATAAAAAGTGACGGA 58.048 29.630 15.48 0.00 0.00 4.69
2881 3057 9.868277 CAAGGTCCAACATTAATGCTTATAAAA 57.132 29.630 15.48 0.00 0.00 1.52
2882 3058 9.249053 TCAAGGTCCAACATTAATGCTTATAAA 57.751 29.630 15.48 0.00 0.00 1.40
2883 3059 8.815565 TCAAGGTCCAACATTAATGCTTATAA 57.184 30.769 15.48 0.00 0.00 0.98
2884 3060 8.995027 ATCAAGGTCCAACATTAATGCTTATA 57.005 30.769 15.48 2.66 0.00 0.98
2885 3061 7.902920 ATCAAGGTCCAACATTAATGCTTAT 57.097 32.000 15.48 0.00 0.00 1.73
2886 3062 8.815565 TTATCAAGGTCCAACATTAATGCTTA 57.184 30.769 15.48 0.00 0.00 3.09
2887 3063 7.397192 ACTTATCAAGGTCCAACATTAATGCTT 59.603 33.333 15.48 6.64 0.00 3.91
2888 3064 6.891908 ACTTATCAAGGTCCAACATTAATGCT 59.108 34.615 15.48 0.00 0.00 3.79
2889 3065 6.974622 CACTTATCAAGGTCCAACATTAATGC 59.025 38.462 15.48 0.00 0.00 3.56
2890 3066 8.184192 GTCACTTATCAAGGTCCAACATTAATG 58.816 37.037 14.01 14.01 0.00 1.90
2891 3067 7.888021 TGTCACTTATCAAGGTCCAACATTAAT 59.112 33.333 0.00 0.00 0.00 1.40
2892 3068 7.227873 TGTCACTTATCAAGGTCCAACATTAA 58.772 34.615 0.00 0.00 0.00 1.40
2893 3069 6.774673 TGTCACTTATCAAGGTCCAACATTA 58.225 36.000 0.00 0.00 0.00 1.90
2894 3070 5.630121 TGTCACTTATCAAGGTCCAACATT 58.370 37.500 0.00 0.00 0.00 2.71
2895 3071 5.241403 TGTCACTTATCAAGGTCCAACAT 57.759 39.130 0.00 0.00 0.00 2.71
2896 3072 4.698201 TGTCACTTATCAAGGTCCAACA 57.302 40.909 0.00 0.00 0.00 3.33
2897 3073 5.291128 CGTATGTCACTTATCAAGGTCCAAC 59.709 44.000 0.00 0.00 0.00 3.77
2898 3074 5.046878 ACGTATGTCACTTATCAAGGTCCAA 60.047 40.000 0.00 0.00 0.00 3.53
2899 3075 4.464951 ACGTATGTCACTTATCAAGGTCCA 59.535 41.667 0.00 0.00 0.00 4.02
2900 3076 4.804139 CACGTATGTCACTTATCAAGGTCC 59.196 45.833 0.00 0.00 0.00 4.46
2901 3077 5.288712 CACACGTATGTCACTTATCAAGGTC 59.711 44.000 0.00 0.00 36.72 3.85
2902 3078 5.047590 TCACACGTATGTCACTTATCAAGGT 60.048 40.000 0.00 0.00 36.72 3.50
2903 3079 5.288712 GTCACACGTATGTCACTTATCAAGG 59.711 44.000 0.00 0.00 36.72 3.61
2904 3080 5.861787 TGTCACACGTATGTCACTTATCAAG 59.138 40.000 0.00 0.00 36.72 3.02
2905 3081 5.631929 GTGTCACACGTATGTCACTTATCAA 59.368 40.000 15.44 0.00 36.72 2.57
2906 3082 5.158494 GTGTCACACGTATGTCACTTATCA 58.842 41.667 15.44 0.00 36.72 2.15
2907 3083 5.682049 GTGTCACACGTATGTCACTTATC 57.318 43.478 15.44 0.00 36.72 1.75
2921 3097 3.128349 AGTATTGTCAACCGTGTCACAC 58.872 45.455 0.00 0.00 0.00 3.82
2922 3098 3.462483 AGTATTGTCAACCGTGTCACA 57.538 42.857 3.42 0.00 0.00 3.58
2923 3099 4.801891 TCTAGTATTGTCAACCGTGTCAC 58.198 43.478 0.00 0.00 0.00 3.67
2924 3100 5.010314 AGTTCTAGTATTGTCAACCGTGTCA 59.990 40.000 0.00 0.00 0.00 3.58
2925 3101 5.467705 AGTTCTAGTATTGTCAACCGTGTC 58.532 41.667 0.00 0.00 0.00 3.67
2926 3102 5.464030 AGTTCTAGTATTGTCAACCGTGT 57.536 39.130 0.00 0.00 0.00 4.49
2927 3103 5.347907 GGAAGTTCTAGTATTGTCAACCGTG 59.652 44.000 2.25 0.00 0.00 4.94
2928 3104 5.476614 GGAAGTTCTAGTATTGTCAACCGT 58.523 41.667 2.25 0.00 0.00 4.83
2929 3105 4.868734 GGGAAGTTCTAGTATTGTCAACCG 59.131 45.833 2.25 0.00 0.00 4.44
2930 3106 6.051179 AGGGAAGTTCTAGTATTGTCAACC 57.949 41.667 2.25 0.00 0.00 3.77
2931 3107 5.805994 CGAGGGAAGTTCTAGTATTGTCAAC 59.194 44.000 2.25 0.00 0.00 3.18
2932 3108 5.479375 ACGAGGGAAGTTCTAGTATTGTCAA 59.521 40.000 2.25 0.00 0.00 3.18
2933 3109 5.014858 ACGAGGGAAGTTCTAGTATTGTCA 58.985 41.667 2.25 0.00 0.00 3.58
2934 3110 5.579564 ACGAGGGAAGTTCTAGTATTGTC 57.420 43.478 2.25 0.00 0.00 3.18
2935 3111 5.593502 CCTACGAGGGAAGTTCTAGTATTGT 59.406 44.000 2.25 0.00 0.00 2.71
2936 3112 5.507650 GCCTACGAGGGAAGTTCTAGTATTG 60.508 48.000 2.25 0.06 35.37 1.90
2937 3113 4.583907 GCCTACGAGGGAAGTTCTAGTATT 59.416 45.833 2.25 0.00 35.37 1.89
2938 3114 4.143543 GCCTACGAGGGAAGTTCTAGTAT 58.856 47.826 2.25 0.00 35.37 2.12
2939 3115 3.054139 TGCCTACGAGGGAAGTTCTAGTA 60.054 47.826 2.25 2.29 35.37 1.82
2940 3116 2.291411 TGCCTACGAGGGAAGTTCTAGT 60.291 50.000 2.25 1.25 35.37 2.57
2941 3117 2.376109 TGCCTACGAGGGAAGTTCTAG 58.624 52.381 2.25 0.00 35.37 2.43
2942 3118 2.519771 TGCCTACGAGGGAAGTTCTA 57.480 50.000 2.25 0.00 35.37 2.10
2943 3119 1.640917 TTGCCTACGAGGGAAGTTCT 58.359 50.000 2.25 0.00 41.00 3.01
2944 3120 2.467566 TTTGCCTACGAGGGAAGTTC 57.532 50.000 7.63 0.00 46.55 3.01
2945 3121 2.779506 CTTTTGCCTACGAGGGAAGTT 58.220 47.619 7.63 0.00 46.55 2.66
2946 3122 1.610886 GCTTTTGCCTACGAGGGAAGT 60.611 52.381 7.63 0.00 46.55 3.01
2947 3123 1.087501 GCTTTTGCCTACGAGGGAAG 58.912 55.000 7.63 0.76 46.55 3.46
2948 3124 0.672401 CGCTTTTGCCTACGAGGGAA 60.672 55.000 4.23 4.23 44.34 3.97
2949 3125 1.079405 CGCTTTTGCCTACGAGGGA 60.079 57.895 0.00 0.00 43.93 4.20
2950 3126 2.750888 GCGCTTTTGCCTACGAGGG 61.751 63.158 0.00 0.00 43.93 4.30
2951 3127 1.369091 ATGCGCTTTTGCCTACGAGG 61.369 55.000 9.73 0.00 43.93 4.63
2952 3128 0.447801 AATGCGCTTTTGCCTACGAG 59.552 50.000 9.73 0.00 43.93 4.18
2953 3129 1.728068 TAATGCGCTTTTGCCTACGA 58.272 45.000 14.18 0.00 43.93 3.43
2954 3130 2.535934 TTAATGCGCTTTTGCCTACG 57.464 45.000 14.18 0.00 43.93 3.51
2955 3131 5.418310 TCTATTAATGCGCTTTTGCCTAC 57.582 39.130 14.18 0.00 43.93 3.18
2956 3132 6.443934 TTTCTATTAATGCGCTTTTGCCTA 57.556 33.333 14.18 0.00 43.93 3.93
2957 3133 4.981806 TTCTATTAATGCGCTTTTGCCT 57.018 36.364 14.18 0.08 43.93 4.75
2958 3134 6.128688 TGTTTTTCTATTAATGCGCTTTTGCC 60.129 34.615 14.18 0.00 43.93 4.52
2959 3135 6.731948 GTGTTTTTCTATTAATGCGCTTTTGC 59.268 34.615 14.18 0.00 43.23 3.68
2960 3136 6.942224 CGTGTTTTTCTATTAATGCGCTTTTG 59.058 34.615 14.18 3.32 0.00 2.44
2961 3137 6.088883 CCGTGTTTTTCTATTAATGCGCTTTT 59.911 34.615 14.18 7.59 0.00 2.27
2962 3138 5.571357 CCGTGTTTTTCTATTAATGCGCTTT 59.429 36.000 9.73 11.90 0.00 3.51
2963 3139 5.092781 CCGTGTTTTTCTATTAATGCGCTT 58.907 37.500 9.73 0.00 0.00 4.68
2964 3140 4.393680 TCCGTGTTTTTCTATTAATGCGCT 59.606 37.500 9.73 0.00 0.00 5.92
2965 3141 4.494410 GTCCGTGTTTTTCTATTAATGCGC 59.506 41.667 0.00 0.00 0.00 6.09
2966 3142 4.721977 CGTCCGTGTTTTTCTATTAATGCG 59.278 41.667 0.00 0.00 0.00 4.73
2967 3143 4.494410 GCGTCCGTGTTTTTCTATTAATGC 59.506 41.667 0.00 0.00 0.00 3.56
2968 3144 5.025826 GGCGTCCGTGTTTTTCTATTAATG 58.974 41.667 0.00 0.00 0.00 1.90
2969 3145 4.939439 AGGCGTCCGTGTTTTTCTATTAAT 59.061 37.500 0.00 0.00 0.00 1.40
2970 3146 4.317488 AGGCGTCCGTGTTTTTCTATTAA 58.683 39.130 0.00 0.00 0.00 1.40
2971 3147 3.928375 GAGGCGTCCGTGTTTTTCTATTA 59.072 43.478 0.00 0.00 0.00 0.98
2972 3148 2.740447 GAGGCGTCCGTGTTTTTCTATT 59.260 45.455 0.00 0.00 0.00 1.73
2973 3149 2.344025 GAGGCGTCCGTGTTTTTCTAT 58.656 47.619 0.00 0.00 0.00 1.98
2974 3150 1.606224 GGAGGCGTCCGTGTTTTTCTA 60.606 52.381 10.16 0.00 31.37 2.10
2975 3151 0.883370 GGAGGCGTCCGTGTTTTTCT 60.883 55.000 10.16 0.00 31.37 2.52
2976 3152 1.572941 GGAGGCGTCCGTGTTTTTC 59.427 57.895 10.16 0.00 31.37 2.29
2977 3153 1.895231 GGGAGGCGTCCGTGTTTTT 60.895 57.895 18.78 0.00 45.05 1.94
2978 3154 2.281276 GGGAGGCGTCCGTGTTTT 60.281 61.111 18.78 0.00 45.05 2.43
2979 3155 3.239253 AGGGAGGCGTCCGTGTTT 61.239 61.111 19.16 0.11 45.05 2.83
3206 3382 2.125106 GCACTCCCGCTGGTAAGG 60.125 66.667 0.00 0.00 0.00 2.69
3207 3383 0.741221 GAAGCACTCCCGCTGGTAAG 60.741 60.000 0.00 0.00 42.89 2.34
3208 3384 1.295423 GAAGCACTCCCGCTGGTAA 59.705 57.895 0.00 0.00 42.89 2.85
3209 3385 2.978824 GAAGCACTCCCGCTGGTA 59.021 61.111 0.00 0.00 42.89 3.25
3210 3386 4.379243 CGAAGCACTCCCGCTGGT 62.379 66.667 0.00 0.00 42.89 4.00
3211 3387 3.883744 AACGAAGCACTCCCGCTGG 62.884 63.158 0.00 0.00 42.89 4.85
3212 3388 1.507141 AAAACGAAGCACTCCCGCTG 61.507 55.000 0.00 0.00 42.89 5.18
3213 3389 0.034337 TAAAACGAAGCACTCCCGCT 59.966 50.000 0.00 0.00 46.67 5.52
3214 3390 0.442699 CTAAAACGAAGCACTCCCGC 59.557 55.000 0.00 0.00 0.00 6.13
3215 3391 2.074547 TCTAAAACGAAGCACTCCCG 57.925 50.000 0.00 0.00 0.00 5.14
3216 3392 3.335579 ACATCTAAAACGAAGCACTCCC 58.664 45.455 0.00 0.00 0.00 4.30
3217 3393 5.179555 AGAAACATCTAAAACGAAGCACTCC 59.820 40.000 0.00 0.00 0.00 3.85
3218 3394 6.229561 AGAAACATCTAAAACGAAGCACTC 57.770 37.500 0.00 0.00 0.00 3.51
3219 3395 6.564125 CGAAGAAACATCTAAAACGAAGCACT 60.564 38.462 0.00 0.00 0.00 4.40
3220 3396 5.560378 CGAAGAAACATCTAAAACGAAGCAC 59.440 40.000 0.00 0.00 0.00 4.40
3221 3397 5.464057 TCGAAGAAACATCTAAAACGAAGCA 59.536 36.000 0.00 0.00 0.00 3.91
3222 3398 5.912528 TCGAAGAAACATCTAAAACGAAGC 58.087 37.500 0.00 0.00 0.00 3.86
3223 3399 7.106663 ACTCGAAGAAACATCTAAAACGAAG 57.893 36.000 0.00 0.00 34.09 3.79
3224 3400 7.473027 AACTCGAAGAAACATCTAAAACGAA 57.527 32.000 0.00 0.00 34.09 3.85
3225 3401 7.473027 AAACTCGAAGAAACATCTAAAACGA 57.527 32.000 0.00 0.00 34.09 3.85
3226 3402 8.543071 AAAAACTCGAAGAAACATCTAAAACG 57.457 30.769 0.00 0.00 34.09 3.60
3252 3428 9.158233 CCTAACAAAACTCGAAGGAACATATAA 57.842 33.333 0.00 0.00 0.00 0.98
3253 3429 8.533657 TCCTAACAAAACTCGAAGGAACATATA 58.466 33.333 0.00 0.00 30.34 0.86
3254 3430 7.391620 TCCTAACAAAACTCGAAGGAACATAT 58.608 34.615 0.00 0.00 30.34 1.78
3255 3431 6.761312 TCCTAACAAAACTCGAAGGAACATA 58.239 36.000 0.00 0.00 30.34 2.29
3256 3432 5.617252 TCCTAACAAAACTCGAAGGAACAT 58.383 37.500 0.00 0.00 30.34 2.71
3257 3433 5.026038 TCCTAACAAAACTCGAAGGAACA 57.974 39.130 0.00 0.00 30.34 3.18
3258 3434 6.555812 AATCCTAACAAAACTCGAAGGAAC 57.444 37.500 2.52 0.00 36.75 3.62
3259 3435 6.544564 ACAAATCCTAACAAAACTCGAAGGAA 59.455 34.615 2.52 0.00 36.75 3.36
3260 3436 6.017440 CACAAATCCTAACAAAACTCGAAGGA 60.017 38.462 0.92 0.92 37.52 3.36
3261 3437 6.142817 CACAAATCCTAACAAAACTCGAAGG 58.857 40.000 0.00 0.00 0.00 3.46
3262 3438 6.725246 ACACAAATCCTAACAAAACTCGAAG 58.275 36.000 0.00 0.00 0.00 3.79
3263 3439 6.238538 GGACACAAATCCTAACAAAACTCGAA 60.239 38.462 0.00 0.00 35.68 3.71
3264 3440 5.237779 GGACACAAATCCTAACAAAACTCGA 59.762 40.000 0.00 0.00 35.68 4.04
3265 3441 5.449304 GGACACAAATCCTAACAAAACTCG 58.551 41.667 0.00 0.00 35.68 4.18
3277 3453 4.821805 TCTTTCTGAACAGGACACAAATCC 59.178 41.667 1.93 0.00 39.28 3.01
3278 3454 5.278022 GGTCTTTCTGAACAGGACACAAATC 60.278 44.000 14.70 0.00 31.33 2.17
3279 3455 4.580580 GGTCTTTCTGAACAGGACACAAAT 59.419 41.667 14.70 0.00 31.33 2.32
3280 3456 3.945285 GGTCTTTCTGAACAGGACACAAA 59.055 43.478 14.70 0.00 31.33 2.83
3281 3457 3.054728 TGGTCTTTCTGAACAGGACACAA 60.055 43.478 14.70 3.16 37.49 3.33
3282 3458 2.503765 TGGTCTTTCTGAACAGGACACA 59.496 45.455 14.70 9.79 37.49 3.72
3283 3459 3.194005 TGGTCTTTCTGAACAGGACAC 57.806 47.619 14.70 8.18 37.49 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.