Multiple sequence alignment - TraesCS7D01G042700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G042700 chr7D 100.000 2486 0 0 1 2486 21853494 21851009 0.000000e+00 4591.0
1 TraesCS7D01G042700 chr7D 85.078 516 57 6 1030 1538 21122449 21122951 2.210000e-140 508.0
2 TraesCS7D01G042700 chr7D 85.078 516 57 6 1030 1538 21485166 21484664 2.210000e-140 508.0
3 TraesCS7D01G042700 chr7D 81.204 548 87 13 949 1494 21898832 21898299 6.350000e-116 427.0
4 TraesCS7D01G042700 chr7D 84.197 386 55 6 1115 1494 21842288 21841903 1.090000e-98 370.0
5 TraesCS7D01G042700 chr7D 96.154 156 6 0 2331 2486 17338799 17338644 3.170000e-64 255.0
6 TraesCS7D01G042700 chr7D 91.791 134 11 0 2244 2377 54012181 54012314 1.170000e-43 187.0
7 TraesCS7D01G042700 chr7D 87.356 87 10 1 1 86 578820790 578820704 5.660000e-17 99.0
8 TraesCS7D01G042700 chr7D 86.207 87 11 1 1 86 579044203 579044117 2.630000e-15 93.5
9 TraesCS7D01G042700 chr7A 94.892 1018 38 8 1033 2041 21609422 21610434 0.000000e+00 1580.0
10 TraesCS7D01G042700 chr7A 95.159 661 29 1 1033 1693 22018090 22018747 0.000000e+00 1040.0
11 TraesCS7D01G042700 chr7A 85.395 582 65 9 789 1356 22374433 22373858 9.910000e-164 586.0
12 TraesCS7D01G042700 chr7A 86.990 515 60 4 1030 1538 21958235 21957722 7.710000e-160 573.0
13 TraesCS7D01G042700 chr7A 87.292 480 55 3 1030 1503 21711837 21711358 6.050000e-151 544.0
14 TraesCS7D01G042700 chr7A 93.472 337 12 6 1692 2019 22020185 22020520 2.220000e-135 492.0
15 TraesCS7D01G042700 chr7A 83.585 463 53 9 202 651 22375045 22374593 1.780000e-111 412.0
16 TraesCS7D01G042700 chr7A 77.347 490 56 32 1682 2128 21957586 21957109 3.200000e-59 239.0
17 TraesCS7D01G042700 chr7A 84.713 157 3 2 2092 2243 22020852 22020992 1.200000e-28 137.0
18 TraesCS7D01G042700 chr7A 91.111 90 3 1 2082 2166 21610926 21611015 1.560000e-22 117.0
19 TraesCS7D01G042700 chr7A 100.000 45 0 0 2167 2211 21611000 21611044 1.580000e-12 84.2
20 TraesCS7D01G042700 chr7A 100.000 32 0 0 650 681 22374526 22374495 2.670000e-05 60.2
21 TraesCS7D01G042700 chr4A 86.990 515 61 3 1030 1538 669044478 669044992 2.140000e-160 575.0
22 TraesCS7D01G042700 chr4A 83.645 428 60 8 1030 1455 712734571 712734990 6.440000e-106 394.0
23 TraesCS7D01G042700 chr4A 78.689 488 87 15 1001 1483 704392427 704391952 2.400000e-80 309.0
24 TraesCS7D01G042700 chr4A 77.668 506 58 34 1682 2152 669045123 669045608 8.820000e-65 257.0
25 TraesCS7D01G042700 chr6D 93.249 237 15 1 2250 2486 455718009 455717774 5.090000e-92 348.0
26 TraesCS7D01G042700 chr6D 85.227 88 12 1 1 87 188316265 188316178 3.410000e-14 89.8
27 TraesCS7D01G042700 chrUn 91.358 243 21 0 2244 2486 95644207 95644449 1.420000e-87 333.0
28 TraesCS7D01G042700 chr3D 91.561 237 20 0 2250 2486 5403628 5403392 6.630000e-86 327.0
29 TraesCS7D01G042700 chr3D 90.535 243 22 1 2244 2486 2942785 2943026 1.110000e-83 320.0
30 TraesCS7D01G042700 chr3D 85.227 264 19 3 2243 2486 595914616 595914353 1.140000e-63 254.0
31 TraesCS7D01G042700 chr5D 90.870 230 20 1 2241 2470 370855236 370855464 8.640000e-80 307.0
32 TraesCS7D01G042700 chr5D 88.462 78 8 1 5 81 97985329 97985406 2.630000e-15 93.5
33 TraesCS7D01G042700 chr4D 89.641 251 12 2 2250 2486 449873789 449873539 8.640000e-80 307.0
34 TraesCS7D01G042700 chr2D 94.872 156 8 0 2331 2486 95219034 95219189 6.870000e-61 244.0
35 TraesCS7D01G042700 chr1D 85.232 237 13 4 2250 2486 289588223 289588009 8.950000e-55 224.0
36 TraesCS7D01G042700 chr2B 87.850 107 12 1 2233 2339 57917756 57917861 9.340000e-25 124.0
37 TraesCS7D01G042700 chr3B 75.309 243 46 11 2243 2480 739351294 739351527 1.220000e-18 104.0
38 TraesCS7D01G042700 chr3B 86.250 80 9 2 8 86 222179603 222179681 4.410000e-13 86.1
39 TraesCS7D01G042700 chr3A 85.227 88 12 1 1 87 588516621 588516534 3.410000e-14 89.8
40 TraesCS7D01G042700 chr3A 83.908 87 13 1 1 86 750258268 750258182 5.700000e-12 82.4
41 TraesCS7D01G042700 chr1B 86.250 80 10 1 8 86 52638773 52638694 4.410000e-13 86.1
42 TraesCS7D01G042700 chr2A 85.897 78 10 1 10 86 66575031 66575108 5.700000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G042700 chr7D 21851009 21853494 2485 True 4591.000000 4591 100.000000 1 2486 1 chr7D.!!$R4 2485
1 TraesCS7D01G042700 chr7D 21122449 21122951 502 False 508.000000 508 85.078000 1030 1538 1 chr7D.!!$F1 508
2 TraesCS7D01G042700 chr7D 21484664 21485166 502 True 508.000000 508 85.078000 1030 1538 1 chr7D.!!$R2 508
3 TraesCS7D01G042700 chr7D 21898299 21898832 533 True 427.000000 427 81.204000 949 1494 1 chr7D.!!$R5 545
4 TraesCS7D01G042700 chr7A 21609422 21611044 1622 False 593.733333 1580 95.334333 1033 2211 3 chr7A.!!$F1 1178
5 TraesCS7D01G042700 chr7A 22018090 22020992 2902 False 556.333333 1040 91.114667 1033 2243 3 chr7A.!!$F2 1210
6 TraesCS7D01G042700 chr7A 21957109 21958235 1126 True 406.000000 573 82.168500 1030 2128 2 chr7A.!!$R2 1098
7 TraesCS7D01G042700 chr7A 22373858 22375045 1187 True 352.733333 586 89.660000 202 1356 3 chr7A.!!$R3 1154
8 TraesCS7D01G042700 chr4A 669044478 669045608 1130 False 416.000000 575 82.329000 1030 2152 2 chr4A.!!$F2 1122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 959 0.031994 CCAAAACCAGCAACGGAAGG 59.968 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2395 4495 0.101939 GAACACCGTCGGGATAGGTC 59.898 60.0 17.28 6.89 35.85 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.268687 CACTTGAGTGTCGCTCCC 57.731 61.111 10.87 0.00 43.48 4.30
25 26 1.668294 CACTTGAGTGTCGCTCCCT 59.332 57.895 10.87 0.00 43.48 4.20
26 27 0.034059 CACTTGAGTGTCGCTCCCTT 59.966 55.000 10.87 0.00 43.48 3.95
27 28 0.318762 ACTTGAGTGTCGCTCCCTTC 59.681 55.000 10.87 0.00 43.48 3.46
28 29 0.390472 CTTGAGTGTCGCTCCCTTCC 60.390 60.000 10.87 0.00 43.48 3.46
29 30 0.832135 TTGAGTGTCGCTCCCTTCCT 60.832 55.000 10.87 0.00 43.48 3.36
30 31 1.216710 GAGTGTCGCTCCCTTCCTG 59.783 63.158 1.65 0.00 38.27 3.86
31 32 1.228894 AGTGTCGCTCCCTTCCTGA 60.229 57.895 0.00 0.00 0.00 3.86
32 33 0.832135 AGTGTCGCTCCCTTCCTGAA 60.832 55.000 0.00 0.00 0.00 3.02
33 34 0.390472 GTGTCGCTCCCTTCCTGAAG 60.390 60.000 0.00 0.00 38.14 3.02
45 46 4.691860 CTTCCTGAAGGTGTTGCTATTG 57.308 45.455 0.00 0.00 34.87 1.90
46 47 4.326826 CTTCCTGAAGGTGTTGCTATTGA 58.673 43.478 0.00 0.00 34.87 2.57
47 48 4.365514 TCCTGAAGGTGTTGCTATTGAA 57.634 40.909 0.00 0.00 36.34 2.69
48 49 4.326826 TCCTGAAGGTGTTGCTATTGAAG 58.673 43.478 0.00 0.00 36.34 3.02
49 50 4.041567 TCCTGAAGGTGTTGCTATTGAAGA 59.958 41.667 0.00 0.00 36.34 2.87
50 51 4.761739 CCTGAAGGTGTTGCTATTGAAGAA 59.238 41.667 0.00 0.00 0.00 2.52
51 52 5.335191 CCTGAAGGTGTTGCTATTGAAGAAC 60.335 44.000 0.00 0.00 0.00 3.01
52 53 5.376625 TGAAGGTGTTGCTATTGAAGAACT 58.623 37.500 0.00 0.00 0.00 3.01
53 54 5.470098 TGAAGGTGTTGCTATTGAAGAACTC 59.530 40.000 0.00 0.00 0.00 3.01
54 55 3.997021 AGGTGTTGCTATTGAAGAACTCG 59.003 43.478 0.00 0.00 0.00 4.18
55 56 3.125316 GGTGTTGCTATTGAAGAACTCGG 59.875 47.826 0.00 0.00 0.00 4.63
56 57 2.742053 TGTTGCTATTGAAGAACTCGGC 59.258 45.455 0.00 0.00 0.00 5.54
57 58 1.640428 TGCTATTGAAGAACTCGGCG 58.360 50.000 0.00 0.00 0.00 6.46
58 59 1.203758 TGCTATTGAAGAACTCGGCGA 59.796 47.619 10.14 10.14 0.00 5.54
59 60 1.588861 GCTATTGAAGAACTCGGCGAC 59.411 52.381 4.99 0.00 0.00 5.19
60 61 2.194271 CTATTGAAGAACTCGGCGACC 58.806 52.381 4.99 0.00 0.00 4.79
72 73 4.760047 GCGACCGTGTGATGCCCT 62.760 66.667 0.00 0.00 0.00 5.19
73 74 2.815211 CGACCGTGTGATGCCCTG 60.815 66.667 0.00 0.00 0.00 4.45
74 75 2.662596 GACCGTGTGATGCCCTGA 59.337 61.111 0.00 0.00 0.00 3.86
75 76 1.448540 GACCGTGTGATGCCCTGAG 60.449 63.158 0.00 0.00 0.00 3.35
76 77 1.888436 GACCGTGTGATGCCCTGAGA 61.888 60.000 0.00 0.00 0.00 3.27
77 78 1.267574 ACCGTGTGATGCCCTGAGAT 61.268 55.000 0.00 0.00 0.00 2.75
78 79 0.812811 CCGTGTGATGCCCTGAGATG 60.813 60.000 0.00 0.00 0.00 2.90
79 80 0.812811 CGTGTGATGCCCTGAGATGG 60.813 60.000 0.00 0.00 0.00 3.51
80 81 0.254178 GTGTGATGCCCTGAGATGGT 59.746 55.000 0.00 0.00 0.00 3.55
81 82 0.994247 TGTGATGCCCTGAGATGGTT 59.006 50.000 0.00 0.00 0.00 3.67
82 83 1.340308 TGTGATGCCCTGAGATGGTTG 60.340 52.381 0.00 0.00 0.00 3.77
83 84 0.256752 TGATGCCCTGAGATGGTTGG 59.743 55.000 0.00 0.00 0.00 3.77
84 85 0.257039 GATGCCCTGAGATGGTTGGT 59.743 55.000 0.00 0.00 0.00 3.67
85 86 0.033796 ATGCCCTGAGATGGTTGGTG 60.034 55.000 0.00 0.00 0.00 4.17
86 87 1.380302 GCCCTGAGATGGTTGGTGT 59.620 57.895 0.00 0.00 0.00 4.16
87 88 0.962356 GCCCTGAGATGGTTGGTGTG 60.962 60.000 0.00 0.00 0.00 3.82
88 89 0.322816 CCCTGAGATGGTTGGTGTGG 60.323 60.000 0.00 0.00 0.00 4.17
89 90 0.401738 CCTGAGATGGTTGGTGTGGT 59.598 55.000 0.00 0.00 0.00 4.16
90 91 1.527034 CTGAGATGGTTGGTGTGGTG 58.473 55.000 0.00 0.00 0.00 4.17
91 92 0.537143 TGAGATGGTTGGTGTGGTGC 60.537 55.000 0.00 0.00 0.00 5.01
92 93 1.228552 AGATGGTTGGTGTGGTGCC 60.229 57.895 0.00 0.00 0.00 5.01
93 94 2.597217 ATGGTTGGTGTGGTGCCG 60.597 61.111 0.00 0.00 0.00 5.69
94 95 3.429372 ATGGTTGGTGTGGTGCCGT 62.429 57.895 0.00 0.00 0.00 5.68
95 96 3.591835 GGTTGGTGTGGTGCCGTG 61.592 66.667 0.00 0.00 0.00 4.94
96 97 2.515057 GTTGGTGTGGTGCCGTGA 60.515 61.111 0.00 0.00 0.00 4.35
97 98 1.896660 GTTGGTGTGGTGCCGTGAT 60.897 57.895 0.00 0.00 0.00 3.06
98 99 1.599518 TTGGTGTGGTGCCGTGATC 60.600 57.895 0.00 0.00 0.00 2.92
99 100 2.746277 GGTGTGGTGCCGTGATCC 60.746 66.667 0.00 0.00 0.00 3.36
100 101 2.347490 GTGTGGTGCCGTGATCCT 59.653 61.111 0.00 0.00 0.00 3.24
101 102 1.302511 GTGTGGTGCCGTGATCCTT 60.303 57.895 0.00 0.00 0.00 3.36
102 103 1.003839 TGTGGTGCCGTGATCCTTC 60.004 57.895 0.00 0.00 0.00 3.46
103 104 1.296715 GTGGTGCCGTGATCCTTCT 59.703 57.895 0.00 0.00 0.00 2.85
104 105 1.021390 GTGGTGCCGTGATCCTTCTG 61.021 60.000 0.00 0.00 0.00 3.02
105 106 1.191489 TGGTGCCGTGATCCTTCTGA 61.191 55.000 0.00 0.00 0.00 3.27
106 107 0.179000 GGTGCCGTGATCCTTCTGAT 59.821 55.000 0.00 0.00 36.01 2.90
107 108 1.407437 GGTGCCGTGATCCTTCTGATT 60.407 52.381 0.00 0.00 32.41 2.57
108 109 2.359900 GTGCCGTGATCCTTCTGATTT 58.640 47.619 0.00 0.00 32.41 2.17
109 110 2.352960 GTGCCGTGATCCTTCTGATTTC 59.647 50.000 0.00 0.00 32.41 2.17
110 111 1.943340 GCCGTGATCCTTCTGATTTCC 59.057 52.381 0.00 0.00 32.41 3.13
111 112 2.420687 GCCGTGATCCTTCTGATTTCCT 60.421 50.000 0.00 0.00 32.41 3.36
112 113 3.878778 CCGTGATCCTTCTGATTTCCTT 58.121 45.455 0.00 0.00 32.41 3.36
113 114 4.265073 CCGTGATCCTTCTGATTTCCTTT 58.735 43.478 0.00 0.00 32.41 3.11
114 115 4.702131 CCGTGATCCTTCTGATTTCCTTTT 59.298 41.667 0.00 0.00 32.41 2.27
115 116 5.183904 CCGTGATCCTTCTGATTTCCTTTTT 59.816 40.000 0.00 0.00 32.41 1.94
137 138 5.784578 TTTCTCGCCTATGTATAGCTTCA 57.215 39.130 0.00 0.00 0.00 3.02
138 139 5.378292 TTCTCGCCTATGTATAGCTTCAG 57.622 43.478 0.00 0.00 0.00 3.02
139 140 4.399219 TCTCGCCTATGTATAGCTTCAGT 58.601 43.478 0.00 0.00 0.00 3.41
140 141 4.456222 TCTCGCCTATGTATAGCTTCAGTC 59.544 45.833 0.00 0.00 0.00 3.51
141 142 4.399219 TCGCCTATGTATAGCTTCAGTCT 58.601 43.478 0.00 0.00 0.00 3.24
142 143 4.827835 TCGCCTATGTATAGCTTCAGTCTT 59.172 41.667 0.00 0.00 0.00 3.01
143 144 6.002082 TCGCCTATGTATAGCTTCAGTCTTA 58.998 40.000 0.00 0.00 0.00 2.10
144 145 6.659668 TCGCCTATGTATAGCTTCAGTCTTAT 59.340 38.462 0.00 0.00 0.00 1.73
145 146 7.827729 TCGCCTATGTATAGCTTCAGTCTTATA 59.172 37.037 0.00 0.00 0.00 0.98
146 147 8.625651 CGCCTATGTATAGCTTCAGTCTTATAT 58.374 37.037 0.00 0.00 0.00 0.86
173 174 6.992063 AGGACTTTACTATTTGCTGACATG 57.008 37.500 0.00 0.00 0.00 3.21
174 175 6.476378 AGGACTTTACTATTTGCTGACATGT 58.524 36.000 0.00 0.00 0.00 3.21
175 176 6.942576 AGGACTTTACTATTTGCTGACATGTT 59.057 34.615 0.00 0.00 0.00 2.71
176 177 7.448469 AGGACTTTACTATTTGCTGACATGTTT 59.552 33.333 0.00 0.00 0.00 2.83
177 178 8.082242 GGACTTTACTATTTGCTGACATGTTTT 58.918 33.333 0.00 0.00 0.00 2.43
178 179 9.463443 GACTTTACTATTTGCTGACATGTTTTT 57.537 29.630 0.00 0.00 0.00 1.94
179 180 9.248291 ACTTTACTATTTGCTGACATGTTTTTG 57.752 29.630 0.00 0.00 0.00 2.44
180 181 8.586570 TTTACTATTTGCTGACATGTTTTTGG 57.413 30.769 0.00 0.00 0.00 3.28
181 182 5.540911 ACTATTTGCTGACATGTTTTTGGG 58.459 37.500 0.00 0.00 0.00 4.12
182 183 3.902881 TTTGCTGACATGTTTTTGGGT 57.097 38.095 0.00 0.00 0.00 4.51
183 184 2.886862 TGCTGACATGTTTTTGGGTG 57.113 45.000 0.00 0.00 0.00 4.61
184 185 2.106566 TGCTGACATGTTTTTGGGTGT 58.893 42.857 0.00 0.00 0.00 4.16
185 186 2.159128 TGCTGACATGTTTTTGGGTGTG 60.159 45.455 0.00 0.00 0.00 3.82
186 187 2.159114 GCTGACATGTTTTTGGGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
187 188 3.067461 GCTGACATGTTTTTGGGTGTGTA 59.933 43.478 0.00 0.00 0.00 2.90
188 189 4.261994 GCTGACATGTTTTTGGGTGTGTAT 60.262 41.667 0.00 0.00 0.00 2.29
189 190 5.193663 TGACATGTTTTTGGGTGTGTATG 57.806 39.130 0.00 0.00 0.00 2.39
190 191 3.987220 GACATGTTTTTGGGTGTGTATGC 59.013 43.478 0.00 0.00 0.00 3.14
191 192 3.640967 ACATGTTTTTGGGTGTGTATGCT 59.359 39.130 0.00 0.00 0.00 3.79
192 193 3.724508 TGTTTTTGGGTGTGTATGCTG 57.275 42.857 0.00 0.00 0.00 4.41
193 194 2.363680 TGTTTTTGGGTGTGTATGCTGG 59.636 45.455 0.00 0.00 0.00 4.85
194 195 2.364002 GTTTTTGGGTGTGTATGCTGGT 59.636 45.455 0.00 0.00 0.00 4.00
195 196 3.510531 TTTTGGGTGTGTATGCTGGTA 57.489 42.857 0.00 0.00 0.00 3.25
196 197 3.730215 TTTGGGTGTGTATGCTGGTAT 57.270 42.857 0.00 0.00 0.00 2.73
197 198 3.730215 TTGGGTGTGTATGCTGGTATT 57.270 42.857 0.00 0.00 0.00 1.89
198 199 2.997980 TGGGTGTGTATGCTGGTATTG 58.002 47.619 0.00 0.00 0.00 1.90
199 200 2.297701 GGGTGTGTATGCTGGTATTGG 58.702 52.381 0.00 0.00 0.00 3.16
200 201 1.676006 GGTGTGTATGCTGGTATTGGC 59.324 52.381 0.00 0.00 0.00 4.52
206 207 5.071115 TGTGTATGCTGGTATTGGCTATGTA 59.929 40.000 0.00 0.00 0.00 2.29
207 208 6.173339 GTGTATGCTGGTATTGGCTATGTAT 58.827 40.000 0.00 0.00 0.00 2.29
214 215 7.401782 TGCTGGTATTGGCTATGTATATCCTAA 59.598 37.037 0.00 0.00 0.00 2.69
215 216 8.432805 GCTGGTATTGGCTATGTATATCCTAAT 58.567 37.037 0.00 0.00 0.00 1.73
229 230 8.762645 TGTATATCCTAATTATGAAGAGGCTGG 58.237 37.037 0.00 0.00 0.00 4.85
230 231 4.982241 TCCTAATTATGAAGAGGCTGGG 57.018 45.455 0.00 0.00 0.00 4.45
232 233 4.348168 TCCTAATTATGAAGAGGCTGGGTC 59.652 45.833 0.00 0.00 0.00 4.46
237 238 0.687354 TGAAGAGGCTGGGTCTGTTC 59.313 55.000 0.00 2.72 37.92 3.18
239 240 1.280421 GAAGAGGCTGGGTCTGTTCAT 59.720 52.381 0.00 0.00 37.47 2.57
253 254 7.120579 TGGGTCTGTTCATATTGTGTTTGTATC 59.879 37.037 0.00 0.00 0.00 2.24
254 255 7.415206 GGGTCTGTTCATATTGTGTTTGTATCC 60.415 40.741 0.00 0.00 0.00 2.59
263 264 9.383519 CATATTGTGTTTGTATCCTCTTAGTGT 57.616 33.333 0.00 0.00 0.00 3.55
265 266 7.490962 TTGTGTTTGTATCCTCTTAGTGTTG 57.509 36.000 0.00 0.00 0.00 3.33
269 270 9.216117 GTGTTTGTATCCTCTTAGTGTTGTATT 57.784 33.333 0.00 0.00 0.00 1.89
333 334 4.006989 TGTTGGTTAGATCAAATCCACCG 58.993 43.478 0.00 0.00 36.41 4.94
378 379 4.027702 GTGCAAAGCTAACTCAAACAAACG 60.028 41.667 0.00 0.00 0.00 3.60
406 415 2.626088 GCTTCATGCTTGAACTGACC 57.374 50.000 10.76 0.00 36.94 4.02
407 416 1.135859 GCTTCATGCTTGAACTGACCG 60.136 52.381 10.76 2.42 36.94 4.79
419 428 5.862678 TGAACTGACCGATTGTATGGATA 57.137 39.130 0.00 0.00 0.00 2.59
421 430 6.455647 TGAACTGACCGATTGTATGGATATC 58.544 40.000 0.00 0.00 0.00 1.63
423 432 4.765339 ACTGACCGATTGTATGGATATCGA 59.235 41.667 0.00 0.00 42.70 3.59
424 433 5.419155 ACTGACCGATTGTATGGATATCGAT 59.581 40.000 2.16 2.16 42.70 3.59
425 434 6.602009 ACTGACCGATTGTATGGATATCGATA 59.398 38.462 7.75 7.75 42.70 2.92
440 450 6.128902 GGATATCGATAAAAACTCGCGTCAAT 60.129 38.462 9.61 0.00 36.11 2.57
462 472 1.139163 GGCGAACGTAAGAACCGAAA 58.861 50.000 0.00 0.00 43.62 3.46
471 481 3.431233 CGTAAGAACCGAAAAGGAAGACC 59.569 47.826 0.00 0.00 41.67 3.85
517 529 6.048732 TCAAACCTTTTCTTTTGCTTCCTT 57.951 33.333 0.00 0.00 33.50 3.36
526 538 5.159273 TCTTTTGCTTCCTTTTGTTTGGT 57.841 34.783 0.00 0.00 0.00 3.67
527 539 6.287589 TCTTTTGCTTCCTTTTGTTTGGTA 57.712 33.333 0.00 0.00 0.00 3.25
528 540 6.883744 TCTTTTGCTTCCTTTTGTTTGGTAT 58.116 32.000 0.00 0.00 0.00 2.73
529 541 8.012957 TCTTTTGCTTCCTTTTGTTTGGTATA 57.987 30.769 0.00 0.00 0.00 1.47
530 542 8.646900 TCTTTTGCTTCCTTTTGTTTGGTATAT 58.353 29.630 0.00 0.00 0.00 0.86
531 543 9.921637 CTTTTGCTTCCTTTTGTTTGGTATATA 57.078 29.630 0.00 0.00 0.00 0.86
532 544 9.699703 TTTTGCTTCCTTTTGTTTGGTATATAC 57.300 29.630 4.14 4.14 0.00 1.47
533 545 8.410673 TTGCTTCCTTTTGTTTGGTATATACA 57.589 30.769 14.70 0.00 0.00 2.29
534 546 8.050778 TGCTTCCTTTTGTTTGGTATATACAG 57.949 34.615 14.70 1.07 0.00 2.74
535 547 7.668052 TGCTTCCTTTTGTTTGGTATATACAGT 59.332 33.333 14.70 0.00 0.00 3.55
558 570 7.279313 CAGTACAATGTTTACAGGGGTATGTAC 59.721 40.741 0.00 0.00 39.25 2.90
559 571 5.503002 ACAATGTTTACAGGGGTATGTACC 58.497 41.667 0.40 0.40 45.71 3.34
560 572 5.252164 ACAATGTTTACAGGGGTATGTACCT 59.748 40.000 8.97 0.00 45.72 3.08
561 573 6.184789 CAATGTTTACAGGGGTATGTACCTT 58.815 40.000 8.97 0.00 45.72 3.50
592 606 2.870372 GCCAACACAAGCTAGGCG 59.130 61.111 0.00 0.00 35.42 5.52
598 612 0.036010 ACACAAGCTAGGCGAATGCT 60.036 50.000 0.00 0.00 42.25 3.79
615 629 0.817229 GCTGGCTTGAGGATGTAGGC 60.817 60.000 0.00 0.00 35.25 3.93
618 632 0.811616 GGCTTGAGGATGTAGGCGTG 60.812 60.000 0.00 0.00 0.00 5.34
629 643 1.047034 GTAGGCGTGGTCTATGGGGT 61.047 60.000 0.00 0.00 0.00 4.95
643 657 3.149038 GGGTCTCCCTTATCGGCC 58.851 66.667 0.00 0.00 41.34 6.13
688 770 1.426621 TCGTACTCGATCGGTGTGC 59.573 57.895 16.41 15.96 41.35 4.57
699 781 4.319249 GGTGTGCCGCAAAAGTTC 57.681 55.556 0.00 0.00 0.00 3.01
700 782 1.657181 GGTGTGCCGCAAAAGTTCG 60.657 57.895 0.00 0.00 0.00 3.95
701 783 2.025441 TGTGCCGCAAAAGTTCGC 59.975 55.556 0.00 0.00 0.00 4.70
707 789 3.424326 CGCAAAAGTTCGCGTACAA 57.576 47.368 18.30 0.00 46.23 2.41
708 790 1.732528 CGCAAAAGTTCGCGTACAAA 58.267 45.000 18.30 0.00 46.23 2.83
709 791 2.303537 CGCAAAAGTTCGCGTACAAAT 58.696 42.857 18.30 0.98 46.23 2.32
710 792 2.717011 CGCAAAAGTTCGCGTACAAATT 59.283 40.909 18.30 7.13 46.23 1.82
711 793 3.418646 CGCAAAAGTTCGCGTACAAATTG 60.419 43.478 18.30 17.80 46.23 2.32
712 794 3.484285 GCAAAAGTTCGCGTACAAATTGT 59.516 39.130 18.30 3.43 0.00 2.71
713 795 4.602957 GCAAAAGTTCGCGTACAAATTGTG 60.603 41.667 18.30 11.17 0.00 3.33
714 796 2.309898 AGTTCGCGTACAAATTGTGC 57.690 45.000 18.30 6.50 0.00 4.57
715 797 1.069500 AGTTCGCGTACAAATTGTGCC 60.069 47.619 18.30 1.17 28.65 5.01
716 798 0.238817 TTCGCGTACAAATTGTGCCC 59.761 50.000 9.15 0.00 28.65 5.36
717 799 0.885150 TCGCGTACAAATTGTGCCCA 60.885 50.000 9.15 0.00 28.65 5.36
718 800 0.170116 CGCGTACAAATTGTGCCCAT 59.830 50.000 9.15 0.00 28.65 4.00
719 801 1.398739 CGCGTACAAATTGTGCCCATA 59.601 47.619 9.15 0.00 28.65 2.74
720 802 2.789779 CGCGTACAAATTGTGCCCATAC 60.790 50.000 9.15 0.00 28.65 2.39
721 803 2.162608 GCGTACAAATTGTGCCCATACA 59.837 45.455 9.15 0.00 28.65 2.29
722 804 3.181491 GCGTACAAATTGTGCCCATACAT 60.181 43.478 9.15 0.00 28.65 2.29
723 805 4.035792 GCGTACAAATTGTGCCCATACATA 59.964 41.667 9.15 0.00 28.65 2.29
724 806 5.507077 CGTACAAATTGTGCCCATACATAC 58.493 41.667 9.15 0.00 28.65 2.39
725 807 5.295787 CGTACAAATTGTGCCCATACATACT 59.704 40.000 9.15 0.00 28.65 2.12
754 836 1.885388 CCGTGTGGAGCGTGACAAA 60.885 57.895 0.00 0.00 37.49 2.83
759 841 1.014352 GTGGAGCGTGACAAAGTGTT 58.986 50.000 0.00 0.00 0.00 3.32
773 855 1.961277 GTGTTGTGCCGAGTCCAGG 60.961 63.158 0.00 0.00 0.00 4.45
774 856 2.426023 GTTGTGCCGAGTCCAGGT 59.574 61.111 0.00 0.00 0.00 4.00
775 857 1.961277 GTTGTGCCGAGTCCAGGTG 60.961 63.158 0.00 0.00 0.00 4.00
776 858 2.137528 TTGTGCCGAGTCCAGGTGA 61.138 57.895 0.00 0.00 0.00 4.02
777 859 1.480212 TTGTGCCGAGTCCAGGTGAT 61.480 55.000 0.00 0.00 0.00 3.06
778 860 0.613572 TGTGCCGAGTCCAGGTGATA 60.614 55.000 0.00 0.00 0.00 2.15
779 861 0.179108 GTGCCGAGTCCAGGTGATAC 60.179 60.000 0.00 0.00 0.00 2.24
780 862 1.065928 GCCGAGTCCAGGTGATACG 59.934 63.158 0.00 0.00 0.00 3.06
781 863 1.065928 CCGAGTCCAGGTGATACGC 59.934 63.158 0.00 0.00 0.00 4.42
782 864 1.298413 CGAGTCCAGGTGATACGCG 60.298 63.158 3.53 3.53 0.00 6.01
783 865 1.807886 GAGTCCAGGTGATACGCGT 59.192 57.895 19.17 19.17 0.00 6.01
784 866 0.525668 GAGTCCAGGTGATACGCGTG 60.526 60.000 24.59 2.24 0.00 5.34
785 867 0.963856 AGTCCAGGTGATACGCGTGA 60.964 55.000 24.59 4.53 32.45 4.35
786 868 0.801067 GTCCAGGTGATACGCGTGAC 60.801 60.000 24.59 14.12 32.45 3.67
787 869 1.214325 CCAGGTGATACGCGTGACA 59.786 57.895 24.59 18.49 32.45 3.58
820 902 1.765230 AGTAGGAGACTTGGCTACGG 58.235 55.000 0.00 0.00 43.67 4.02
821 903 0.745468 GTAGGAGACTTGGCTACGGG 59.255 60.000 0.00 0.00 43.67 5.28
822 904 0.627451 TAGGAGACTTGGCTACGGGA 59.373 55.000 0.00 0.00 43.67 5.14
847 929 3.830755 GGCCCCTCTTCGTTATATAGTCA 59.169 47.826 0.00 0.00 0.00 3.41
848 930 4.282703 GGCCCCTCTTCGTTATATAGTCAA 59.717 45.833 0.00 0.00 0.00 3.18
850 932 5.221382 GCCCCTCTTCGTTATATAGTCAACA 60.221 44.000 0.00 0.00 0.00 3.33
851 933 6.684613 GCCCCTCTTCGTTATATAGTCAACAA 60.685 42.308 0.00 0.00 0.00 2.83
852 934 7.442656 CCCCTCTTCGTTATATAGTCAACAAT 58.557 38.462 0.00 0.00 0.00 2.71
853 935 7.599245 CCCCTCTTCGTTATATAGTCAACAATC 59.401 40.741 0.00 0.00 0.00 2.67
854 936 7.599245 CCCTCTTCGTTATATAGTCAACAATCC 59.401 40.741 0.00 0.00 0.00 3.01
855 937 7.599245 CCTCTTCGTTATATAGTCAACAATCCC 59.401 40.741 0.00 0.00 0.00 3.85
856 938 7.439381 TCTTCGTTATATAGTCAACAATCCCC 58.561 38.462 0.00 0.00 0.00 4.81
873 955 2.733945 CCCCAAAACCAGCAACGG 59.266 61.111 0.00 0.00 0.00 4.44
877 959 0.031994 CCAAAACCAGCAACGGAAGG 59.968 55.000 0.00 0.00 0.00 3.46
882 964 1.452108 CCAGCAACGGAAGGGATCC 60.452 63.158 1.92 1.92 45.57 3.36
895 977 1.658717 GGATCCATCGTCGACTGCG 60.659 63.158 14.70 0.00 39.35 5.18
899 981 2.508891 CCATCGTCGACTGCGCTTC 61.509 63.158 14.70 3.99 37.46 3.86
901 983 1.515088 ATCGTCGACTGCGCTTCTG 60.515 57.895 14.70 2.35 37.46 3.02
902 984 1.923227 ATCGTCGACTGCGCTTCTGA 61.923 55.000 14.70 4.68 37.46 3.27
903 985 2.429351 CGTCGACTGCGCTTCTGAC 61.429 63.158 14.70 14.56 37.46 3.51
904 986 2.126850 TCGACTGCGCTTCTGACG 60.127 61.111 9.73 8.69 37.46 4.35
905 987 2.429236 CGACTGCGCTTCTGACGT 60.429 61.111 9.73 0.00 0.00 4.34
906 988 1.154282 CGACTGCGCTTCTGACGTA 60.154 57.895 9.73 0.00 0.00 3.57
909 991 0.387367 ACTGCGCTTCTGACGTACTG 60.387 55.000 9.73 0.00 0.00 2.74
912 994 1.471287 TGCGCTTCTGACGTACTGTAT 59.529 47.619 9.73 0.00 0.00 2.29
914 996 2.223294 GCGCTTCTGACGTACTGTATCT 60.223 50.000 0.00 0.00 0.00 1.98
922 1014 5.008712 TCTGACGTACTGTATCTAGCAATGG 59.991 44.000 0.00 0.00 0.00 3.16
958 1053 3.206150 GGTTCGATGGACAATATGCTGT 58.794 45.455 0.00 0.00 0.00 4.40
967 1062 1.151668 CAATATGCTGTAGGAGGCGC 58.848 55.000 0.00 0.00 0.00 6.53
1206 1301 4.398673 GCAGAGCTTTTCAAGAAGATGGAT 59.601 41.667 0.00 0.00 0.00 3.41
1350 1445 2.752903 GAGGAGGATTCTCTCGCCTATC 59.247 54.545 0.00 0.00 39.86 2.08
1435 1536 3.350833 GTTCCTGACCAAGATGATGCTT 58.649 45.455 0.00 0.00 0.00 3.91
1531 1633 4.381292 GCCAAATTCAACTCAGAAGATGGG 60.381 45.833 0.00 0.00 37.52 4.00
1651 1784 5.247110 CCCATCTCCTGCTATGTTATACAGT 59.753 44.000 0.00 0.00 0.00 3.55
1652 1785 6.437477 CCCATCTCCTGCTATGTTATACAGTA 59.563 42.308 0.00 0.00 0.00 2.74
1653 1786 7.363355 CCCATCTCCTGCTATGTTATACAGTAG 60.363 44.444 0.00 0.00 0.00 2.57
1820 3419 2.037511 TGTCCGGTAACAATTCGACCTT 59.962 45.455 0.00 0.00 0.00 3.50
1823 3422 4.872124 GTCCGGTAACAATTCGACCTTATT 59.128 41.667 0.00 0.00 0.00 1.40
1826 3425 5.122711 CCGGTAACAATTCGACCTTATTTGT 59.877 40.000 0.00 0.00 32.19 2.83
1891 3490 3.434984 GTCTTCTTCTGCTCAACCATGAC 59.565 47.826 0.00 0.00 0.00 3.06
1982 3606 6.494842 TCGCTTATCTTGTATTGGAAAATGC 58.505 36.000 0.00 0.00 0.00 3.56
2004 3633 9.995003 AATGCTAGTTTTTGGATGACATTTTAA 57.005 25.926 0.00 0.00 0.00 1.52
2048 3685 1.227999 TTTCCTTGCGAACCAGAGCG 61.228 55.000 0.00 0.00 35.87 5.03
2069 3706 2.885113 CGTCCACTGGCGATCTCA 59.115 61.111 6.14 0.00 0.00 3.27
2077 3714 0.033228 CTGGCGATCTCACCATCTCC 59.967 60.000 0.08 0.00 34.82 3.71
2080 3717 1.371022 CGATCTCACCATCTCCGCG 60.371 63.158 0.00 0.00 0.00 6.46
2214 4314 4.209538 TCCTTCATTACCAGCCATGATTG 58.790 43.478 0.00 0.00 29.45 2.67
2220 4320 5.822519 TCATTACCAGCCATGATTGAAGTAC 59.177 40.000 0.00 0.00 0.00 2.73
2243 4343 2.359900 CTGTTTCACCATGGCCTACTC 58.640 52.381 13.04 0.00 0.00 2.59
2244 4344 1.702401 TGTTTCACCATGGCCTACTCA 59.298 47.619 13.04 1.73 0.00 3.41
2245 4345 2.084546 GTTTCACCATGGCCTACTCAC 58.915 52.381 13.04 0.00 0.00 3.51
2246 4346 1.656587 TTCACCATGGCCTACTCACT 58.343 50.000 13.04 0.00 0.00 3.41
2247 4347 1.656587 TCACCATGGCCTACTCACTT 58.343 50.000 13.04 0.00 0.00 3.16
2248 4348 1.985159 TCACCATGGCCTACTCACTTT 59.015 47.619 13.04 0.00 0.00 2.66
2249 4349 2.027192 TCACCATGGCCTACTCACTTTC 60.027 50.000 13.04 0.00 0.00 2.62
2250 4350 1.066143 ACCATGGCCTACTCACTTTCG 60.066 52.381 13.04 0.00 0.00 3.46
2251 4351 1.656652 CATGGCCTACTCACTTTCGG 58.343 55.000 3.32 0.00 0.00 4.30
2252 4352 1.207089 CATGGCCTACTCACTTTCGGA 59.793 52.381 3.32 0.00 0.00 4.55
2253 4353 1.344065 TGGCCTACTCACTTTCGGAA 58.656 50.000 3.32 0.00 0.00 4.30
2254 4354 1.906574 TGGCCTACTCACTTTCGGAAT 59.093 47.619 3.32 0.00 0.00 3.01
2255 4355 2.093658 TGGCCTACTCACTTTCGGAATC 60.094 50.000 3.32 0.00 0.00 2.52
2256 4356 2.194271 GCCTACTCACTTTCGGAATCG 58.806 52.381 0.00 0.00 37.82 3.34
2257 4357 2.194271 CCTACTCACTTTCGGAATCGC 58.806 52.381 0.00 0.00 36.13 4.58
2258 4358 2.416836 CCTACTCACTTTCGGAATCGCA 60.417 50.000 0.00 0.00 36.13 5.10
2259 4359 1.429463 ACTCACTTTCGGAATCGCAC 58.571 50.000 0.00 0.00 36.13 5.34
2260 4360 0.721718 CTCACTTTCGGAATCGCACC 59.278 55.000 0.00 0.00 36.13 5.01
2261 4361 0.672401 TCACTTTCGGAATCGCACCC 60.672 55.000 0.00 0.00 36.13 4.61
2262 4362 0.673644 CACTTTCGGAATCGCACCCT 60.674 55.000 0.00 0.00 36.13 4.34
2263 4363 0.899720 ACTTTCGGAATCGCACCCTA 59.100 50.000 0.00 0.00 36.13 3.53
2264 4364 1.485066 ACTTTCGGAATCGCACCCTAT 59.515 47.619 0.00 0.00 36.13 2.57
2265 4365 1.867233 CTTTCGGAATCGCACCCTATG 59.133 52.381 0.00 0.00 36.13 2.23
2319 4419 3.628989 TGTCGGGACAGGCCTATG 58.371 61.111 3.98 0.00 36.21 2.23
2320 4420 1.305802 TGTCGGGACAGGCCTATGT 60.306 57.895 3.98 0.00 36.21 2.29
2327 4427 1.078426 ACAGGCCTATGTCAACGGC 60.078 57.895 3.98 7.11 43.03 5.68
2330 4430 2.516225 GCCTATGTCAACGGCCCC 60.516 66.667 0.00 0.00 37.86 5.80
2331 4431 2.192175 CCTATGTCAACGGCCCCC 59.808 66.667 0.00 0.00 0.00 5.40
2343 4443 4.476752 GCCCCCGTCCGCAACATA 62.477 66.667 0.00 0.00 0.00 2.29
2344 4444 2.508928 CCCCCGTCCGCAACATAT 59.491 61.111 0.00 0.00 0.00 1.78
2345 4445 1.597027 CCCCCGTCCGCAACATATC 60.597 63.158 0.00 0.00 0.00 1.63
2346 4446 1.597027 CCCCGTCCGCAACATATCC 60.597 63.158 0.00 0.00 0.00 2.59
2347 4447 1.954146 CCCGTCCGCAACATATCCG 60.954 63.158 0.00 0.00 0.00 4.18
2348 4448 1.227147 CCGTCCGCAACATATCCGT 60.227 57.895 0.00 0.00 0.00 4.69
2349 4449 1.213094 CCGTCCGCAACATATCCGTC 61.213 60.000 0.00 0.00 0.00 4.79
2350 4450 1.537289 CGTCCGCAACATATCCGTCG 61.537 60.000 0.00 0.00 0.00 5.12
2351 4451 1.066752 TCCGCAACATATCCGTCGG 59.933 57.895 4.39 4.39 38.34 4.79
2352 4452 2.594962 CCGCAACATATCCGTCGGC 61.595 63.158 6.34 0.00 0.00 5.54
2353 4453 2.927618 CGCAACATATCCGTCGGCG 61.928 63.158 6.34 0.29 36.64 6.46
2354 4454 1.881252 GCAACATATCCGTCGGCGT 60.881 57.895 9.28 0.00 36.15 5.68
2355 4455 0.595567 GCAACATATCCGTCGGCGTA 60.596 55.000 9.28 0.00 36.15 4.42
2356 4456 1.405461 CAACATATCCGTCGGCGTAG 58.595 55.000 9.28 1.66 36.15 3.51
2389 4489 2.540145 GGCATATAAAGGCCGTCGG 58.460 57.895 6.99 6.99 43.74 4.79
2390 4490 1.574702 GGCATATAAAGGCCGTCGGC 61.575 60.000 28.44 28.44 43.74 5.54
2400 4500 4.169271 CCGTCGGCATAGGACCTA 57.831 61.111 3.00 3.00 0.00 3.08
2401 4501 2.654802 CCGTCGGCATAGGACCTAT 58.345 57.895 8.32 8.32 0.00 2.57
2402 4502 0.526662 CCGTCGGCATAGGACCTATC 59.473 60.000 11.33 6.71 0.00 2.08
2403 4503 0.526662 CGTCGGCATAGGACCTATCC 59.473 60.000 11.33 13.70 46.69 2.59
2405 4505 0.611062 TCGGCATAGGACCTATCCCG 60.611 60.000 30.78 30.78 45.92 5.14
2411 4511 3.126528 GGACCTATCCCGACGGTG 58.873 66.667 13.94 4.52 39.39 4.94
2412 4512 1.755783 GGACCTATCCCGACGGTGT 60.756 63.158 13.94 3.19 39.39 4.16
2413 4513 1.325476 GGACCTATCCCGACGGTGTT 61.325 60.000 13.94 2.42 39.39 3.32
2414 4514 0.101939 GACCTATCCCGACGGTGTTC 59.898 60.000 13.94 0.00 0.00 3.18
2415 4515 1.065273 CCTATCCCGACGGTGTTCG 59.935 63.158 13.94 0.00 45.88 3.95
2427 4527 2.124903 CGGTGTTCGTACATCTATGCC 58.875 52.381 3.85 0.00 36.50 4.40
2428 4528 2.124903 GGTGTTCGTACATCTATGCCG 58.875 52.381 0.00 0.00 36.50 5.69
2429 4529 2.124903 GTGTTCGTACATCTATGCCGG 58.875 52.381 0.00 0.00 36.50 6.13
2430 4530 1.137513 GTTCGTACATCTATGCCGGC 58.862 55.000 22.73 22.73 0.00 6.13
2431 4531 0.318360 TTCGTACATCTATGCCGGCG 60.318 55.000 23.90 7.87 0.00 6.46
2432 4532 1.733041 CGTACATCTATGCCGGCGG 60.733 63.158 24.35 24.35 0.00 6.13
2467 4567 4.821177 GTTACCTCCTAACGGCGG 57.179 61.111 13.24 0.00 41.16 6.13
2468 4568 1.520120 GTTACCTCCTAACGGCGGC 60.520 63.158 13.24 0.00 38.84 6.53
2469 4569 2.724273 TTACCTCCTAACGGCGGCC 61.724 63.158 13.24 9.54 38.84 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.216710 CAGGAAGGGAGCGACACTC 59.783 63.158 0.00 0.00 45.45 3.51
13 14 0.832135 TTCAGGAAGGGAGCGACACT 60.832 55.000 0.00 0.00 0.00 3.55
14 15 0.390472 CTTCAGGAAGGGAGCGACAC 60.390 60.000 1.01 0.00 34.87 3.67
15 16 1.975327 CTTCAGGAAGGGAGCGACA 59.025 57.895 1.01 0.00 34.87 4.35
16 17 4.921834 CTTCAGGAAGGGAGCGAC 57.078 61.111 1.01 0.00 34.87 5.19
24 25 4.326826 TCAATAGCAACACCTTCAGGAAG 58.673 43.478 0.00 2.01 38.94 3.46
25 26 4.365514 TCAATAGCAACACCTTCAGGAA 57.634 40.909 0.00 0.00 38.94 3.36
26 27 4.041567 TCTTCAATAGCAACACCTTCAGGA 59.958 41.667 0.00 0.00 38.94 3.86
27 28 4.326826 TCTTCAATAGCAACACCTTCAGG 58.673 43.478 0.00 0.00 42.17 3.86
28 29 5.471456 AGTTCTTCAATAGCAACACCTTCAG 59.529 40.000 0.00 0.00 0.00 3.02
29 30 5.376625 AGTTCTTCAATAGCAACACCTTCA 58.623 37.500 0.00 0.00 0.00 3.02
30 31 5.389935 CGAGTTCTTCAATAGCAACACCTTC 60.390 44.000 0.00 0.00 0.00 3.46
31 32 4.452455 CGAGTTCTTCAATAGCAACACCTT 59.548 41.667 0.00 0.00 0.00 3.50
32 33 3.997021 CGAGTTCTTCAATAGCAACACCT 59.003 43.478 0.00 0.00 0.00 4.00
33 34 3.125316 CCGAGTTCTTCAATAGCAACACC 59.875 47.826 0.00 0.00 0.00 4.16
34 35 3.424962 GCCGAGTTCTTCAATAGCAACAC 60.425 47.826 0.00 0.00 0.00 3.32
35 36 2.742053 GCCGAGTTCTTCAATAGCAACA 59.258 45.455 0.00 0.00 0.00 3.33
36 37 2.222819 CGCCGAGTTCTTCAATAGCAAC 60.223 50.000 0.00 0.00 0.00 4.17
37 38 1.999735 CGCCGAGTTCTTCAATAGCAA 59.000 47.619 0.00 0.00 0.00 3.91
38 39 1.203758 TCGCCGAGTTCTTCAATAGCA 59.796 47.619 0.00 0.00 0.00 3.49
39 40 1.588861 GTCGCCGAGTTCTTCAATAGC 59.411 52.381 0.00 0.00 0.00 2.97
40 41 2.194271 GGTCGCCGAGTTCTTCAATAG 58.806 52.381 0.00 0.00 0.00 1.73
41 42 2.288961 GGTCGCCGAGTTCTTCAATA 57.711 50.000 0.00 0.00 0.00 1.90
42 43 3.139029 GGTCGCCGAGTTCTTCAAT 57.861 52.632 0.00 0.00 0.00 2.57
43 44 4.667420 GGTCGCCGAGTTCTTCAA 57.333 55.556 0.00 0.00 0.00 2.69
55 56 4.760047 AGGGCATCACACGGTCGC 62.760 66.667 0.00 0.00 0.00 5.19
56 57 2.815211 CAGGGCATCACACGGTCG 60.815 66.667 0.00 0.00 0.00 4.79
57 58 1.448540 CTCAGGGCATCACACGGTC 60.449 63.158 0.00 0.00 0.00 4.79
58 59 1.267574 ATCTCAGGGCATCACACGGT 61.268 55.000 0.00 0.00 0.00 4.83
59 60 0.812811 CATCTCAGGGCATCACACGG 60.813 60.000 0.00 0.00 0.00 4.94
60 61 0.812811 CCATCTCAGGGCATCACACG 60.813 60.000 0.00 0.00 0.00 4.49
61 62 0.254178 ACCATCTCAGGGCATCACAC 59.746 55.000 0.00 0.00 0.00 3.82
62 63 0.994247 AACCATCTCAGGGCATCACA 59.006 50.000 0.00 0.00 0.00 3.58
63 64 1.386533 CAACCATCTCAGGGCATCAC 58.613 55.000 0.00 0.00 0.00 3.06
64 65 0.256752 CCAACCATCTCAGGGCATCA 59.743 55.000 0.00 0.00 0.00 3.07
65 66 0.257039 ACCAACCATCTCAGGGCATC 59.743 55.000 0.00 0.00 0.00 3.91
66 67 0.033796 CACCAACCATCTCAGGGCAT 60.034 55.000 0.00 0.00 0.00 4.40
67 68 1.379916 CACCAACCATCTCAGGGCA 59.620 57.895 0.00 0.00 0.00 5.36
68 69 0.962356 CACACCAACCATCTCAGGGC 60.962 60.000 0.00 0.00 0.00 5.19
69 70 0.322816 CCACACCAACCATCTCAGGG 60.323 60.000 0.00 0.00 0.00 4.45
70 71 0.401738 ACCACACCAACCATCTCAGG 59.598 55.000 0.00 0.00 0.00 3.86
71 72 1.527034 CACCACACCAACCATCTCAG 58.473 55.000 0.00 0.00 0.00 3.35
72 73 0.537143 GCACCACACCAACCATCTCA 60.537 55.000 0.00 0.00 0.00 3.27
73 74 1.244019 GGCACCACACCAACCATCTC 61.244 60.000 0.00 0.00 0.00 2.75
74 75 1.228552 GGCACCACACCAACCATCT 60.229 57.895 0.00 0.00 0.00 2.90
75 76 2.625823 CGGCACCACACCAACCATC 61.626 63.158 0.00 0.00 0.00 3.51
76 77 2.597217 CGGCACCACACCAACCAT 60.597 61.111 0.00 0.00 0.00 3.55
77 78 4.116585 ACGGCACCACACCAACCA 62.117 61.111 0.00 0.00 0.00 3.67
78 79 3.591835 CACGGCACCACACCAACC 61.592 66.667 0.00 0.00 0.00 3.77
79 80 1.852067 GATCACGGCACCACACCAAC 61.852 60.000 0.00 0.00 0.00 3.77
80 81 1.599518 GATCACGGCACCACACCAA 60.600 57.895 0.00 0.00 0.00 3.67
81 82 2.031919 GATCACGGCACCACACCA 59.968 61.111 0.00 0.00 0.00 4.17
82 83 2.746277 GGATCACGGCACCACACC 60.746 66.667 0.00 0.00 0.00 4.16
83 84 1.298859 GAAGGATCACGGCACCACAC 61.299 60.000 0.00 0.00 0.00 3.82
84 85 1.003839 GAAGGATCACGGCACCACA 60.004 57.895 0.00 0.00 0.00 4.17
85 86 1.021390 CAGAAGGATCACGGCACCAC 61.021 60.000 0.00 0.00 0.00 4.16
86 87 1.191489 TCAGAAGGATCACGGCACCA 61.191 55.000 0.00 0.00 0.00 4.17
87 88 0.179000 ATCAGAAGGATCACGGCACC 59.821 55.000 0.00 0.00 0.00 5.01
88 89 2.029838 AATCAGAAGGATCACGGCAC 57.970 50.000 0.00 0.00 34.28 5.01
89 90 2.632377 GAAATCAGAAGGATCACGGCA 58.368 47.619 0.00 0.00 34.28 5.69
90 91 1.943340 GGAAATCAGAAGGATCACGGC 59.057 52.381 0.00 0.00 34.28 5.68
91 92 3.550437 AGGAAATCAGAAGGATCACGG 57.450 47.619 0.00 0.00 34.28 4.94
92 93 5.886960 AAAAGGAAATCAGAAGGATCACG 57.113 39.130 0.00 0.00 34.28 4.35
113 114 6.578944 TGAAGCTATACATAGGCGAGAAAAA 58.421 36.000 0.00 0.00 0.00 1.94
114 115 6.156748 TGAAGCTATACATAGGCGAGAAAA 57.843 37.500 0.00 0.00 0.00 2.29
115 116 5.302059 ACTGAAGCTATACATAGGCGAGAAA 59.698 40.000 0.00 0.00 0.00 2.52
116 117 4.827835 ACTGAAGCTATACATAGGCGAGAA 59.172 41.667 0.00 0.00 0.00 2.87
117 118 4.399219 ACTGAAGCTATACATAGGCGAGA 58.601 43.478 0.00 0.00 0.00 4.04
118 119 4.457603 AGACTGAAGCTATACATAGGCGAG 59.542 45.833 0.00 0.00 0.00 5.03
119 120 4.399219 AGACTGAAGCTATACATAGGCGA 58.601 43.478 0.00 0.00 0.00 5.54
120 121 4.775058 AGACTGAAGCTATACATAGGCG 57.225 45.455 0.00 0.00 0.00 5.52
147 148 9.764363 CATGTCAGCAAATAGTAAAGTCCTATA 57.236 33.333 0.00 0.00 0.00 1.31
148 149 8.267894 ACATGTCAGCAAATAGTAAAGTCCTAT 58.732 33.333 0.00 0.00 0.00 2.57
149 150 7.620880 ACATGTCAGCAAATAGTAAAGTCCTA 58.379 34.615 0.00 0.00 0.00 2.94
150 151 6.476378 ACATGTCAGCAAATAGTAAAGTCCT 58.524 36.000 0.00 0.00 0.00 3.85
151 152 6.743575 ACATGTCAGCAAATAGTAAAGTCC 57.256 37.500 0.00 0.00 0.00 3.85
152 153 9.463443 AAAAACATGTCAGCAAATAGTAAAGTC 57.537 29.630 0.00 0.00 0.00 3.01
153 154 9.248291 CAAAAACATGTCAGCAAATAGTAAAGT 57.752 29.630 0.00 0.00 0.00 2.66
154 155 8.702438 CCAAAAACATGTCAGCAAATAGTAAAG 58.298 33.333 0.00 0.00 0.00 1.85
155 156 7.655328 CCCAAAAACATGTCAGCAAATAGTAAA 59.345 33.333 0.00 0.00 0.00 2.01
156 157 7.151308 CCCAAAAACATGTCAGCAAATAGTAA 58.849 34.615 0.00 0.00 0.00 2.24
157 158 6.266558 ACCCAAAAACATGTCAGCAAATAGTA 59.733 34.615 0.00 0.00 0.00 1.82
158 159 5.070313 ACCCAAAAACATGTCAGCAAATAGT 59.930 36.000 0.00 0.00 0.00 2.12
159 160 5.406175 CACCCAAAAACATGTCAGCAAATAG 59.594 40.000 0.00 0.00 0.00 1.73
160 161 5.163364 ACACCCAAAAACATGTCAGCAAATA 60.163 36.000 0.00 0.00 0.00 1.40
161 162 4.128643 CACCCAAAAACATGTCAGCAAAT 58.871 39.130 0.00 0.00 0.00 2.32
162 163 3.055530 ACACCCAAAAACATGTCAGCAAA 60.056 39.130 0.00 0.00 0.00 3.68
163 164 2.499289 ACACCCAAAAACATGTCAGCAA 59.501 40.909 0.00 0.00 0.00 3.91
164 165 2.106566 ACACCCAAAAACATGTCAGCA 58.893 42.857 0.00 0.00 0.00 4.41
165 166 2.159114 ACACACCCAAAAACATGTCAGC 60.159 45.455 0.00 0.00 0.00 4.26
166 167 3.799281 ACACACCCAAAAACATGTCAG 57.201 42.857 0.00 0.00 0.00 3.51
167 168 4.500545 GCATACACACCCAAAAACATGTCA 60.501 41.667 0.00 0.00 0.00 3.58
168 169 3.987220 GCATACACACCCAAAAACATGTC 59.013 43.478 0.00 0.00 0.00 3.06
169 170 3.640967 AGCATACACACCCAAAAACATGT 59.359 39.130 0.00 0.00 0.00 3.21
170 171 3.989167 CAGCATACACACCCAAAAACATG 59.011 43.478 0.00 0.00 0.00 3.21
171 172 3.006752 CCAGCATACACACCCAAAAACAT 59.993 43.478 0.00 0.00 0.00 2.71
172 173 2.363680 CCAGCATACACACCCAAAAACA 59.636 45.455 0.00 0.00 0.00 2.83
173 174 2.364002 ACCAGCATACACACCCAAAAAC 59.636 45.455 0.00 0.00 0.00 2.43
174 175 2.672098 ACCAGCATACACACCCAAAAA 58.328 42.857 0.00 0.00 0.00 1.94
175 176 2.373335 ACCAGCATACACACCCAAAA 57.627 45.000 0.00 0.00 0.00 2.44
176 177 3.730215 ATACCAGCATACACACCCAAA 57.270 42.857 0.00 0.00 0.00 3.28
177 178 3.351740 CAATACCAGCATACACACCCAA 58.648 45.455 0.00 0.00 0.00 4.12
178 179 2.356638 CCAATACCAGCATACACACCCA 60.357 50.000 0.00 0.00 0.00 4.51
179 180 2.297701 CCAATACCAGCATACACACCC 58.702 52.381 0.00 0.00 0.00 4.61
180 181 1.676006 GCCAATACCAGCATACACACC 59.324 52.381 0.00 0.00 0.00 4.16
181 182 2.643551 AGCCAATACCAGCATACACAC 58.356 47.619 0.00 0.00 0.00 3.82
182 183 4.141505 ACATAGCCAATACCAGCATACACA 60.142 41.667 0.00 0.00 0.00 3.72
183 184 4.389374 ACATAGCCAATACCAGCATACAC 58.611 43.478 0.00 0.00 0.00 2.90
184 185 4.705110 ACATAGCCAATACCAGCATACA 57.295 40.909 0.00 0.00 0.00 2.29
185 186 7.657761 GGATATACATAGCCAATACCAGCATAC 59.342 40.741 0.00 0.00 38.65 2.39
186 187 7.568738 AGGATATACATAGCCAATACCAGCATA 59.431 37.037 6.32 0.00 41.19 3.14
187 188 6.388100 AGGATATACATAGCCAATACCAGCAT 59.612 38.462 6.32 0.00 41.19 3.79
188 189 5.726308 AGGATATACATAGCCAATACCAGCA 59.274 40.000 6.32 0.00 41.19 4.41
189 190 6.240549 AGGATATACATAGCCAATACCAGC 57.759 41.667 6.32 0.00 41.19 4.85
206 207 6.737608 ACCCAGCCTCTTCATAATTAGGATAT 59.262 38.462 0.00 0.00 0.00 1.63
207 208 6.091555 ACCCAGCCTCTTCATAATTAGGATA 58.908 40.000 0.00 0.00 0.00 2.59
214 215 3.118531 ACAGACCCAGCCTCTTCATAAT 58.881 45.455 0.00 0.00 0.00 1.28
215 216 2.551270 ACAGACCCAGCCTCTTCATAA 58.449 47.619 0.00 0.00 0.00 1.90
220 221 1.366319 ATGAACAGACCCAGCCTCTT 58.634 50.000 0.00 0.00 0.00 2.85
227 228 5.136828 ACAAACACAATATGAACAGACCCA 58.863 37.500 0.00 0.00 0.00 4.51
229 230 7.336931 AGGATACAAACACAATATGAACAGACC 59.663 37.037 0.00 0.00 41.41 3.85
230 231 8.268850 AGGATACAAACACAATATGAACAGAC 57.731 34.615 0.00 0.00 41.41 3.51
232 233 8.498054 AGAGGATACAAACACAATATGAACAG 57.502 34.615 0.00 0.00 41.41 3.16
237 238 9.383519 ACACTAAGAGGATACAAACACAATATG 57.616 33.333 0.00 0.00 41.41 1.78
239 240 9.214957 CAACACTAAGAGGATACAAACACAATA 57.785 33.333 0.00 0.00 41.41 1.90
253 254 7.681939 TGGCTTAAAATACAACACTAAGAGG 57.318 36.000 0.00 0.00 0.00 3.69
288 289 9.720769 AACAATCCGTATATTTCCGATAAAGAT 57.279 29.630 0.00 0.00 0.00 2.40
293 294 6.761312 ACCAACAATCCGTATATTTCCGATA 58.239 36.000 0.00 0.00 0.00 2.92
296 297 5.744666 AACCAACAATCCGTATATTTCCG 57.255 39.130 0.00 0.00 0.00 4.30
398 407 5.573282 CGATATCCATACAATCGGTCAGTTC 59.427 44.000 0.00 0.00 39.00 3.01
405 414 9.151471 AGTTTTTATCGATATCCATACAATCGG 57.849 33.333 5.84 0.00 42.07 4.18
433 443 0.164217 TACGTTCGCCAAATTGACGC 59.836 50.000 0.00 0.00 0.00 5.19
440 450 0.860533 CGGTTCTTACGTTCGCCAAA 59.139 50.000 0.00 0.00 0.00 3.28
446 456 4.746611 TCTTCCTTTTCGGTTCTTACGTTC 59.253 41.667 0.00 0.00 0.00 3.95
488 500 4.149922 GCAAAAGAAAAGGTTTGATACGGC 59.850 41.667 0.51 0.00 36.96 5.68
493 505 6.239217 AGGAAGCAAAAGAAAAGGTTTGAT 57.761 33.333 0.51 0.00 36.96 2.57
526 538 9.216148 ACCCCTGTAAACATTGTACTGTATATA 57.784 33.333 0.00 0.00 0.00 0.86
527 539 8.097791 ACCCCTGTAAACATTGTACTGTATAT 57.902 34.615 0.00 0.00 0.00 0.86
528 540 7.499200 ACCCCTGTAAACATTGTACTGTATA 57.501 36.000 0.00 0.00 0.00 1.47
529 541 6.382919 ACCCCTGTAAACATTGTACTGTAT 57.617 37.500 0.00 0.00 0.00 2.29
530 542 5.829062 ACCCCTGTAAACATTGTACTGTA 57.171 39.130 0.00 0.00 0.00 2.74
531 543 4.717279 ACCCCTGTAAACATTGTACTGT 57.283 40.909 0.00 0.00 0.00 3.55
532 544 6.177610 ACATACCCCTGTAAACATTGTACTG 58.822 40.000 0.00 0.00 0.00 2.74
533 545 6.382919 ACATACCCCTGTAAACATTGTACT 57.617 37.500 0.00 0.00 0.00 2.73
534 546 6.539826 GGTACATACCCCTGTAAACATTGTAC 59.460 42.308 0.00 0.00 40.53 2.90
535 547 6.652053 GGTACATACCCCTGTAAACATTGTA 58.348 40.000 0.00 0.00 40.53 2.41
558 570 7.161404 TGTGTTGGCTAGCTGATATATAAAGG 58.839 38.462 15.72 0.00 0.00 3.11
559 571 8.607441 TTGTGTTGGCTAGCTGATATATAAAG 57.393 34.615 15.72 0.00 0.00 1.85
560 572 7.173218 GCTTGTGTTGGCTAGCTGATATATAAA 59.827 37.037 15.72 0.00 35.07 1.40
561 573 6.650807 GCTTGTGTTGGCTAGCTGATATATAA 59.349 38.462 15.72 1.25 35.07 0.98
592 606 1.760192 ACATCCTCAAGCCAGCATTC 58.240 50.000 0.00 0.00 0.00 2.67
598 612 1.264749 ACGCCTACATCCTCAAGCCA 61.265 55.000 0.00 0.00 0.00 4.75
615 629 2.125178 GGAGACCCCATAGACCACG 58.875 63.158 0.00 0.00 34.14 4.94
629 643 1.530891 CCGAGGCCGATAAGGGAGA 60.531 63.158 0.00 0.00 41.48 3.71
643 657 1.722011 ACGATTGTTAAGGCACCGAG 58.278 50.000 0.00 0.00 0.00 4.63
682 764 1.657181 CGAACTTTTGCGGCACACC 60.657 57.895 0.05 0.00 0.00 4.16
683 765 2.292916 GCGAACTTTTGCGGCACAC 61.293 57.895 0.05 0.00 0.00 3.82
684 766 2.025441 GCGAACTTTTGCGGCACA 59.975 55.556 0.05 0.00 0.00 4.57
691 773 4.602957 GCACAATTTGTACGCGAACTTTTG 60.603 41.667 15.93 11.63 0.00 2.44
692 774 3.484285 GCACAATTTGTACGCGAACTTTT 59.516 39.130 15.93 0.00 0.00 2.27
693 775 3.040099 GCACAATTTGTACGCGAACTTT 58.960 40.909 15.93 0.00 0.00 2.66
695 777 1.069500 GGCACAATTTGTACGCGAACT 60.069 47.619 15.93 0.00 0.00 3.01
696 778 1.323791 GGCACAATTTGTACGCGAAC 58.676 50.000 15.93 0.00 0.00 3.95
697 779 0.238817 GGGCACAATTTGTACGCGAA 59.761 50.000 15.93 0.00 0.00 4.70
698 780 0.885150 TGGGCACAATTTGTACGCGA 60.885 50.000 15.93 0.00 30.11 5.87
699 781 0.170116 ATGGGCACAATTTGTACGCG 59.830 50.000 3.53 3.53 30.11 6.01
700 782 2.162608 TGTATGGGCACAATTTGTACGC 59.837 45.455 9.29 9.29 0.00 4.42
701 783 4.630894 ATGTATGGGCACAATTTGTACG 57.369 40.909 0.00 0.00 30.84 3.67
702 784 6.693315 AGTATGTATGGGCACAATTTGTAC 57.307 37.500 0.00 0.00 30.84 2.90
703 785 8.268605 TCTAAGTATGTATGGGCACAATTTGTA 58.731 33.333 0.00 0.00 30.84 2.41
704 786 7.116075 TCTAAGTATGTATGGGCACAATTTGT 58.884 34.615 0.00 0.00 30.84 2.83
705 787 7.566760 TCTAAGTATGTATGGGCACAATTTG 57.433 36.000 0.00 0.00 30.84 2.32
706 788 7.201696 CGTTCTAAGTATGTATGGGCACAATTT 60.202 37.037 0.00 0.00 30.84 1.82
707 789 6.260050 CGTTCTAAGTATGTATGGGCACAATT 59.740 38.462 0.00 0.00 30.84 2.32
708 790 5.758296 CGTTCTAAGTATGTATGGGCACAAT 59.242 40.000 0.00 0.00 30.84 2.71
709 791 5.105269 TCGTTCTAAGTATGTATGGGCACAA 60.105 40.000 0.00 0.00 30.84 3.33
710 792 4.403113 TCGTTCTAAGTATGTATGGGCACA 59.597 41.667 0.00 0.00 0.00 4.57
711 793 4.940463 TCGTTCTAAGTATGTATGGGCAC 58.060 43.478 0.00 0.00 0.00 5.01
712 794 5.601583 TTCGTTCTAAGTATGTATGGGCA 57.398 39.130 0.00 0.00 0.00 5.36
713 795 5.638234 GGATTCGTTCTAAGTATGTATGGGC 59.362 44.000 0.00 0.00 0.00 5.36
714 796 5.862323 CGGATTCGTTCTAAGTATGTATGGG 59.138 44.000 0.00 0.00 0.00 4.00
715 797 6.929587 CGGATTCGTTCTAAGTATGTATGG 57.070 41.667 0.00 0.00 0.00 2.74
745 827 0.865639 GGCACAACACTTTGTCACGC 60.866 55.000 0.00 0.00 44.57 5.34
754 836 1.069765 CTGGACTCGGCACAACACT 59.930 57.895 0.00 0.00 0.00 3.55
759 841 0.613572 TATCACCTGGACTCGGCACA 60.614 55.000 0.00 0.00 0.00 4.57
762 844 1.065928 CGTATCACCTGGACTCGGC 59.934 63.158 0.00 0.00 0.00 5.54
773 855 1.136446 GGTTTGTGTCACGCGTATCAC 60.136 52.381 27.41 27.41 0.00 3.06
774 856 1.141645 GGTTTGTGTCACGCGTATCA 58.858 50.000 13.44 11.71 0.00 2.15
775 857 1.425412 AGGTTTGTGTCACGCGTATC 58.575 50.000 13.44 8.81 0.00 2.24
776 858 2.728690 TAGGTTTGTGTCACGCGTAT 57.271 45.000 13.44 0.00 0.00 3.06
777 859 2.505628 TTAGGTTTGTGTCACGCGTA 57.494 45.000 13.44 0.00 0.00 4.42
778 860 1.328374 GTTTAGGTTTGTGTCACGCGT 59.672 47.619 5.58 5.58 0.00 6.01
779 861 1.328069 TGTTTAGGTTTGTGTCACGCG 59.672 47.619 3.53 3.53 0.00 6.01
780 862 3.408288 TTGTTTAGGTTTGTGTCACGC 57.592 42.857 0.00 0.00 0.00 5.34
781 863 4.976987 ACTTTGTTTAGGTTTGTGTCACG 58.023 39.130 0.00 0.00 0.00 4.35
782 864 6.316890 TCCTACTTTGTTTAGGTTTGTGTCAC 59.683 38.462 0.00 0.00 37.87 3.67
783 865 6.416415 TCCTACTTTGTTTAGGTTTGTGTCA 58.584 36.000 0.00 0.00 37.87 3.58
784 866 6.764560 TCTCCTACTTTGTTTAGGTTTGTGTC 59.235 38.462 0.00 0.00 37.87 3.67
785 867 6.541278 GTCTCCTACTTTGTTTAGGTTTGTGT 59.459 38.462 0.00 0.00 37.87 3.72
786 868 6.766467 AGTCTCCTACTTTGTTTAGGTTTGTG 59.234 38.462 0.00 0.00 37.87 3.33
787 869 6.896883 AGTCTCCTACTTTGTTTAGGTTTGT 58.103 36.000 0.00 0.00 37.87 2.83
821 903 2.029307 ATAACGAAGAGGGGCCGCTC 62.029 60.000 36.13 36.13 0.00 5.03
822 904 0.757935 TATAACGAAGAGGGGCCGCT 60.758 55.000 24.42 24.42 0.00 5.52
824 906 2.824341 ACTATATAACGAAGAGGGGCCG 59.176 50.000 0.00 0.00 0.00 6.13
832 914 6.649557 GGGGGATTGTTGACTATATAACGAAG 59.350 42.308 0.00 0.00 0.00 3.79
855 937 2.733945 CGTTGCTGGTTTTGGGGG 59.266 61.111 0.00 0.00 0.00 5.40
856 938 1.395826 TTCCGTTGCTGGTTTTGGGG 61.396 55.000 0.00 0.00 0.00 4.96
860 942 0.106419 TCCCTTCCGTTGCTGGTTTT 60.106 50.000 0.00 0.00 0.00 2.43
873 955 1.033574 AGTCGACGATGGATCCCTTC 58.966 55.000 9.90 5.49 0.00 3.46
877 959 1.658717 CGCAGTCGACGATGGATCC 60.659 63.158 10.46 4.20 38.10 3.36
882 964 1.515088 AGAAGCGCAGTCGACGATG 60.515 57.895 11.47 5.09 38.10 3.84
883 965 1.515088 CAGAAGCGCAGTCGACGAT 60.515 57.895 11.47 0.00 38.10 3.73
895 977 4.035324 TGCTAGATACAGTACGTCAGAAGC 59.965 45.833 0.00 0.00 0.00 3.86
899 981 5.215903 CCATTGCTAGATACAGTACGTCAG 58.784 45.833 0.00 0.00 0.00 3.51
901 983 3.982058 GCCATTGCTAGATACAGTACGTC 59.018 47.826 0.00 0.00 33.53 4.34
902 984 3.550233 CGCCATTGCTAGATACAGTACGT 60.550 47.826 0.00 0.00 34.43 3.57
903 985 2.980476 CGCCATTGCTAGATACAGTACG 59.020 50.000 0.00 0.00 34.43 3.67
904 986 2.731976 GCGCCATTGCTAGATACAGTAC 59.268 50.000 0.00 0.00 34.43 2.73
905 987 2.288825 GGCGCCATTGCTAGATACAGTA 60.289 50.000 24.80 0.00 34.43 2.74
906 988 1.541233 GGCGCCATTGCTAGATACAGT 60.541 52.381 24.80 0.00 34.43 3.55
909 991 0.250295 TGGGCGCCATTGCTAGATAC 60.250 55.000 30.85 6.35 34.43 2.24
912 994 1.451927 CTTGGGCGCCATTGCTAGA 60.452 57.895 30.85 2.95 31.53 2.43
914 996 2.440065 CCTTGGGCGCCATTGCTA 60.440 61.111 30.85 6.58 31.53 3.49
926 1018 1.407437 CCATCGAACCCTCTTCCTTGG 60.407 57.143 0.00 0.00 0.00 3.61
938 1030 4.449068 CCTACAGCATATTGTCCATCGAAC 59.551 45.833 0.00 0.00 32.56 3.95
958 1053 3.518998 GACGAGCTGCGCCTCCTA 61.519 66.667 4.18 0.00 46.04 2.94
979 1074 0.179045 GATACATCCGCACCCTGCTT 60.179 55.000 0.00 0.00 42.25 3.91
1172 1267 2.786539 AAGCTCTGCATTGTCGGCGA 62.787 55.000 4.99 4.99 0.00 5.54
1206 1301 2.159476 CCGGTACTCTTCGAAATCGTCA 60.159 50.000 0.00 0.00 40.80 4.35
1317 1412 6.099557 AGAGAATCCTCCTCTGTATTTCAAGG 59.900 42.308 0.00 0.00 39.36 3.61
1320 1415 5.300539 CGAGAGAATCCTCCTCTGTATTTCA 59.699 44.000 0.00 0.00 40.78 2.69
1324 1419 3.153919 GCGAGAGAATCCTCCTCTGTAT 58.846 50.000 0.00 0.00 40.78 2.29
1350 1445 0.107410 TAGCACAATACTTGGCGGGG 60.107 55.000 0.00 0.00 33.78 5.73
1380 1481 2.248248 CCGTCTGCATCCCTAATCCTA 58.752 52.381 0.00 0.00 0.00 2.94
1435 1536 7.014518 ACCATCAATCACAAGATCTTCAACAAA 59.985 33.333 4.57 0.00 31.90 2.83
1651 1784 6.127253 GGGTTCATTGCCAAGTACTACTACTA 60.127 42.308 0.00 0.00 32.46 1.82
1652 1785 5.338137 GGGTTCATTGCCAAGTACTACTACT 60.338 44.000 0.00 0.00 34.38 2.57
1653 1786 4.874396 GGGTTCATTGCCAAGTACTACTAC 59.126 45.833 0.00 0.00 0.00 2.73
1820 3419 3.748568 TGCAGTGCACGACATTACAAATA 59.251 39.130 15.37 0.00 31.71 1.40
1823 3422 1.587547 TGCAGTGCACGACATTACAA 58.412 45.000 15.37 0.00 31.71 2.41
1891 3490 4.463879 CAGGCCAGGAGCGAGTGG 62.464 72.222 5.01 0.00 45.17 4.00
1960 3584 8.624776 ACTAGCATTTTCCAATACAAGATAAGC 58.375 33.333 0.00 0.00 0.00 3.09
2063 3700 1.663074 GCGCGGAGATGGTGAGATC 60.663 63.158 8.83 0.00 0.00 2.75
2069 3706 4.241555 GGATGGCGCGGAGATGGT 62.242 66.667 8.83 0.00 0.00 3.55
2159 4259 3.075582 TCCAACAGTCCTACAGTCCTACT 59.924 47.826 0.00 0.00 0.00 2.57
2160 4260 3.428532 TCCAACAGTCCTACAGTCCTAC 58.571 50.000 0.00 0.00 0.00 3.18
2161 4261 3.820195 TCCAACAGTCCTACAGTCCTA 57.180 47.619 0.00 0.00 0.00 2.94
2162 4262 2.696526 TCCAACAGTCCTACAGTCCT 57.303 50.000 0.00 0.00 0.00 3.85
2163 4263 3.983044 AATCCAACAGTCCTACAGTCC 57.017 47.619 0.00 0.00 0.00 3.85
2164 4264 3.437049 GCAAATCCAACAGTCCTACAGTC 59.563 47.826 0.00 0.00 0.00 3.51
2165 4265 3.073062 AGCAAATCCAACAGTCCTACAGT 59.927 43.478 0.00 0.00 0.00 3.55
2166 4266 3.679389 AGCAAATCCAACAGTCCTACAG 58.321 45.455 0.00 0.00 0.00 2.74
2167 4267 3.674997 GAGCAAATCCAACAGTCCTACA 58.325 45.455 0.00 0.00 0.00 2.74
2168 4268 2.673368 CGAGCAAATCCAACAGTCCTAC 59.327 50.000 0.00 0.00 0.00 3.18
2169 4269 2.354704 CCGAGCAAATCCAACAGTCCTA 60.355 50.000 0.00 0.00 0.00 2.94
2170 4270 1.611673 CCGAGCAAATCCAACAGTCCT 60.612 52.381 0.00 0.00 0.00 3.85
2171 4271 0.804989 CCGAGCAAATCCAACAGTCC 59.195 55.000 0.00 0.00 0.00 3.85
2172 4272 1.523758 ACCGAGCAAATCCAACAGTC 58.476 50.000 0.00 0.00 0.00 3.51
2173 4273 1.880027 GAACCGAGCAAATCCAACAGT 59.120 47.619 0.00 0.00 0.00 3.55
2174 4274 1.200020 GGAACCGAGCAAATCCAACAG 59.800 52.381 0.00 0.00 32.08 3.16
2214 4314 3.502211 CCATGGTGAAACAGGTGTACTTC 59.498 47.826 2.57 0.00 39.98 3.01
2220 4320 0.540365 AGGCCATGGTGAAACAGGTG 60.540 55.000 14.67 0.00 39.98 4.00
2243 4343 0.673644 AGGGTGCGATTCCGAAAGTG 60.674 55.000 0.00 0.00 38.22 3.16
2244 4344 0.899720 TAGGGTGCGATTCCGAAAGT 59.100 50.000 0.00 0.00 38.22 2.66
2245 4345 1.867233 CATAGGGTGCGATTCCGAAAG 59.133 52.381 0.00 0.00 38.22 2.62
2246 4346 1.948104 CATAGGGTGCGATTCCGAAA 58.052 50.000 0.00 0.00 38.22 3.46
2247 4347 0.531974 GCATAGGGTGCGATTCCGAA 60.532 55.000 0.00 0.00 45.23 4.30
2248 4348 1.069090 GCATAGGGTGCGATTCCGA 59.931 57.895 0.00 0.00 45.23 4.55
2249 4349 3.642755 GCATAGGGTGCGATTCCG 58.357 61.111 0.00 0.00 45.23 4.30
2302 4402 1.305802 ACATAGGCCTGTCCCGACA 60.306 57.895 17.99 0.00 39.32 4.35
2303 4403 1.327690 TGACATAGGCCTGTCCCGAC 61.328 60.000 17.99 0.00 43.99 4.79
2304 4404 0.616395 TTGACATAGGCCTGTCCCGA 60.616 55.000 17.99 2.33 43.99 5.14
2305 4405 0.462047 GTTGACATAGGCCTGTCCCG 60.462 60.000 17.99 0.00 43.99 5.14
2306 4406 0.462047 CGTTGACATAGGCCTGTCCC 60.462 60.000 17.99 8.50 43.99 4.46
2307 4407 0.462047 CCGTTGACATAGGCCTGTCC 60.462 60.000 17.99 3.26 43.99 4.02
2308 4408 1.090052 GCCGTTGACATAGGCCTGTC 61.090 60.000 17.99 17.00 44.80 3.51
2309 4409 1.078426 GCCGTTGACATAGGCCTGT 60.078 57.895 17.99 5.57 44.80 4.00
2310 4410 3.813596 GCCGTTGACATAGGCCTG 58.186 61.111 17.99 2.10 44.80 4.85
2314 4414 2.192175 GGGGGCCGTTGACATAGG 59.808 66.667 0.00 0.00 0.00 2.57
2315 4415 2.203015 CGGGGGCCGTTGACATAG 60.203 66.667 0.00 0.00 42.73 2.23
2326 4426 3.767630 ATATGTTGCGGACGGGGGC 62.768 63.158 0.00 0.00 0.00 5.80
2327 4427 1.597027 GATATGTTGCGGACGGGGG 60.597 63.158 0.00 0.00 0.00 5.40
2328 4428 1.597027 GGATATGTTGCGGACGGGG 60.597 63.158 0.00 0.00 0.00 5.73
2329 4429 1.954146 CGGATATGTTGCGGACGGG 60.954 63.158 0.00 0.00 35.23 5.28
2330 4430 1.213094 GACGGATATGTTGCGGACGG 61.213 60.000 0.00 0.00 44.44 4.79
2331 4431 1.537289 CGACGGATATGTTGCGGACG 61.537 60.000 0.00 0.00 44.44 4.79
2332 4432 1.213094 CCGACGGATATGTTGCGGAC 61.213 60.000 8.64 0.00 44.44 4.79
2333 4433 1.066752 CCGACGGATATGTTGCGGA 59.933 57.895 8.64 0.00 44.44 5.54
2334 4434 2.594962 GCCGACGGATATGTTGCGG 61.595 63.158 20.50 0.00 44.44 5.69
2335 4435 2.927618 CGCCGACGGATATGTTGCG 61.928 63.158 20.50 7.31 45.80 4.85
2336 4436 0.595567 TACGCCGACGGATATGTTGC 60.596 55.000 20.50 0.00 46.04 4.17
2337 4437 1.405461 CTACGCCGACGGATATGTTG 58.595 55.000 20.50 7.03 46.04 3.33
2338 4438 0.318445 GCTACGCCGACGGATATGTT 60.318 55.000 20.50 0.00 46.04 2.71
2339 4439 1.285023 GCTACGCCGACGGATATGT 59.715 57.895 20.50 12.09 46.04 2.29
2340 4440 1.443872 GGCTACGCCGACGGATATG 60.444 63.158 20.50 6.18 46.04 1.78
2341 4441 2.960170 GGCTACGCCGACGGATAT 59.040 61.111 20.50 3.95 46.04 1.63
2371 4471 1.574702 GCCGACGGCCTTTATATGCC 61.575 60.000 28.74 0.00 44.06 4.40
2372 4472 1.866925 GCCGACGGCCTTTATATGC 59.133 57.895 28.74 0.00 44.06 3.14
2383 4483 0.526662 GATAGGTCCTATGCCGACGG 59.473 60.000 16.53 10.29 0.00 4.79
2384 4484 0.526662 GGATAGGTCCTATGCCGACG 59.473 60.000 16.53 0.00 41.60 5.12
2385 4485 0.896226 GGGATAGGTCCTATGCCGAC 59.104 60.000 28.15 10.67 43.10 4.79
2386 4486 3.376082 GGGATAGGTCCTATGCCGA 57.624 57.895 28.15 0.00 43.10 5.54
2388 4488 0.896226 GTCGGGATAGGTCCTATGCC 59.104 60.000 30.74 30.74 46.80 4.40
2389 4489 0.526662 CGTCGGGATAGGTCCTATGC 59.473 60.000 19.58 19.58 44.44 3.14
2390 4490 1.174783 CCGTCGGGATAGGTCCTATG 58.825 60.000 16.53 2.38 44.44 2.23
2391 4491 0.776176 ACCGTCGGGATAGGTCCTAT 59.224 55.000 17.28 11.45 44.44 2.57
2392 4492 0.179009 CACCGTCGGGATAGGTCCTA 60.179 60.000 17.28 0.00 44.44 2.94
2393 4493 1.455217 CACCGTCGGGATAGGTCCT 60.455 63.158 17.28 0.00 44.44 3.85
2394 4494 1.325476 AACACCGTCGGGATAGGTCC 61.325 60.000 17.28 0.00 44.29 4.46
2395 4495 0.101939 GAACACCGTCGGGATAGGTC 59.898 60.000 17.28 6.89 35.85 3.85
2396 4496 1.660560 CGAACACCGTCGGGATAGGT 61.661 60.000 17.28 0.40 37.37 3.08
2397 4497 1.065273 CGAACACCGTCGGGATAGG 59.935 63.158 17.28 2.02 37.37 2.57
2398 4498 4.704007 CGAACACCGTCGGGATAG 57.296 61.111 17.28 5.01 37.37 2.08
2407 4507 2.124903 GGCATAGATGTACGAACACCG 58.875 52.381 0.00 0.00 38.78 4.94
2408 4508 2.124903 CGGCATAGATGTACGAACACC 58.875 52.381 0.00 0.00 38.78 4.16
2409 4509 2.124903 CCGGCATAGATGTACGAACAC 58.875 52.381 9.34 0.00 38.78 3.32
2410 4510 1.537348 GCCGGCATAGATGTACGAACA 60.537 52.381 24.80 0.00 40.69 3.18
2411 4511 1.137513 GCCGGCATAGATGTACGAAC 58.862 55.000 24.80 0.00 34.08 3.95
2412 4512 0.318360 CGCCGGCATAGATGTACGAA 60.318 55.000 28.98 0.00 34.08 3.85
2413 4513 1.284715 CGCCGGCATAGATGTACGA 59.715 57.895 28.98 0.00 34.08 3.43
2414 4514 1.733041 CCGCCGGCATAGATGTACG 60.733 63.158 28.98 5.35 0.00 3.67
2415 4515 4.261888 CCGCCGGCATAGATGTAC 57.738 61.111 28.98 0.00 0.00 2.90
2440 4540 3.484547 GAGGTAACGTTGCCGGCG 61.485 66.667 26.65 10.49 46.39 6.46
2441 4541 2.229690 TAGGAGGTAACGTTGCCGGC 62.230 60.000 26.65 22.73 46.39 6.13
2442 4542 0.247185 TTAGGAGGTAACGTTGCCGG 59.753 55.000 26.65 0.00 46.39 6.13
2443 4543 1.353076 GTTAGGAGGTAACGTTGCCG 58.647 55.000 26.65 0.00 46.39 5.69
2468 4568 3.414700 GTCAGCACTTGACGGCGG 61.415 66.667 13.24 0.00 46.13 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.