Multiple sequence alignment - TraesCS7D01G040800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G040800 chr7D 100.000 2441 0 0 1 2441 20517137 20514697 0.000000e+00 4508.0
1 TraesCS7D01G040800 chr7D 91.091 999 63 18 1466 2441 27863611 27864606 0.000000e+00 1328.0
2 TraesCS7D01G040800 chr7D 91.738 351 23 5 2094 2441 531589213 531589560 1.310000e-132 483.0
3 TraesCS7D01G040800 chr7D 90.085 353 30 5 2094 2441 508674645 508674293 1.030000e-123 453.0
4 TraesCS7D01G040800 chr7D 85.577 416 46 3 951 1353 20117585 20117171 8.070000e-115 424.0
5 TraesCS7D01G040800 chr7D 95.918 98 4 0 826 923 264900926 264901023 2.510000e-35 159.0
6 TraesCS7D01G040800 chr7D 94.000 100 5 1 827 925 22260876 22260975 1.510000e-32 150.0
7 TraesCS7D01G040800 chr7D 86.486 74 6 3 758 831 108173833 108173764 7.240000e-11 78.7
8 TraesCS7D01G040800 chr3D 93.516 987 45 13 1466 2441 574612814 574611836 0.000000e+00 1450.0
9 TraesCS7D01G040800 chr3D 90.110 1001 52 17 1466 2441 19176126 19177104 0.000000e+00 1256.0
10 TraesCS7D01G040800 chr3D 86.720 753 61 11 1695 2439 609964225 609963504 0.000000e+00 800.0
11 TraesCS7D01G040800 chr3D 94.792 96 5 0 826 921 141424363 141424268 1.510000e-32 150.0
12 TraesCS7D01G040800 chr3D 89.381 113 9 3 830 940 611167341 611167230 3.270000e-29 139.0
13 TraesCS7D01G040800 chr3D 87.838 74 5 3 758 831 7750391 7750460 1.560000e-12 84.2
14 TraesCS7D01G040800 chr3D 87.879 66 7 1 748 813 434025782 434025846 2.600000e-10 76.8
15 TraesCS7D01G040800 chr3D 97.674 43 0 1 1444 1486 609964290 609964249 3.370000e-09 73.1
16 TraesCS7D01G040800 chr3D 85.135 74 6 4 759 831 27936567 27936636 1.210000e-08 71.3
17 TraesCS7D01G040800 chr3D 87.500 64 4 2 768 831 610206659 610206600 1.210000e-08 71.3
18 TraesCS7D01G040800 chr3D 84.722 72 7 3 760 831 612889622 612889689 4.360000e-08 69.4
19 TraesCS7D01G040800 chr3D 84.000 75 7 4 757 831 595760641 595760572 1.570000e-07 67.6
20 TraesCS7D01G040800 chr2D 91.835 992 47 12 1466 2440 597973767 597972793 0.000000e+00 1352.0
21 TraesCS7D01G040800 chr2D 89.300 1000 58 19 1466 2441 57151341 57152315 0.000000e+00 1208.0
22 TraesCS7D01G040800 chr2D 87.179 546 58 5 917 1452 565183209 565182666 5.770000e-171 610.0
23 TraesCS7D01G040800 chr2D 81.707 246 29 12 503 745 565183455 565183223 8.910000e-45 191.0
24 TraesCS7D01G040800 chr2D 92.308 104 5 3 830 932 384255272 384255171 7.030000e-31 145.0
25 TraesCS7D01G040800 chr1D 90.818 1002 42 13 1468 2441 471464303 471463324 0.000000e+00 1295.0
26 TraesCS7D01G040800 chr1D 97.778 90 2 0 830 919 197821568 197821657 3.250000e-34 156.0
27 TraesCS7D01G040800 chr1D 93.878 98 5 1 826 922 493352483 493352386 1.960000e-31 147.0
28 TraesCS7D01G040800 chr1D 92.308 52 2 2 761 811 329729671 329729721 3.370000e-09 73.1
29 TraesCS7D01G040800 chr1D 92.308 52 3 1 762 813 340456160 340456210 3.370000e-09 73.1
30 TraesCS7D01G040800 chr1D 89.474 57 4 2 757 813 45495785 45495839 1.210000e-08 71.3
31 TraesCS7D01G040800 chr1D 84.286 70 8 2 762 831 17018397 17018463 5.630000e-07 65.8
32 TraesCS7D01G040800 chr3B 89.749 995 57 14 1466 2441 739583710 739582742 0.000000e+00 1230.0
33 TraesCS7D01G040800 chr3B 93.333 105 3 4 829 929 762449843 762449739 4.200000e-33 152.0
34 TraesCS7D01G040800 chrUn 89.141 838 55 17 1466 2289 278318494 278319309 0.000000e+00 1011.0
35 TraesCS7D01G040800 chr5B 85.211 1021 104 25 1454 2432 528216152 528215137 0.000000e+00 1005.0
36 TraesCS7D01G040800 chr5B 94.792 96 5 0 827 922 183255757 183255852 1.510000e-32 150.0
37 TraesCS7D01G040800 chr5B 86.517 89 8 3 768 856 592915724 592915640 7.190000e-16 95.3
38 TraesCS7D01G040800 chr7B 88.783 838 58 17 1466 2289 654512501 654513316 0.000000e+00 994.0
39 TraesCS7D01G040800 chr7B 94.000 100 6 0 822 921 33806918 33807017 4.200000e-33 152.0
40 TraesCS7D01G040800 chr7B 87.500 64 4 2 768 831 457403042 457402983 1.210000e-08 71.3
41 TraesCS7D01G040800 chr5D 92.135 712 40 10 1466 2164 564830809 564830101 0.000000e+00 990.0
42 TraesCS7D01G040800 chr5D 87.143 70 5 2 762 831 127258306 127258371 2.600000e-10 76.8
43 TraesCS7D01G040800 chr3A 82.724 984 79 44 1489 2440 31601861 31600937 0.000000e+00 791.0
44 TraesCS7D01G040800 chr3A 96.809 94 2 1 827 919 30456410 30456503 3.250000e-34 156.0
45 TraesCS7D01G040800 chr3A 87.143 70 5 2 762 831 427762654 427762719 2.600000e-10 76.8
46 TraesCS7D01G040800 chr7A 91.376 545 44 3 906 1449 20402185 20401643 0.000000e+00 743.0
47 TraesCS7D01G040800 chr7A 86.085 424 37 7 948 1353 20226140 20225721 1.040000e-118 436.0
48 TraesCS7D01G040800 chr7A 81.303 353 57 7 84 434 20402601 20402256 6.650000e-71 278.0
49 TraesCS7D01G040800 chr7A 86.486 74 6 2 758 831 704610974 704610905 7.240000e-11 78.7
50 TraesCS7D01G040800 chr4A 90.842 546 44 4 913 1453 712966129 712965585 0.000000e+00 726.0
51 TraesCS7D01G040800 chr4A 95.789 95 4 0 824 918 708630109 708630015 1.170000e-33 154.0
52 TraesCS7D01G040800 chr4A 94.792 96 5 0 825 920 21221441 21221536 1.510000e-32 150.0
53 TraesCS7D01G040800 chr4A 89.062 64 3 3 768 831 2401087 2401028 2.600000e-10 76.8
54 TraesCS7D01G040800 chr2B 87.546 546 56 4 917 1452 677219141 677218598 2.670000e-174 621.0
55 TraesCS7D01G040800 chr2B 90.085 353 30 3 2094 2441 36854109 36854461 1.030000e-123 453.0
56 TraesCS7D01G040800 chr2A 87.523 545 58 3 918 1452 705784393 705783849 2.670000e-174 621.0
57 TraesCS7D01G040800 chr5A 90.625 352 29 4 2094 2441 13503558 13503207 4.750000e-127 464.0
58 TraesCS7D01G040800 chr6D 96.774 93 3 0 830 922 221219316 221219408 3.250000e-34 156.0
59 TraesCS7D01G040800 chr6D 96.667 90 3 0 829 918 104147681 104147592 1.510000e-32 150.0
60 TraesCS7D01G040800 chr6D 97.674 86 2 0 830 915 382611089 382611174 5.440000e-32 148.0
61 TraesCS7D01G040800 chr6D 96.591 88 3 0 830 917 6507673 6507760 1.960000e-31 147.0
62 TraesCS7D01G040800 chr6D 93.750 96 4 2 827 920 260030287 260030192 2.530000e-30 143.0
63 TraesCS7D01G040800 chr6D 94.565 92 4 1 830 920 291718569 291718660 9.100000e-30 141.0
64 TraesCS7D01G040800 chr6D 89.908 109 10 1 830 937 14202715 14202823 3.270000e-29 139.0
65 TraesCS7D01G040800 chr6D 89.720 107 10 1 830 935 429317714 429317608 4.230000e-28 135.0
66 TraesCS7D01G040800 chr6D 93.878 49 3 0 759 807 7865912 7865960 9.360000e-10 75.0
67 TraesCS7D01G040800 chr6D 92.308 52 3 1 762 813 196357909 196357959 3.370000e-09 73.1
68 TraesCS7D01G040800 chr6D 91.071 56 2 3 759 813 372950011 372950064 3.370000e-09 73.1
69 TraesCS7D01G040800 chr6D 85.714 70 6 3 762 831 7985342 7985407 1.210000e-08 71.3
70 TraesCS7D01G040800 chr6D 88.136 59 4 3 759 815 26706930 26706987 1.570000e-07 67.6
71 TraesCS7D01G040800 chr6D 86.667 60 4 2 772 831 105560538 105560483 2.030000e-06 63.9
72 TraesCS7D01G040800 chr6A 96.774 93 3 0 830 922 262052050 262052142 3.250000e-34 156.0
73 TraesCS7D01G040800 chr6A 83.673 147 20 3 768 914 115012943 115012801 4.230000e-28 135.0
74 TraesCS7D01G040800 chr6B 95.789 95 4 0 830 924 620628869 620628963 1.170000e-33 154.0
75 TraesCS7D01G040800 chr4D 97.727 88 2 0 828 915 461574591 461574678 4.200000e-33 152.0
76 TraesCS7D01G040800 chr4D 96.667 90 3 0 827 916 10274407 10274496 1.510000e-32 150.0
77 TraesCS7D01G040800 chr4D 97.674 86 2 0 829 914 447129512 447129597 5.440000e-32 148.0
78 TraesCS7D01G040800 chr4D 95.604 91 3 1 825 914 416450871 416450781 7.030000e-31 145.0
79 TraesCS7D01G040800 chr4D 94.624 93 4 1 830 921 76446811 76446903 2.530000e-30 143.0
80 TraesCS7D01G040800 chr4D 95.556 90 3 1 827 915 308546304 308546393 2.530000e-30 143.0
81 TraesCS7D01G040800 chr4D 96.512 86 3 0 830 915 335315741 335315826 2.530000e-30 143.0
82 TraesCS7D01G040800 chr4D 96.512 86 3 0 830 915 465765253 465765338 2.530000e-30 143.0
83 TraesCS7D01G040800 chr4D 95.455 88 4 0 830 917 80976542 80976629 9.100000e-30 141.0
84 TraesCS7D01G040800 chr4D 93.617 94 6 0 822 915 211031086 211031179 9.100000e-30 141.0
85 TraesCS7D01G040800 chr4D 90.654 107 9 1 830 935 215187789 215187683 9.100000e-30 141.0
86 TraesCS7D01G040800 chr4D 82.759 145 19 5 770 914 295026651 295026789 9.160000e-25 124.0
87 TraesCS7D01G040800 chr4D 85.714 70 6 2 762 831 455531420 455531485 1.210000e-08 71.3
88 TraesCS7D01G040800 chr4D 90.566 53 4 1 761 813 11573291 11573342 4.360000e-08 69.4
89 TraesCS7D01G040800 chr4D 95.455 44 1 1 770 813 149997747 149997789 4.360000e-08 69.4
90 TraesCS7D01G040800 chr4D 90.385 52 4 1 762 813 3951037 3951087 1.570000e-07 67.6
91 TraesCS7D01G040800 chr4D 93.478 46 2 1 768 813 423945392 423945348 1.570000e-07 67.6
92 TraesCS7D01G040800 chr4D 94.737 38 2 0 762 799 15425296 15425333 2.620000e-05 60.2
93 TraesCS7D01G040800 chr4D 92.500 40 3 0 760 799 320593733 320593772 9.430000e-05 58.4
94 TraesCS7D01G040800 chr4D 94.286 35 2 0 768 802 64347439 64347405 1.000000e-03 54.7
95 TraesCS7D01G040800 chr4B 97.727 88 2 0 830 917 610796102 610796189 4.200000e-33 152.0
96 TraesCS7D01G040800 chr4B 94.792 96 4 1 826 920 664769823 664769728 5.440000e-32 148.0
97 TraesCS7D01G040800 chr4B 91.589 107 5 3 825 927 567976133 567976027 7.030000e-31 145.0
98 TraesCS7D01G040800 chr4B 91.228 57 2 3 758 813 131368298 131368244 9.360000e-10 75.0
99 TraesCS7D01G040800 chr1A 96.739 92 2 1 827 918 580659269 580659359 4.200000e-33 152.0
100 TraesCS7D01G040800 chr1A 85.185 81 8 2 753 833 486342283 486342359 2.010000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G040800 chr7D 20514697 20517137 2440 True 4508.00 4508 100.0000 1 2441 1 chr7D.!!$R2 2440
1 TraesCS7D01G040800 chr7D 27863611 27864606 995 False 1328.00 1328 91.0910 1466 2441 1 chr7D.!!$F2 975
2 TraesCS7D01G040800 chr3D 574611836 574612814 978 True 1450.00 1450 93.5160 1466 2441 1 chr3D.!!$R2 975
3 TraesCS7D01G040800 chr3D 19176126 19177104 978 False 1256.00 1256 90.1100 1466 2441 1 chr3D.!!$F2 975
4 TraesCS7D01G040800 chr3D 609963504 609964290 786 True 436.55 800 92.1970 1444 2439 2 chr3D.!!$R6 995
5 TraesCS7D01G040800 chr2D 597972793 597973767 974 True 1352.00 1352 91.8350 1466 2440 1 chr2D.!!$R2 974
6 TraesCS7D01G040800 chr2D 57151341 57152315 974 False 1208.00 1208 89.3000 1466 2441 1 chr2D.!!$F1 975
7 TraesCS7D01G040800 chr2D 565182666 565183455 789 True 400.50 610 84.4430 503 1452 2 chr2D.!!$R3 949
8 TraesCS7D01G040800 chr1D 471463324 471464303 979 True 1295.00 1295 90.8180 1468 2441 1 chr1D.!!$R1 973
9 TraesCS7D01G040800 chr3B 739582742 739583710 968 True 1230.00 1230 89.7490 1466 2441 1 chr3B.!!$R1 975
10 TraesCS7D01G040800 chrUn 278318494 278319309 815 False 1011.00 1011 89.1410 1466 2289 1 chrUn.!!$F1 823
11 TraesCS7D01G040800 chr5B 528215137 528216152 1015 True 1005.00 1005 85.2110 1454 2432 1 chr5B.!!$R1 978
12 TraesCS7D01G040800 chr7B 654512501 654513316 815 False 994.00 994 88.7830 1466 2289 1 chr7B.!!$F2 823
13 TraesCS7D01G040800 chr5D 564830101 564830809 708 True 990.00 990 92.1350 1466 2164 1 chr5D.!!$R1 698
14 TraesCS7D01G040800 chr3A 31600937 31601861 924 True 791.00 791 82.7240 1489 2440 1 chr3A.!!$R1 951
15 TraesCS7D01G040800 chr7A 20401643 20402601 958 True 510.50 743 86.3395 84 1449 2 chr7A.!!$R3 1365
16 TraesCS7D01G040800 chr4A 712965585 712966129 544 True 726.00 726 90.8420 913 1453 1 chr4A.!!$R3 540
17 TraesCS7D01G040800 chr2B 677218598 677219141 543 True 621.00 621 87.5460 917 1452 1 chr2B.!!$R1 535
18 TraesCS7D01G040800 chr2A 705783849 705784393 544 True 621.00 621 87.5230 918 1452 1 chr2A.!!$R1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 252 0.034089 GGTTGGCTGATTAGTGGGCT 60.034 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 1901 0.09715 GTTAAGCGTGCTTAGGCTGC 59.903 55.0 13.47 6.54 39.93 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.966543 CACGGCCCCCTCAGGTTT 61.967 66.667 0.00 0.00 0.00 3.27
23 24 3.966543 ACGGCCCCCTCAGGTTTG 61.967 66.667 0.00 0.00 0.00 2.93
24 25 3.966543 CGGCCCCCTCAGGTTTGT 61.967 66.667 0.00 0.00 0.00 2.83
25 26 2.598787 CGGCCCCCTCAGGTTTGTA 61.599 63.158 0.00 0.00 0.00 2.41
26 27 1.001269 GGCCCCCTCAGGTTTGTAC 60.001 63.158 0.00 0.00 0.00 2.90
27 28 1.765074 GCCCCCTCAGGTTTGTACA 59.235 57.895 0.00 0.00 0.00 2.90
28 29 0.331616 GCCCCCTCAGGTTTGTACAT 59.668 55.000 0.00 0.00 0.00 2.29
29 30 1.562475 GCCCCCTCAGGTTTGTACATA 59.438 52.381 0.00 0.00 0.00 2.29
30 31 2.025699 GCCCCCTCAGGTTTGTACATAA 60.026 50.000 0.00 0.00 0.00 1.90
31 32 3.617284 CCCCCTCAGGTTTGTACATAAC 58.383 50.000 0.00 4.50 0.00 1.89
32 33 3.265995 CCCCCTCAGGTTTGTACATAACT 59.734 47.826 15.66 8.92 0.00 2.24
33 34 4.514401 CCCCTCAGGTTTGTACATAACTC 58.486 47.826 0.32 2.42 0.00 3.01
34 35 4.514401 CCCTCAGGTTTGTACATAACTCC 58.486 47.826 0.32 0.00 0.00 3.85
35 36 4.181578 CCTCAGGTTTGTACATAACTCCG 58.818 47.826 0.32 0.00 0.00 4.63
36 37 3.592059 TCAGGTTTGTACATAACTCCGC 58.408 45.455 0.32 0.00 0.00 5.54
37 38 2.676342 CAGGTTTGTACATAACTCCGCC 59.324 50.000 0.32 0.00 0.00 6.13
38 39 1.662122 GGTTTGTACATAACTCCGCCG 59.338 52.381 15.66 0.00 0.00 6.46
39 40 2.340337 GTTTGTACATAACTCCGCCGT 58.660 47.619 0.00 0.00 0.00 5.68
40 41 2.738314 GTTTGTACATAACTCCGCCGTT 59.262 45.455 0.00 0.00 0.00 4.44
41 42 1.999048 TGTACATAACTCCGCCGTTG 58.001 50.000 0.00 0.00 0.00 4.10
42 43 1.273048 TGTACATAACTCCGCCGTTGT 59.727 47.619 0.00 0.00 0.00 3.32
43 44 1.657094 GTACATAACTCCGCCGTTGTG 59.343 52.381 9.21 9.21 40.48 3.33
44 45 0.319083 ACATAACTCCGCCGTTGTGA 59.681 50.000 15.11 0.00 37.97 3.58
45 46 0.999406 CATAACTCCGCCGTTGTGAG 59.001 55.000 6.10 0.00 37.97 3.51
46 47 0.606604 ATAACTCCGCCGTTGTGAGT 59.393 50.000 0.00 0.00 40.94 3.41
47 48 0.038892 TAACTCCGCCGTTGTGAGTC 60.039 55.000 0.00 0.00 38.36 3.36
48 49 2.023414 AACTCCGCCGTTGTGAGTCA 62.023 55.000 0.00 0.00 38.36 3.41
49 50 1.079819 CTCCGCCGTTGTGAGTCAT 60.080 57.895 0.00 0.00 0.00 3.06
50 51 0.172578 CTCCGCCGTTGTGAGTCATA 59.827 55.000 0.00 0.00 0.00 2.15
51 52 0.604073 TCCGCCGTTGTGAGTCATAA 59.396 50.000 0.00 0.00 0.00 1.90
52 53 0.719465 CCGCCGTTGTGAGTCATAAC 59.281 55.000 19.65 19.65 33.26 1.89
53 54 1.671850 CCGCCGTTGTGAGTCATAACT 60.672 52.381 24.68 0.00 38.88 2.24
69 70 2.573869 CTCGGGATGAGCACACGT 59.426 61.111 0.00 0.00 38.03 4.49
70 71 1.807226 CTCGGGATGAGCACACGTA 59.193 57.895 0.00 0.00 38.03 3.57
71 72 0.525668 CTCGGGATGAGCACACGTAC 60.526 60.000 0.00 0.00 38.03 3.67
72 73 1.872234 CGGGATGAGCACACGTACG 60.872 63.158 15.01 15.01 0.00 3.67
73 74 1.214589 GGGATGAGCACACGTACGT 59.785 57.895 16.72 16.72 0.00 3.57
74 75 0.801067 GGGATGAGCACACGTACGTC 60.801 60.000 19.94 7.79 0.00 4.34
75 76 0.170561 GGATGAGCACACGTACGTCT 59.829 55.000 19.94 13.14 0.00 4.18
76 77 1.402456 GGATGAGCACACGTACGTCTT 60.402 52.381 19.94 5.48 0.00 3.01
77 78 1.649171 GATGAGCACACGTACGTCTTG 59.351 52.381 19.94 18.89 0.00 3.02
78 79 0.382873 TGAGCACACGTACGTCTTGT 59.617 50.000 19.94 11.25 0.00 3.16
79 80 0.776451 GAGCACACGTACGTCTTGTG 59.224 55.000 24.98 24.98 45.27 3.33
81 82 1.334556 AGCACACGTACGTCTTGTGTA 59.665 47.619 27.67 0.00 44.49 2.90
82 83 1.712350 GCACACGTACGTCTTGTGTAG 59.288 52.381 27.67 15.17 44.49 2.74
87 88 4.224433 CACGTACGTCTTGTGTAGATTGT 58.776 43.478 19.94 0.00 34.79 2.71
90 91 4.614306 CGTACGTCTTGTGTAGATTGTCCA 60.614 45.833 7.22 0.00 34.79 4.02
94 95 4.929211 CGTCTTGTGTAGATTGTCCATCAA 59.071 41.667 0.00 0.00 40.53 2.57
101 102 4.937620 TGTAGATTGTCCATCAAGCAAGAC 59.062 41.667 0.00 0.00 43.88 3.01
109 110 3.519107 TCCATCAAGCAAGACACATAGGA 59.481 43.478 0.00 0.00 0.00 2.94
124 125 6.418101 ACACATAGGAGAACAATGCTTATGT 58.582 36.000 0.00 0.00 0.00 2.29
164 165 3.860641 CTGGGTGTTTTGCTTTTGTTCT 58.139 40.909 0.00 0.00 0.00 3.01
170 171 7.084486 GGGTGTTTTGCTTTTGTTCTAGATAG 58.916 38.462 0.00 0.00 0.00 2.08
172 173 8.135529 GGTGTTTTGCTTTTGTTCTAGATAGTT 58.864 33.333 0.00 0.00 0.00 2.24
179 180 9.890629 TGCTTTTGTTCTAGATAGTTATGTGAT 57.109 29.630 0.00 0.00 0.00 3.06
192 194 9.383519 GATAGTTATGTGATTCCAAGAAAGTCA 57.616 33.333 0.00 0.00 0.00 3.41
193 195 9.911788 ATAGTTATGTGATTCCAAGAAAGTCAT 57.088 29.630 0.00 0.00 0.00 3.06
194 196 8.273780 AGTTATGTGATTCCAAGAAAGTCATC 57.726 34.615 0.00 0.00 0.00 2.92
199 201 2.472695 TCCAAGAAAGTCATCGTGGG 57.527 50.000 8.94 0.00 45.54 4.61
200 202 1.974957 TCCAAGAAAGTCATCGTGGGA 59.025 47.619 8.94 0.00 45.54 4.37
248 250 1.755179 CTGGTTGGCTGATTAGTGGG 58.245 55.000 0.00 0.00 0.00 4.61
249 251 0.323360 TGGTTGGCTGATTAGTGGGC 60.323 55.000 0.00 0.00 0.00 5.36
250 252 0.034089 GGTTGGCTGATTAGTGGGCT 60.034 55.000 0.00 0.00 0.00 5.19
251 253 1.383523 GTTGGCTGATTAGTGGGCTC 58.616 55.000 0.00 0.00 0.00 4.70
252 254 0.991146 TTGGCTGATTAGTGGGCTCA 59.009 50.000 0.00 0.00 0.00 4.26
253 255 0.991146 TGGCTGATTAGTGGGCTCAA 59.009 50.000 0.00 0.00 0.00 3.02
254 256 1.354031 TGGCTGATTAGTGGGCTCAAA 59.646 47.619 0.00 0.00 0.00 2.69
256 258 2.436417 GCTGATTAGTGGGCTCAAACA 58.564 47.619 0.00 0.00 0.00 2.83
258 260 3.255642 GCTGATTAGTGGGCTCAAACAAA 59.744 43.478 0.00 0.00 0.00 2.83
259 261 4.798574 CTGATTAGTGGGCTCAAACAAAC 58.201 43.478 0.00 0.00 0.00 2.93
260 262 4.211125 TGATTAGTGGGCTCAAACAAACA 58.789 39.130 0.00 0.00 0.00 2.83
261 263 4.278170 TGATTAGTGGGCTCAAACAAACAG 59.722 41.667 0.00 0.00 0.00 3.16
262 264 1.402787 AGTGGGCTCAAACAAACAGG 58.597 50.000 0.00 0.00 0.00 4.00
263 265 1.064017 AGTGGGCTCAAACAAACAGGA 60.064 47.619 0.00 0.00 0.00 3.86
264 266 1.067060 GTGGGCTCAAACAAACAGGAC 59.933 52.381 0.00 0.00 0.00 3.85
265 267 0.673985 GGGCTCAAACAAACAGGACC 59.326 55.000 0.00 0.00 0.00 4.46
266 268 1.692411 GGCTCAAACAAACAGGACCT 58.308 50.000 0.00 0.00 0.00 3.85
267 269 2.031870 GGCTCAAACAAACAGGACCTT 58.968 47.619 0.00 0.00 0.00 3.50
268 270 2.430694 GGCTCAAACAAACAGGACCTTT 59.569 45.455 0.00 0.00 0.00 3.11
270 272 3.130340 GCTCAAACAAACAGGACCTTTGA 59.870 43.478 12.06 8.10 33.56 2.69
271 273 4.734695 GCTCAAACAAACAGGACCTTTGAG 60.735 45.833 20.26 20.26 45.58 3.02
272 274 3.699038 TCAAACAAACAGGACCTTTGAGG 59.301 43.478 12.06 2.65 42.49 3.86
275 277 0.178961 AAACAGGACCTTTGAGGCCC 60.179 55.000 0.00 0.00 38.33 5.80
276 278 1.360393 AACAGGACCTTTGAGGCCCA 61.360 55.000 0.00 0.00 40.90 5.36
277 279 1.142688 ACAGGACCTTTGAGGCCCAT 61.143 55.000 0.00 0.00 40.90 4.00
278 280 0.394899 CAGGACCTTTGAGGCCCATC 60.395 60.000 0.00 0.00 40.90 3.51
279 281 0.846427 AGGACCTTTGAGGCCCATCA 60.846 55.000 0.00 0.00 40.90 3.07
280 282 0.039618 GGACCTTTGAGGCCCATCAA 59.960 55.000 0.00 0.00 37.90 2.57
281 283 1.342374 GGACCTTTGAGGCCCATCAAT 60.342 52.381 8.15 0.00 37.90 2.57
282 284 2.460669 GACCTTTGAGGCCCATCAATT 58.539 47.619 8.15 0.00 39.63 2.32
283 285 2.428530 GACCTTTGAGGCCCATCAATTC 59.571 50.000 8.15 2.96 39.63 2.17
284 286 2.043526 ACCTTTGAGGCCCATCAATTCT 59.956 45.455 8.15 0.00 39.63 2.40
297 299 4.261322 CCATCAATTCTGCCCATAAACTCG 60.261 45.833 0.00 0.00 0.00 4.18
304 306 6.861065 TTCTGCCCATAAACTCGAAATATC 57.139 37.500 0.00 0.00 0.00 1.63
311 313 7.041098 GCCCATAAACTCGAAATATCAGTGAAT 60.041 37.037 0.00 0.00 0.00 2.57
330 332 6.438425 AGTGAATTATCTTTTGCATGGGTTCT 59.562 34.615 0.00 0.00 0.00 3.01
333 335 2.380064 TCTTTTGCATGGGTTCTGGT 57.620 45.000 0.00 0.00 0.00 4.00
335 337 3.420893 TCTTTTGCATGGGTTCTGGTAG 58.579 45.455 0.00 0.00 0.00 3.18
377 379 3.361786 ACTTGTTTGTGTAGGCCAAGTT 58.638 40.909 5.01 0.00 42.09 2.66
382 384 5.194432 TGTTTGTGTAGGCCAAGTTAAAGA 58.806 37.500 5.01 0.00 0.00 2.52
386 388 8.354426 GTTTGTGTAGGCCAAGTTAAAGATTTA 58.646 33.333 5.01 0.00 0.00 1.40
410 412 9.764363 TTAATCATGTTAGAGTTACCAGCATAG 57.236 33.333 0.00 0.00 0.00 2.23
411 413 5.601662 TCATGTTAGAGTTACCAGCATAGC 58.398 41.667 0.00 0.00 0.00 2.97
419 421 3.455910 AGTTACCAGCATAGCTTGGATGA 59.544 43.478 9.19 0.00 36.40 2.92
423 425 2.483106 CCAGCATAGCTTGGATGAATCG 59.517 50.000 0.00 0.00 36.40 3.34
431 433 2.481854 CTTGGATGAATCGCTCTCTGG 58.518 52.381 0.00 0.00 0.00 3.86
434 436 0.602372 GATGAATCGCTCTCTGGGGC 60.602 60.000 0.00 0.00 0.00 5.80
435 437 1.340399 ATGAATCGCTCTCTGGGGCA 61.340 55.000 0.00 0.00 0.00 5.36
439 441 0.612229 ATCGCTCTCTGGGGCATATG 59.388 55.000 0.00 0.00 0.00 1.78
440 442 0.469892 TCGCTCTCTGGGGCATATGA 60.470 55.000 6.97 0.00 0.00 2.15
441 443 0.612229 CGCTCTCTGGGGCATATGAT 59.388 55.000 6.97 0.00 0.00 2.45
442 444 1.405256 CGCTCTCTGGGGCATATGATC 60.405 57.143 6.97 0.00 0.00 2.92
443 445 1.627329 GCTCTCTGGGGCATATGATCA 59.373 52.381 6.97 0.00 0.00 2.92
444 446 2.354906 GCTCTCTGGGGCATATGATCAG 60.355 54.545 6.97 10.01 0.00 2.90
445 447 2.905085 CTCTCTGGGGCATATGATCAGT 59.095 50.000 6.97 0.00 0.00 3.41
446 448 3.321039 TCTCTGGGGCATATGATCAGTT 58.679 45.455 6.97 0.00 0.00 3.16
447 449 3.326006 TCTCTGGGGCATATGATCAGTTC 59.674 47.826 6.97 0.00 0.00 3.01
448 450 3.047857 TCTGGGGCATATGATCAGTTCA 58.952 45.455 6.97 0.00 39.12 3.18
449 451 3.654321 TCTGGGGCATATGATCAGTTCAT 59.346 43.478 6.97 0.00 46.86 2.57
450 452 3.756963 CTGGGGCATATGATCAGTTCATG 59.243 47.826 6.97 3.54 44.90 3.07
451 453 2.490903 GGGGCATATGATCAGTTCATGC 59.509 50.000 18.77 18.77 44.90 4.06
452 454 3.418995 GGGCATATGATCAGTTCATGCT 58.581 45.455 22.85 1.56 44.90 3.79
453 455 3.190744 GGGCATATGATCAGTTCATGCTG 59.809 47.826 22.85 3.74 44.90 4.41
454 456 3.366070 GGCATATGATCAGTTCATGCTGC 60.366 47.826 22.85 15.84 44.90 5.25
455 457 3.252458 GCATATGATCAGTTCATGCTGCA 59.748 43.478 19.32 4.13 45.19 4.41
456 458 4.082733 GCATATGATCAGTTCATGCTGCAT 60.083 41.667 9.81 9.81 45.19 3.96
457 459 5.564848 GCATATGATCAGTTCATGCTGCATT 60.565 40.000 13.38 0.00 45.19 3.56
458 460 6.349033 GCATATGATCAGTTCATGCTGCATTA 60.349 38.462 13.38 1.64 45.19 1.90
459 461 7.590279 CATATGATCAGTTCATGCTGCATTAA 58.410 34.615 13.38 8.90 44.90 1.40
460 462 6.650427 ATGATCAGTTCATGCTGCATTAAT 57.350 33.333 13.38 0.30 43.60 1.40
461 463 6.459670 TGATCAGTTCATGCTGCATTAATT 57.540 33.333 13.38 5.54 36.49 1.40
462 464 7.571080 TGATCAGTTCATGCTGCATTAATTA 57.429 32.000 13.38 2.12 36.49 1.40
463 465 7.645402 TGATCAGTTCATGCTGCATTAATTAG 58.355 34.615 13.38 6.05 36.49 1.73
464 466 5.824429 TCAGTTCATGCTGCATTAATTAGC 58.176 37.500 13.38 12.44 36.49 3.09
465 467 5.591472 TCAGTTCATGCTGCATTAATTAGCT 59.409 36.000 13.38 2.22 38.25 3.32
466 468 5.685954 CAGTTCATGCTGCATTAATTAGCTG 59.314 40.000 13.38 10.71 38.25 4.24
467 469 5.591472 AGTTCATGCTGCATTAATTAGCTGA 59.409 36.000 13.38 15.37 38.25 4.26
468 470 5.684550 TCATGCTGCATTAATTAGCTGAG 57.315 39.130 13.38 0.00 38.25 3.35
469 471 5.370679 TCATGCTGCATTAATTAGCTGAGA 58.629 37.500 13.38 0.00 38.25 3.27
470 472 5.824097 TCATGCTGCATTAATTAGCTGAGAA 59.176 36.000 13.38 3.24 38.25 2.87
471 473 6.319405 TCATGCTGCATTAATTAGCTGAGAAA 59.681 34.615 13.38 2.70 38.25 2.52
472 474 5.883661 TGCTGCATTAATTAGCTGAGAAAC 58.116 37.500 17.67 0.32 38.25 2.78
473 475 5.163622 TGCTGCATTAATTAGCTGAGAAACC 60.164 40.000 17.67 0.00 38.25 3.27
474 476 5.163622 GCTGCATTAATTAGCTGAGAAACCA 60.164 40.000 12.18 0.00 34.70 3.67
475 477 6.441093 TGCATTAATTAGCTGAGAAACCAG 57.559 37.500 0.00 0.00 37.23 4.00
476 478 5.945784 TGCATTAATTAGCTGAGAAACCAGT 59.054 36.000 0.00 0.00 36.57 4.00
477 479 7.109501 TGCATTAATTAGCTGAGAAACCAGTA 58.890 34.615 0.00 0.00 36.57 2.74
478 480 7.775093 TGCATTAATTAGCTGAGAAACCAGTAT 59.225 33.333 0.00 0.00 36.57 2.12
479 481 8.072567 GCATTAATTAGCTGAGAAACCAGTATG 58.927 37.037 0.00 0.00 36.57 2.39
525 527 9.695526 TGATATTTCTGAAAACACTCCATTTTG 57.304 29.630 6.95 0.00 29.44 2.44
526 528 9.143631 GATATTTCTGAAAACACTCCATTTTGG 57.856 33.333 6.95 0.00 39.43 3.28
527 529 5.930837 TTCTGAAAACACTCCATTTTGGT 57.069 34.783 0.00 0.00 39.03 3.67
528 530 5.930837 TCTGAAAACACTCCATTTTGGTT 57.069 34.783 0.00 0.00 39.03 3.67
542 544 7.222872 TCCATTTTGGTTGTTTGCTTCAATAT 58.777 30.769 0.00 0.00 39.03 1.28
547 549 8.586570 TTTGGTTGTTTGCTTCAATATACTTG 57.413 30.769 0.00 0.00 0.00 3.16
549 551 7.367285 TGGTTGTTTGCTTCAATATACTTGTC 58.633 34.615 0.00 0.00 0.00 3.18
550 552 7.013750 TGGTTGTTTGCTTCAATATACTTGTCA 59.986 33.333 0.00 0.00 0.00 3.58
599 601 6.040209 TCAGCAATATGTTTGGCTTTGATT 57.960 33.333 0.00 0.00 33.60 2.57
600 602 6.465948 TCAGCAATATGTTTGGCTTTGATTT 58.534 32.000 0.00 0.00 33.60 2.17
601 603 6.935771 TCAGCAATATGTTTGGCTTTGATTTT 59.064 30.769 0.00 0.00 33.60 1.82
605 607 7.413328 GCAATATGTTTGGCTTTGATTTTCCTC 60.413 37.037 0.00 0.00 0.00 3.71
608 610 0.887933 TGGCTTTGATTTTCCTCGGC 59.112 50.000 0.00 0.00 0.00 5.54
615 617 5.049474 GCTTTGATTTTCCTCGGCAATTTTT 60.049 36.000 0.00 0.00 0.00 1.94
650 655 9.813080 GTATATTTGTCTTTTGAGTGTCAAGTC 57.187 33.333 0.00 0.00 37.70 3.01
651 656 8.682936 ATATTTGTCTTTTGAGTGTCAAGTCT 57.317 30.769 0.00 0.00 37.70 3.24
653 658 7.915293 TTTGTCTTTTGAGTGTCAAGTCTTA 57.085 32.000 0.00 0.00 37.70 2.10
667 672 7.066284 GTGTCAAGTCTTAGTGATTATTGCCAT 59.934 37.037 0.00 0.00 0.00 4.40
668 673 7.280876 TGTCAAGTCTTAGTGATTATTGCCATC 59.719 37.037 0.00 0.00 0.00 3.51
669 674 7.497249 GTCAAGTCTTAGTGATTATTGCCATCT 59.503 37.037 0.00 0.00 0.00 2.90
672 677 7.800092 AGTCTTAGTGATTATTGCCATCTCTT 58.200 34.615 0.00 0.00 0.00 2.85
678 683 6.435277 AGTGATTATTGCCATCTCTTTGTGTT 59.565 34.615 0.00 0.00 0.00 3.32
679 684 7.611467 AGTGATTATTGCCATCTCTTTGTGTTA 59.389 33.333 0.00 0.00 0.00 2.41
683 688 3.674997 TGCCATCTCTTTGTGTTAGGAC 58.325 45.455 0.00 0.00 0.00 3.85
742 747 3.717400 TCTGAGACATTATCACTCGGC 57.283 47.619 0.00 0.00 37.08 5.54
743 748 3.291584 TCTGAGACATTATCACTCGGCT 58.708 45.455 0.00 0.00 37.08 5.52
744 749 4.461198 TCTGAGACATTATCACTCGGCTA 58.539 43.478 0.00 0.00 37.08 3.93
745 750 4.517075 TCTGAGACATTATCACTCGGCTAG 59.483 45.833 0.00 0.00 37.08 3.42
746 751 4.207955 TGAGACATTATCACTCGGCTAGT 58.792 43.478 0.00 0.00 39.81 2.57
747 752 4.645136 TGAGACATTATCACTCGGCTAGTT 59.355 41.667 0.00 0.00 35.76 2.24
748 753 5.127194 TGAGACATTATCACTCGGCTAGTTT 59.873 40.000 0.00 0.00 35.76 2.66
749 754 5.352284 AGACATTATCACTCGGCTAGTTTG 58.648 41.667 0.00 0.00 35.76 2.93
760 765 2.006888 GGCTAGTTTGACGCTGCAATA 58.993 47.619 0.00 0.00 0.00 1.90
761 766 2.614057 GGCTAGTTTGACGCTGCAATAT 59.386 45.455 0.00 0.00 0.00 1.28
764 769 4.508124 GCTAGTTTGACGCTGCAATATACT 59.492 41.667 0.00 0.00 0.00 2.12
765 770 5.006746 GCTAGTTTGACGCTGCAATATACTT 59.993 40.000 0.00 0.00 0.00 2.24
766 771 5.221891 AGTTTGACGCTGCAATATACTTG 57.778 39.130 0.00 0.00 0.00 3.16
767 772 3.673746 TTGACGCTGCAATATACTTGC 57.326 42.857 0.00 10.94 45.11 4.01
768 773 2.905075 TGACGCTGCAATATACTTGCT 58.095 42.857 15.94 2.26 45.13 3.91
769 774 2.866156 TGACGCTGCAATATACTTGCTC 59.134 45.455 15.94 9.09 45.13 4.26
770 775 2.213499 ACGCTGCAATATACTTGCTCC 58.787 47.619 15.94 9.13 45.13 4.70
771 776 1.193203 CGCTGCAATATACTTGCTCCG 59.807 52.381 15.94 14.19 45.13 4.63
772 777 2.213499 GCTGCAATATACTTGCTCCGT 58.787 47.619 15.94 0.00 45.13 4.69
773 778 3.390135 GCTGCAATATACTTGCTCCGTA 58.610 45.455 15.94 0.00 45.13 4.02
774 779 3.807622 GCTGCAATATACTTGCTCCGTAA 59.192 43.478 15.94 1.12 45.13 3.18
775 780 4.272504 GCTGCAATATACTTGCTCCGTAAA 59.727 41.667 15.94 0.63 45.13 2.01
776 781 5.559035 GCTGCAATATACTTGCTCCGTAAAG 60.559 44.000 15.94 8.13 45.13 1.85
777 782 5.666462 TGCAATATACTTGCTCCGTAAAGA 58.334 37.500 15.94 0.00 45.13 2.52
778 783 6.110033 TGCAATATACTTGCTCCGTAAAGAA 58.890 36.000 15.94 0.00 45.13 2.52
779 784 6.596106 TGCAATATACTTGCTCCGTAAAGAAA 59.404 34.615 15.94 0.00 45.13 2.52
780 785 7.282224 TGCAATATACTTGCTCCGTAAAGAAAT 59.718 33.333 15.94 0.00 45.13 2.17
781 786 8.770828 GCAATATACTTGCTCCGTAAAGAAATA 58.229 33.333 10.70 0.00 41.87 1.40
787 792 8.649973 ACTTGCTCCGTAAAGAAATATAAGAG 57.350 34.615 0.00 0.00 0.00 2.85
788 793 7.224949 ACTTGCTCCGTAAAGAAATATAAGAGC 59.775 37.037 0.00 0.00 0.00 4.09
789 794 6.578944 TGCTCCGTAAAGAAATATAAGAGCA 58.421 36.000 6.76 6.76 38.27 4.26
790 795 7.217200 TGCTCCGTAAAGAAATATAAGAGCAT 58.783 34.615 6.76 0.00 36.13 3.79
791 796 7.715249 TGCTCCGTAAAGAAATATAAGAGCATT 59.285 33.333 6.76 0.00 36.13 3.56
792 797 8.560374 GCTCCGTAAAGAAATATAAGAGCATTT 58.440 33.333 0.00 0.00 0.00 2.32
834 839 9.685828 GTGATGATCTAGACACTTTTATACTCC 57.314 37.037 0.00 0.00 0.00 3.85
835 840 8.861086 TGATGATCTAGACACTTTTATACTCCC 58.139 37.037 0.00 0.00 0.00 4.30
836 841 9.084533 GATGATCTAGACACTTTTATACTCCCT 57.915 37.037 0.00 0.00 0.00 4.20
837 842 8.466617 TGATCTAGACACTTTTATACTCCCTC 57.533 38.462 0.00 0.00 0.00 4.30
838 843 7.506261 TGATCTAGACACTTTTATACTCCCTCC 59.494 40.741 0.00 0.00 0.00 4.30
839 844 5.826737 TCTAGACACTTTTATACTCCCTCCG 59.173 44.000 0.00 0.00 0.00 4.63
840 845 4.351127 AGACACTTTTATACTCCCTCCGT 58.649 43.478 0.00 0.00 0.00 4.69
841 846 5.513233 AGACACTTTTATACTCCCTCCGTA 58.487 41.667 0.00 0.00 0.00 4.02
842 847 5.954150 AGACACTTTTATACTCCCTCCGTAA 59.046 40.000 0.00 0.00 0.00 3.18
843 848 6.438425 AGACACTTTTATACTCCCTCCGTAAA 59.562 38.462 0.00 0.00 0.00 2.01
844 849 6.401394 ACACTTTTATACTCCCTCCGTAAAC 58.599 40.000 0.00 0.00 0.00 2.01
845 850 6.212187 ACACTTTTATACTCCCTCCGTAAACT 59.788 38.462 0.00 0.00 0.00 2.66
846 851 7.397192 ACACTTTTATACTCCCTCCGTAAACTA 59.603 37.037 0.00 0.00 0.00 2.24
847 852 8.253113 CACTTTTATACTCCCTCCGTAAACTAA 58.747 37.037 0.00 0.00 0.00 2.24
848 853 8.985922 ACTTTTATACTCCCTCCGTAAACTAAT 58.014 33.333 0.00 0.00 0.00 1.73
855 860 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
856 861 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
857 862 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
858 863 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
859 864 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
860 865 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
861 866 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
862 867 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
877 882 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
878 883 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
879 884 9.224058 GAGCGTTTAGAATACTAAAGTAGTGAG 57.776 37.037 0.00 0.00 45.42 3.51
880 885 7.701501 AGCGTTTAGAATACTAAAGTAGTGAGC 59.298 37.037 0.00 0.00 45.42 4.26
881 886 7.701501 GCGTTTAGAATACTAAAGTAGTGAGCT 59.298 37.037 0.00 0.00 45.42 4.09
886 891 8.145316 AGAATACTAAAGTAGTGAGCTAGACG 57.855 38.462 0.00 0.00 39.81 4.18
887 892 4.619437 ACTAAAGTAGTGAGCTAGACGC 57.381 45.455 0.00 0.00 37.69 5.19
1008 1034 3.555586 GCATCACAAGGAAAATGGCAAGT 60.556 43.478 0.00 0.00 0.00 3.16
1020 1046 1.127567 TGGCAAGTAGAGCAGGTGGT 61.128 55.000 0.00 0.00 0.00 4.16
1142 1178 3.070734 AGTGAGCACTCTCTTGTGATTGT 59.929 43.478 0.00 0.00 40.12 2.71
1188 1224 1.202580 AGGCGGTGCTACAGAATGATC 60.203 52.381 0.00 0.00 39.69 2.92
1221 1257 2.093235 GGTTGAGAGGACCATCAAGGAG 60.093 54.545 11.34 0.00 41.22 3.69
1257 1293 2.045926 CGGAACAAGGAGGGCCTG 60.046 66.667 12.95 0.00 46.28 4.85
1276 1312 4.379243 AAGAGGTGGTGGCTCGCG 62.379 66.667 0.00 0.00 0.00 5.87
1296 1332 0.616111 TGAAGGAGGCTCTGGAGACC 60.616 60.000 15.23 0.00 37.06 3.85
1422 1461 1.109323 GTGTTCTTGTTGGCCCTGCT 61.109 55.000 0.00 0.00 0.00 4.24
1424 1464 1.531365 TTCTTGTTGGCCCTGCTGG 60.531 57.895 0.00 1.89 37.09 4.85
1437 1477 1.895966 TGCTGGCAGTAGAGCAGAG 59.104 57.895 17.16 0.00 40.30 3.35
1486 1528 1.077930 GGCCTTTAGTCCCGGTTCC 60.078 63.158 0.00 0.00 0.00 3.62
1511 1553 2.245582 CCGGGACTAAAGGGTCGATAT 58.754 52.381 0.00 0.00 37.12 1.63
1517 1559 6.462067 CGGGACTAAAGGGTCGATATTAAAGT 60.462 42.308 0.00 0.00 37.12 2.66
1521 1564 8.302515 ACTAAAGGGTCGATATTAAAGTCTCA 57.697 34.615 0.00 0.00 0.00 3.27
1715 1793 9.359653 CAATTTAATCTCTAATCACCCCTCATT 57.640 33.333 0.00 0.00 0.00 2.57
1740 1837 9.959721 TTACTGCTCAATTTAACCTCTAATCTT 57.040 29.630 0.00 0.00 0.00 2.40
1778 1882 1.269703 ATCTAACTTCCCGGCCGGTT 61.270 55.000 40.52 29.81 0.00 4.44
1797 1901 3.385111 GGTTACCCATCCTCTCACTACTG 59.615 52.174 0.00 0.00 0.00 2.74
1804 1908 1.285078 TCCTCTCACTACTGCAGCCTA 59.715 52.381 15.27 0.00 0.00 3.93
1830 1934 5.104374 CACGCTTAACTTTCGGGTTCTATA 58.896 41.667 0.00 0.00 0.00 1.31
1953 2057 6.362283 CGTTTCACTGTTTGAGTTTGAAACTT 59.638 34.615 12.37 0.00 41.32 2.66
2171 2332 4.473444 ACCACAGTTTGACCAGATTTGAT 58.527 39.130 0.00 0.00 0.00 2.57
2174 2335 5.335426 CCACAGTTTGACCAGATTTGATCAG 60.335 44.000 0.00 0.00 0.00 2.90
2200 2382 7.337938 AGTTTGACCAGATTTGACCAAAATTT 58.662 30.769 0.00 0.00 38.64 1.82
2201 2383 7.828717 AGTTTGACCAGATTTGACCAAAATTTT 59.171 29.630 0.00 0.00 38.64 1.82
2298 2504 9.968743 GAATAAGTAGTTTGACCTGATTTAACG 57.031 33.333 0.00 0.00 0.00 3.18
2414 2624 1.295792 GGATGCGGATTTTCGTGCTA 58.704 50.000 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.966543 AAACCTGAGGGGGCCGTG 61.967 66.667 2.38 0.00 40.03 4.94
6 7 3.966543 CAAACCTGAGGGGGCCGT 61.967 66.667 2.38 0.00 40.03 5.68
7 8 2.598787 TACAAACCTGAGGGGGCCG 61.599 63.158 2.38 0.00 40.03 6.13
8 9 1.001269 GTACAAACCTGAGGGGGCC 60.001 63.158 2.38 0.00 40.03 5.80
9 10 0.331616 ATGTACAAACCTGAGGGGGC 59.668 55.000 2.38 0.00 40.03 5.80
10 11 3.265995 AGTTATGTACAAACCTGAGGGGG 59.734 47.826 2.38 0.00 40.03 5.40
11 12 4.514401 GAGTTATGTACAAACCTGAGGGG 58.486 47.826 2.38 0.00 41.89 4.79
12 13 4.514401 GGAGTTATGTACAAACCTGAGGG 58.486 47.826 2.38 0.00 38.88 4.30
13 14 4.181578 CGGAGTTATGTACAAACCTGAGG 58.818 47.826 0.00 0.00 0.00 3.86
14 15 3.617263 GCGGAGTTATGTACAAACCTGAG 59.383 47.826 0.00 0.69 0.00 3.35
15 16 3.592059 GCGGAGTTATGTACAAACCTGA 58.408 45.455 0.00 0.00 0.00 3.86
16 17 2.676342 GGCGGAGTTATGTACAAACCTG 59.324 50.000 0.00 6.72 0.00 4.00
17 18 2.675889 CGGCGGAGTTATGTACAAACCT 60.676 50.000 0.00 0.00 0.00 3.50
18 19 1.662122 CGGCGGAGTTATGTACAAACC 59.338 52.381 0.00 0.00 0.00 3.27
19 20 2.340337 ACGGCGGAGTTATGTACAAAC 58.660 47.619 13.24 6.25 0.00 2.93
20 21 2.737783 CAACGGCGGAGTTATGTACAAA 59.262 45.455 13.24 0.00 32.35 2.83
21 22 2.288948 ACAACGGCGGAGTTATGTACAA 60.289 45.455 13.24 0.00 32.35 2.41
22 23 1.273048 ACAACGGCGGAGTTATGTACA 59.727 47.619 13.24 0.00 32.35 2.90
23 24 1.657094 CACAACGGCGGAGTTATGTAC 59.343 52.381 13.24 0.00 32.35 2.90
24 25 1.545136 TCACAACGGCGGAGTTATGTA 59.455 47.619 13.24 0.00 31.12 2.29
25 26 0.319083 TCACAACGGCGGAGTTATGT 59.681 50.000 13.24 3.38 31.12 2.29
26 27 0.999406 CTCACAACGGCGGAGTTATG 59.001 55.000 13.24 0.00 32.35 1.90
27 28 0.606604 ACTCACAACGGCGGAGTTAT 59.393 50.000 13.24 0.00 38.69 1.89
28 29 0.038892 GACTCACAACGGCGGAGTTA 60.039 55.000 13.24 0.00 41.68 2.24
29 30 1.300697 GACTCACAACGGCGGAGTT 60.301 57.895 13.24 0.00 41.68 3.01
30 31 1.816863 ATGACTCACAACGGCGGAGT 61.817 55.000 13.24 14.19 44.12 3.85
31 32 0.172578 TATGACTCACAACGGCGGAG 59.827 55.000 13.24 10.69 34.85 4.63
32 33 0.604073 TTATGACTCACAACGGCGGA 59.396 50.000 13.24 0.00 0.00 5.54
33 34 0.719465 GTTATGACTCACAACGGCGG 59.281 55.000 13.24 0.00 0.00 6.13
34 35 1.710013 AGTTATGACTCACAACGGCG 58.290 50.000 4.80 4.80 0.00 6.46
44 45 2.101582 GTGCTCATCCCGAGTTATGACT 59.898 50.000 0.00 0.00 44.33 3.41
45 46 2.159099 TGTGCTCATCCCGAGTTATGAC 60.159 50.000 0.00 0.00 44.33 3.06
46 47 2.107366 TGTGCTCATCCCGAGTTATGA 58.893 47.619 0.00 0.00 44.33 2.15
47 48 2.205074 GTGTGCTCATCCCGAGTTATG 58.795 52.381 0.00 0.00 44.33 1.90
48 49 1.202417 CGTGTGCTCATCCCGAGTTAT 60.202 52.381 0.00 0.00 44.33 1.89
49 50 0.172578 CGTGTGCTCATCCCGAGTTA 59.827 55.000 0.00 0.00 44.33 2.24
50 51 1.079819 CGTGTGCTCATCCCGAGTT 60.080 57.895 0.00 0.00 44.33 3.01
51 52 0.963856 TACGTGTGCTCATCCCGAGT 60.964 55.000 0.00 0.00 44.33 4.18
52 53 0.525668 GTACGTGTGCTCATCCCGAG 60.526 60.000 0.00 0.00 45.37 4.63
53 54 1.509463 GTACGTGTGCTCATCCCGA 59.491 57.895 0.00 0.00 0.00 5.14
54 55 1.872234 CGTACGTGTGCTCATCCCG 60.872 63.158 7.22 0.00 0.00 5.14
55 56 0.801067 GACGTACGTGTGCTCATCCC 60.801 60.000 28.16 2.86 0.00 3.85
56 57 0.170561 AGACGTACGTGTGCTCATCC 59.829 55.000 28.16 7.79 0.00 3.51
57 58 1.649171 CAAGACGTACGTGTGCTCATC 59.351 52.381 28.16 8.58 0.00 2.92
58 59 1.000607 ACAAGACGTACGTGTGCTCAT 60.001 47.619 28.16 2.79 39.50 2.90
59 60 0.382873 ACAAGACGTACGTGTGCTCA 59.617 50.000 28.16 0.00 39.50 4.26
60 61 3.174790 ACAAGACGTACGTGTGCTC 57.825 52.632 28.16 11.00 39.50 4.26
64 65 4.224433 CAATCTACACAAGACGTACGTGT 58.776 43.478 28.16 20.48 45.42 4.49
65 66 4.224433 ACAATCTACACAAGACGTACGTG 58.776 43.478 28.16 14.38 36.93 4.49
66 67 4.470462 GACAATCTACACAAGACGTACGT 58.530 43.478 23.04 23.04 36.93 3.57
67 68 3.850273 GGACAATCTACACAAGACGTACG 59.150 47.826 15.01 15.01 36.93 3.67
68 69 4.801891 TGGACAATCTACACAAGACGTAC 58.198 43.478 0.00 0.00 36.93 3.67
69 70 5.184287 TGATGGACAATCTACACAAGACGTA 59.816 40.000 0.00 0.00 36.93 3.57
70 71 4.021456 TGATGGACAATCTACACAAGACGT 60.021 41.667 0.00 0.00 36.93 4.34
71 72 4.494484 TGATGGACAATCTACACAAGACG 58.506 43.478 0.00 0.00 36.93 4.18
72 73 5.163814 GCTTGATGGACAATCTACACAAGAC 60.164 44.000 0.00 0.00 36.93 3.01
73 74 4.937620 GCTTGATGGACAATCTACACAAGA 59.062 41.667 0.00 0.00 37.88 3.02
74 75 4.696877 TGCTTGATGGACAATCTACACAAG 59.303 41.667 0.00 0.00 37.88 3.16
75 76 4.650734 TGCTTGATGGACAATCTACACAA 58.349 39.130 0.00 0.00 37.88 3.33
76 77 4.284829 TGCTTGATGGACAATCTACACA 57.715 40.909 0.00 0.00 37.88 3.72
77 78 4.937620 TCTTGCTTGATGGACAATCTACAC 59.062 41.667 0.00 0.00 37.88 2.90
78 79 4.937620 GTCTTGCTTGATGGACAATCTACA 59.062 41.667 0.00 0.00 37.88 2.74
79 80 4.937620 TGTCTTGCTTGATGGACAATCTAC 59.062 41.667 0.00 0.00 37.88 2.59
80 81 4.937620 GTGTCTTGCTTGATGGACAATCTA 59.062 41.667 0.00 0.00 39.83 1.98
81 82 3.755378 GTGTCTTGCTTGATGGACAATCT 59.245 43.478 0.00 0.00 39.83 2.40
82 83 3.503363 TGTGTCTTGCTTGATGGACAATC 59.497 43.478 0.00 0.00 39.83 2.67
87 88 3.519107 TCCTATGTGTCTTGCTTGATGGA 59.481 43.478 0.00 0.00 0.00 3.41
90 91 5.181748 GTTCTCCTATGTGTCTTGCTTGAT 58.818 41.667 0.00 0.00 0.00 2.57
94 95 4.623932 TTGTTCTCCTATGTGTCTTGCT 57.376 40.909 0.00 0.00 0.00 3.91
101 102 6.539826 TGACATAAGCATTGTTCTCCTATGTG 59.460 38.462 0.00 0.00 0.00 3.21
109 110 9.836864 TGACTATTATGACATAAGCATTGTTCT 57.163 29.630 13.15 0.00 0.00 3.01
124 125 5.547666 ACCCAGCCATACATGACTATTATGA 59.452 40.000 0.00 0.00 0.00 2.15
170 171 7.148407 ACGATGACTTTCTTGGAATCACATAAC 60.148 37.037 0.00 0.00 0.00 1.89
172 173 6.313658 CACGATGACTTTCTTGGAATCACATA 59.686 38.462 0.00 0.00 0.00 2.29
179 180 2.370519 TCCCACGATGACTTTCTTGGAA 59.629 45.455 0.00 0.00 37.24 3.53
186 188 2.496899 AGCAATCCCACGATGACTTT 57.503 45.000 0.00 0.00 0.00 2.66
192 194 1.486310 TGAGCTAAGCAATCCCACGAT 59.514 47.619 0.00 0.00 0.00 3.73
193 195 0.901827 TGAGCTAAGCAATCCCACGA 59.098 50.000 0.00 0.00 0.00 4.35
194 196 1.737838 TTGAGCTAAGCAATCCCACG 58.262 50.000 0.00 0.00 0.00 4.94
223 225 0.971386 AATCAGCCAACCAGCAAAGG 59.029 50.000 0.00 0.00 34.23 3.11
226 228 2.161855 CACTAATCAGCCAACCAGCAA 58.838 47.619 0.00 0.00 34.23 3.91
228 230 1.098050 CCACTAATCAGCCAACCAGC 58.902 55.000 0.00 0.00 0.00 4.85
229 231 1.755179 CCCACTAATCAGCCAACCAG 58.245 55.000 0.00 0.00 0.00 4.00
248 250 3.130340 TCAAAGGTCCTGTTTGTTTGAGC 59.870 43.478 0.00 0.00 36.47 4.26
249 251 4.925068 CTCAAAGGTCCTGTTTGTTTGAG 58.075 43.478 12.29 12.29 44.45 3.02
250 252 3.699038 CCTCAAAGGTCCTGTTTGTTTGA 59.301 43.478 0.00 0.00 36.47 2.69
251 253 3.737972 GCCTCAAAGGTCCTGTTTGTTTG 60.738 47.826 0.00 0.00 37.80 2.93
252 254 2.430694 GCCTCAAAGGTCCTGTTTGTTT 59.569 45.455 0.00 0.00 37.80 2.83
253 255 2.031870 GCCTCAAAGGTCCTGTTTGTT 58.968 47.619 0.00 0.00 37.80 2.83
254 256 1.692411 GCCTCAAAGGTCCTGTTTGT 58.308 50.000 0.00 0.00 37.80 2.83
256 258 3.439440 GGCCTCAAAGGTCCTGTTT 57.561 52.632 0.00 0.00 37.80 2.83
262 264 2.149973 ATTGATGGGCCTCAAAGGTC 57.850 50.000 18.11 0.00 39.92 3.85
263 265 2.043526 AGAATTGATGGGCCTCAAAGGT 59.956 45.455 18.11 9.66 38.55 3.50
264 266 2.429610 CAGAATTGATGGGCCTCAAAGG 59.570 50.000 18.11 7.99 38.55 3.11
265 267 2.159142 GCAGAATTGATGGGCCTCAAAG 60.159 50.000 18.11 11.59 38.55 2.77
266 268 1.826720 GCAGAATTGATGGGCCTCAAA 59.173 47.619 18.11 5.39 38.55 2.69
267 269 1.477553 GCAGAATTGATGGGCCTCAA 58.522 50.000 17.01 17.01 39.35 3.02
268 270 0.396139 GGCAGAATTGATGGGCCTCA 60.396 55.000 4.53 3.07 41.39 3.86
270 272 1.075748 GGGCAGAATTGATGGGCCT 60.076 57.895 4.53 0.00 44.04 5.19
271 273 0.761702 ATGGGCAGAATTGATGGGCC 60.762 55.000 0.00 0.00 45.45 5.80
272 274 1.999648 TATGGGCAGAATTGATGGGC 58.000 50.000 0.00 0.00 0.00 5.36
275 277 4.576053 TCGAGTTTATGGGCAGAATTGATG 59.424 41.667 0.00 0.00 0.00 3.07
276 278 4.780815 TCGAGTTTATGGGCAGAATTGAT 58.219 39.130 0.00 0.00 0.00 2.57
277 279 4.214986 TCGAGTTTATGGGCAGAATTGA 57.785 40.909 0.00 0.00 0.00 2.57
278 280 4.963276 TTCGAGTTTATGGGCAGAATTG 57.037 40.909 0.00 0.00 0.00 2.32
279 281 7.502226 TGATATTTCGAGTTTATGGGCAGAATT 59.498 33.333 0.00 0.00 0.00 2.17
280 282 6.998074 TGATATTTCGAGTTTATGGGCAGAAT 59.002 34.615 0.00 0.00 0.00 2.40
281 283 6.353323 TGATATTTCGAGTTTATGGGCAGAA 58.647 36.000 0.00 0.00 0.00 3.02
282 284 5.924356 TGATATTTCGAGTTTATGGGCAGA 58.076 37.500 0.00 0.00 0.00 4.26
283 285 5.760253 ACTGATATTTCGAGTTTATGGGCAG 59.240 40.000 0.00 0.00 0.00 4.85
284 286 5.527214 CACTGATATTTCGAGTTTATGGGCA 59.473 40.000 0.00 0.00 0.00 5.36
304 306 5.969423 ACCCATGCAAAAGATAATTCACTG 58.031 37.500 0.00 0.00 0.00 3.66
311 313 4.415596 ACCAGAACCCATGCAAAAGATAA 58.584 39.130 0.00 0.00 0.00 1.75
320 322 0.035056 ACTGCTACCAGAACCCATGC 60.035 55.000 0.00 0.00 41.77 4.06
324 326 4.065789 GCATATAACTGCTACCAGAACCC 58.934 47.826 0.00 0.00 41.77 4.11
330 332 3.244215 GCTCTGGCATATAACTGCTACCA 60.244 47.826 0.00 0.00 41.95 3.25
353 355 5.137551 ACTTGGCCTACACAAACAAGTATT 58.862 37.500 3.32 0.00 46.88 1.89
354 356 4.725490 ACTTGGCCTACACAAACAAGTAT 58.275 39.130 3.32 0.00 46.88 2.12
382 384 9.632638 ATGCTGGTAACTCTAACATGATTAAAT 57.367 29.630 0.00 0.00 37.61 1.40
386 388 6.708054 GCTATGCTGGTAACTCTAACATGATT 59.292 38.462 0.00 0.00 37.61 2.57
396 398 3.543680 TCCAAGCTATGCTGGTAACTC 57.456 47.619 2.14 0.00 39.62 3.01
402 404 2.483106 CGATTCATCCAAGCTATGCTGG 59.517 50.000 0.00 0.00 39.62 4.85
405 407 2.149578 AGCGATTCATCCAAGCTATGC 58.850 47.619 0.00 0.00 36.28 3.14
410 412 1.865970 CAGAGAGCGATTCATCCAAGC 59.134 52.381 0.00 0.00 0.00 4.01
411 413 2.481854 CCAGAGAGCGATTCATCCAAG 58.518 52.381 0.00 0.00 0.00 3.61
419 421 1.002888 CATATGCCCCAGAGAGCGATT 59.997 52.381 0.00 0.00 0.00 3.34
423 425 1.627329 TGATCATATGCCCCAGAGAGC 59.373 52.381 0.00 0.00 0.00 4.09
439 441 6.581542 GCTAATTAATGCAGCATGAACTGATC 59.418 38.462 9.18 0.00 40.25 2.92
440 442 6.264744 AGCTAATTAATGCAGCATGAACTGAT 59.735 34.615 9.18 0.00 40.25 2.90
441 443 5.591472 AGCTAATTAATGCAGCATGAACTGA 59.409 36.000 9.18 0.00 40.25 3.41
442 444 5.685954 CAGCTAATTAATGCAGCATGAACTG 59.314 40.000 9.18 7.48 39.69 3.16
443 445 5.591472 TCAGCTAATTAATGCAGCATGAACT 59.409 36.000 9.18 0.00 39.69 3.01
444 446 5.824429 TCAGCTAATTAATGCAGCATGAAC 58.176 37.500 9.18 0.00 39.69 3.18
445 447 5.824097 TCTCAGCTAATTAATGCAGCATGAA 59.176 36.000 9.18 8.38 39.69 2.57
446 448 5.370679 TCTCAGCTAATTAATGCAGCATGA 58.629 37.500 9.18 17.12 39.69 3.07
447 449 5.684550 TCTCAGCTAATTAATGCAGCATG 57.315 39.130 9.18 14.91 37.78 4.06
448 450 6.460676 GGTTTCTCAGCTAATTAATGCAGCAT 60.461 38.462 19.23 0.52 37.78 3.79
449 451 5.163622 GGTTTCTCAGCTAATTAATGCAGCA 60.164 40.000 19.23 0.00 37.78 4.41
450 452 5.163622 TGGTTTCTCAGCTAATTAATGCAGC 60.164 40.000 12.35 12.35 35.49 5.25
451 453 6.094603 ACTGGTTTCTCAGCTAATTAATGCAG 59.905 38.462 0.00 0.00 38.26 4.41
452 454 5.945784 ACTGGTTTCTCAGCTAATTAATGCA 59.054 36.000 0.00 0.00 38.26 3.96
453 455 6.442513 ACTGGTTTCTCAGCTAATTAATGC 57.557 37.500 0.00 0.00 38.26 3.56
454 456 8.562892 CCATACTGGTTTCTCAGCTAATTAATG 58.437 37.037 0.00 0.00 38.26 1.90
455 457 8.494433 TCCATACTGGTTTCTCAGCTAATTAAT 58.506 33.333 0.00 0.00 39.03 1.40
456 458 7.857456 TCCATACTGGTTTCTCAGCTAATTAA 58.143 34.615 0.00 0.00 39.03 1.40
457 459 7.432148 TCCATACTGGTTTCTCAGCTAATTA 57.568 36.000 0.00 0.00 39.03 1.40
458 460 6.313519 TCCATACTGGTTTCTCAGCTAATT 57.686 37.500 0.00 0.00 39.03 1.40
459 461 5.957771 TCCATACTGGTTTCTCAGCTAAT 57.042 39.130 0.00 0.00 39.03 1.73
460 462 5.957771 ATCCATACTGGTTTCTCAGCTAA 57.042 39.130 0.00 0.00 39.03 3.09
461 463 5.957771 AATCCATACTGGTTTCTCAGCTA 57.042 39.130 0.00 0.00 39.03 3.32
462 464 4.851639 AATCCATACTGGTTTCTCAGCT 57.148 40.909 0.00 0.00 39.03 4.24
463 465 6.767902 TCATAAATCCATACTGGTTTCTCAGC 59.232 38.462 0.00 0.00 39.03 4.26
464 466 8.616076 GTTCATAAATCCATACTGGTTTCTCAG 58.384 37.037 0.00 0.00 39.03 3.35
465 467 8.106462 TGTTCATAAATCCATACTGGTTTCTCA 58.894 33.333 0.00 0.00 39.03 3.27
466 468 8.506168 TGTTCATAAATCCATACTGGTTTCTC 57.494 34.615 0.00 0.00 39.03 2.87
467 469 9.479549 AATGTTCATAAATCCATACTGGTTTCT 57.520 29.630 0.00 0.00 39.03 2.52
468 470 9.520204 CAATGTTCATAAATCCATACTGGTTTC 57.480 33.333 0.00 0.00 39.03 2.78
469 471 7.981225 GCAATGTTCATAAATCCATACTGGTTT 59.019 33.333 0.00 0.00 39.03 3.27
470 472 7.342799 AGCAATGTTCATAAATCCATACTGGTT 59.657 33.333 0.00 0.00 39.03 3.67
471 473 6.835488 AGCAATGTTCATAAATCCATACTGGT 59.165 34.615 0.00 0.00 39.03 4.00
472 474 7.281040 AGCAATGTTCATAAATCCATACTGG 57.719 36.000 0.00 0.00 39.43 4.00
493 495 8.677300 GGAGTGTTTTCAGAAATATCATTAGCA 58.323 33.333 0.00 0.00 0.00 3.49
494 496 8.677300 TGGAGTGTTTTCAGAAATATCATTAGC 58.323 33.333 0.00 0.00 0.00 3.09
499 501 9.695526 CAAAATGGAGTGTTTTCAGAAATATCA 57.304 29.630 0.00 0.00 0.00 2.15
500 502 9.143631 CCAAAATGGAGTGTTTTCAGAAATATC 57.856 33.333 0.00 0.00 40.96 1.63
501 503 8.650490 ACCAAAATGGAGTGTTTTCAGAAATAT 58.350 29.630 2.85 0.00 40.96 1.28
510 512 5.106357 GCAAACAACCAAAATGGAGTGTTTT 60.106 36.000 21.90 12.08 46.57 2.43
523 525 7.721402 ACAAGTATATTGAAGCAAACAACCAA 58.279 30.769 0.00 0.00 0.00 3.67
524 526 7.013750 TGACAAGTATATTGAAGCAAACAACCA 59.986 33.333 0.00 0.00 0.00 3.67
525 527 7.326063 GTGACAAGTATATTGAAGCAAACAACC 59.674 37.037 0.00 0.00 0.00 3.77
526 528 7.860373 TGTGACAAGTATATTGAAGCAAACAAC 59.140 33.333 0.00 0.00 0.00 3.32
527 529 7.935520 TGTGACAAGTATATTGAAGCAAACAA 58.064 30.769 0.00 0.00 0.00 2.83
528 530 7.503521 TGTGACAAGTATATTGAAGCAAACA 57.496 32.000 0.00 0.00 0.00 2.83
542 544 2.736721 GCGAGCAATCTTGTGACAAGTA 59.263 45.455 23.17 11.68 0.00 2.24
547 549 1.151668 ACAGCGAGCAATCTTGTGAC 58.848 50.000 0.00 0.00 0.00 3.67
549 551 1.400629 CCAACAGCGAGCAATCTTGTG 60.401 52.381 0.00 0.00 0.00 3.33
550 552 0.877071 CCAACAGCGAGCAATCTTGT 59.123 50.000 0.00 0.00 0.00 3.16
585 587 3.243704 CCGAGGAAAATCAAAGCCAAACA 60.244 43.478 0.00 0.00 0.00 2.83
591 593 2.723124 TTGCCGAGGAAAATCAAAGC 57.277 45.000 0.00 0.00 0.00 3.51
620 622 9.337396 TGACACTCAAAAGACAAATATACTGTT 57.663 29.630 0.00 0.00 0.00 3.16
625 627 9.778741 AGACTTGACACTCAAAAGACAAATATA 57.221 29.630 0.00 0.00 35.73 0.86
645 650 7.714377 AGAGATGGCAATAATCACTAAGACTTG 59.286 37.037 0.00 0.00 0.00 3.16
650 655 8.127327 CACAAAGAGATGGCAATAATCACTAAG 58.873 37.037 0.00 0.00 0.00 2.18
651 656 7.611467 ACACAAAGAGATGGCAATAATCACTAA 59.389 33.333 0.00 0.00 0.00 2.24
653 658 5.948162 ACACAAAGAGATGGCAATAATCACT 59.052 36.000 0.00 0.00 0.00 3.41
706 711 9.911788 AATGTCTCAGAATATAATTGTTCAGGT 57.088 29.630 0.00 0.00 0.00 4.00
720 725 4.343526 AGCCGAGTGATAATGTCTCAGAAT 59.656 41.667 0.00 0.00 0.00 2.40
722 727 3.291584 AGCCGAGTGATAATGTCTCAGA 58.708 45.455 0.00 0.00 0.00 3.27
723 728 3.724508 AGCCGAGTGATAATGTCTCAG 57.275 47.619 0.00 0.00 0.00 3.35
731 736 3.766151 CGTCAAACTAGCCGAGTGATAA 58.234 45.455 0.00 0.00 38.87 1.75
733 738 1.736032 GCGTCAAACTAGCCGAGTGAT 60.736 52.381 0.00 0.00 38.87 3.06
734 739 0.388134 GCGTCAAACTAGCCGAGTGA 60.388 55.000 0.00 0.00 38.87 3.41
735 740 0.388649 AGCGTCAAACTAGCCGAGTG 60.389 55.000 0.00 0.00 38.87 3.51
736 741 0.388649 CAGCGTCAAACTAGCCGAGT 60.389 55.000 0.00 0.00 41.56 4.18
737 742 1.687494 GCAGCGTCAAACTAGCCGAG 61.687 60.000 0.00 0.00 0.00 4.63
739 744 1.565156 TTGCAGCGTCAAACTAGCCG 61.565 55.000 0.00 0.00 0.00 5.52
741 746 3.951979 ATATTGCAGCGTCAAACTAGC 57.048 42.857 0.00 0.00 0.00 3.42
742 747 6.414079 CAAGTATATTGCAGCGTCAAACTAG 58.586 40.000 0.00 0.00 0.00 2.57
743 748 5.220586 GCAAGTATATTGCAGCGTCAAACTA 60.221 40.000 7.67 0.00 44.34 2.24
744 749 4.437390 GCAAGTATATTGCAGCGTCAAACT 60.437 41.667 7.67 0.00 44.34 2.66
745 750 3.786048 GCAAGTATATTGCAGCGTCAAAC 59.214 43.478 7.67 0.00 44.34 2.93
746 751 4.014847 GCAAGTATATTGCAGCGTCAAA 57.985 40.909 7.67 0.00 44.34 2.69
747 752 3.673746 GCAAGTATATTGCAGCGTCAA 57.326 42.857 7.67 0.00 44.34 3.18
761 766 9.745880 CTCTTATATTTCTTTACGGAGCAAGTA 57.254 33.333 0.00 0.00 0.00 2.24
764 769 7.045416 TGCTCTTATATTTCTTTACGGAGCAA 58.955 34.615 10.66 0.00 46.50 3.91
766 771 7.659652 ATGCTCTTATATTTCTTTACGGAGC 57.340 36.000 0.00 0.00 42.41 4.70
808 813 9.685828 GGAGTATAAAAGTGTCTAGATCATCAC 57.314 37.037 0.00 0.00 0.00 3.06
809 814 8.861086 GGGAGTATAAAAGTGTCTAGATCATCA 58.139 37.037 0.00 0.00 0.00 3.07
810 815 9.084533 AGGGAGTATAAAAGTGTCTAGATCATC 57.915 37.037 0.00 0.00 0.00 2.92
811 816 9.084533 GAGGGAGTATAAAAGTGTCTAGATCAT 57.915 37.037 0.00 0.00 0.00 2.45
812 817 7.506261 GGAGGGAGTATAAAAGTGTCTAGATCA 59.494 40.741 0.00 0.00 0.00 2.92
813 818 7.308710 CGGAGGGAGTATAAAAGTGTCTAGATC 60.309 44.444 0.00 0.00 0.00 2.75
814 819 6.490721 CGGAGGGAGTATAAAAGTGTCTAGAT 59.509 42.308 0.00 0.00 0.00 1.98
815 820 5.826737 CGGAGGGAGTATAAAAGTGTCTAGA 59.173 44.000 0.00 0.00 0.00 2.43
816 821 5.593502 ACGGAGGGAGTATAAAAGTGTCTAG 59.406 44.000 0.00 0.00 0.00 2.43
817 822 5.513233 ACGGAGGGAGTATAAAAGTGTCTA 58.487 41.667 0.00 0.00 0.00 2.59
818 823 4.351127 ACGGAGGGAGTATAAAAGTGTCT 58.649 43.478 0.00 0.00 0.00 3.41
819 824 4.732672 ACGGAGGGAGTATAAAAGTGTC 57.267 45.455 0.00 0.00 0.00 3.67
820 825 6.212187 AGTTTACGGAGGGAGTATAAAAGTGT 59.788 38.462 0.00 0.00 0.00 3.55
821 826 6.637657 AGTTTACGGAGGGAGTATAAAAGTG 58.362 40.000 0.00 0.00 0.00 3.16
822 827 6.864151 AGTTTACGGAGGGAGTATAAAAGT 57.136 37.500 0.00 0.00 0.00 2.66
829 834 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
830 835 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
831 836 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
832 837 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
833 838 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
834 839 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
835 840 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
836 841 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
837 842 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
851 856 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
852 857 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
853 858 9.224058 CTCACTACTTTAGTATTCTAAACGCTC 57.776 37.037 0.76 0.00 40.05 5.03
854 859 7.701501 GCTCACTACTTTAGTATTCTAAACGCT 59.298 37.037 0.76 0.00 40.05 5.07
855 860 7.701501 AGCTCACTACTTTAGTATTCTAAACGC 59.298 37.037 0.76 0.00 40.05 4.84
860 865 9.258826 CGTCTAGCTCACTACTTTAGTATTCTA 57.741 37.037 0.00 0.00 37.23 2.10
861 866 7.254863 GCGTCTAGCTCACTACTTTAGTATTCT 60.255 40.741 0.00 0.00 44.04 2.40
862 867 6.852345 GCGTCTAGCTCACTACTTTAGTATTC 59.148 42.308 0.00 0.00 44.04 1.75
883 888 7.808856 CCCTCTGTAAACTAATATAAGAGCGTC 59.191 40.741 0.00 0.00 0.00 5.19
886 891 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
896 901 9.987272 GTTAAAAAGTACTCCCTCTGTAAACTA 57.013 33.333 0.00 0.00 0.00 2.24
897 902 7.935755 GGTTAAAAAGTACTCCCTCTGTAAACT 59.064 37.037 0.00 0.00 0.00 2.66
899 904 7.935210 CAGGTTAAAAAGTACTCCCTCTGTAAA 59.065 37.037 0.00 0.00 0.00 2.01
900 905 7.447594 CAGGTTAAAAAGTACTCCCTCTGTAA 58.552 38.462 0.00 0.00 0.00 2.41
901 906 6.013984 CCAGGTTAAAAAGTACTCCCTCTGTA 60.014 42.308 0.00 0.00 0.00 2.74
904 930 4.912133 ACCAGGTTAAAAAGTACTCCCTCT 59.088 41.667 0.00 0.00 0.00 3.69
938 964 8.261492 TGCAGAGAGAAAATGAATACTCTTTC 57.739 34.615 0.00 0.00 39.39 2.62
944 970 6.749923 AACCTGCAGAGAGAAAATGAATAC 57.250 37.500 17.39 0.00 0.00 1.89
946 972 6.008960 AGAAACCTGCAGAGAGAAAATGAAT 58.991 36.000 17.39 0.00 0.00 2.57
1008 1034 0.472925 TGGGTTCACCACCTGCTCTA 60.473 55.000 0.00 0.00 46.80 2.43
1020 1046 2.811431 CACTTGCTCGTTTATGGGTTCA 59.189 45.455 0.00 0.00 0.00 3.18
1142 1178 2.844362 CCAGGGGCTCTATGGCGA 60.844 66.667 0.00 0.00 42.84 5.54
1167 1203 1.480789 TCATTCTGTAGCACCGCCTA 58.519 50.000 0.00 0.00 0.00 3.93
1188 1224 0.679505 TCTCAACCAAGACTCCACCG 59.320 55.000 0.00 0.00 0.00 4.94
1257 1293 2.266055 CGAGCCACCACCTCTTCC 59.734 66.667 0.00 0.00 0.00 3.46
1276 1312 0.534873 GTCTCCAGAGCCTCCTTCAC 59.465 60.000 0.00 0.00 0.00 3.18
1296 1332 5.931441 ACTCGGTCATCTCTTTCTTTTTG 57.069 39.130 0.00 0.00 0.00 2.44
1379 1418 3.566130 GCAGAGGCTTCCTTCATGT 57.434 52.632 0.00 0.00 31.76 3.21
1422 1461 0.891373 GTCACTCTGCTCTACTGCCA 59.109 55.000 0.00 0.00 0.00 4.92
1424 1464 0.179150 CCGTCACTCTGCTCTACTGC 60.179 60.000 0.00 0.00 0.00 4.40
1437 1477 0.106149 AGTGTTCCTTGTCCCGTCAC 59.894 55.000 0.00 0.00 0.00 3.67
1486 1528 0.981943 ACCCTTTAGTCCCGGTTCTG 59.018 55.000 0.00 0.00 0.00 3.02
1511 1553 4.020839 CGGGACTAAAGGGTGAGACTTTAA 60.021 45.833 0.00 0.00 39.23 1.52
1517 1559 0.115745 ACCGGGACTAAAGGGTGAGA 59.884 55.000 6.32 0.00 0.00 3.27
1521 1564 1.738474 AAGAACCGGGACTAAAGGGT 58.262 50.000 6.32 0.00 0.00 4.34
1715 1793 9.959721 AAAGATTAGAGGTTAAATTGAGCAGTA 57.040 29.630 0.00 0.00 0.00 2.74
1752 1856 3.541632 GCCGGGAAGTTAGATGATTTGA 58.458 45.455 2.18 0.00 0.00 2.69
1778 1882 2.024369 TGCAGTAGTGAGAGGATGGGTA 60.024 50.000 0.42 0.00 0.00 3.69
1797 1901 0.097150 GTTAAGCGTGCTTAGGCTGC 59.903 55.000 13.47 6.54 39.93 5.25
1804 1908 0.872388 CCCGAAAGTTAAGCGTGCTT 59.128 50.000 12.30 12.30 39.83 3.91
1830 1934 0.767060 AGACTTGGAAACGAGGGGGT 60.767 55.000 0.00 0.00 46.96 4.95
2171 2332 4.141505 TGGTCAAATCTGGTCAAACTCTGA 60.142 41.667 0.00 0.00 0.00 3.27
2174 2335 5.514274 TTTGGTCAAATCTGGTCAAACTC 57.486 39.130 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.