Multiple sequence alignment - TraesCS7D01G041100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G041100 chr7D 100.000 3784 0 0 1 3784 20574178 20577961 0.000000e+00 6988.0
1 TraesCS7D01G041100 chr7D 82.997 3176 475 38 596 3734 89533400 89530253 0.000000e+00 2813.0
2 TraesCS7D01G041100 chr7D 80.655 3603 561 74 267 3784 20597658 20601209 0.000000e+00 2667.0
3 TraesCS7D01G041100 chr7D 82.117 3137 497 40 639 3729 20310514 20313632 0.000000e+00 2627.0
4 TraesCS7D01G041100 chr7D 81.412 3158 502 51 633 3743 555196715 555193596 0.000000e+00 2501.0
5 TraesCS7D01G041100 chr7A 91.583 3006 225 12 756 3739 20728004 20731003 0.000000e+00 4124.0
6 TraesCS7D01G041100 chr7A 82.288 3427 506 58 387 3735 20979986 20983389 0.000000e+00 2872.0
7 TraesCS7D01G041100 chr7A 82.780 3194 467 53 640 3781 20588411 20591573 0.000000e+00 2774.0
8 TraesCS7D01G041100 chr7A 82.264 3242 512 30 574 3780 20600638 20603851 0.000000e+00 2743.0
9 TraesCS7D01G041100 chr7A 81.927 3187 518 36 639 3780 20482462 20485635 0.000000e+00 2641.0
10 TraesCS7D01G041100 chr7A 82.894 2958 445 37 869 3784 20650704 20653642 0.000000e+00 2603.0
11 TraesCS7D01G041100 chr7A 82.388 2822 443 34 880 3666 20910600 20913402 0.000000e+00 2409.0
12 TraesCS7D01G041100 chr7A 94.188 757 40 3 2 757 20727090 20727843 0.000000e+00 1151.0
13 TraesCS7D01G041100 chr7A 87.168 226 25 2 294 519 20600388 20600609 1.740000e-63 254.0
14 TraesCS7D01G041100 chr7A 91.176 68 4 1 25 92 20667150 20667215 1.450000e-14 91.6
15 TraesCS7D01G041100 chr2A 82.250 3262 494 56 574 3780 733087385 733090616 0.000000e+00 2737.0
16 TraesCS7D01G041100 chr2A 78.455 246 42 10 243 485 733087083 733087320 2.350000e-32 150.0
17 TraesCS7D01G041100 chr2B 81.686 3227 517 50 574 3750 727685630 727688832 0.000000e+00 2617.0
18 TraesCS7D01G041100 chr2B 100.000 28 0 0 25 52 727684871 727684898 7.000000e-03 52.8
19 TraesCS7D01G041100 chr2D 81.604 3229 519 51 574 3750 598813671 598816876 0.000000e+00 2603.0
20 TraesCS7D01G041100 chr5B 81.022 2819 460 51 976 3743 591521488 591524282 0.000000e+00 2172.0
21 TraesCS7D01G041100 chr4A 80.763 2885 430 72 744 3578 693880814 693878005 0.000000e+00 2137.0
22 TraesCS7D01G041100 chr7B 80.114 176 27 5 321 494 601113078 601113247 1.430000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G041100 chr7D 20574178 20577961 3783 False 6988.0 6988 100.0000 1 3784 1 chr7D.!!$F2 3783
1 TraesCS7D01G041100 chr7D 89530253 89533400 3147 True 2813.0 2813 82.9970 596 3734 1 chr7D.!!$R1 3138
2 TraesCS7D01G041100 chr7D 20597658 20601209 3551 False 2667.0 2667 80.6550 267 3784 1 chr7D.!!$F3 3517
3 TraesCS7D01G041100 chr7D 20310514 20313632 3118 False 2627.0 2627 82.1170 639 3729 1 chr7D.!!$F1 3090
4 TraesCS7D01G041100 chr7D 555193596 555196715 3119 True 2501.0 2501 81.4120 633 3743 1 chr7D.!!$R2 3110
5 TraesCS7D01G041100 chr7A 20979986 20983389 3403 False 2872.0 2872 82.2880 387 3735 1 chr7A.!!$F6 3348
6 TraesCS7D01G041100 chr7A 20588411 20591573 3162 False 2774.0 2774 82.7800 640 3781 1 chr7A.!!$F2 3141
7 TraesCS7D01G041100 chr7A 20482462 20485635 3173 False 2641.0 2641 81.9270 639 3780 1 chr7A.!!$F1 3141
8 TraesCS7D01G041100 chr7A 20727090 20731003 3913 False 2637.5 4124 92.8855 2 3739 2 chr7A.!!$F8 3737
9 TraesCS7D01G041100 chr7A 20650704 20653642 2938 False 2603.0 2603 82.8940 869 3784 1 chr7A.!!$F3 2915
10 TraesCS7D01G041100 chr7A 20910600 20913402 2802 False 2409.0 2409 82.3880 880 3666 1 chr7A.!!$F5 2786
11 TraesCS7D01G041100 chr7A 20600388 20603851 3463 False 1498.5 2743 84.7160 294 3780 2 chr7A.!!$F7 3486
12 TraesCS7D01G041100 chr2A 733087083 733090616 3533 False 1443.5 2737 80.3525 243 3780 2 chr2A.!!$F1 3537
13 TraesCS7D01G041100 chr2B 727684871 727688832 3961 False 1334.9 2617 90.8430 25 3750 2 chr2B.!!$F1 3725
14 TraesCS7D01G041100 chr2D 598813671 598816876 3205 False 2603.0 2603 81.6040 574 3750 1 chr2D.!!$F1 3176
15 TraesCS7D01G041100 chr5B 591521488 591524282 2794 False 2172.0 2172 81.0220 976 3743 1 chr5B.!!$F1 2767
16 TraesCS7D01G041100 chr4A 693878005 693880814 2809 True 2137.0 2137 80.7630 744 3578 1 chr4A.!!$R1 2834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.674895 AGAACAATCGCCCTCTGTGC 60.675 55.0 0.0 0.0 0.0 4.57 F
165 400 1.216064 AGCACCTGATGGGCTTATGA 58.784 50.0 0.0 0.0 36.8 2.15 F
1197 1695 0.871722 TGGACATTCGAAACCGCAAG 59.128 50.0 0.0 0.0 0.0 4.01 F
1584 2097 0.478072 AGTGGTTGGCAGGTGATCAA 59.522 50.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1111 1609 1.029408 TCCATGCCGCGCTGTAATTT 61.029 50.000 5.56 0.0 0.00 1.82 R
1584 2097 2.093500 TGCTATCACAGAGCGTTCCAAT 60.093 45.455 0.00 0.0 43.19 3.16 R
2521 3034 1.825090 TCAGCTGCCAAATCACGAAT 58.175 45.000 9.47 0.0 0.00 3.34 R
3323 3869 0.034089 CCCCCTACCAGCTTGAAAGG 60.034 60.000 0.00 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 7.837689 TCTGGCTATCTTAGGTTGTACTTAGAA 59.162 37.037 0.00 0.00 30.89 2.10
62 63 8.928270 ATCTTAGGTTGTACTTAGAACAATCG 57.072 34.615 0.00 0.00 41.76 3.34
72 73 0.674895 AGAACAATCGCCCTCTGTGC 60.675 55.000 0.00 0.00 0.00 4.57
82 83 1.600413 GCCCTCTGTGCGAAACAAAAG 60.600 52.381 0.00 0.00 38.67 2.27
89 90 1.792367 GTGCGAAACAAAAGCCATTCC 59.208 47.619 0.00 0.00 0.00 3.01
92 93 2.061028 CGAAACAAAAGCCATTCCTGC 58.939 47.619 0.00 0.00 0.00 4.85
98 99 3.445096 ACAAAAGCCATTCCTGCTGTATC 59.555 43.478 0.00 0.00 39.48 2.24
101 102 3.205784 AGCCATTCCTGCTGTATCTTC 57.794 47.619 0.00 0.00 37.76 2.87
165 400 1.216064 AGCACCTGATGGGCTTATGA 58.784 50.000 0.00 0.00 36.80 2.15
175 410 3.581265 TGGGCTTATGATCTTGCATCA 57.419 42.857 0.00 0.00 0.00 3.07
176 411 3.900971 TGGGCTTATGATCTTGCATCAA 58.099 40.909 0.00 0.00 0.00 2.57
177 412 4.279982 TGGGCTTATGATCTTGCATCAAA 58.720 39.130 0.00 0.00 0.00 2.69
186 421 6.673154 TGATCTTGCATCAAAGATACACTG 57.327 37.500 0.00 0.00 44.96 3.66
292 528 7.812309 ATTAAGGTCGTTTTAGTTACGGTAC 57.188 36.000 0.00 0.00 39.38 3.34
321 572 9.628500 GTATATTGGTTTTTCCTAATGAGTCCT 57.372 33.333 0.00 0.00 37.07 3.85
344 595 9.440773 TCCTATATGACATTATAGCTTTGCTTG 57.559 33.333 0.00 0.00 40.44 4.01
393 644 8.340618 ACATCTTTCTTTCTTGCAGCTTAATA 57.659 30.769 0.00 0.00 0.00 0.98
512 779 3.057456 AGCCTACGTTCATATTAGCGAGG 60.057 47.826 0.00 4.31 0.00 4.63
551 819 2.039879 TGGTCCCTCTTTGCCTTACTTC 59.960 50.000 0.00 0.00 0.00 3.01
560 828 6.063640 TCTTTGCCTTACTTCGTTAAAACC 57.936 37.500 0.00 0.00 0.00 3.27
851 1323 3.915437 ACCGTGGTTGCAGATTTTTAG 57.085 42.857 0.00 0.00 0.00 1.85
852 1324 3.219281 ACCGTGGTTGCAGATTTTTAGT 58.781 40.909 0.00 0.00 0.00 2.24
944 1441 9.077885 GTTGCCATCCTAATTATATTGAGGAAA 57.922 33.333 5.04 0.00 41.37 3.13
1197 1695 0.871722 TGGACATTCGAAACCGCAAG 59.128 50.000 0.00 0.00 0.00 4.01
1305 1803 1.474077 GGTCAGGAACATGATGTTGGC 59.526 52.381 16.52 3.52 41.28 4.52
1548 2061 1.621814 CTAGTGGGGGTCGACAAGAAA 59.378 52.381 18.91 0.00 0.00 2.52
1584 2097 0.478072 AGTGGTTGGCAGGTGATCAA 59.522 50.000 0.00 0.00 0.00 2.57
2080 2593 7.726216 AGATACGAATTATGAATGTCCAGTGA 58.274 34.615 0.00 0.00 0.00 3.41
2484 2997 5.758784 GCTACAACTTGTTAAGAGGAACACT 59.241 40.000 0.00 0.00 39.02 3.55
2521 3034 5.664457 AGAGATTTAGAATGCACGACATCA 58.336 37.500 0.00 0.00 38.34 3.07
2523 3036 6.765036 AGAGATTTAGAATGCACGACATCATT 59.235 34.615 0.00 0.00 38.34 2.57
2590 3104 7.225931 GTGTTACATATGACGATAATTGTGGGT 59.774 37.037 10.38 0.00 0.00 4.51
2591 3105 7.771361 TGTTACATATGACGATAATTGTGGGTT 59.229 33.333 10.38 0.00 0.00 4.11
2596 3110 5.408880 TGACGATAATTGTGGGTTGTCTA 57.591 39.130 0.00 0.00 0.00 2.59
2625 3139 3.513680 AATGTGCGTCGATTGGTACTA 57.486 42.857 0.00 0.00 0.00 1.82
2627 3141 1.186030 GTGCGTCGATTGGTACTACG 58.814 55.000 0.00 0.00 36.67 3.51
2633 3162 2.346545 GTCGATTGGTACTACGCAAACC 59.653 50.000 0.00 0.00 0.00 3.27
2697 3232 6.224584 TCGTACATTCATTACACTGGACAAA 58.775 36.000 0.00 0.00 0.00 2.83
2699 3234 7.389330 TCGTACATTCATTACACTGGACAAAAT 59.611 33.333 0.00 0.00 0.00 1.82
2710 3245 3.194116 ACTGGACAAAATCATGCCATCAC 59.806 43.478 0.00 0.00 0.00 3.06
2764 3299 8.514136 GTCAAGATATATGACAGTGCTAGAAC 57.486 38.462 13.58 0.00 45.13 3.01
2802 3337 6.372103 CCATTGAGAAGATTCCAGATGCTATC 59.628 42.308 0.00 0.00 0.00 2.08
2805 3340 3.900601 AGAAGATTCCAGATGCTATCGGT 59.099 43.478 0.00 0.00 0.00 4.69
2854 3389 6.368213 GGTTTACGTGATACAAAAGTGAAGG 58.632 40.000 0.00 0.00 0.00 3.46
2856 3391 7.412063 GTTTACGTGATACAAAAGTGAAGGTT 58.588 34.615 0.00 0.00 0.00 3.50
2882 3417 4.153117 CCCGAAGTCTGTTGAGAATCTTTG 59.847 45.833 0.00 0.00 34.92 2.77
2883 3418 4.377841 CCGAAGTCTGTTGAGAATCTTTGC 60.378 45.833 0.00 0.00 34.92 3.68
3022 3566 9.691362 GAAAATTGTCTAAATATGGTGTGTGTT 57.309 29.630 0.00 0.00 0.00 3.32
3084 3628 2.421424 GCAGGCATTGGAAGTACAAGAG 59.579 50.000 0.00 0.00 33.23 2.85
3256 3802 3.424433 GGTTCTAAAGTTGAATGTCCGCG 60.424 47.826 0.00 0.00 0.00 6.46
3281 3827 3.255642 CCAAGCCTGCAAAAGCTAACTTA 59.744 43.478 6.02 0.00 38.74 2.24
3316 3862 2.920912 AAGGGGCGTTGGACGAGA 60.921 61.111 4.46 0.00 46.05 4.04
3323 3869 1.507174 CGTTGGACGAGACTCCTCC 59.493 63.158 12.25 12.25 46.05 4.30
3400 3946 1.904990 GAGAGAAGACCCCCTGCCAC 61.905 65.000 0.00 0.00 0.00 5.01
3414 3960 1.128809 TGCCACCCCTTTCTCGGTTA 61.129 55.000 0.00 0.00 0.00 2.85
3443 3989 0.733729 ACGCGTCTAGATCTCACCAC 59.266 55.000 5.58 0.00 0.00 4.16
3492 4053 2.087646 CCCAAGCTAAAGGTTCTCTGC 58.912 52.381 0.00 0.00 32.86 4.26
3508 4069 0.177604 CTGCCTAAGAGACCTGCCTG 59.822 60.000 0.00 0.00 0.00 4.85
3531 4092 4.359434 TCTGAGTCGGCTAGAGATACAT 57.641 45.455 0.00 0.00 0.00 2.29
3548 4113 5.784390 AGATACATCAAGGTGCCATAGAGAT 59.216 40.000 0.00 0.00 0.00 2.75
3591 4156 1.812922 CCTCAGCAGCATGACGGAC 60.813 63.158 0.00 0.00 39.69 4.79
3628 4193 0.966920 GTTCCTCACGTCCCTCAAGA 59.033 55.000 0.00 0.00 0.00 3.02
3636 4201 1.203149 ACGTCCCTCAAGAACCTAGGT 60.203 52.381 9.21 9.21 0.00 3.08
3682 4247 2.821366 CATCCCTGCGCCAGTGTC 60.821 66.667 4.18 0.00 0.00 3.67
3705 4282 0.391130 CAATTCGAGGGAAGTGGCGA 60.391 55.000 0.00 0.00 42.81 5.54
3710 4287 2.160205 TCGAGGGAAGTGGCGATATAG 58.840 52.381 0.00 0.00 0.00 1.31
3743 4328 1.110442 CCTGCTACTCTGGTCTGGAG 58.890 60.000 0.00 0.00 36.92 3.86
3746 4334 1.075536 TGCTACTCTGGTCTGGAGACA 59.924 52.381 8.99 0.00 46.47 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.113260 ACTAGGTGTGCAGTTCTGAAC 57.887 47.619 12.54 12.54 0.00 3.18
62 63 0.383949 TTTTGTTTCGCACAGAGGGC 59.616 50.000 0.00 0.00 36.48 5.19
72 73 2.061028 GCAGGAATGGCTTTTGTTTCG 58.939 47.619 0.00 0.00 0.00 3.46
82 83 2.158696 AGGAAGATACAGCAGGAATGGC 60.159 50.000 0.00 0.00 0.00 4.40
89 90 6.441093 TGCAAATTTAGGAAGATACAGCAG 57.559 37.500 0.00 0.00 0.00 4.24
92 93 6.096001 AGGCTTGCAAATTTAGGAAGATACAG 59.904 38.462 18.77 1.45 36.66 2.74
98 99 4.789012 TCAGGCTTGCAAATTTAGGAAG 57.211 40.909 0.00 13.57 37.47 3.46
101 102 5.464389 GCATTATCAGGCTTGCAAATTTAGG 59.536 40.000 0.00 0.00 35.22 2.69
137 372 3.759581 CCCATCAGGTGCTAAGCATATT 58.240 45.455 0.00 0.00 41.91 1.28
165 400 5.356190 CACCAGTGTATCTTTGATGCAAGAT 59.644 40.000 4.16 4.16 0.00 2.40
186 421 3.197983 AGGAAGCTAGGTATTCACACACC 59.802 47.826 0.00 0.00 34.86 4.16
198 433 8.738645 ATAATGTTTGACTTTAGGAAGCTAGG 57.261 34.615 0.00 0.00 36.29 3.02
321 572 8.853077 AGCAAGCAAAGCTATAATGTCATATA 57.147 30.769 0.00 0.00 41.32 0.86
322 573 7.756395 AGCAAGCAAAGCTATAATGTCATAT 57.244 32.000 0.00 0.00 41.32 1.78
344 595 8.712363 TGTAGCGAATCAAGATAATGAATAAGC 58.288 33.333 0.00 0.00 32.06 3.09
355 606 7.768120 AGAAAGAAAGATGTAGCGAATCAAGAT 59.232 33.333 0.00 0.00 0.00 2.40
396 647 9.384764 GTATGGAGAAACAAATAGCTAGAGTTT 57.615 33.333 16.28 16.28 35.33 2.66
512 779 3.877508 GACCAAGATAACATACCTGCCAC 59.122 47.826 0.00 0.00 0.00 5.01
551 819 5.189659 TCCCAAATGTTGAGGTTTTAACG 57.810 39.130 0.00 0.00 0.00 3.18
560 828 5.242393 ACATCTCAAGTTCCCAAATGTTGAG 59.758 40.000 4.37 4.37 43.61 3.02
851 1323 2.476241 GCTAGCATTTGCCAAAACACAC 59.524 45.455 10.63 0.00 43.38 3.82
852 1324 2.102084 TGCTAGCATTTGCCAAAACACA 59.898 40.909 14.93 0.00 43.38 3.72
944 1441 3.181443 GGTGGTGGCCTAGCTGTTTATAT 60.181 47.826 3.32 0.00 0.00 0.86
1111 1609 1.029408 TCCATGCCGCGCTGTAATTT 61.029 50.000 5.56 0.00 0.00 1.82
1197 1695 6.459298 CCAACCAGATCTCATATGCTTGTTTC 60.459 42.308 0.00 0.00 0.00 2.78
1305 1803 7.275183 ACCCATTCTTCAGGAAAAAGAAAAAG 58.725 34.615 2.75 0.00 43.76 2.27
1548 2061 5.234466 ACCACTGCTGAAGTAATTCTCTT 57.766 39.130 4.35 0.00 36.83 2.85
1584 2097 2.093500 TGCTATCACAGAGCGTTCCAAT 60.093 45.455 0.00 0.00 43.19 3.16
2080 2593 6.959639 TTCATTAGACAAAGGCTTCAACTT 57.040 33.333 0.00 0.00 0.00 2.66
2484 2997 7.324388 TCTAAATCTCTTCACCCTACCAAAA 57.676 36.000 0.00 0.00 0.00 2.44
2521 3034 1.825090 TCAGCTGCCAAATCACGAAT 58.175 45.000 9.47 0.00 0.00 3.34
2523 3036 1.825090 AATCAGCTGCCAAATCACGA 58.175 45.000 9.47 0.00 0.00 4.35
2596 3110 2.412870 TCGACGCACATTTGTCTCAAT 58.587 42.857 0.00 0.00 32.93 2.57
2603 3117 2.415168 AGTACCAATCGACGCACATTTG 59.585 45.455 0.00 0.00 0.00 2.32
2625 3139 4.764823 TGATTATCCTTCTTTGGTTTGCGT 59.235 37.500 0.00 0.00 0.00 5.24
2627 3141 6.866480 TGATGATTATCCTTCTTTGGTTTGC 58.134 36.000 0.00 0.00 32.09 3.68
2633 3162 6.293298 CGAAGGCTGATGATTATCCTTCTTTG 60.293 42.308 15.07 0.46 46.44 2.77
2658 3193 2.004733 GTACGAAGTTGGTGCATACCC 58.995 52.381 0.11 0.00 44.49 3.69
2697 3232 3.928005 AGAGTGAGTGATGGCATGATT 57.072 42.857 3.81 0.00 0.00 2.57
2699 3234 3.369175 AGTAGAGTGAGTGATGGCATGA 58.631 45.455 3.81 0.00 0.00 3.07
2710 3245 5.373222 ACATAGCAGAGGTAGTAGAGTGAG 58.627 45.833 0.00 0.00 0.00 3.51
2805 3340 6.405731 CCAAATGGCGGAGATTAAAAAGATCA 60.406 38.462 0.00 0.00 0.00 2.92
2854 3389 2.296471 TCTCAACAGACTTCGGGAGAAC 59.704 50.000 0.00 0.00 45.39 3.01
2856 3391 2.287977 TCTCAACAGACTTCGGGAGA 57.712 50.000 0.00 0.00 0.00 3.71
2882 3417 4.584327 AGGTCCAGTGTTAACAAATTGC 57.416 40.909 10.51 0.00 0.00 3.56
2883 3418 8.356657 TCATAAAGGTCCAGTGTTAACAAATTG 58.643 33.333 10.51 9.16 0.00 2.32
3022 3566 3.077391 AGATTTCCAAGACCATTGGGGAA 59.923 43.478 7.78 7.31 39.96 3.97
3084 3628 5.209659 TCCCCTAAATGTCTAAGAGACTCC 58.790 45.833 8.04 0.00 45.27 3.85
3256 3802 1.957695 GCTTTTGCAGGCTTGGCAC 60.958 57.895 0.00 0.00 46.58 5.01
3281 3827 2.517402 CCGCTAGTCGCCCTCTCT 60.517 66.667 0.00 0.00 36.73 3.10
3316 3862 0.695347 CCAGCTTGAAAGGGAGGAGT 59.305 55.000 0.00 0.00 0.00 3.85
3323 3869 0.034089 CCCCCTACCAGCTTGAAAGG 60.034 60.000 0.00 0.00 0.00 3.11
3400 3946 3.951663 AGTTTGATAACCGAGAAAGGGG 58.048 45.455 0.00 0.00 34.71 4.79
3414 3960 3.570926 TCTAGACGCGTCAAGTTTGAT 57.429 42.857 37.85 19.03 39.73 2.57
3443 3989 0.174389 AGTGACTCCGCTGTATGCTG 59.826 55.000 0.00 0.00 40.11 4.41
3492 4053 2.364970 CAGATCAGGCAGGTCTCTTAGG 59.635 54.545 0.00 0.00 0.00 2.69
3508 4069 4.320023 TGTATCTCTAGCCGACTCAGATC 58.680 47.826 0.00 0.00 31.29 2.75
3531 4092 2.702478 CAGGATCTCTATGGCACCTTGA 59.298 50.000 0.00 0.00 0.00 3.02
3548 4113 7.998964 GGTTGATTAAGATTAATTCCTCCAGGA 59.001 37.037 0.00 0.00 43.73 3.86
3591 4156 1.746615 CTCAATGCCAGGTGGGACG 60.747 63.158 0.00 0.00 38.75 4.79
3628 4193 5.248477 TGCTGATCTTGTAGAAACCTAGGTT 59.752 40.000 21.96 21.96 40.45 3.50
3636 4201 7.619050 AGAAATCTCTGCTGATCTTGTAGAAA 58.381 34.615 0.00 0.00 0.00 2.52
3682 4247 1.089920 CACTTCCCTCGAATTGCAGG 58.910 55.000 0.00 0.00 0.00 4.85
3705 4282 4.461081 GCAGGTCAATCTCGGAGACTATAT 59.539 45.833 10.41 0.00 32.98 0.86
3710 4287 0.820871 AGCAGGTCAATCTCGGAGAC 59.179 55.000 10.41 0.00 0.00 3.36
3739 4324 2.760634 ACGTACATGCATTGTCTCCA 57.239 45.000 0.00 0.00 39.87 3.86
3743 4328 5.107989 CGATACCTTACGTACATGCATTGTC 60.108 44.000 0.00 0.00 39.87 3.18
3746 4334 3.739300 GCGATACCTTACGTACATGCATT 59.261 43.478 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.