Multiple sequence alignment - TraesCS7D01G040600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G040600 chr7D 100.000 3368 0 0 1 3368 20430283 20433650 0.000000e+00 6220.0
1 TraesCS7D01G040600 chr7D 97.368 38 0 1 335 372 104883724 104883688 2.810000e-06 63.9
2 TraesCS7D01G040600 chr6B 89.740 2037 155 24 1339 3368 14021535 14019546 0.000000e+00 2555.0
3 TraesCS7D01G040600 chr6B 89.543 2037 155 26 1339 3368 709010489 709008504 0.000000e+00 2529.0
4 TraesCS7D01G040600 chr6B 81.908 1310 183 31 1403 2700 711365187 711366454 0.000000e+00 1057.0
5 TraesCS7D01G040600 chr6B 87.179 312 33 6 654 963 709011032 709010726 6.920000e-92 348.0
6 TraesCS7D01G040600 chr6B 91.626 203 15 1 1060 1262 709010713 709010513 2.560000e-71 279.0
7 TraesCS7D01G040600 chr6B 82.578 287 33 11 373 658 84102353 84102623 1.560000e-58 237.0
8 TraesCS7D01G040600 chr6B 82.449 245 39 4 1007 1249 84102925 84103167 9.470000e-51 211.0
9 TraesCS7D01G040600 chr2A 86.348 2073 225 49 1331 3368 126652588 126654637 0.000000e+00 2207.0
10 TraesCS7D01G040600 chr2A 88.766 1353 130 20 1460 2805 779329383 779328046 0.000000e+00 1637.0
11 TraesCS7D01G040600 chr2A 85.965 285 38 2 374 658 779331673 779331391 1.520000e-78 303.0
12 TraesCS7D01G040600 chr2A 83.895 267 39 3 1007 1272 779329754 779329491 5.580000e-63 252.0
13 TraesCS7D01G040600 chr2A 86.740 181 24 0 823 1003 126652108 126652288 5.700000e-48 202.0
14 TraesCS7D01G040600 chr2A 100.000 32 0 0 341 372 396229026 396229057 3.630000e-05 60.2
15 TraesCS7D01G040600 chr2A 100.000 32 0 0 341 372 404881924 404881893 3.630000e-05 60.2
16 TraesCS7D01G040600 chr7B 86.307 2074 224 53 1331 3368 265362087 265364136 0.000000e+00 2202.0
17 TraesCS7D01G040600 chr7B 91.878 985 52 12 654 1634 201268082 201267122 0.000000e+00 1351.0
18 TraesCS7D01G040600 chr7B 86.740 181 24 0 823 1003 265361607 265361787 5.700000e-48 202.0
19 TraesCS7D01G040600 chr7B 82.778 180 31 0 1007 1186 265361821 265362000 9.670000e-36 161.0
20 TraesCS7D01G040600 chr7B 92.958 71 5 0 654 724 265361460 265361530 1.650000e-18 104.0
21 TraesCS7D01G040600 chr7B 92.063 63 5 0 551 613 201268272 201268210 4.630000e-14 89.8
22 TraesCS7D01G040600 chr7B 97.222 36 0 1 623 658 201268217 201268183 3.630000e-05 60.2
23 TraesCS7D01G040600 chr1D 85.076 1903 241 33 1483 3368 9255940 9254064 0.000000e+00 1901.0
24 TraesCS7D01G040600 chr3B 89.216 1493 138 21 1888 3368 750878462 750876981 0.000000e+00 1844.0
25 TraesCS7D01G040600 chr3B 88.041 970 99 12 2405 3368 17677694 17676736 0.000000e+00 1133.0
26 TraesCS7D01G040600 chr3B 87.273 165 21 0 1022 1186 750894880 750894716 4.440000e-44 189.0
27 TraesCS7D01G040600 chr3B 79.167 192 33 7 815 1003 9361033 9360846 3.530000e-25 126.0
28 TraesCS7D01G040600 chr3B 91.781 73 6 0 654 726 750895256 750895184 5.950000e-18 102.0
29 TraesCS7D01G040600 chr3B 97.436 39 0 1 335 372 805629659 805629697 7.800000e-07 65.8
30 TraesCS7D01G040600 chr6A 87.154 1588 171 26 1338 2909 615377882 615376312 0.000000e+00 1772.0
31 TraesCS7D01G040600 chr6A 81.408 355 57 7 654 1003 615378543 615378193 7.110000e-72 281.0
32 TraesCS7D01G040600 chr6A 86.730 211 26 2 1015 1225 615378151 615377943 2.020000e-57 233.0
33 TraesCS7D01G040600 chr6A 88.021 192 23 0 373 564 615378844 615378653 9.400000e-56 228.0
34 TraesCS7D01G040600 chr6A 94.872 39 1 1 334 372 600864753 600864716 3.630000e-05 60.2
35 TraesCS7D01G040600 chr4B 89.875 1363 123 11 1597 2954 1795924 1797276 0.000000e+00 1738.0
36 TraesCS7D01G040600 chr4B 88.014 1118 122 6 1977 3093 63806657 63805551 0.000000e+00 1312.0
37 TraesCS7D01G040600 chr5D 82.946 1249 159 36 1403 2635 38276463 38277673 0.000000e+00 1077.0
38 TraesCS7D01G040600 chr5D 80.137 292 44 11 371 658 38275451 38275732 4.400000e-49 206.0
39 TraesCS7D01G040600 chr5D 100.000 32 0 0 341 372 387702892 387702923 3.630000e-05 60.2
40 TraesCS7D01G040600 chr1A 83.611 1141 147 22 1568 2700 551192764 551191656 0.000000e+00 1035.0
41 TraesCS7D01G040600 chr7A 93.548 186 12 0 157 342 20950212 20950397 9.200000e-71 278.0
42 TraesCS7D01G040600 chr7A 89.418 189 16 3 157 342 20549109 20549296 5.620000e-58 235.0
43 TraesCS7D01G040600 chr7A 85.185 189 15 3 154 342 20475811 20475986 7.420000e-42 182.0
44 TraesCS7D01G040600 chr7A 89.706 136 13 1 1 136 20950091 20950225 4.470000e-39 172.0
45 TraesCS7D01G040600 chr7A 92.000 100 7 1 241 340 20693667 20693765 4.530000e-29 139.0
46 TraesCS7D01G040600 chr7A 87.500 112 14 0 1 112 20475684 20475795 2.730000e-26 130.0
47 TraesCS7D01G040600 chr7A 100.000 33 0 0 340 372 185212885 185212853 1.010000e-05 62.1
48 TraesCS7D01G040600 chr3A 86.383 235 32 0 373 607 735231528 735231294 1.200000e-64 257.0
49 TraesCS7D01G040600 chr3A 79.834 362 54 14 654 1003 508522680 508523034 2.600000e-61 246.0
50 TraesCS7D01G040600 chr3A 83.521 267 40 3 1007 1272 735228932 735228669 2.600000e-61 246.0
51 TraesCS7D01G040600 chr3A 95.652 138 6 0 3065 3202 735227229 735227092 4.370000e-54 222.0
52 TraesCS7D01G040600 chr3A 86.111 180 25 0 1007 1186 508523068 508523247 9.540000e-46 195.0
53 TraesCS7D01G040600 chr5A 75.000 464 112 3 2741 3203 331864558 331865018 9.470000e-51 211.0
54 TraesCS7D01G040600 chr3D 75.766 359 60 18 654 1003 309696086 309696426 4.500000e-34 156.0
55 TraesCS7D01G040600 chr2B 78.541 233 43 4 373 599 750115730 750115499 2.710000e-31 147.0
56 TraesCS7D01G040600 chr2B 100.000 32 0 0 341 372 588539864 588539895 3.630000e-05 60.2
57 TraesCS7D01G040600 chr6D 74.438 356 65 21 654 1003 94933795 94934130 2.730000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G040600 chr7D 20430283 20433650 3367 False 6220.000000 6220 100.000000 1 3368 1 chr7D.!!$F1 3367
1 TraesCS7D01G040600 chr6B 14019546 14021535 1989 True 2555.000000 2555 89.740000 1339 3368 1 chr6B.!!$R1 2029
2 TraesCS7D01G040600 chr6B 711365187 711366454 1267 False 1057.000000 1057 81.908000 1403 2700 1 chr6B.!!$F1 1297
3 TraesCS7D01G040600 chr6B 709008504 709011032 2528 True 1052.000000 2529 89.449333 654 3368 3 chr6B.!!$R2 2714
4 TraesCS7D01G040600 chr6B 84102353 84103167 814 False 224.000000 237 82.513500 373 1249 2 chr6B.!!$F2 876
5 TraesCS7D01G040600 chr2A 126652108 126654637 2529 False 1204.500000 2207 86.544000 823 3368 2 chr2A.!!$F2 2545
6 TraesCS7D01G040600 chr2A 779328046 779331673 3627 True 730.666667 1637 86.208667 374 2805 3 chr2A.!!$R2 2431
7 TraesCS7D01G040600 chr7B 265361460 265364136 2676 False 667.250000 2202 87.195750 654 3368 4 chr7B.!!$F1 2714
8 TraesCS7D01G040600 chr7B 201267122 201268272 1150 True 500.333333 1351 93.721000 551 1634 3 chr7B.!!$R1 1083
9 TraesCS7D01G040600 chr1D 9254064 9255940 1876 True 1901.000000 1901 85.076000 1483 3368 1 chr1D.!!$R1 1885
10 TraesCS7D01G040600 chr3B 750876981 750878462 1481 True 1844.000000 1844 89.216000 1888 3368 1 chr3B.!!$R3 1480
11 TraesCS7D01G040600 chr3B 17676736 17677694 958 True 1133.000000 1133 88.041000 2405 3368 1 chr3B.!!$R2 963
12 TraesCS7D01G040600 chr6A 615376312 615378844 2532 True 628.500000 1772 85.828250 373 2909 4 chr6A.!!$R2 2536
13 TraesCS7D01G040600 chr4B 1795924 1797276 1352 False 1738.000000 1738 89.875000 1597 2954 1 chr4B.!!$F1 1357
14 TraesCS7D01G040600 chr4B 63805551 63806657 1106 True 1312.000000 1312 88.014000 1977 3093 1 chr4B.!!$R1 1116
15 TraesCS7D01G040600 chr5D 38275451 38277673 2222 False 641.500000 1077 81.541500 371 2635 2 chr5D.!!$F2 2264
16 TraesCS7D01G040600 chr1A 551191656 551192764 1108 True 1035.000000 1035 83.611000 1568 2700 1 chr1A.!!$R1 1132
17 TraesCS7D01G040600 chr3A 735227092 735231528 4436 True 241.666667 257 88.518667 373 3202 3 chr3A.!!$R1 2829
18 TraesCS7D01G040600 chr3A 508522680 508523247 567 False 220.500000 246 82.972500 654 1186 2 chr3A.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.031721 CGTATCGGGGGTCAGTTAGC 59.968 60.0 0.0 0.0 0.00 3.09 F
741 2772 0.175531 TCGCATCTGCCATTTCTCGA 59.824 50.0 0.0 0.0 37.91 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1003 4211 0.039256 CCAACATTTGCCTCCACACG 60.039 55.0 0.00 0.0 0.0 4.49 R
2474 5790 0.182775 ACCAACGAAGAGGCCAAACT 59.817 50.0 5.01 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.872628 TTAGAGATGCATTCATGTCATTCC 57.127 37.500 0.00 0.00 43.29 3.01
28 29 3.813724 AGAGATGCATTCATGTCATTCCG 59.186 43.478 0.00 0.00 43.29 4.30
29 30 2.882761 AGATGCATTCATGTCATTCCGG 59.117 45.455 0.00 0.00 31.96 5.14
30 31 2.416680 TGCATTCATGTCATTCCGGA 57.583 45.000 0.00 0.00 0.00 5.14
31 32 2.720915 TGCATTCATGTCATTCCGGAA 58.279 42.857 21.37 21.37 0.00 4.30
32 33 3.087781 TGCATTCATGTCATTCCGGAAA 58.912 40.909 23.08 4.58 0.00 3.13
33 34 3.700539 TGCATTCATGTCATTCCGGAAAT 59.299 39.130 23.08 7.18 0.00 2.17
34 35 4.160065 TGCATTCATGTCATTCCGGAAATT 59.840 37.500 23.08 1.87 0.00 1.82
35 36 5.359292 TGCATTCATGTCATTCCGGAAATTA 59.641 36.000 23.08 8.59 0.00 1.40
36 37 6.127507 TGCATTCATGTCATTCCGGAAATTAA 60.128 34.615 23.08 8.26 0.00 1.40
37 38 6.418819 GCATTCATGTCATTCCGGAAATTAAG 59.581 38.462 23.08 10.05 0.00 1.85
38 39 7.483307 CATTCATGTCATTCCGGAAATTAAGT 58.517 34.615 23.08 0.00 0.00 2.24
39 40 6.435430 TCATGTCATTCCGGAAATTAAGTG 57.565 37.500 23.08 13.91 0.00 3.16
40 41 4.695217 TGTCATTCCGGAAATTAAGTGC 57.305 40.909 23.08 10.21 0.00 4.40
41 42 3.126171 TGTCATTCCGGAAATTAAGTGCG 59.874 43.478 23.08 1.65 0.00 5.34
42 43 3.126343 GTCATTCCGGAAATTAAGTGCGT 59.874 43.478 23.08 0.00 0.00 5.24
43 44 4.330620 GTCATTCCGGAAATTAAGTGCGTA 59.669 41.667 23.08 0.00 0.00 4.42
44 45 4.936411 TCATTCCGGAAATTAAGTGCGTAA 59.064 37.500 23.08 0.00 0.00 3.18
45 46 5.411977 TCATTCCGGAAATTAAGTGCGTAAA 59.588 36.000 23.08 0.00 0.00 2.01
46 47 5.686159 TTCCGGAAATTAAGTGCGTAAAA 57.314 34.783 16.28 0.00 0.00 1.52
47 48 5.686159 TCCGGAAATTAAGTGCGTAAAAA 57.314 34.783 0.00 0.00 0.00 1.94
48 49 5.691815 TCCGGAAATTAAGTGCGTAAAAAG 58.308 37.500 0.00 0.00 0.00 2.27
49 50 5.469421 TCCGGAAATTAAGTGCGTAAAAAGA 59.531 36.000 0.00 0.00 0.00 2.52
50 51 6.149807 TCCGGAAATTAAGTGCGTAAAAAGAT 59.850 34.615 0.00 0.00 0.00 2.40
51 52 6.804783 CCGGAAATTAAGTGCGTAAAAAGATT 59.195 34.615 0.00 0.00 0.00 2.40
52 53 7.327518 CCGGAAATTAAGTGCGTAAAAAGATTT 59.672 33.333 0.00 0.00 0.00 2.17
53 54 9.332301 CGGAAATTAAGTGCGTAAAAAGATTTA 57.668 29.630 0.00 0.00 0.00 1.40
58 59 8.800231 TTAAGTGCGTAAAAAGATTTAAACCC 57.200 30.769 0.00 0.00 32.98 4.11
59 60 6.644248 AGTGCGTAAAAAGATTTAAACCCT 57.356 33.333 0.00 0.00 32.98 4.34
60 61 7.046292 AGTGCGTAAAAAGATTTAAACCCTT 57.954 32.000 0.00 0.00 32.98 3.95
61 62 7.143340 AGTGCGTAAAAAGATTTAAACCCTTC 58.857 34.615 5.47 0.00 32.98 3.46
62 63 6.364165 GTGCGTAAAAAGATTTAAACCCTTCC 59.636 38.462 5.47 0.00 32.98 3.46
63 64 5.865552 GCGTAAAAAGATTTAAACCCTTCCC 59.134 40.000 5.47 0.00 32.98 3.97
64 65 6.517027 GCGTAAAAAGATTTAAACCCTTCCCA 60.517 38.462 5.47 0.00 32.98 4.37
65 66 7.435305 CGTAAAAAGATTTAAACCCTTCCCAA 58.565 34.615 5.47 0.00 32.98 4.12
66 67 8.092068 CGTAAAAAGATTTAAACCCTTCCCAAT 58.908 33.333 5.47 0.00 32.98 3.16
67 68 9.787435 GTAAAAAGATTTAAACCCTTCCCAATT 57.213 29.630 5.47 0.00 32.98 2.32
71 72 9.958180 AAAGATTTAAACCCTTCCCAATTATTG 57.042 29.630 0.00 0.00 0.00 1.90
72 73 7.564793 AGATTTAAACCCTTCCCAATTATTGC 58.435 34.615 0.00 0.00 0.00 3.56
73 74 6.943899 TTTAAACCCTTCCCAATTATTGCT 57.056 33.333 0.00 0.00 0.00 3.91
74 75 6.538945 TTAAACCCTTCCCAATTATTGCTC 57.461 37.500 0.00 0.00 0.00 4.26
75 76 4.337264 AACCCTTCCCAATTATTGCTCT 57.663 40.909 0.00 0.00 0.00 4.09
76 77 3.903467 ACCCTTCCCAATTATTGCTCTC 58.097 45.455 0.00 0.00 0.00 3.20
77 78 2.880890 CCCTTCCCAATTATTGCTCTCG 59.119 50.000 0.00 0.00 0.00 4.04
78 79 3.433598 CCCTTCCCAATTATTGCTCTCGA 60.434 47.826 0.00 0.00 0.00 4.04
79 80 3.812053 CCTTCCCAATTATTGCTCTCGAG 59.188 47.826 5.93 5.93 0.00 4.04
80 81 4.446371 CTTCCCAATTATTGCTCTCGAGT 58.554 43.478 13.13 0.00 0.00 4.18
81 82 4.487714 TCCCAATTATTGCTCTCGAGTT 57.512 40.909 13.13 0.00 0.00 3.01
82 83 4.191544 TCCCAATTATTGCTCTCGAGTTG 58.808 43.478 13.13 6.74 0.00 3.16
83 84 3.242870 CCCAATTATTGCTCTCGAGTTGC 60.243 47.826 20.37 20.37 0.00 4.17
84 85 3.624861 CCAATTATTGCTCTCGAGTTGCT 59.375 43.478 24.72 13.84 0.00 3.91
85 86 4.811024 CCAATTATTGCTCTCGAGTTGCTA 59.189 41.667 24.72 20.28 0.00 3.49
86 87 5.050499 CCAATTATTGCTCTCGAGTTGCTAG 60.050 44.000 24.72 12.55 0.00 3.42
87 88 1.933247 ATTGCTCTCGAGTTGCTAGC 58.067 50.000 24.72 20.16 0.00 3.42
88 89 0.603065 TTGCTCTCGAGTTGCTAGCA 59.397 50.000 24.72 22.03 41.19 3.49
89 90 0.603065 TGCTCTCGAGTTGCTAGCAA 59.397 50.000 26.06 26.06 40.05 3.91
90 91 1.205655 TGCTCTCGAGTTGCTAGCAAT 59.794 47.619 31.46 20.18 40.05 3.56
91 92 1.857837 GCTCTCGAGTTGCTAGCAATC 59.142 52.381 31.46 25.00 38.28 2.67
92 93 2.115595 CTCTCGAGTTGCTAGCAATCG 58.884 52.381 33.02 33.02 38.28 3.34
93 94 1.472878 TCTCGAGTTGCTAGCAATCGT 59.527 47.619 34.69 24.86 38.28 3.73
94 95 2.681344 TCTCGAGTTGCTAGCAATCGTA 59.319 45.455 34.69 27.69 38.28 3.43
95 96 3.315470 TCTCGAGTTGCTAGCAATCGTAT 59.685 43.478 34.69 22.08 38.28 3.06
96 97 3.629058 TCGAGTTGCTAGCAATCGTATC 58.371 45.455 34.69 25.52 38.28 2.24
97 98 2.402049 CGAGTTGCTAGCAATCGTATCG 59.598 50.000 31.79 28.04 38.28 2.92
98 99 2.726760 GAGTTGCTAGCAATCGTATCGG 59.273 50.000 31.46 0.00 38.28 4.18
99 100 1.792949 GTTGCTAGCAATCGTATCGGG 59.207 52.381 31.46 0.00 38.28 5.14
100 101 0.317160 TGCTAGCAATCGTATCGGGG 59.683 55.000 16.84 0.00 0.00 5.73
101 102 0.389948 GCTAGCAATCGTATCGGGGG 60.390 60.000 10.63 0.00 0.00 5.40
102 103 0.966920 CTAGCAATCGTATCGGGGGT 59.033 55.000 0.00 0.00 0.00 4.95
103 104 0.963962 TAGCAATCGTATCGGGGGTC 59.036 55.000 0.00 0.00 0.00 4.46
104 105 1.046472 AGCAATCGTATCGGGGGTCA 61.046 55.000 0.00 0.00 0.00 4.02
105 106 0.600255 GCAATCGTATCGGGGGTCAG 60.600 60.000 0.00 0.00 0.00 3.51
106 107 0.750850 CAATCGTATCGGGGGTCAGT 59.249 55.000 0.00 0.00 0.00 3.41
107 108 1.138266 CAATCGTATCGGGGGTCAGTT 59.862 52.381 0.00 0.00 0.00 3.16
108 109 2.363038 CAATCGTATCGGGGGTCAGTTA 59.637 50.000 0.00 0.00 0.00 2.24
109 110 1.683943 TCGTATCGGGGGTCAGTTAG 58.316 55.000 0.00 0.00 0.00 2.34
110 111 0.031721 CGTATCGGGGGTCAGTTAGC 59.968 60.000 0.00 0.00 0.00 3.09
111 112 1.411041 GTATCGGGGGTCAGTTAGCT 58.589 55.000 0.00 0.00 0.00 3.32
112 113 1.761198 GTATCGGGGGTCAGTTAGCTT 59.239 52.381 0.00 0.00 0.00 3.74
113 114 1.286248 ATCGGGGGTCAGTTAGCTTT 58.714 50.000 0.00 0.00 0.00 3.51
114 115 0.611714 TCGGGGGTCAGTTAGCTTTC 59.388 55.000 0.00 0.00 0.00 2.62
115 116 0.323629 CGGGGGTCAGTTAGCTTTCA 59.676 55.000 0.00 0.00 0.00 2.69
116 117 1.271163 CGGGGGTCAGTTAGCTTTCAA 60.271 52.381 0.00 0.00 0.00 2.69
117 118 2.437413 GGGGGTCAGTTAGCTTTCAAG 58.563 52.381 0.00 0.00 0.00 3.02
118 119 2.224793 GGGGGTCAGTTAGCTTTCAAGT 60.225 50.000 0.00 0.00 0.00 3.16
119 120 3.075148 GGGGTCAGTTAGCTTTCAAGTC 58.925 50.000 0.00 0.00 0.00 3.01
120 121 3.496160 GGGGTCAGTTAGCTTTCAAGTCA 60.496 47.826 0.00 0.00 0.00 3.41
121 122 4.134563 GGGTCAGTTAGCTTTCAAGTCAA 58.865 43.478 0.00 0.00 0.00 3.18
122 123 4.214332 GGGTCAGTTAGCTTTCAAGTCAAG 59.786 45.833 0.00 0.00 0.00 3.02
123 124 5.057149 GGTCAGTTAGCTTTCAAGTCAAGA 58.943 41.667 0.00 0.00 0.00 3.02
124 125 5.703130 GGTCAGTTAGCTTTCAAGTCAAGAT 59.297 40.000 0.00 0.00 0.00 2.40
125 126 6.205658 GGTCAGTTAGCTTTCAAGTCAAGATT 59.794 38.462 0.00 0.00 0.00 2.40
126 127 7.294473 GTCAGTTAGCTTTCAAGTCAAGATTC 58.706 38.462 0.00 0.00 0.00 2.52
127 128 7.172361 GTCAGTTAGCTTTCAAGTCAAGATTCT 59.828 37.037 0.00 0.00 0.00 2.40
128 129 7.172190 TCAGTTAGCTTTCAAGTCAAGATTCTG 59.828 37.037 0.00 0.00 0.00 3.02
129 130 7.172190 CAGTTAGCTTTCAAGTCAAGATTCTGA 59.828 37.037 0.00 0.00 29.68 3.27
130 131 7.716998 AGTTAGCTTTCAAGTCAAGATTCTGAA 59.283 33.333 0.00 0.00 0.00 3.02
131 132 6.557291 AGCTTTCAAGTCAAGATTCTGAAG 57.443 37.500 0.00 0.00 0.00 3.02
132 133 5.048852 AGCTTTCAAGTCAAGATTCTGAAGC 60.049 40.000 0.00 0.00 0.00 3.86
133 134 5.278169 GCTTTCAAGTCAAGATTCTGAAGCA 60.278 40.000 8.50 0.00 0.00 3.91
134 135 6.698008 TTTCAAGTCAAGATTCTGAAGCAA 57.302 33.333 8.50 0.00 0.00 3.91
135 136 5.936686 TCAAGTCAAGATTCTGAAGCAAG 57.063 39.130 8.50 0.00 0.00 4.01
136 137 5.614308 TCAAGTCAAGATTCTGAAGCAAGA 58.386 37.500 8.50 2.43 0.00 3.02
137 138 5.468072 TCAAGTCAAGATTCTGAAGCAAGAC 59.532 40.000 17.17 17.17 0.00 3.01
138 139 5.226194 AGTCAAGATTCTGAAGCAAGACT 57.774 39.130 20.02 20.02 31.44 3.24
139 140 5.619220 AGTCAAGATTCTGAAGCAAGACTT 58.381 37.500 20.02 9.95 42.98 3.01
153 154 4.654091 CAAGACTTCCTTGCCAAGAAAA 57.346 40.909 5.89 0.00 44.90 2.29
154 155 5.009854 CAAGACTTCCTTGCCAAGAAAAA 57.990 39.130 5.89 0.00 44.90 1.94
155 156 5.604565 CAAGACTTCCTTGCCAAGAAAAAT 58.395 37.500 5.89 0.00 44.90 1.82
156 157 5.205759 AGACTTCCTTGCCAAGAAAAATG 57.794 39.130 5.89 0.00 0.00 2.32
157 158 4.895297 AGACTTCCTTGCCAAGAAAAATGA 59.105 37.500 5.89 0.00 0.00 2.57
158 159 5.541484 AGACTTCCTTGCCAAGAAAAATGAT 59.459 36.000 5.89 0.00 0.00 2.45
159 160 6.042437 AGACTTCCTTGCCAAGAAAAATGATT 59.958 34.615 5.89 0.00 0.00 2.57
160 161 6.226052 ACTTCCTTGCCAAGAAAAATGATTC 58.774 36.000 5.89 0.00 0.00 2.52
161 162 6.042437 ACTTCCTTGCCAAGAAAAATGATTCT 59.958 34.615 5.89 0.00 41.34 2.40
162 163 5.786311 TCCTTGCCAAGAAAAATGATTCTG 58.214 37.500 5.89 0.00 39.54 3.02
163 164 5.539574 TCCTTGCCAAGAAAAATGATTCTGA 59.460 36.000 5.89 0.00 39.54 3.27
164 165 6.041865 TCCTTGCCAAGAAAAATGATTCTGAA 59.958 34.615 5.89 0.00 39.54 3.02
165 166 6.367969 CCTTGCCAAGAAAAATGATTCTGAAG 59.632 38.462 5.89 0.00 39.54 3.02
166 167 5.232463 TGCCAAGAAAAATGATTCTGAAGC 58.768 37.500 0.00 0.00 39.54 3.86
167 168 5.221481 TGCCAAGAAAAATGATTCTGAAGCA 60.221 36.000 11.08 11.08 39.54 3.91
168 169 5.697633 GCCAAGAAAAATGATTCTGAAGCAA 59.302 36.000 12.75 0.00 39.54 3.91
169 170 6.128634 GCCAAGAAAAATGATTCTGAAGCAAG 60.129 38.462 12.75 0.00 39.54 4.01
170 171 6.128634 CCAAGAAAAATGATTCTGAAGCAAGC 60.129 38.462 12.75 1.21 39.54 4.01
171 172 5.476614 AGAAAAATGATTCTGAAGCAAGCC 58.523 37.500 12.75 1.39 38.22 4.35
172 173 4.877378 AAAATGATTCTGAAGCAAGCCA 57.123 36.364 12.75 0.00 0.00 4.75
173 174 4.451629 AAATGATTCTGAAGCAAGCCAG 57.548 40.909 12.75 0.00 0.00 4.85
174 175 1.171308 TGATTCTGAAGCAAGCCAGC 58.829 50.000 5.78 0.00 0.00 4.85
175 176 1.171308 GATTCTGAAGCAAGCCAGCA 58.829 50.000 0.00 0.00 36.85 4.41
176 177 1.749634 GATTCTGAAGCAAGCCAGCAT 59.250 47.619 0.00 0.00 36.85 3.79
177 178 1.624336 TTCTGAAGCAAGCCAGCATT 58.376 45.000 0.55 0.00 36.85 3.56
178 179 0.885879 TCTGAAGCAAGCCAGCATTG 59.114 50.000 0.55 0.00 36.85 2.82
179 180 0.601558 CTGAAGCAAGCCAGCATTGT 59.398 50.000 0.55 0.00 36.85 2.71
180 181 0.315886 TGAAGCAAGCCAGCATTGTG 59.684 50.000 0.55 0.00 36.85 3.33
181 182 0.316204 GAAGCAAGCCAGCATTGTGT 59.684 50.000 0.55 0.00 36.85 3.72
182 183 0.754472 AAGCAAGCCAGCATTGTGTT 59.246 45.000 0.55 0.00 36.85 3.32
183 184 0.754472 AGCAAGCCAGCATTGTGTTT 59.246 45.000 0.55 0.00 36.85 2.83
184 185 1.962807 AGCAAGCCAGCATTGTGTTTA 59.037 42.857 0.55 0.00 36.85 2.01
185 186 2.564062 AGCAAGCCAGCATTGTGTTTAT 59.436 40.909 0.55 0.00 36.85 1.40
186 187 3.763360 AGCAAGCCAGCATTGTGTTTATA 59.237 39.130 0.55 0.00 36.85 0.98
187 188 4.403432 AGCAAGCCAGCATTGTGTTTATAT 59.597 37.500 0.55 0.00 36.85 0.86
188 189 5.105228 AGCAAGCCAGCATTGTGTTTATATT 60.105 36.000 0.55 0.00 36.85 1.28
189 190 6.096705 AGCAAGCCAGCATTGTGTTTATATTA 59.903 34.615 0.55 0.00 36.85 0.98
190 191 6.925165 GCAAGCCAGCATTGTGTTTATATTAT 59.075 34.615 0.00 0.00 0.00 1.28
191 192 7.095940 GCAAGCCAGCATTGTGTTTATATTATG 60.096 37.037 0.00 0.00 0.00 1.90
192 193 6.985117 AGCCAGCATTGTGTTTATATTATGG 58.015 36.000 0.00 0.00 0.00 2.74
193 194 5.634859 GCCAGCATTGTGTTTATATTATGGC 59.365 40.000 0.00 0.00 41.22 4.40
194 195 6.738176 GCCAGCATTGTGTTTATATTATGGCA 60.738 38.462 0.00 0.00 45.85 4.92
195 196 7.208777 CCAGCATTGTGTTTATATTATGGCAA 58.791 34.615 0.00 0.00 0.00 4.52
196 197 7.710044 CCAGCATTGTGTTTATATTATGGCAAA 59.290 33.333 0.00 0.00 0.00 3.68
197 198 9.263538 CAGCATTGTGTTTATATTATGGCAAAT 57.736 29.630 0.00 0.00 0.00 2.32
198 199 9.480053 AGCATTGTGTTTATATTATGGCAAATC 57.520 29.630 0.00 0.00 0.00 2.17
199 200 8.427012 GCATTGTGTTTATATTATGGCAAATCG 58.573 33.333 0.00 0.00 0.00 3.34
200 201 9.676195 CATTGTGTTTATATTATGGCAAATCGA 57.324 29.630 0.00 0.00 0.00 3.59
201 202 9.677567 ATTGTGTTTATATTATGGCAAATCGAC 57.322 29.630 0.00 0.00 0.00 4.20
202 203 7.348956 TGTGTTTATATTATGGCAAATCGACG 58.651 34.615 0.00 0.00 0.00 5.12
203 204 6.302313 GTGTTTATATTATGGCAAATCGACGC 59.698 38.462 0.00 0.00 0.00 5.19
204 205 6.203915 TGTTTATATTATGGCAAATCGACGCT 59.796 34.615 0.00 0.00 0.00 5.07
205 206 4.668576 ATATTATGGCAAATCGACGCTG 57.331 40.909 0.00 0.00 0.00 5.18
206 207 2.017138 TTATGGCAAATCGACGCTGA 57.983 45.000 0.00 0.00 0.00 4.26
207 208 2.017138 TATGGCAAATCGACGCTGAA 57.983 45.000 0.00 0.00 0.00 3.02
208 209 1.382522 ATGGCAAATCGACGCTGAAT 58.617 45.000 0.00 0.00 0.00 2.57
209 210 1.164411 TGGCAAATCGACGCTGAATT 58.836 45.000 0.00 0.00 0.00 2.17
210 211 1.539388 TGGCAAATCGACGCTGAATTT 59.461 42.857 0.00 0.00 0.00 1.82
211 212 2.177173 GGCAAATCGACGCTGAATTTC 58.823 47.619 0.00 0.00 0.00 2.17
212 213 1.834178 GCAAATCGACGCTGAATTTCG 59.166 47.619 0.00 0.00 0.00 3.46
213 214 2.430956 CAAATCGACGCTGAATTTCGG 58.569 47.619 0.56 0.56 33.50 4.30
214 215 1.722011 AATCGACGCTGAATTTCGGT 58.278 45.000 7.07 0.00 33.50 4.69
215 216 0.999406 ATCGACGCTGAATTTCGGTG 59.001 50.000 15.57 15.57 39.10 4.94
218 219 3.606886 ACGCTGAATTTCGGTGTCT 57.393 47.368 16.79 0.00 42.31 3.41
219 220 1.429463 ACGCTGAATTTCGGTGTCTC 58.571 50.000 16.79 0.00 42.31 3.36
220 221 1.270094 ACGCTGAATTTCGGTGTCTCA 60.270 47.619 16.79 0.00 42.31 3.27
221 222 1.798223 CGCTGAATTTCGGTGTCTCAA 59.202 47.619 10.09 0.00 0.00 3.02
222 223 2.223144 CGCTGAATTTCGGTGTCTCAAA 59.777 45.455 10.09 0.00 0.00 2.69
223 224 3.303725 CGCTGAATTTCGGTGTCTCAAAA 60.304 43.478 10.09 0.00 0.00 2.44
224 225 4.613622 CGCTGAATTTCGGTGTCTCAAAAT 60.614 41.667 10.09 0.00 0.00 1.82
225 226 5.222631 GCTGAATTTCGGTGTCTCAAAATT 58.777 37.500 7.07 0.00 34.83 1.82
226 227 6.378582 GCTGAATTTCGGTGTCTCAAAATTA 58.621 36.000 7.07 0.00 32.90 1.40
227 228 6.861055 GCTGAATTTCGGTGTCTCAAAATTAA 59.139 34.615 7.07 0.00 32.90 1.40
228 229 7.542130 GCTGAATTTCGGTGTCTCAAAATTAAT 59.458 33.333 7.07 0.00 32.90 1.40
229 230 8.964420 TGAATTTCGGTGTCTCAAAATTAATC 57.036 30.769 0.00 0.00 32.90 1.75
230 231 8.572185 TGAATTTCGGTGTCTCAAAATTAATCA 58.428 29.630 0.00 0.00 32.90 2.57
231 232 9.405587 GAATTTCGGTGTCTCAAAATTAATCAA 57.594 29.630 0.00 0.00 32.90 2.57
232 233 9.757227 AATTTCGGTGTCTCAAAATTAATCAAA 57.243 25.926 0.00 0.00 31.43 2.69
233 234 9.927668 ATTTCGGTGTCTCAAAATTAATCAAAT 57.072 25.926 0.00 0.00 0.00 2.32
234 235 9.757227 TTTCGGTGTCTCAAAATTAATCAAATT 57.243 25.926 0.00 0.00 39.56 1.82
236 237 9.190858 TCGGTGTCTCAAAATTAATCAAATTTG 57.809 29.630 12.15 12.15 45.12 2.32
237 238 8.434661 CGGTGTCTCAAAATTAATCAAATTTGG 58.565 33.333 17.90 0.12 45.12 3.28
238 239 8.720562 GGTGTCTCAAAATTAATCAAATTTGGG 58.279 33.333 17.90 7.04 45.12 4.12
239 240 9.271828 GTGTCTCAAAATTAATCAAATTTGGGT 57.728 29.630 17.90 8.75 45.12 4.51
240 241 9.487790 TGTCTCAAAATTAATCAAATTTGGGTC 57.512 29.630 17.90 5.69 45.12 4.46
241 242 9.710900 GTCTCAAAATTAATCAAATTTGGGTCT 57.289 29.630 17.90 3.40 45.12 3.85
242 243 9.927668 TCTCAAAATTAATCAAATTTGGGTCTC 57.072 29.630 17.90 0.00 45.12 3.36
243 244 9.709495 CTCAAAATTAATCAAATTTGGGTCTCA 57.291 29.630 17.90 0.00 45.12 3.27
244 245 9.709495 TCAAAATTAATCAAATTTGGGTCTCAG 57.291 29.630 17.90 2.29 45.12 3.35
245 246 9.709495 CAAAATTAATCAAATTTGGGTCTCAGA 57.291 29.630 17.90 0.00 45.12 3.27
250 251 5.982890 TCAAATTTGGGTCTCAGATTTCC 57.017 39.130 17.90 0.00 37.87 3.13
251 252 5.392995 TCAAATTTGGGTCTCAGATTTCCA 58.607 37.500 17.90 0.00 37.87 3.53
252 253 5.243730 TCAAATTTGGGTCTCAGATTTCCAC 59.756 40.000 17.90 0.00 37.87 4.02
253 254 2.879103 TTGGGTCTCAGATTTCCACC 57.121 50.000 0.00 0.00 0.00 4.61
254 255 1.741028 TGGGTCTCAGATTTCCACCA 58.259 50.000 0.00 0.00 0.00 4.17
255 256 2.278245 TGGGTCTCAGATTTCCACCAT 58.722 47.619 0.00 0.00 0.00 3.55
256 257 2.649312 TGGGTCTCAGATTTCCACCATT 59.351 45.455 0.00 0.00 0.00 3.16
257 258 3.075882 TGGGTCTCAGATTTCCACCATTT 59.924 43.478 0.00 0.00 0.00 2.32
258 259 3.696548 GGGTCTCAGATTTCCACCATTTC 59.303 47.826 0.00 0.00 0.00 2.17
259 260 4.568592 GGGTCTCAGATTTCCACCATTTCT 60.569 45.833 0.00 0.00 0.00 2.52
260 261 5.012893 GGTCTCAGATTTCCACCATTTCTT 58.987 41.667 0.00 0.00 0.00 2.52
261 262 6.180472 GGTCTCAGATTTCCACCATTTCTTA 58.820 40.000 0.00 0.00 0.00 2.10
262 263 6.830838 GGTCTCAGATTTCCACCATTTCTTAT 59.169 38.462 0.00 0.00 0.00 1.73
263 264 7.012799 GGTCTCAGATTTCCACCATTTCTTATC 59.987 40.741 0.00 0.00 0.00 1.75
264 265 7.554118 GTCTCAGATTTCCACCATTTCTTATCA 59.446 37.037 0.00 0.00 0.00 2.15
265 266 8.108999 TCTCAGATTTCCACCATTTCTTATCAA 58.891 33.333 0.00 0.00 0.00 2.57
266 267 8.648698 TCAGATTTCCACCATTTCTTATCAAA 57.351 30.769 0.00 0.00 0.00 2.69
267 268 8.742777 TCAGATTTCCACCATTTCTTATCAAAG 58.257 33.333 0.00 0.00 0.00 2.77
268 269 8.526147 CAGATTTCCACCATTTCTTATCAAAGT 58.474 33.333 0.00 0.00 34.13 2.66
269 270 9.753674 AGATTTCCACCATTTCTTATCAAAGTA 57.246 29.630 0.00 0.00 34.13 2.24
275 276 8.872845 CCACCATTTCTTATCAAAGTAATTTGC 58.127 33.333 10.71 0.00 32.28 3.68
276 277 9.643693 CACCATTTCTTATCAAAGTAATTTGCT 57.356 29.630 10.71 4.05 32.28 3.91
287 288 8.592105 TCAAAGTAATTTGCTTTTGGATTCTG 57.408 30.769 10.71 0.00 34.32 3.02
288 289 8.203485 TCAAAGTAATTTGCTTTTGGATTCTGT 58.797 29.630 10.71 0.00 34.32 3.41
289 290 9.474920 CAAAGTAATTTGCTTTTGGATTCTGTA 57.525 29.630 9.43 0.00 34.32 2.74
291 292 9.643693 AAGTAATTTGCTTTTGGATTCTGTATG 57.356 29.630 0.00 0.00 0.00 2.39
292 293 8.806146 AGTAATTTGCTTTTGGATTCTGTATGT 58.194 29.630 0.00 0.00 0.00 2.29
299 300 9.219603 TGCTTTTGGATTCTGTATGTATATAGC 57.780 33.333 0.00 0.00 0.00 2.97
300 301 9.442047 GCTTTTGGATTCTGTATGTATATAGCT 57.558 33.333 0.00 0.00 0.00 3.32
322 323 8.970859 AGCTTAGTTTATTGCTCATCAATACT 57.029 30.769 0.00 0.00 44.77 2.12
323 324 9.401058 AGCTTAGTTTATTGCTCATCAATACTT 57.599 29.630 0.00 0.00 44.77 2.24
366 367 7.874252 TCCTATATACCTAAGAGACTCATCCC 58.126 42.308 5.02 0.00 0.00 3.85
367 368 7.064229 CCTATATACCTAAGAGACTCATCCCC 58.936 46.154 5.02 0.00 0.00 4.81
368 369 4.834406 ATACCTAAGAGACTCATCCCCA 57.166 45.455 5.02 0.00 0.00 4.96
369 370 2.753247 ACCTAAGAGACTCATCCCCAC 58.247 52.381 5.02 0.00 0.00 4.61
398 399 2.644992 GTTTTGGTGGCCGAGCTG 59.355 61.111 0.00 0.00 0.00 4.24
424 425 2.499205 CTGGAATCTGGCGCCGTA 59.501 61.111 23.90 13.09 0.00 4.02
430 431 0.179119 AATCTGGCGCCGTACAGTAC 60.179 55.000 23.90 0.00 36.17 2.73
432 433 1.080366 CTGGCGCCGTACAGTACAA 60.080 57.895 23.90 0.00 0.00 2.41
458 460 1.130955 GATGTGTGCACGCCTTTTTG 58.869 50.000 26.63 0.00 0.00 2.44
485 487 4.701171 AGAGGTATACGGTAGCTGCTAATC 59.299 45.833 11.57 6.11 0.00 1.75
583 585 1.975407 ATGTGCTTGCTGGGCTGAC 60.975 57.895 0.00 0.00 0.00 3.51
598 600 3.188667 GGGCTGACTTAAAAGTAGCACAC 59.811 47.826 17.87 9.53 39.88 3.82
607 609 3.464111 AAAGTAGCACACGTTGGTAGT 57.536 42.857 9.03 9.45 42.57 2.73
608 610 3.464111 AAGTAGCACACGTTGGTAGTT 57.536 42.857 16.96 16.96 43.88 2.24
620 2461 1.436326 TGGTAGTTGGTGGCAGGTAA 58.564 50.000 0.00 0.00 0.00 2.85
692 2723 1.633774 TGGCCTCGAGTTCTTCTTCT 58.366 50.000 12.31 0.00 0.00 2.85
707 2738 6.805016 TCTTCTTCTAGGAAGCAGAATCAT 57.195 37.500 7.06 0.00 41.55 2.45
726 2757 3.387699 TCATGGTAAGATCCAATCTCGCA 59.612 43.478 0.00 0.00 41.09 5.10
732 2763 1.155042 GATCCAATCTCGCATCTGCC 58.845 55.000 0.00 0.00 37.91 4.85
741 2772 0.175531 TCGCATCTGCCATTTCTCGA 59.824 50.000 0.00 0.00 37.91 4.04
791 2823 6.877236 TCTTTCTTTTGATTTTGGTGCTCTT 58.123 32.000 0.00 0.00 0.00 2.85
811 2844 1.831736 TCTCCTTGATTTCTCCCGGTC 59.168 52.381 0.00 0.00 0.00 4.79
851 4058 5.089970 TCCTGATGTTGGTTGTATCTGAG 57.910 43.478 0.00 0.00 0.00 3.35
940 4148 3.753272 CGGATTTGATGTTGTGGAGTCTT 59.247 43.478 0.00 0.00 0.00 3.01
1003 4211 2.031437 GTGATTTCTTCTGAGCCGATGC 59.969 50.000 0.00 0.00 37.95 3.91
1077 4345 1.299850 CTCGAACGATATGGCGGCA 60.300 57.895 16.34 16.34 35.12 5.69
1107 4375 2.042464 TCCACTGCATCTATGGGAGAC 58.958 52.381 6.60 0.00 36.87 3.36
1149 4417 3.064134 TCGTCGTCAACAAATCAAAAGCA 59.936 39.130 0.00 0.00 0.00 3.91
1194 4464 6.219473 AGAAACACACACACATTTTTGTCAA 58.781 32.000 0.00 0.00 0.00 3.18
1269 4540 9.489084 TGTAAGTTCAGATATTGAATATTCCCG 57.511 33.333 12.90 0.00 46.85 5.14
1282 4553 6.791303 TGAATATTCCCGTAAGAACAATTGC 58.209 36.000 12.90 0.00 43.02 3.56
1323 4594 6.692486 TGAATCTTCCTGTAAGTTCAGAGAC 58.308 40.000 4.49 0.00 37.61 3.36
1363 4634 5.689383 AAAAACGCATGTACAGAGTTCAT 57.311 34.783 0.33 0.00 0.00 2.57
1510 4802 9.320295 TCAACATTATTTTCTCATAAAACCCCT 57.680 29.630 0.00 0.00 0.00 4.79
1521 4813 9.983024 TTCTCATAAAACCCCTTGTTTATATCA 57.017 29.630 0.00 0.00 46.39 2.15
1545 4838 9.688091 TCAGTCTTGACAAGTAGAGAGTATATT 57.312 33.333 14.75 0.00 0.00 1.28
1673 4967 3.004734 GCTTATGCAGACAACAAGGTTGT 59.995 43.478 14.01 14.01 40.31 3.32
1720 5014 6.147164 CGGAACTAGCTTTGACATAGTTGAAA 59.853 38.462 4.33 0.00 39.28 2.69
1804 5098 2.511600 GGCTGAACGTCCATCGGG 60.512 66.667 0.00 0.00 44.69 5.14
1818 5112 2.484065 CCATCGGGAAAAATGCATGCAT 60.484 45.455 27.46 27.46 35.42 3.96
1886 5184 6.911250 AAAAGATAAATGTTTCCCGTTCCT 57.089 33.333 0.00 0.00 0.00 3.36
1887 5185 8.411991 AAAAAGATAAATGTTTCCCGTTCCTA 57.588 30.769 0.00 0.00 0.00 2.94
1888 5186 6.997239 AAGATAAATGTTTCCCGTTCCTAC 57.003 37.500 0.00 0.00 0.00 3.18
1889 5187 6.309389 AGATAAATGTTTCCCGTTCCTACT 57.691 37.500 0.00 0.00 0.00 2.57
1891 5189 7.270779 AGATAAATGTTTCCCGTTCCTACTAC 58.729 38.462 0.00 0.00 0.00 2.73
1979 5283 3.650409 GCTCGACGAGATGTGGATT 57.350 52.632 28.43 0.00 34.59 3.01
2047 5351 4.456911 ACATATGTGAACACAAAGCAGAGG 59.543 41.667 7.78 0.00 45.41 3.69
2272 5582 4.585955 AAACTTAACAGAGAGCAGTCGA 57.414 40.909 0.00 0.00 0.00 4.20
2344 5659 7.099764 TGAAGATCCTGAGTTCAAATACAGTC 58.900 38.462 0.00 0.00 0.00 3.51
2425 5741 4.047822 CGAGCATTTTAAGTGTTTTGGCA 58.952 39.130 0.00 0.00 0.00 4.92
2474 5790 6.536941 TGCAAAACTAATCTATACGACATGCA 59.463 34.615 0.00 0.00 35.45 3.96
2535 5851 5.016173 AGCATTATTTTTGGAGGTGTGCTA 58.984 37.500 0.00 0.00 38.49 3.49
2559 5875 4.064388 TGAGCGATGAGAAAATTGACACA 58.936 39.130 0.00 0.00 0.00 3.72
2560 5876 4.083855 TGAGCGATGAGAAAATTGACACAC 60.084 41.667 0.00 0.00 0.00 3.82
2561 5877 3.814842 AGCGATGAGAAAATTGACACACA 59.185 39.130 0.00 0.00 0.00 3.72
2563 5879 4.319766 GCGATGAGAAAATTGACACACACT 60.320 41.667 0.00 0.00 0.00 3.55
2564 5880 5.751680 CGATGAGAAAATTGACACACACTT 58.248 37.500 0.00 0.00 0.00 3.16
2565 5881 6.201517 CGATGAGAAAATTGACACACACTTT 58.798 36.000 0.00 0.00 33.81 2.66
2566 5882 6.358030 CGATGAGAAAATTGACACACACTTTC 59.642 38.462 0.00 0.00 31.76 2.62
2638 5954 5.296780 ACGCACAATCCTCATAGGTATTTTG 59.703 40.000 0.00 0.00 36.53 2.44
2711 6032 5.136828 TGCTGTGAAAATGTTTTCCTCCTA 58.863 37.500 13.85 0.00 44.48 2.94
2779 6101 2.225467 GGAGGTTGCCATAGAAGATGC 58.775 52.381 0.00 0.00 0.00 3.91
2935 6257 5.335976 GCGAGAAAGAATTTGAGGATGGTTT 60.336 40.000 0.00 0.00 39.27 3.27
2949 6271 3.181476 GGATGGTTTGGCATGTATGGTTC 60.181 47.826 0.00 0.00 0.00 3.62
2957 6279 2.098117 GGCATGTATGGTTCAGAAGCAC 59.902 50.000 17.24 6.60 42.32 4.40
3229 6553 8.967664 AGGTTAAGAACTTATTGTGTGTTGTA 57.032 30.769 0.00 0.00 0.00 2.41
3243 6567 3.062909 TGTGTTGTACTTTGACGAGCAAC 59.937 43.478 0.00 0.00 35.91 4.17
3262 6586 8.337532 CGAGCAACTTATATTGACATGAATCAA 58.662 33.333 0.00 0.00 42.62 2.57
3277 6602 3.559655 TGAATCAAGTCCTGTTGTTGACG 59.440 43.478 0.00 0.00 36.61 4.35
3285 6612 4.638421 AGTCCTGTTGTTGACGAAAAATCA 59.362 37.500 0.00 0.00 36.61 2.57
3302 6629 9.631639 CGAAAAATCAAAAGGTAAAAACACATC 57.368 29.630 0.00 0.00 0.00 3.06
3341 6674 2.555547 GCAGGGTGGTGTTGTGCTC 61.556 63.158 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.358148 GGAATGACATGAATGCATCTCTAAATT 58.642 33.333 0.00 0.00 30.68 1.82
2 3 7.308408 CGGAATGACATGAATGCATCTCTAAAT 60.308 37.037 0.00 0.00 30.68 1.40
3 4 6.017687 CGGAATGACATGAATGCATCTCTAAA 60.018 38.462 0.00 0.00 30.68 1.85
4 5 5.467735 CGGAATGACATGAATGCATCTCTAA 59.532 40.000 0.00 0.00 30.68 2.10
5 6 4.992951 CGGAATGACATGAATGCATCTCTA 59.007 41.667 0.00 0.00 30.68 2.43
6 7 3.813724 CGGAATGACATGAATGCATCTCT 59.186 43.478 0.00 0.00 30.68 3.10
7 8 3.058432 CCGGAATGACATGAATGCATCTC 60.058 47.826 0.00 0.60 30.68 2.75
8 9 2.882761 CCGGAATGACATGAATGCATCT 59.117 45.455 0.00 0.00 30.68 2.90
9 10 2.880268 TCCGGAATGACATGAATGCATC 59.120 45.455 0.00 0.00 30.68 3.91
10 11 2.934887 TCCGGAATGACATGAATGCAT 58.065 42.857 0.00 0.00 34.29 3.96
11 12 2.416680 TCCGGAATGACATGAATGCA 57.583 45.000 0.00 0.00 0.00 3.96
12 13 3.781079 TTTCCGGAATGACATGAATGC 57.219 42.857 19.62 0.00 0.00 3.56
13 14 7.433131 CACTTAATTTCCGGAATGACATGAATG 59.567 37.037 19.62 5.17 0.00 2.67
14 15 7.483307 CACTTAATTTCCGGAATGACATGAAT 58.517 34.615 19.62 2.46 0.00 2.57
15 16 6.624861 GCACTTAATTTCCGGAATGACATGAA 60.625 38.462 19.62 6.96 0.00 2.57
16 17 5.163663 GCACTTAATTTCCGGAATGACATGA 60.164 40.000 19.62 0.42 0.00 3.07
17 18 5.036737 GCACTTAATTTCCGGAATGACATG 58.963 41.667 19.62 13.23 0.00 3.21
18 19 4.201910 CGCACTTAATTTCCGGAATGACAT 60.202 41.667 19.62 5.38 0.00 3.06
19 20 3.126171 CGCACTTAATTTCCGGAATGACA 59.874 43.478 19.62 2.63 0.00 3.58
20 21 3.126343 ACGCACTTAATTTCCGGAATGAC 59.874 43.478 19.62 7.51 0.00 3.06
21 22 3.340034 ACGCACTTAATTTCCGGAATGA 58.660 40.909 19.62 3.96 0.00 2.57
22 23 3.757745 ACGCACTTAATTTCCGGAATG 57.242 42.857 19.62 13.25 0.00 2.67
23 24 5.883503 TTTACGCACTTAATTTCCGGAAT 57.116 34.783 19.62 6.63 0.00 3.01
24 25 5.686159 TTTTACGCACTTAATTTCCGGAA 57.314 34.783 14.35 14.35 0.00 4.30
25 26 5.469421 TCTTTTTACGCACTTAATTTCCGGA 59.531 36.000 0.00 0.00 0.00 5.14
26 27 5.691815 TCTTTTTACGCACTTAATTTCCGG 58.308 37.500 0.00 0.00 0.00 5.14
27 28 7.790861 AATCTTTTTACGCACTTAATTTCCG 57.209 32.000 0.00 0.00 0.00 4.30
32 33 9.414295 GGGTTTAAATCTTTTTACGCACTTAAT 57.586 29.630 0.00 0.00 0.00 1.40
33 34 8.631797 AGGGTTTAAATCTTTTTACGCACTTAA 58.368 29.630 0.00 0.00 0.00 1.85
34 35 8.168790 AGGGTTTAAATCTTTTTACGCACTTA 57.831 30.769 0.00 0.00 0.00 2.24
35 36 7.046292 AGGGTTTAAATCTTTTTACGCACTT 57.954 32.000 0.00 0.00 0.00 3.16
36 37 6.644248 AGGGTTTAAATCTTTTTACGCACT 57.356 33.333 0.00 0.00 0.00 4.40
37 38 6.364165 GGAAGGGTTTAAATCTTTTTACGCAC 59.636 38.462 0.00 0.00 0.00 5.34
38 39 6.448852 GGAAGGGTTTAAATCTTTTTACGCA 58.551 36.000 0.00 0.00 0.00 5.24
39 40 5.865552 GGGAAGGGTTTAAATCTTTTTACGC 59.134 40.000 0.00 0.00 0.00 4.42
40 41 6.983984 TGGGAAGGGTTTAAATCTTTTTACG 58.016 36.000 0.00 0.00 0.00 3.18
41 42 9.787435 AATTGGGAAGGGTTTAAATCTTTTTAC 57.213 29.630 0.00 0.00 0.00 2.01
45 46 9.958180 CAATAATTGGGAAGGGTTTAAATCTTT 57.042 29.630 0.00 0.00 0.00 2.52
46 47 8.046708 GCAATAATTGGGAAGGGTTTAAATCTT 58.953 33.333 0.00 2.77 0.00 2.40
47 48 7.402941 AGCAATAATTGGGAAGGGTTTAAATCT 59.597 33.333 0.00 0.00 0.00 2.40
48 49 7.564793 AGCAATAATTGGGAAGGGTTTAAATC 58.435 34.615 0.00 0.00 0.00 2.17
49 50 7.402941 AGAGCAATAATTGGGAAGGGTTTAAAT 59.597 33.333 0.00 0.00 0.00 1.40
50 51 6.728632 AGAGCAATAATTGGGAAGGGTTTAAA 59.271 34.615 0.00 0.00 0.00 1.52
51 52 6.260663 AGAGCAATAATTGGGAAGGGTTTAA 58.739 36.000 0.00 0.00 0.00 1.52
52 53 5.837829 AGAGCAATAATTGGGAAGGGTTTA 58.162 37.500 0.00 0.00 0.00 2.01
53 54 4.687976 AGAGCAATAATTGGGAAGGGTTT 58.312 39.130 0.00 0.00 0.00 3.27
54 55 4.281657 GAGAGCAATAATTGGGAAGGGTT 58.718 43.478 0.00 0.00 0.00 4.11
55 56 3.685550 CGAGAGCAATAATTGGGAAGGGT 60.686 47.826 0.00 0.00 0.00 4.34
56 57 2.880890 CGAGAGCAATAATTGGGAAGGG 59.119 50.000 0.00 0.00 0.00 3.95
57 58 3.808728 TCGAGAGCAATAATTGGGAAGG 58.191 45.455 0.00 0.00 0.00 3.46
58 59 4.446371 ACTCGAGAGCAATAATTGGGAAG 58.554 43.478 21.68 0.00 0.00 3.46
59 60 4.487714 ACTCGAGAGCAATAATTGGGAA 57.512 40.909 21.68 0.00 0.00 3.97
60 61 4.191544 CAACTCGAGAGCAATAATTGGGA 58.808 43.478 21.68 0.00 0.00 4.37
61 62 3.242870 GCAACTCGAGAGCAATAATTGGG 60.243 47.826 21.68 0.00 0.00 4.12
62 63 3.624861 AGCAACTCGAGAGCAATAATTGG 59.375 43.478 27.24 1.44 0.00 3.16
63 64 4.871993 AGCAACTCGAGAGCAATAATTG 57.128 40.909 27.24 16.85 0.00 2.32
64 65 4.509600 GCTAGCAACTCGAGAGCAATAATT 59.490 41.667 27.24 13.89 33.26 1.40
65 66 4.054671 GCTAGCAACTCGAGAGCAATAAT 58.945 43.478 27.24 14.43 33.26 1.28
66 67 3.119137 TGCTAGCAACTCGAGAGCAATAA 60.119 43.478 27.24 13.38 40.07 1.40
67 68 2.427095 TGCTAGCAACTCGAGAGCAATA 59.573 45.455 27.24 15.74 40.07 1.90
68 69 1.205655 TGCTAGCAACTCGAGAGCAAT 59.794 47.619 27.24 15.51 40.07 3.56
69 70 0.603065 TGCTAGCAACTCGAGAGCAA 59.397 50.000 27.24 11.98 40.07 3.91
70 71 0.603065 TTGCTAGCAACTCGAGAGCA 59.397 50.000 26.06 23.35 41.23 4.26
71 72 1.857837 GATTGCTAGCAACTCGAGAGC 59.142 52.381 31.51 21.47 38.88 4.09
72 73 2.115595 CGATTGCTAGCAACTCGAGAG 58.884 52.381 34.16 19.51 38.88 3.20
73 74 1.472878 ACGATTGCTAGCAACTCGAGA 59.527 47.619 38.69 21.38 38.72 4.04
74 75 1.914634 ACGATTGCTAGCAACTCGAG 58.085 50.000 38.69 27.90 38.72 4.04
75 76 3.629058 GATACGATTGCTAGCAACTCGA 58.371 45.455 38.69 29.63 38.72 4.04
76 77 2.402049 CGATACGATTGCTAGCAACTCG 59.598 50.000 34.80 34.80 39.89 4.18
77 78 2.726760 CCGATACGATTGCTAGCAACTC 59.273 50.000 31.51 24.91 38.88 3.01
78 79 2.545952 CCCGATACGATTGCTAGCAACT 60.546 50.000 31.51 19.98 38.88 3.16
79 80 1.792949 CCCGATACGATTGCTAGCAAC 59.207 52.381 31.51 22.26 38.88 4.17
80 81 1.270094 CCCCGATACGATTGCTAGCAA 60.270 52.381 31.05 31.05 40.47 3.91
81 82 0.317160 CCCCGATACGATTGCTAGCA 59.683 55.000 14.93 14.93 0.00 3.49
82 83 0.389948 CCCCCGATACGATTGCTAGC 60.390 60.000 8.10 8.10 0.00 3.42
83 84 0.966920 ACCCCCGATACGATTGCTAG 59.033 55.000 0.00 0.00 0.00 3.42
84 85 0.963962 GACCCCCGATACGATTGCTA 59.036 55.000 0.00 0.00 0.00 3.49
85 86 1.046472 TGACCCCCGATACGATTGCT 61.046 55.000 0.00 0.00 0.00 3.91
86 87 0.600255 CTGACCCCCGATACGATTGC 60.600 60.000 0.00 0.00 0.00 3.56
87 88 0.750850 ACTGACCCCCGATACGATTG 59.249 55.000 0.00 0.00 0.00 2.67
88 89 1.492764 AACTGACCCCCGATACGATT 58.507 50.000 0.00 0.00 0.00 3.34
89 90 2.236766 CTAACTGACCCCCGATACGAT 58.763 52.381 0.00 0.00 0.00 3.73
90 91 1.683943 CTAACTGACCCCCGATACGA 58.316 55.000 0.00 0.00 0.00 3.43
91 92 0.031721 GCTAACTGACCCCCGATACG 59.968 60.000 0.00 0.00 0.00 3.06
92 93 1.411041 AGCTAACTGACCCCCGATAC 58.589 55.000 0.00 0.00 0.00 2.24
93 94 2.170012 AAGCTAACTGACCCCCGATA 57.830 50.000 0.00 0.00 0.00 2.92
94 95 1.209747 GAAAGCTAACTGACCCCCGAT 59.790 52.381 0.00 0.00 0.00 4.18
95 96 0.611714 GAAAGCTAACTGACCCCCGA 59.388 55.000 0.00 0.00 0.00 5.14
96 97 0.323629 TGAAAGCTAACTGACCCCCG 59.676 55.000 0.00 0.00 0.00 5.73
97 98 2.224793 ACTTGAAAGCTAACTGACCCCC 60.225 50.000 0.00 0.00 0.00 5.40
98 99 3.075148 GACTTGAAAGCTAACTGACCCC 58.925 50.000 0.00 0.00 0.00 4.95
99 100 3.740115 TGACTTGAAAGCTAACTGACCC 58.260 45.455 0.00 0.00 0.00 4.46
100 101 5.057149 TCTTGACTTGAAAGCTAACTGACC 58.943 41.667 0.00 0.00 0.00 4.02
101 102 6.793492 ATCTTGACTTGAAAGCTAACTGAC 57.207 37.500 0.00 0.00 0.00 3.51
102 103 7.172190 CAGAATCTTGACTTGAAAGCTAACTGA 59.828 37.037 0.00 0.00 0.00 3.41
103 104 7.172190 TCAGAATCTTGACTTGAAAGCTAACTG 59.828 37.037 0.00 0.00 0.00 3.16
104 105 7.220030 TCAGAATCTTGACTTGAAAGCTAACT 58.780 34.615 0.00 0.00 0.00 2.24
105 106 7.426929 TCAGAATCTTGACTTGAAAGCTAAC 57.573 36.000 0.00 0.00 0.00 2.34
106 107 7.308229 GCTTCAGAATCTTGACTTGAAAGCTAA 60.308 37.037 0.00 0.00 0.00 3.09
107 108 6.148480 GCTTCAGAATCTTGACTTGAAAGCTA 59.852 38.462 0.00 0.00 0.00 3.32
108 109 5.048852 GCTTCAGAATCTTGACTTGAAAGCT 60.049 40.000 0.00 0.00 0.00 3.74
109 110 5.152804 GCTTCAGAATCTTGACTTGAAAGC 58.847 41.667 0.00 0.00 0.00 3.51
110 111 6.309712 TGCTTCAGAATCTTGACTTGAAAG 57.690 37.500 0.00 0.00 0.00 2.62
111 112 6.543465 TCTTGCTTCAGAATCTTGACTTGAAA 59.457 34.615 0.00 0.00 0.00 2.69
112 113 6.017605 GTCTTGCTTCAGAATCTTGACTTGAA 60.018 38.462 0.00 0.00 0.00 2.69
113 114 5.468072 GTCTTGCTTCAGAATCTTGACTTGA 59.532 40.000 0.00 0.00 0.00 3.02
114 115 5.469421 AGTCTTGCTTCAGAATCTTGACTTG 59.531 40.000 6.63 0.00 0.00 3.16
115 116 5.619220 AGTCTTGCTTCAGAATCTTGACTT 58.381 37.500 6.63 0.00 0.00 3.01
116 117 5.226194 AGTCTTGCTTCAGAATCTTGACT 57.774 39.130 6.63 6.63 0.00 3.41
117 118 5.938438 AAGTCTTGCTTCAGAATCTTGAC 57.062 39.130 0.00 0.00 30.06 3.18
133 134 5.363580 TCATTTTTCTTGGCAAGGAAGTCTT 59.636 36.000 25.92 7.76 35.79 3.01
134 135 4.895297 TCATTTTTCTTGGCAAGGAAGTCT 59.105 37.500 25.92 9.92 0.00 3.24
135 136 5.200368 TCATTTTTCTTGGCAAGGAAGTC 57.800 39.130 25.92 0.00 0.00 3.01
136 137 5.813513 ATCATTTTTCTTGGCAAGGAAGT 57.186 34.783 25.92 13.77 0.00 3.01
137 138 6.367969 CAGAATCATTTTTCTTGGCAAGGAAG 59.632 38.462 25.92 12.77 33.69 3.46
138 139 6.041865 TCAGAATCATTTTTCTTGGCAAGGAA 59.958 34.615 25.92 21.65 33.69 3.36
139 140 5.539574 TCAGAATCATTTTTCTTGGCAAGGA 59.460 36.000 25.92 16.40 33.69 3.36
140 141 5.786311 TCAGAATCATTTTTCTTGGCAAGG 58.214 37.500 25.92 9.74 33.69 3.61
141 142 6.128634 GCTTCAGAATCATTTTTCTTGGCAAG 60.129 38.462 21.17 21.17 33.69 4.01
142 143 5.697633 GCTTCAGAATCATTTTTCTTGGCAA 59.302 36.000 0.00 0.00 33.69 4.52
143 144 5.221481 TGCTTCAGAATCATTTTTCTTGGCA 60.221 36.000 0.00 0.00 33.69 4.92
144 145 5.232463 TGCTTCAGAATCATTTTTCTTGGC 58.768 37.500 0.00 0.00 33.69 4.52
145 146 6.128634 GCTTGCTTCAGAATCATTTTTCTTGG 60.129 38.462 0.00 0.00 33.69 3.61
146 147 6.128634 GGCTTGCTTCAGAATCATTTTTCTTG 60.129 38.462 0.00 0.00 33.69 3.02
147 148 5.930569 GGCTTGCTTCAGAATCATTTTTCTT 59.069 36.000 0.00 0.00 33.69 2.52
148 149 5.011329 TGGCTTGCTTCAGAATCATTTTTCT 59.989 36.000 0.00 0.00 36.38 2.52
149 150 5.232463 TGGCTTGCTTCAGAATCATTTTTC 58.768 37.500 0.00 0.00 0.00 2.29
150 151 5.217978 TGGCTTGCTTCAGAATCATTTTT 57.782 34.783 0.00 0.00 0.00 1.94
151 152 4.817517 CTGGCTTGCTTCAGAATCATTTT 58.182 39.130 0.00 0.00 33.11 1.82
152 153 3.368116 GCTGGCTTGCTTCAGAATCATTT 60.368 43.478 3.66 0.00 33.11 2.32
153 154 2.165845 GCTGGCTTGCTTCAGAATCATT 59.834 45.455 3.66 0.00 33.11 2.57
154 155 1.749634 GCTGGCTTGCTTCAGAATCAT 59.250 47.619 3.66 0.00 33.11 2.45
155 156 1.171308 GCTGGCTTGCTTCAGAATCA 58.829 50.000 3.66 0.00 33.11 2.57
156 157 1.171308 TGCTGGCTTGCTTCAGAATC 58.829 50.000 3.66 0.00 33.11 2.52
157 158 1.848652 ATGCTGGCTTGCTTCAGAAT 58.151 45.000 3.66 0.00 33.11 2.40
158 159 1.271379 CAATGCTGGCTTGCTTCAGAA 59.729 47.619 3.66 0.00 33.11 3.02
159 160 0.885879 CAATGCTGGCTTGCTTCAGA 59.114 50.000 3.66 0.00 33.11 3.27
160 161 0.601558 ACAATGCTGGCTTGCTTCAG 59.398 50.000 4.89 0.00 0.00 3.02
161 162 0.315886 CACAATGCTGGCTTGCTTCA 59.684 50.000 4.89 0.00 0.00 3.02
162 163 0.316204 ACACAATGCTGGCTTGCTTC 59.684 50.000 4.89 0.00 0.00 3.86
163 164 0.754472 AACACAATGCTGGCTTGCTT 59.246 45.000 4.89 0.00 0.00 3.91
164 165 0.754472 AAACACAATGCTGGCTTGCT 59.246 45.000 4.89 0.00 0.00 3.91
165 166 2.437200 TAAACACAATGCTGGCTTGC 57.563 45.000 0.00 0.00 0.00 4.01
166 167 7.383029 CCATAATATAAACACAATGCTGGCTTG 59.617 37.037 0.00 0.00 0.00 4.01
167 168 7.436118 CCATAATATAAACACAATGCTGGCTT 58.564 34.615 0.00 0.00 0.00 4.35
168 169 6.517194 GCCATAATATAAACACAATGCTGGCT 60.517 38.462 0.00 0.00 40.75 4.75
169 170 5.634859 GCCATAATATAAACACAATGCTGGC 59.365 40.000 0.00 0.00 37.68 4.85
170 171 6.747125 TGCCATAATATAAACACAATGCTGG 58.253 36.000 0.00 0.00 0.00 4.85
171 172 8.645730 TTTGCCATAATATAAACACAATGCTG 57.354 30.769 0.00 0.00 0.00 4.41
172 173 9.480053 GATTTGCCATAATATAAACACAATGCT 57.520 29.630 0.00 0.00 0.00 3.79
173 174 8.427012 CGATTTGCCATAATATAAACACAATGC 58.573 33.333 0.00 0.00 0.00 3.56
174 175 9.676195 TCGATTTGCCATAATATAAACACAATG 57.324 29.630 0.00 0.00 0.00 2.82
175 176 9.677567 GTCGATTTGCCATAATATAAACACAAT 57.322 29.630 0.00 0.00 0.00 2.71
176 177 7.853437 CGTCGATTTGCCATAATATAAACACAA 59.147 33.333 0.00 0.00 0.00 3.33
177 178 7.348956 CGTCGATTTGCCATAATATAAACACA 58.651 34.615 0.00 0.00 0.00 3.72
178 179 6.302313 GCGTCGATTTGCCATAATATAAACAC 59.698 38.462 0.00 0.00 0.00 3.32
179 180 6.203915 AGCGTCGATTTGCCATAATATAAACA 59.796 34.615 0.00 0.00 0.00 2.83
180 181 6.519761 CAGCGTCGATTTGCCATAATATAAAC 59.480 38.462 0.00 0.00 0.00 2.01
181 182 6.425417 TCAGCGTCGATTTGCCATAATATAAA 59.575 34.615 0.00 0.00 0.00 1.40
182 183 5.929415 TCAGCGTCGATTTGCCATAATATAA 59.071 36.000 0.00 0.00 0.00 0.98
183 184 5.474825 TCAGCGTCGATTTGCCATAATATA 58.525 37.500 0.00 0.00 0.00 0.86
184 185 4.314961 TCAGCGTCGATTTGCCATAATAT 58.685 39.130 0.00 0.00 0.00 1.28
185 186 3.723260 TCAGCGTCGATTTGCCATAATA 58.277 40.909 0.00 0.00 0.00 0.98
186 187 2.560504 TCAGCGTCGATTTGCCATAAT 58.439 42.857 0.00 0.00 0.00 1.28
187 188 2.017138 TCAGCGTCGATTTGCCATAA 57.983 45.000 0.00 0.00 0.00 1.90
188 189 2.017138 TTCAGCGTCGATTTGCCATA 57.983 45.000 0.00 0.00 0.00 2.74
189 190 1.382522 ATTCAGCGTCGATTTGCCAT 58.617 45.000 0.00 0.00 0.00 4.40
190 191 1.164411 AATTCAGCGTCGATTTGCCA 58.836 45.000 0.00 0.00 0.00 4.92
191 192 2.177173 GAAATTCAGCGTCGATTTGCC 58.823 47.619 0.00 0.00 0.00 4.52
192 193 1.834178 CGAAATTCAGCGTCGATTTGC 59.166 47.619 0.00 0.00 36.92 3.68
193 194 2.159707 ACCGAAATTCAGCGTCGATTTG 60.160 45.455 0.00 0.00 36.92 2.32
194 195 2.073816 ACCGAAATTCAGCGTCGATTT 58.926 42.857 0.00 0.00 36.92 2.17
195 196 1.393539 CACCGAAATTCAGCGTCGATT 59.606 47.619 0.00 0.00 36.92 3.34
196 197 0.999406 CACCGAAATTCAGCGTCGAT 59.001 50.000 0.00 0.00 36.92 3.59
197 198 0.319211 ACACCGAAATTCAGCGTCGA 60.319 50.000 0.00 0.00 36.92 4.20
198 199 0.093026 GACACCGAAATTCAGCGTCG 59.907 55.000 0.00 0.00 34.58 5.12
199 200 1.390463 GAGACACCGAAATTCAGCGTC 59.610 52.381 0.00 0.00 0.00 5.19
200 201 1.270094 TGAGACACCGAAATTCAGCGT 60.270 47.619 0.00 0.00 0.00 5.07
201 202 1.428448 TGAGACACCGAAATTCAGCG 58.572 50.000 0.00 0.00 0.00 5.18
202 203 3.896648 TTTGAGACACCGAAATTCAGC 57.103 42.857 0.00 0.00 0.00 4.26
203 204 8.970691 ATTAATTTTGAGACACCGAAATTCAG 57.029 30.769 0.00 0.00 39.52 3.02
204 205 8.572185 TGATTAATTTTGAGACACCGAAATTCA 58.428 29.630 0.00 0.00 39.52 2.57
205 206 8.964420 TGATTAATTTTGAGACACCGAAATTC 57.036 30.769 0.00 0.00 39.52 2.17
206 207 9.757227 TTTGATTAATTTTGAGACACCGAAATT 57.243 25.926 0.00 0.00 40.94 1.82
207 208 9.927668 ATTTGATTAATTTTGAGACACCGAAAT 57.072 25.926 0.00 0.00 32.91 2.17
208 209 9.757227 AATTTGATTAATTTTGAGACACCGAAA 57.243 25.926 0.00 0.00 32.48 3.46
209 210 9.757227 AAATTTGATTAATTTTGAGACACCGAA 57.243 25.926 0.00 0.00 42.40 4.30
210 211 9.190858 CAAATTTGATTAATTTTGAGACACCGA 57.809 29.630 13.08 0.00 42.40 4.69
211 212 8.434661 CCAAATTTGATTAATTTTGAGACACCG 58.565 33.333 19.86 0.00 42.40 4.94
212 213 8.720562 CCCAAATTTGATTAATTTTGAGACACC 58.279 33.333 19.86 0.00 42.40 4.16
213 214 9.271828 ACCCAAATTTGATTAATTTTGAGACAC 57.728 29.630 19.86 0.00 42.40 3.67
214 215 9.487790 GACCCAAATTTGATTAATTTTGAGACA 57.512 29.630 19.86 0.00 42.40 3.41
215 216 9.710900 AGACCCAAATTTGATTAATTTTGAGAC 57.289 29.630 19.86 6.40 42.40 3.36
216 217 9.927668 GAGACCCAAATTTGATTAATTTTGAGA 57.072 29.630 19.86 0.00 42.40 3.27
217 218 9.709495 TGAGACCCAAATTTGATTAATTTTGAG 57.291 29.630 19.86 7.87 42.40 3.02
218 219 9.709495 CTGAGACCCAAATTTGATTAATTTTGA 57.291 29.630 19.86 0.00 42.40 2.69
219 220 9.709495 TCTGAGACCCAAATTTGATTAATTTTG 57.291 29.630 19.86 9.45 42.40 2.44
224 225 8.531146 GGAAATCTGAGACCCAAATTTGATTAA 58.469 33.333 19.86 0.00 0.00 1.40
225 226 7.673504 TGGAAATCTGAGACCCAAATTTGATTA 59.326 33.333 19.86 0.00 0.00 1.75
226 227 6.497954 TGGAAATCTGAGACCCAAATTTGATT 59.502 34.615 19.86 5.50 0.00 2.57
227 228 6.018469 TGGAAATCTGAGACCCAAATTTGAT 58.982 36.000 19.86 7.17 0.00 2.57
228 229 5.243730 GTGGAAATCTGAGACCCAAATTTGA 59.756 40.000 19.86 0.00 0.00 2.69
229 230 5.473039 GTGGAAATCTGAGACCCAAATTTG 58.527 41.667 11.40 11.40 0.00 2.32
230 231 4.528206 GGTGGAAATCTGAGACCCAAATTT 59.472 41.667 2.28 0.00 0.00 1.82
231 232 4.089361 GGTGGAAATCTGAGACCCAAATT 58.911 43.478 2.28 0.00 0.00 1.82
232 233 3.075882 TGGTGGAAATCTGAGACCCAAAT 59.924 43.478 2.28 0.00 0.00 2.32
233 234 2.445145 TGGTGGAAATCTGAGACCCAAA 59.555 45.455 2.28 0.00 0.00 3.28
234 235 2.061848 TGGTGGAAATCTGAGACCCAA 58.938 47.619 2.28 0.00 0.00 4.12
235 236 1.741028 TGGTGGAAATCTGAGACCCA 58.259 50.000 0.00 0.00 0.00 4.51
236 237 3.372440 AATGGTGGAAATCTGAGACCC 57.628 47.619 0.00 0.00 0.00 4.46
237 238 4.593956 AGAAATGGTGGAAATCTGAGACC 58.406 43.478 0.00 0.00 0.00 3.85
238 239 7.554118 TGATAAGAAATGGTGGAAATCTGAGAC 59.446 37.037 0.00 0.00 0.00 3.36
239 240 7.632861 TGATAAGAAATGGTGGAAATCTGAGA 58.367 34.615 0.00 0.00 0.00 3.27
240 241 7.870509 TGATAAGAAATGGTGGAAATCTGAG 57.129 36.000 0.00 0.00 0.00 3.35
241 242 8.648698 TTTGATAAGAAATGGTGGAAATCTGA 57.351 30.769 0.00 0.00 0.00 3.27
242 243 8.526147 ACTTTGATAAGAAATGGTGGAAATCTG 58.474 33.333 0.00 0.00 35.30 2.90
243 244 8.655935 ACTTTGATAAGAAATGGTGGAAATCT 57.344 30.769 0.00 0.00 35.30 2.40
249 250 8.872845 GCAAATTACTTTGATAAGAAATGGTGG 58.127 33.333 9.55 0.00 43.71 4.61
250 251 9.643693 AGCAAATTACTTTGATAAGAAATGGTG 57.356 29.630 9.55 0.00 43.71 4.17
261 262 9.211485 CAGAATCCAAAAGCAAATTACTTTGAT 57.789 29.630 9.55 0.00 43.71 2.57
262 263 8.203485 ACAGAATCCAAAAGCAAATTACTTTGA 58.797 29.630 9.55 3.03 43.71 2.69
263 264 8.369218 ACAGAATCCAAAAGCAAATTACTTTG 57.631 30.769 7.05 1.35 43.81 2.77
265 266 9.643693 CATACAGAATCCAAAAGCAAATTACTT 57.356 29.630 0.00 0.00 0.00 2.24
266 267 8.806146 ACATACAGAATCCAAAAGCAAATTACT 58.194 29.630 0.00 0.00 0.00 2.24
267 268 8.986477 ACATACAGAATCCAAAAGCAAATTAC 57.014 30.769 0.00 0.00 0.00 1.89
273 274 9.219603 GCTATATACATACAGAATCCAAAAGCA 57.780 33.333 0.00 0.00 0.00 3.91
274 275 9.442047 AGCTATATACATACAGAATCCAAAAGC 57.558 33.333 0.00 0.00 0.00 3.51
340 341 8.507761 GGGATGAGTCTCTTAGGTATATAGGAT 58.492 40.741 0.65 0.00 0.00 3.24
341 342 7.091902 GGGGATGAGTCTCTTAGGTATATAGGA 60.092 44.444 0.65 0.00 0.00 2.94
342 343 7.064229 GGGGATGAGTCTCTTAGGTATATAGG 58.936 46.154 0.65 0.00 0.00 2.57
343 344 7.558444 GTGGGGATGAGTCTCTTAGGTATATAG 59.442 44.444 0.65 0.00 0.00 1.31
344 345 7.242101 AGTGGGGATGAGTCTCTTAGGTATATA 59.758 40.741 0.65 0.00 0.00 0.86
345 346 6.047359 AGTGGGGATGAGTCTCTTAGGTATAT 59.953 42.308 0.65 0.00 0.00 0.86
346 347 5.375956 AGTGGGGATGAGTCTCTTAGGTATA 59.624 44.000 0.65 0.00 0.00 1.47
347 348 4.171044 AGTGGGGATGAGTCTCTTAGGTAT 59.829 45.833 0.65 0.00 0.00 2.73
348 349 3.532232 AGTGGGGATGAGTCTCTTAGGTA 59.468 47.826 0.65 0.00 0.00 3.08
349 350 2.316372 AGTGGGGATGAGTCTCTTAGGT 59.684 50.000 0.65 0.00 0.00 3.08
350 351 3.039252 AGTGGGGATGAGTCTCTTAGG 57.961 52.381 0.65 0.00 0.00 2.69
351 352 5.055265 TCTAGTGGGGATGAGTCTCTTAG 57.945 47.826 0.65 0.00 0.00 2.18
352 353 4.727332 TCTCTAGTGGGGATGAGTCTCTTA 59.273 45.833 0.65 0.00 0.00 2.10
353 354 3.529734 TCTCTAGTGGGGATGAGTCTCTT 59.470 47.826 0.65 0.00 0.00 2.85
354 355 3.127250 TCTCTAGTGGGGATGAGTCTCT 58.873 50.000 0.65 0.00 0.00 3.10
355 356 3.117663 ACTCTCTAGTGGGGATGAGTCTC 60.118 52.174 0.00 0.00 33.57 3.36
356 357 2.856231 ACTCTCTAGTGGGGATGAGTCT 59.144 50.000 0.00 0.00 33.57 3.24
357 358 3.306472 ACTCTCTAGTGGGGATGAGTC 57.694 52.381 0.00 0.00 33.57 3.36
368 369 1.692519 ACCAAAACGCCACTCTCTAGT 59.307 47.619 0.00 0.00 35.91 2.57
369 370 2.069273 CACCAAAACGCCACTCTCTAG 58.931 52.381 0.00 0.00 0.00 2.43
408 409 2.185867 GTACGGCGCCAGATTCCA 59.814 61.111 28.98 0.00 0.00 3.53
424 425 0.319555 ACATCGCAGCGTTGTACTGT 60.320 50.000 26.29 13.03 37.89 3.55
430 431 2.500369 GCACACATCGCAGCGTTG 60.500 61.111 21.67 21.67 33.50 4.10
432 433 3.716006 GTGCACACATCGCAGCGT 61.716 61.111 15.93 0.00 40.78 5.07
458 460 2.553172 CAGCTACCGTATACCTCTGACC 59.447 54.545 0.00 0.00 0.00 4.02
520 522 2.340809 CGAGGCCCACGTACAACA 59.659 61.111 0.00 0.00 0.00 3.33
583 585 4.806342 ACCAACGTGTGCTACTTTTAAG 57.194 40.909 0.00 0.00 0.00 1.85
598 600 1.234615 CCTGCCACCAACTACCAACG 61.235 60.000 0.00 0.00 0.00 4.10
607 609 2.160171 AGCCCTTACCTGCCACCAA 61.160 57.895 0.00 0.00 0.00 3.67
608 610 2.531685 AGCCCTTACCTGCCACCA 60.532 61.111 0.00 0.00 0.00 4.17
620 2461 0.255890 ATTAATGTCGCACCAGCCCT 59.744 50.000 0.00 0.00 37.52 5.19
692 2723 6.239714 GGATCTTACCATGATTCTGCTTCCTA 60.240 42.308 0.00 0.00 0.00 2.94
707 2738 3.643320 AGATGCGAGATTGGATCTTACCA 59.357 43.478 0.00 0.00 43.52 3.25
726 2757 0.531532 CGGCTCGAGAAATGGCAGAT 60.532 55.000 18.75 0.00 0.00 2.90
791 2823 1.831736 GACCGGGAGAAATCAAGGAGA 59.168 52.381 6.32 0.00 0.00 3.71
811 2844 4.040952 TCAGGAAGAAGAACTCAAGAAGGG 59.959 45.833 0.00 0.00 0.00 3.95
851 4058 5.518128 CAGCACATACACAGTTCTCATCTAC 59.482 44.000 0.00 0.00 0.00 2.59
940 4148 2.601240 TCATGGATGGAAGCAACCAA 57.399 45.000 6.01 0.00 43.47 3.67
1003 4211 0.039256 CCAACATTTGCCTCCACACG 60.039 55.000 0.00 0.00 0.00 4.49
1077 4345 2.497675 AGATGCAGTGGACGTATTCTGT 59.502 45.455 12.55 0.00 0.00 3.41
1107 4375 0.179089 CACCTTCTGCATCTCCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
1149 4417 0.898789 ACCGTCGAGTCCAACAGGAT 60.899 55.000 0.00 0.00 33.13 3.24
1194 4464 1.635487 TCTGGCCTAACAGCAAAGGAT 59.365 47.619 3.32 0.00 38.36 3.24
1263 4534 4.522789 ACAAGCAATTGTTCTTACGGGAAT 59.477 37.500 7.40 0.00 0.00 3.01
1269 4540 8.342634 TCTGAACTTACAAGCAATTGTTCTTAC 58.657 33.333 7.40 0.00 36.44 2.34
1282 4553 8.663911 GGAAGATTCAATCTCTGAACTTACAAG 58.336 37.037 0.00 0.00 46.80 3.16
1506 4797 6.414732 TGTCAAGACTGATATAAACAAGGGG 58.585 40.000 1.53 0.00 33.05 4.79
1641 4935 1.000171 TCTGCATAAGCTCGCATCGAT 60.000 47.619 5.95 0.00 42.74 3.59
1644 4938 1.575244 TGTCTGCATAAGCTCGCATC 58.425 50.000 5.95 4.27 42.74 3.91
1673 4967 0.881159 CGCCGGGTTAACAACAGTGA 60.881 55.000 2.18 0.00 0.00 3.41
1804 5098 5.049954 ACACAAACTCATGCATGCATTTTTC 60.050 36.000 30.32 0.00 33.90 2.29
1818 5112 2.103647 ACACGCGCACACAAACTCA 61.104 52.632 5.73 0.00 0.00 3.41
1869 5167 6.610075 AGTAGTAGGAACGGGAAACATTTA 57.390 37.500 0.00 0.00 0.00 1.40
1883 5181 9.515226 AGCATACAAAATGAAAAAGTAGTAGGA 57.485 29.630 0.00 0.00 0.00 2.94
1887 5185 9.066892 TGAGAGCATACAAAATGAAAAAGTAGT 57.933 29.630 0.00 0.00 0.00 2.73
1924 5228 0.457443 GGCTTGCCCTGCATAGTTTC 59.543 55.000 0.00 0.00 38.76 2.78
1971 5275 0.258484 TCAATGCGGGGAATCCACAT 59.742 50.000 1.09 0.00 34.18 3.21
1986 5290 4.166725 TCCCATCTAAGAACCTGCATCAAT 59.833 41.667 0.00 0.00 0.00 2.57
1994 5298 6.851836 TCCTTTATCATCCCATCTAAGAACCT 59.148 38.462 0.00 0.00 0.00 3.50
2006 5310 7.554118 CACATATGTACCATCCTTTATCATCCC 59.446 40.741 8.32 0.00 0.00 3.85
2047 5351 2.175878 ACTGAGACTGCATGGTTGTC 57.824 50.000 0.00 0.00 0.00 3.18
2201 5507 1.355381 TGAATGGCACCTCCTTCACAT 59.645 47.619 0.00 0.00 31.53 3.21
2272 5582 9.180678 CTCTATTGTTTTTGTAGCATCGTTTTT 57.819 29.630 0.00 0.00 0.00 1.94
2344 5659 3.272574 ACCATCACTATCAACCTGCAG 57.727 47.619 6.78 6.78 0.00 4.41
2381 5696 1.207089 TGCTTCTCCCTATTGTCCACG 59.793 52.381 0.00 0.00 0.00 4.94
2409 5724 5.181748 ACAGCATTGCCAAAACACTTAAAA 58.818 33.333 4.70 0.00 0.00 1.52
2425 5741 3.722555 CGTATCAAACGTGACAGCATT 57.277 42.857 0.00 0.00 46.72 3.56
2450 5766 6.943981 TGCATGTCGTATAGATTAGTTTTGC 58.056 36.000 0.00 0.00 0.00 3.68
2474 5790 0.182775 ACCAACGAAGAGGCCAAACT 59.817 50.000 5.01 0.00 0.00 2.66
2535 5851 5.181811 TGTGTCAATTTTCTCATCGCTCATT 59.818 36.000 0.00 0.00 0.00 2.57
2711 6032 8.225603 ACAACATTTTTCTGTCAGTACATTCT 57.774 30.769 0.00 0.00 34.37 2.40
2779 6101 2.223317 CGATGTGTTGTATGTGGCATGG 60.223 50.000 0.00 0.00 0.00 3.66
2861 6183 3.967987 ACTCCTGTTTGAACTCACTACCT 59.032 43.478 0.00 0.00 0.00 3.08
2935 6257 2.290832 TGCTTCTGAACCATACATGCCA 60.291 45.455 0.00 0.00 0.00 4.92
2949 6271 5.856126 TTATTTTGTAGACCGTGCTTCTG 57.144 39.130 0.00 0.00 0.00 3.02
2981 6303 8.404107 TCATCCGAGTCTCATATATTTGTGTA 57.596 34.615 0.00 0.00 0.00 2.90
3209 6532 8.952278 TCAAAGTACAACACACAATAAGTTCTT 58.048 29.630 0.00 0.00 0.00 2.52
3214 6537 6.939627 TCGTCAAAGTACAACACACAATAAG 58.060 36.000 0.00 0.00 0.00 1.73
3217 6540 4.260620 GCTCGTCAAAGTACAACACACAAT 60.261 41.667 0.00 0.00 0.00 2.71
3229 6553 6.649141 TGTCAATATAAGTTGCTCGTCAAAGT 59.351 34.615 0.00 0.00 36.26 2.66
3243 6567 9.334947 ACAGGACTTGATTCATGTCAATATAAG 57.665 33.333 25.35 13.43 35.67 1.73
3262 6586 4.638421 TGATTTTTCGTCAACAACAGGACT 59.362 37.500 0.00 0.00 31.88 3.85
3302 6629 6.093633 CCTGCATGTGGAGACATATCATTATG 59.906 42.308 2.87 0.00 46.14 1.90
3341 6674 3.632604 TCTCAATAGGTAGGTTCTGAGCG 59.367 47.826 0.00 0.00 32.22 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.