Multiple sequence alignment - TraesCS7D01G040000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G040000 chr7D 100.000 3551 0 0 400 3950 20327204 20330754 0.000000e+00 6558
1 TraesCS7D01G040000 chr7D 94.554 1212 64 1 1877 3086 20260198 20258987 0.000000e+00 1871
2 TraesCS7D01G040000 chr7D 94.171 995 25 4 893 1886 20262477 20261515 0.000000e+00 1485
3 TraesCS7D01G040000 chr7D 75.323 851 187 19 879 1724 16221822 16222654 1.720000e-103 387
4 TraesCS7D01G040000 chr7D 100.000 171 0 0 1 171 20326805 20326975 2.290000e-82 316
5 TraesCS7D01G040000 chr7D 88.166 169 13 3 1 166 20276924 20276760 1.120000e-45 195
6 TraesCS7D01G040000 chr7A 94.085 2739 107 16 405 3131 20443769 20446464 0.000000e+00 4109
7 TraesCS7D01G040000 chr7A 91.616 656 34 12 2553 3190 20595727 20596379 0.000000e+00 887
8 TraesCS7D01G040000 chr7A 90.909 396 33 2 2015 2410 20593049 20593441 2.700000e-146 529
9 TraesCS7D01G040000 chr7A 89.336 422 25 9 3521 3925 20596505 20596923 2.720000e-141 512
10 TraesCS7D01G040000 chr7A 94.767 172 8 1 3779 3950 20446667 20446837 2.340000e-67 267
11 TraesCS7D01G040000 chr7A 93.464 153 8 1 2409 2561 20594490 20594640 3.970000e-55 226
12 TraesCS7D01G040000 chr7A 85.965 171 3 6 1 171 20443607 20443756 3.160000e-36 163
13 TraesCS7D01G040000 chr6D 78.271 856 165 16 881 1727 426041809 426040966 7.520000e-147 531
14 TraesCS7D01G040000 chr6D 76.633 398 80 13 1832 2221 440645693 440646085 1.440000e-49 207
15 TraesCS7D01G040000 chr6D 92.308 143 11 0 3385 3527 291625850 291625708 1.860000e-48 204
16 TraesCS7D01G040000 chr6D 88.732 142 16 0 3387 3528 246433596 246433737 1.460000e-39 174
17 TraesCS7D01G040000 chr4A 86.354 469 37 8 2722 3177 713035853 713036307 1.650000e-133 486
18 TraesCS7D01G040000 chr7B 80.214 561 99 8 1159 1716 717229935 717229384 1.020000e-110 411
19 TraesCS7D01G040000 chr7B 80.036 561 100 8 1159 1716 717154463 717153912 4.750000e-109 405
20 TraesCS7D01G040000 chr5B 74.729 831 178 26 911 1728 26875660 26874849 3.780000e-90 342
21 TraesCS7D01G040000 chr5B 74.668 829 181 22 904 1725 571998072 571998878 1.360000e-89 340
22 TraesCS7D01G040000 chr3B 94.286 140 8 0 3385 3524 14468310 14468449 8.600000e-52 215
23 TraesCS7D01G040000 chr2D 92.053 151 11 1 3383 3532 196788430 196788280 1.110000e-50 211
24 TraesCS7D01G040000 chr5A 93.525 139 8 1 3386 3524 522490382 522490519 5.170000e-49 206
25 TraesCS7D01G040000 chr5A 92.857 140 10 0 3385 3524 566631079 566631218 1.860000e-48 204
26 TraesCS7D01G040000 chr3D 92.308 143 11 0 3385 3527 507637581 507637439 1.860000e-48 204
27 TraesCS7D01G040000 chr4D 91.608 143 12 0 3385 3527 318327113 318326971 8.660000e-47 198
28 TraesCS7D01G040000 chr1D 91.852 135 11 0 3392 3526 466130706 466130572 5.210000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G040000 chr7D 20326805 20330754 3949 False 3437.0 6558 100.000000 1 3950 2 chr7D.!!$F2 3949
1 TraesCS7D01G040000 chr7D 20258987 20262477 3490 True 1678.0 1871 94.362500 893 3086 2 chr7D.!!$R2 2193
2 TraesCS7D01G040000 chr7D 16221822 16222654 832 False 387.0 387 75.323000 879 1724 1 chr7D.!!$F1 845
3 TraesCS7D01G040000 chr7A 20443607 20446837 3230 False 1513.0 4109 91.605667 1 3950 3 chr7A.!!$F1 3949
4 TraesCS7D01G040000 chr7A 20593049 20596923 3874 False 538.5 887 91.331250 2015 3925 4 chr7A.!!$F2 1910
5 TraesCS7D01G040000 chr6D 426040966 426041809 843 True 531.0 531 78.271000 881 1727 1 chr6D.!!$R2 846
6 TraesCS7D01G040000 chr7B 717229384 717229935 551 True 411.0 411 80.214000 1159 1716 1 chr7B.!!$R2 557
7 TraesCS7D01G040000 chr7B 717153912 717154463 551 True 405.0 405 80.036000 1159 1716 1 chr7B.!!$R1 557
8 TraesCS7D01G040000 chr5B 26874849 26875660 811 True 342.0 342 74.729000 911 1728 1 chr5B.!!$R1 817
9 TraesCS7D01G040000 chr5B 571998072 571998878 806 False 340.0 340 74.668000 904 1725 1 chr5B.!!$F1 821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.593128 CTGGTGGTGTTTGCTACTGC 59.407 55.0 0.0 0.0 40.2 4.40 F
520 521 0.811219 TCTGTGTGTGTGTGCTCTGC 60.811 55.0 0.0 0.0 0.0 4.26 F
521 522 0.812811 CTGTGTGTGTGTGCTCTGCT 60.813 55.0 0.0 0.0 0.0 4.24 F
2049 3392 0.033504 TGCCTCCGAAAGTCTGTGAC 59.966 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 3269 0.397941 CCTTGCAGTCTTCCAGGTCA 59.602 55.00 0.00 0.0 0.00 4.02 R
2049 3392 0.524862 GTGTCTGCAAATGCTCCAGG 59.475 55.00 6.97 0.0 42.66 4.45 R
2227 3572 4.726583 ACAGCATCATCTTCCAGCAATAT 58.273 39.13 0.00 0.0 0.00 1.28 R
3451 6962 0.035056 CCTCTTTCCCAACTCCGCAT 60.035 55.00 0.00 0.0 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 3.544684 TGGATCGATTTTGATCTGGTGG 58.455 45.455 0.00 0.00 43.46 4.61
85 86 3.054434 TGGATCGATTTTGATCTGGTGGT 60.054 43.478 0.00 0.00 43.46 4.16
86 87 3.313526 GGATCGATTTTGATCTGGTGGTG 59.686 47.826 0.00 0.00 43.46 4.17
87 88 3.417069 TCGATTTTGATCTGGTGGTGT 57.583 42.857 0.00 0.00 0.00 4.16
88 89 3.750371 TCGATTTTGATCTGGTGGTGTT 58.250 40.909 0.00 0.00 0.00 3.32
89 90 4.141287 TCGATTTTGATCTGGTGGTGTTT 58.859 39.130 0.00 0.00 0.00 2.83
90 91 4.023279 TCGATTTTGATCTGGTGGTGTTTG 60.023 41.667 0.00 0.00 0.00 2.93
91 92 3.451141 TTTTGATCTGGTGGTGTTTGC 57.549 42.857 0.00 0.00 0.00 3.68
92 93 2.363306 TTGATCTGGTGGTGTTTGCT 57.637 45.000 0.00 0.00 0.00 3.91
93 94 3.500448 TTGATCTGGTGGTGTTTGCTA 57.500 42.857 0.00 0.00 0.00 3.49
94 95 2.778299 TGATCTGGTGGTGTTTGCTAC 58.222 47.619 0.00 0.00 0.00 3.58
95 96 2.371841 TGATCTGGTGGTGTTTGCTACT 59.628 45.455 0.00 0.00 0.00 2.57
96 97 2.254546 TCTGGTGGTGTTTGCTACTG 57.745 50.000 0.00 0.00 0.00 2.74
97 98 0.593128 CTGGTGGTGTTTGCTACTGC 59.407 55.000 0.00 0.00 40.20 4.40
104 105 1.656095 GTGTTTGCTACTGCGCTAGAG 59.344 52.381 9.73 0.00 43.34 2.43
129 130 0.988832 ACCGCAAGTTAGGGATGGAA 59.011 50.000 0.00 0.00 0.00 3.53
139 140 2.514458 AGGGATGGAATTGCTTCGTT 57.486 45.000 6.74 0.00 31.75 3.85
140 141 2.807676 AGGGATGGAATTGCTTCGTTT 58.192 42.857 6.74 0.00 31.75 3.60
141 142 2.755103 AGGGATGGAATTGCTTCGTTTC 59.245 45.455 6.74 0.00 31.75 2.78
142 143 2.755103 GGGATGGAATTGCTTCGTTTCT 59.245 45.455 6.74 0.00 31.75 2.52
143 144 3.181496 GGGATGGAATTGCTTCGTTTCTC 60.181 47.826 6.74 0.00 31.75 2.87
144 145 3.485877 GGATGGAATTGCTTCGTTTCTCG 60.486 47.826 6.74 0.00 41.41 4.04
160 161 3.165058 TCTCGATCCGTTTTGATCTGG 57.835 47.619 0.00 0.00 39.20 3.86
164 165 2.369394 GATCCGTTTTGATCTGGGCTT 58.631 47.619 0.00 0.00 38.48 4.35
433 434 2.008329 GTGAATCTCTGCTCTGCAAGG 58.992 52.381 0.00 0.00 38.41 3.61
450 451 4.016444 GCAAGGGTTGATAATCTGGACAA 58.984 43.478 0.00 0.00 0.00 3.18
500 501 2.236146 GTTGGGGATGGGGAAAACATTC 59.764 50.000 0.00 0.00 0.00 2.67
504 505 3.026694 GGGATGGGGAAAACATTCTCTG 58.973 50.000 0.00 0.00 0.00 3.35
519 520 1.202452 TCTCTGTGTGTGTGTGCTCTG 60.202 52.381 0.00 0.00 0.00 3.35
520 521 0.811219 TCTGTGTGTGTGTGCTCTGC 60.811 55.000 0.00 0.00 0.00 4.26
521 522 0.812811 CTGTGTGTGTGTGCTCTGCT 60.813 55.000 0.00 0.00 0.00 4.24
522 523 1.091197 TGTGTGTGTGTGCTCTGCTG 61.091 55.000 0.00 0.00 0.00 4.41
523 524 2.182181 TGTGTGTGTGCTCTGCTGC 61.182 57.895 0.00 0.00 0.00 5.25
524 525 2.968697 TGTGTGTGCTCTGCTGCG 60.969 61.111 0.00 0.00 35.36 5.18
525 526 4.380628 GTGTGTGCTCTGCTGCGC 62.381 66.667 0.00 0.00 43.07 6.09
526 527 4.614112 TGTGTGCTCTGCTGCGCT 62.614 61.111 9.73 0.00 43.17 5.92
527 528 4.086178 GTGTGCTCTGCTGCGCTG 62.086 66.667 9.73 10.04 43.17 5.18
532 533 3.800863 CTCTGCTGCGCTGCCAAG 61.801 66.667 32.35 24.38 0.00 3.61
533 534 4.318949 TCTGCTGCGCTGCCAAGA 62.319 61.111 32.35 26.04 0.00 3.02
534 535 4.099170 CTGCTGCGCTGCCAAGAC 62.099 66.667 32.35 8.44 0.00 3.01
540 541 4.379243 CGCTGCCAAGACCCGAGT 62.379 66.667 0.00 0.00 0.00 4.18
541 542 2.435059 GCTGCCAAGACCCGAGTC 60.435 66.667 0.00 0.00 43.89 3.36
542 543 3.059982 CTGCCAAGACCCGAGTCA 58.940 61.111 0.00 0.00 46.15 3.41
543 544 1.079543 CTGCCAAGACCCGAGTCAG 60.080 63.158 0.00 0.00 46.15 3.51
544 545 2.435059 GCCAAGACCCGAGTCAGC 60.435 66.667 0.00 0.00 46.15 4.26
545 546 3.059982 CCAAGACCCGAGTCAGCA 58.940 61.111 0.00 0.00 46.15 4.41
574 575 2.693591 CAGCCATGCTTGATCCATTTCT 59.306 45.455 0.22 0.00 36.40 2.52
651 652 1.528129 GAGCTGGGAAGAGTGGTTTG 58.472 55.000 0.00 0.00 0.00 2.93
680 681 9.811995 TTGCACTTTATTCGTACTAGTATCAAT 57.188 29.630 5.75 9.63 0.00 2.57
692 693 9.222916 CGTACTAGTATCAATGTAGAACTTGTG 57.777 37.037 5.75 0.00 30.70 3.33
695 696 9.424319 ACTAGTATCAATGTAGAACTTGTGTTG 57.576 33.333 0.00 0.00 36.39 3.33
696 697 7.672983 AGTATCAATGTAGAACTTGTGTTGG 57.327 36.000 0.00 0.00 36.39 3.77
697 698 7.450074 AGTATCAATGTAGAACTTGTGTTGGA 58.550 34.615 0.00 0.00 36.39 3.53
698 699 7.936847 AGTATCAATGTAGAACTTGTGTTGGAA 59.063 33.333 0.00 0.00 36.39 3.53
699 700 6.371809 TCAATGTAGAACTTGTGTTGGAAC 57.628 37.500 0.00 0.00 36.39 3.62
700 701 6.119536 TCAATGTAGAACTTGTGTTGGAACT 58.880 36.000 0.00 0.00 36.39 3.01
701 702 6.601613 TCAATGTAGAACTTGTGTTGGAACTT 59.398 34.615 0.00 0.00 36.39 2.66
702 703 5.811399 TGTAGAACTTGTGTTGGAACTTG 57.189 39.130 0.00 0.00 36.39 3.16
703 704 5.250200 TGTAGAACTTGTGTTGGAACTTGT 58.750 37.500 0.00 0.00 36.39 3.16
760 761 7.865385 GCACAAGTATTTTCACCTTGTTAATCA 59.135 33.333 1.76 0.00 44.68 2.57
1524 1541 3.118592 AGGTTGCAGAAGCCTACTATGAC 60.119 47.826 0.00 0.00 41.13 3.06
1717 1734 2.280186 CAATACGCCGCCTCTCCC 60.280 66.667 0.00 0.00 0.00 4.30
1730 1747 2.262774 CTCTCCCTCCATGGTGGTGC 62.263 65.000 27.14 0.00 39.03 5.01
1736 1753 2.438975 CCATGGTGGTGCGCAGAT 60.439 61.111 12.22 0.00 31.35 2.90
1762 1779 4.324874 CCAAGGAATCTCCATCCAAGAAGT 60.325 45.833 0.00 0.00 39.61 3.01
1776 1793 4.844085 TCCAAGAAGTACTCTCCATCCAAA 59.156 41.667 0.00 0.00 31.02 3.28
1778 1795 5.645497 CCAAGAAGTACTCTCCATCCAAAAG 59.355 44.000 0.00 0.00 31.02 2.27
1780 1797 6.043854 AGAAGTACTCTCCATCCAAAAGAC 57.956 41.667 0.00 0.00 0.00 3.01
1873 1890 4.193826 TCACTGAGTATGTTTCAGCTCC 57.806 45.455 2.37 0.00 44.63 4.70
1926 3269 2.300437 GTTCACCCTGCTGAGAGTACTT 59.700 50.000 0.00 0.00 0.00 2.24
1947 3290 1.676967 CCTGGAAGACTGCAAGGGC 60.677 63.158 0.00 0.00 39.30 5.19
1968 3311 3.377172 GCGTAGAAAACAAGCATATGGGT 59.623 43.478 4.56 0.00 0.00 4.51
1969 3312 4.730613 GCGTAGAAAACAAGCATATGGGTG 60.731 45.833 4.56 0.00 0.00 4.61
1992 3335 3.711086 CATCTGTCGGATGTACCTTCTG 58.289 50.000 12.83 0.00 44.88 3.02
2049 3392 0.033504 TGCCTCCGAAAGTCTGTGAC 59.966 55.000 0.00 0.00 0.00 3.67
2284 3629 6.819146 CCAAGAGGTAGGTGAACTAGAAAATC 59.181 42.308 0.00 0.00 30.77 2.17
2707 6197 3.981516 ATCTCAGAGGGACCTGTGATA 57.018 47.619 17.31 11.57 43.77 2.15
2709 6199 3.366396 TCTCAGAGGGACCTGTGATAAC 58.634 50.000 17.31 0.00 43.77 1.89
2907 6398 1.902508 CAGCTAAAGGTGGAGAGTGGA 59.097 52.381 1.16 0.00 39.67 4.02
2948 6439 4.023450 CACAGTTGGAGTGAAGTACGACTA 60.023 45.833 0.00 0.00 39.30 2.59
2999 6506 6.203808 AGTTTGTTGTTACCCTTTCTGTTC 57.796 37.500 0.00 0.00 0.00 3.18
3009 6520 2.654863 CCTTTCTGTTCCTGTTGGTGT 58.345 47.619 0.00 0.00 34.23 4.16
3012 6523 4.423732 CTTTCTGTTCCTGTTGGTGTTTG 58.576 43.478 0.00 0.00 34.23 2.93
3024 6535 0.459411 GGTGTTTGTGGTGTGGTTGC 60.459 55.000 0.00 0.00 0.00 4.17
3031 6542 0.249031 GTGGTGTGGTTGCTTCTTGC 60.249 55.000 0.00 0.00 43.25 4.01
3032 6543 0.395586 TGGTGTGGTTGCTTCTTGCT 60.396 50.000 0.00 0.00 43.37 3.91
3040 6551 4.267690 GTGGTTGCTTCTTGCTTTGTAAAC 59.732 41.667 0.00 0.00 43.37 2.01
3041 6552 3.802139 GGTTGCTTCTTGCTTTGTAAACC 59.198 43.478 0.00 0.00 43.37 3.27
3042 6553 4.441495 GGTTGCTTCTTGCTTTGTAAACCT 60.441 41.667 0.00 0.00 43.37 3.50
3051 6562 3.181438 TGCTTTGTAAACCTTGGAGCCTA 60.181 43.478 0.00 0.00 0.00 3.93
3131 6642 7.093992 TGTGGTCTAGGAAAAACAAAAACAAG 58.906 34.615 0.00 0.00 0.00 3.16
3138 6649 4.568760 GGAAAAACAAAAACAAGCGATCCA 59.431 37.500 0.00 0.00 0.00 3.41
3147 6658 1.555075 ACAAGCGATCCATGTACCAGT 59.445 47.619 0.00 0.00 0.00 4.00
3148 6659 2.764010 ACAAGCGATCCATGTACCAGTA 59.236 45.455 0.00 0.00 0.00 2.74
3173 6684 6.923012 TGCATTATAACTGCATGTTCTTGTT 58.077 32.000 14.61 0.00 44.30 2.83
3175 6686 6.473455 GCATTATAACTGCATGTTCTTGTTCC 59.527 38.462 12.27 0.00 39.89 3.62
3176 6687 6.509418 TTATAACTGCATGTTCTTGTTCCC 57.491 37.500 5.04 0.00 39.89 3.97
3177 6688 2.363306 ACTGCATGTTCTTGTTCCCA 57.637 45.000 0.00 0.00 0.00 4.37
3181 6692 3.295093 TGCATGTTCTTGTTCCCAGAAA 58.705 40.909 0.00 0.00 0.00 2.52
3183 6694 3.569701 GCATGTTCTTGTTCCCAGAAAGA 59.430 43.478 0.00 0.00 0.00 2.52
3184 6695 4.037923 GCATGTTCTTGTTCCCAGAAAGAA 59.962 41.667 0.00 0.00 37.54 2.52
3185 6696 5.766222 CATGTTCTTGTTCCCAGAAAGAAG 58.234 41.667 0.00 0.00 39.81 2.85
3186 6697 4.207165 TGTTCTTGTTCCCAGAAAGAAGG 58.793 43.478 0.00 0.00 39.81 3.46
3189 6700 5.640158 TCTTGTTCCCAGAAAGAAGGTTA 57.360 39.130 0.00 0.00 32.08 2.85
3190 6701 6.200878 TCTTGTTCCCAGAAAGAAGGTTAT 57.799 37.500 0.00 0.00 32.08 1.89
3191 6702 6.003950 TCTTGTTCCCAGAAAGAAGGTTATG 58.996 40.000 0.00 0.00 32.08 1.90
3192 6703 5.319043 TGTTCCCAGAAAGAAGGTTATGT 57.681 39.130 0.00 0.00 0.00 2.29
3193 6704 5.701224 TGTTCCCAGAAAGAAGGTTATGTT 58.299 37.500 0.00 0.00 0.00 2.71
3194 6705 6.133356 TGTTCCCAGAAAGAAGGTTATGTTT 58.867 36.000 0.00 0.00 0.00 2.83
3195 6706 6.609616 TGTTCCCAGAAAGAAGGTTATGTTTT 59.390 34.615 0.00 0.00 0.00 2.43
3196 6707 7.125053 TGTTCCCAGAAAGAAGGTTATGTTTTT 59.875 33.333 0.00 0.00 0.00 1.94
3216 6727 4.889832 TTTTGCATTTCAATTTTGGCGT 57.110 31.818 0.00 0.00 34.12 5.68
3217 6728 4.465040 TTTGCATTTCAATTTTGGCGTC 57.535 36.364 0.00 0.00 34.12 5.19
3218 6729 2.057316 TGCATTTCAATTTTGGCGTCG 58.943 42.857 0.00 0.00 0.00 5.12
3220 6731 3.238441 GCATTTCAATTTTGGCGTCGTA 58.762 40.909 0.00 0.00 0.00 3.43
3221 6732 3.857093 GCATTTCAATTTTGGCGTCGTAT 59.143 39.130 0.00 0.00 0.00 3.06
3222 6733 5.031578 GCATTTCAATTTTGGCGTCGTATA 58.968 37.500 0.00 0.00 0.00 1.47
3223 6734 5.052633 GCATTTCAATTTTGGCGTCGTATAC 60.053 40.000 0.00 0.00 0.00 1.47
3224 6735 5.608676 TTTCAATTTTGGCGTCGTATACA 57.391 34.783 3.32 0.00 0.00 2.29
3227 6738 6.184580 TCAATTTTGGCGTCGTATACATTT 57.815 33.333 3.32 0.00 0.00 2.32
3228 6739 6.252281 TCAATTTTGGCGTCGTATACATTTC 58.748 36.000 3.32 0.00 0.00 2.17
3229 6740 5.804692 ATTTTGGCGTCGTATACATTTCA 57.195 34.783 3.32 0.00 0.00 2.69
3230 6741 5.608676 TTTTGGCGTCGTATACATTTCAA 57.391 34.783 3.32 0.00 0.00 2.69
3231 6742 5.804692 TTTGGCGTCGTATACATTTCAAT 57.195 34.783 3.32 0.00 0.00 2.57
3233 6744 5.150342 TGGCGTCGTATACATTTCAATTG 57.850 39.130 3.32 0.00 0.00 2.32
3234 6745 4.870991 TGGCGTCGTATACATTTCAATTGA 59.129 37.500 3.38 3.38 0.00 2.57
3235 6746 5.006261 TGGCGTCGTATACATTTCAATTGAG 59.994 40.000 8.41 0.00 0.00 3.02
3236 6747 5.432157 GCGTCGTATACATTTCAATTGAGG 58.568 41.667 8.41 5.38 0.00 3.86
3237 6748 5.432157 CGTCGTATACATTTCAATTGAGGC 58.568 41.667 8.41 0.00 0.00 4.70
3239 6750 4.509970 TCGTATACATTTCAATTGAGGCGG 59.490 41.667 8.41 2.95 0.00 6.13
3240 6751 3.715628 ATACATTTCAATTGAGGCGGC 57.284 42.857 8.41 0.00 0.00 6.53
3241 6752 0.171007 ACATTTCAATTGAGGCGGCG 59.829 50.000 8.41 0.51 0.00 6.46
3243 6754 0.451783 ATTTCAATTGAGGCGGCGAC 59.548 50.000 12.98 8.50 0.00 5.19
3245 6756 0.886938 TTCAATTGAGGCGGCGACAA 60.887 50.000 18.30 21.36 0.00 3.18
3246 6757 0.886938 TCAATTGAGGCGGCGACAAA 60.887 50.000 18.30 9.85 0.00 2.83
3271 6782 0.324943 TAGTCAGCCAGCCAACTTCC 59.675 55.000 0.49 0.00 0.00 3.46
3280 6791 2.109126 GCCAACTTCCCTGCTAGCG 61.109 63.158 10.77 4.90 0.00 4.26
3283 6794 1.363744 CAACTTCCCTGCTAGCGAAG 58.636 55.000 22.02 22.02 39.13 3.79
3301 6812 4.613944 CGAAGTCGCCAAATACAGGTATA 58.386 43.478 0.00 0.00 0.00 1.47
3311 6822 5.833131 CCAAATACAGGTATATGTGCCCTTT 59.167 40.000 0.00 0.00 34.56 3.11
3348 6859 1.076332 CGTGGGTGAGAATTCGAACC 58.924 55.000 19.06 19.06 0.00 3.62
3350 6861 2.076863 GTGGGTGAGAATTCGAACCTG 58.923 52.381 23.59 0.00 33.02 4.00
3351 6862 1.087501 GGGTGAGAATTCGAACCTGC 58.912 55.000 23.59 10.87 33.02 4.85
3359 6870 1.683943 ATTCGAACCTGCATCCATGG 58.316 50.000 4.97 4.97 0.00 3.66
3361 6872 0.107703 TCGAACCTGCATCCATGGAC 60.108 55.000 18.99 5.93 0.00 4.02
3383 6894 2.092968 TCGACCTAGCATTGCCATCTTT 60.093 45.455 4.70 0.00 0.00 2.52
3384 6895 3.133901 TCGACCTAGCATTGCCATCTTTA 59.866 43.478 4.70 0.00 0.00 1.85
3385 6896 3.876914 CGACCTAGCATTGCCATCTTTAA 59.123 43.478 4.70 0.00 0.00 1.52
3386 6897 4.024556 CGACCTAGCATTGCCATCTTTAAG 60.025 45.833 4.70 0.00 0.00 1.85
3387 6898 4.210331 ACCTAGCATTGCCATCTTTAAGG 58.790 43.478 4.70 2.79 0.00 2.69
3395 6906 1.401905 GCCATCTTTAAGGCCTGTTCG 59.598 52.381 5.69 0.00 45.18 3.95
3396 6907 2.017049 CCATCTTTAAGGCCTGTTCGG 58.983 52.381 5.69 0.00 0.00 4.30
3397 6908 2.355716 CCATCTTTAAGGCCTGTTCGGA 60.356 50.000 5.69 1.67 33.16 4.55
3398 6909 2.762535 TCTTTAAGGCCTGTTCGGAG 57.237 50.000 5.69 0.00 33.16 4.63
3399 6910 1.278127 TCTTTAAGGCCTGTTCGGAGG 59.722 52.381 5.69 0.00 36.03 4.30
3400 6911 0.326927 TTTAAGGCCTGTTCGGAGGG 59.673 55.000 5.69 0.00 33.17 4.30
3401 6912 1.559065 TTAAGGCCTGTTCGGAGGGG 61.559 60.000 5.69 0.00 33.17 4.79
3404 6915 4.475135 GCCTGTTCGGAGGGGCTC 62.475 72.222 9.59 0.00 41.20 4.70
3405 6916 3.787001 CCTGTTCGGAGGGGCTCC 61.787 72.222 0.00 0.00 46.44 4.70
3413 6924 2.607750 GAGGGGCTCCACTCCACA 60.608 66.667 4.79 0.00 34.83 4.17
3414 6925 2.121963 AGGGGCTCCACTCCACAA 60.122 61.111 4.79 0.00 34.83 3.33
3415 6926 2.034221 GGGGCTCCACTCCACAAC 59.966 66.667 0.00 0.00 0.00 3.32
3416 6927 2.529744 GGGGCTCCACTCCACAACT 61.530 63.158 0.00 0.00 0.00 3.16
3417 6928 1.003233 GGGCTCCACTCCACAACTC 60.003 63.158 0.00 0.00 0.00 3.01
3418 6929 1.003233 GGCTCCACTCCACAACTCC 60.003 63.158 0.00 0.00 0.00 3.85
3419 6930 1.754745 GCTCCACTCCACAACTCCA 59.245 57.895 0.00 0.00 0.00 3.86
3420 6931 0.603975 GCTCCACTCCACAACTCCAC 60.604 60.000 0.00 0.00 0.00 4.02
3421 6932 1.051812 CTCCACTCCACAACTCCACT 58.948 55.000 0.00 0.00 0.00 4.00
3422 6933 1.001406 CTCCACTCCACAACTCCACTC 59.999 57.143 0.00 0.00 0.00 3.51
3423 6934 0.319900 CCACTCCACAACTCCACTCG 60.320 60.000 0.00 0.00 0.00 4.18
3424 6935 0.946221 CACTCCACAACTCCACTCGC 60.946 60.000 0.00 0.00 0.00 5.03
3425 6936 1.734477 CTCCACAACTCCACTCGCG 60.734 63.158 0.00 0.00 0.00 5.87
3426 6937 2.738521 CCACAACTCCACTCGCGG 60.739 66.667 6.13 0.00 0.00 6.46
3427 6938 2.338620 CACAACTCCACTCGCGGA 59.661 61.111 6.13 0.00 0.00 5.54
3449 6960 2.356665 TGGTGGAGCAGCAGTTAAAA 57.643 45.000 0.00 0.00 36.93 1.52
3450 6961 2.660572 TGGTGGAGCAGCAGTTAAAAA 58.339 42.857 0.00 0.00 36.93 1.94
3467 6978 3.385193 AAAAATGCGGAGTTGGGAAAG 57.615 42.857 0.00 0.00 0.00 2.62
3468 6979 2.286365 AAATGCGGAGTTGGGAAAGA 57.714 45.000 0.00 0.00 0.00 2.52
3469 6980 1.826385 AATGCGGAGTTGGGAAAGAG 58.174 50.000 0.00 0.00 0.00 2.85
3470 6981 0.035056 ATGCGGAGTTGGGAAAGAGG 60.035 55.000 0.00 0.00 0.00 3.69
3471 6982 1.375326 GCGGAGTTGGGAAAGAGGT 59.625 57.895 0.00 0.00 0.00 3.85
3472 6983 0.955919 GCGGAGTTGGGAAAGAGGTG 60.956 60.000 0.00 0.00 0.00 4.00
3473 6984 0.955919 CGGAGTTGGGAAAGAGGTGC 60.956 60.000 0.00 0.00 0.00 5.01
3474 6985 0.402121 GGAGTTGGGAAAGAGGTGCT 59.598 55.000 0.00 0.00 0.00 4.40
3475 6986 1.611936 GGAGTTGGGAAAGAGGTGCTC 60.612 57.143 0.00 0.00 0.00 4.26
3476 6987 0.402121 AGTTGGGAAAGAGGTGCTCC 59.598 55.000 0.00 0.00 0.00 4.70
3477 6988 0.955919 GTTGGGAAAGAGGTGCTCCG 60.956 60.000 0.00 0.00 39.05 4.63
3478 6989 2.436824 GGGAAAGAGGTGCTCCGC 60.437 66.667 0.00 0.00 39.05 5.54
3479 6990 2.347490 GGAAAGAGGTGCTCCGCA 59.653 61.111 11.23 0.00 39.05 5.69
3480 6991 1.743252 GGAAAGAGGTGCTCCGCAG 60.743 63.158 11.23 0.00 40.08 5.18
3489 7000 3.456365 GCTCCGCAGCTCCTCAGA 61.456 66.667 0.00 0.00 43.09 3.27
3490 7001 2.795110 GCTCCGCAGCTCCTCAGAT 61.795 63.158 0.00 0.00 43.09 2.90
3491 7002 1.821936 CTCCGCAGCTCCTCAGATT 59.178 57.895 0.00 0.00 0.00 2.40
3492 7003 0.177604 CTCCGCAGCTCCTCAGATTT 59.822 55.000 0.00 0.00 0.00 2.17
3493 7004 0.176680 TCCGCAGCTCCTCAGATTTC 59.823 55.000 0.00 0.00 0.00 2.17
3494 7005 0.813210 CCGCAGCTCCTCAGATTTCC 60.813 60.000 0.00 0.00 0.00 3.13
3495 7006 0.177604 CGCAGCTCCTCAGATTTCCT 59.822 55.000 0.00 0.00 0.00 3.36
3496 7007 1.410517 CGCAGCTCCTCAGATTTCCTA 59.589 52.381 0.00 0.00 0.00 2.94
3497 7008 2.545532 CGCAGCTCCTCAGATTTCCTAG 60.546 54.545 0.00 0.00 0.00 3.02
3498 7009 2.697751 GCAGCTCCTCAGATTTCCTAGA 59.302 50.000 0.00 0.00 0.00 2.43
3499 7010 3.243839 GCAGCTCCTCAGATTTCCTAGAG 60.244 52.174 0.00 0.00 0.00 2.43
3500 7011 2.965147 AGCTCCTCAGATTTCCTAGAGC 59.035 50.000 0.00 0.00 39.81 4.09
3501 7012 2.037121 GCTCCTCAGATTTCCTAGAGCC 59.963 54.545 0.00 0.00 36.50 4.70
3502 7013 2.295909 CTCCTCAGATTTCCTAGAGCCG 59.704 54.545 0.00 0.00 0.00 5.52
3503 7014 1.342819 CCTCAGATTTCCTAGAGCCGG 59.657 57.143 0.00 0.00 0.00 6.13
3504 7015 2.311463 CTCAGATTTCCTAGAGCCGGA 58.689 52.381 5.05 0.00 0.00 5.14
3505 7016 2.295909 CTCAGATTTCCTAGAGCCGGAG 59.704 54.545 5.05 0.00 0.00 4.63
3519 7030 4.432859 GGAGGATTACCGAACGGC 57.567 61.111 13.32 0.00 41.83 5.68
3520 7031 1.821258 GGAGGATTACCGAACGGCT 59.179 57.895 13.32 1.70 41.83 5.52
3521 7032 0.249363 GGAGGATTACCGAACGGCTC 60.249 60.000 13.32 10.49 41.83 4.70
3522 7033 0.249363 GAGGATTACCGAACGGCTCC 60.249 60.000 13.32 15.41 41.83 4.70
3523 7034 0.686769 AGGATTACCGAACGGCTCCT 60.687 55.000 19.57 19.57 41.83 3.69
3547 7058 3.821033 AGTTGTTGGCTTCGATTTTAGCT 59.179 39.130 6.77 0.00 37.54 3.32
3573 7084 7.718272 ACATGAAATTGTTCTGTTCATTTGG 57.282 32.000 0.00 0.00 39.40 3.28
3575 7086 7.225145 ACATGAAATTGTTCTGTTCATTTGGTG 59.775 33.333 0.00 0.00 39.40 4.17
3577 7088 6.534436 TGAAATTGTTCTGTTCATTTGGTGTG 59.466 34.615 0.00 0.00 34.60 3.82
3598 7109 3.119173 TGGTGTTGCTTCCACAGAAAAAG 60.119 43.478 0.00 0.00 34.46 2.27
3613 7124 6.310956 CACAGAAAAAGCAAAATGTCAAGTGA 59.689 34.615 0.00 0.00 0.00 3.41
3614 7125 7.010738 CACAGAAAAAGCAAAATGTCAAGTGAT 59.989 33.333 0.00 0.00 0.00 3.06
3615 7126 7.550196 ACAGAAAAAGCAAAATGTCAAGTGATT 59.450 29.630 0.00 0.00 0.00 2.57
3616 7127 7.849026 CAGAAAAAGCAAAATGTCAAGTGATTG 59.151 33.333 0.00 0.00 0.00 2.67
3617 7128 5.662211 AAAGCAAAATGTCAAGTGATTGC 57.338 34.783 8.60 8.60 42.48 3.56
3620 7131 4.523943 AGCAAAATGTCAAGTGATTGCCTA 59.476 37.500 11.75 0.00 43.00 3.93
3621 7132 5.186409 AGCAAAATGTCAAGTGATTGCCTAT 59.814 36.000 11.75 0.00 43.00 2.57
3622 7133 6.377996 AGCAAAATGTCAAGTGATTGCCTATA 59.622 34.615 11.75 0.00 43.00 1.31
3652 7176 2.596346 TGTGCCCAACAGTTCAATGAT 58.404 42.857 0.00 0.00 33.78 2.45
3690 7214 1.613520 GCTACTGGGGTTGGGAACTTC 60.614 57.143 0.00 0.00 0.00 3.01
3732 7256 5.023533 TCTTACATGGCTAGCTACCTTTG 57.976 43.478 15.72 6.26 0.00 2.77
3733 7257 4.714802 TCTTACATGGCTAGCTACCTTTGA 59.285 41.667 15.72 2.92 0.00 2.69
3734 7258 3.268023 ACATGGCTAGCTACCTTTGAC 57.732 47.619 15.72 0.00 0.00 3.18
3735 7259 2.571653 ACATGGCTAGCTACCTTTGACA 59.428 45.455 15.72 0.44 0.00 3.58
3736 7260 3.201290 CATGGCTAGCTACCTTTGACAG 58.799 50.000 15.72 0.00 0.00 3.51
3737 7261 2.536066 TGGCTAGCTACCTTTGACAGA 58.464 47.619 15.72 0.00 0.00 3.41
3738 7262 3.107601 TGGCTAGCTACCTTTGACAGAT 58.892 45.455 15.72 0.00 0.00 2.90
3766 7294 6.480320 GTCCCTGCATCTTGTTAGTAGTATTG 59.520 42.308 0.00 0.00 0.00 1.90
3769 7297 7.210174 CCTGCATCTTGTTAGTAGTATTGCTA 58.790 38.462 0.00 0.00 0.00 3.49
3771 7299 9.265901 CTGCATCTTGTTAGTAGTATTGCTAAT 57.734 33.333 0.00 0.00 34.64 1.73
3772 7300 9.045223 TGCATCTTGTTAGTAGTATTGCTAATG 57.955 33.333 0.00 0.00 34.64 1.90
3777 7305 6.053005 TGTTAGTAGTATTGCTAATGGTGGC 58.947 40.000 0.00 0.00 34.64 5.01
3794 7322 5.276440 TGGTGGCATTATTTATCCCTGTTT 58.724 37.500 0.00 0.00 0.00 2.83
3805 7333 2.214376 TCCCTGTTTATTGGCCACAG 57.786 50.000 3.88 9.42 38.14 3.66
3821 7349 4.564821 GGCCACAGATTTTACAGGTCACTA 60.565 45.833 0.00 0.00 0.00 2.74
3895 7423 5.416271 AGGATAATTCAACACGTGTAGGT 57.584 39.130 23.69 3.00 0.00 3.08
3929 7457 6.818142 ACCTGTCTTTTTGTTTTCTTTGATGG 59.182 34.615 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.656095 CTCTAGCGCAGTAGCAAACAC 59.344 52.381 11.47 0.00 42.27 3.32
85 86 1.996292 CTCTAGCGCAGTAGCAAACA 58.004 50.000 11.47 0.00 42.27 2.83
86 87 0.647925 GCTCTAGCGCAGTAGCAAAC 59.352 55.000 19.10 0.00 42.27 2.93
87 88 3.050703 GCTCTAGCGCAGTAGCAAA 57.949 52.632 19.10 0.00 42.27 3.68
88 89 4.814900 GCTCTAGCGCAGTAGCAA 57.185 55.556 19.10 0.00 42.27 3.91
104 105 1.359459 CCCTAACTTGCGGTTCGAGC 61.359 60.000 0.00 0.00 39.17 5.03
139 140 3.521560 CCAGATCAAAACGGATCGAGAA 58.478 45.455 0.00 0.00 46.55 2.87
140 141 2.159099 CCCAGATCAAAACGGATCGAGA 60.159 50.000 0.00 0.00 46.55 4.04
141 142 2.205074 CCCAGATCAAAACGGATCGAG 58.795 52.381 0.00 0.00 46.55 4.04
142 143 1.742411 GCCCAGATCAAAACGGATCGA 60.742 52.381 0.00 0.00 46.55 3.59
143 144 0.657840 GCCCAGATCAAAACGGATCG 59.342 55.000 0.00 0.00 46.55 3.69
144 145 2.044123 AGCCCAGATCAAAACGGATC 57.956 50.000 0.00 0.00 43.21 3.36
145 146 2.514458 AAGCCCAGATCAAAACGGAT 57.486 45.000 0.00 0.00 0.00 4.18
399 400 3.177228 AGATTCACTACTCCACTTGCCT 58.823 45.455 0.00 0.00 0.00 4.75
400 401 3.196685 AGAGATTCACTACTCCACTTGCC 59.803 47.826 0.00 0.00 34.13 4.52
401 402 4.180057 CAGAGATTCACTACTCCACTTGC 58.820 47.826 0.00 0.00 34.13 4.01
402 403 4.081752 AGCAGAGATTCACTACTCCACTTG 60.082 45.833 0.00 0.00 34.13 3.16
403 404 4.093011 AGCAGAGATTCACTACTCCACTT 58.907 43.478 0.00 0.00 34.13 3.16
433 434 7.386059 AATTTGGTTTGTCCAGATTATCAACC 58.614 34.615 0.00 0.00 45.38 3.77
472 473 2.052104 CCCATCCCCAACCGCTTTC 61.052 63.158 0.00 0.00 0.00 2.62
500 501 1.215244 CAGAGCACACACACACAGAG 58.785 55.000 0.00 0.00 0.00 3.35
504 505 1.645455 CAGCAGAGCACACACACAC 59.355 57.895 0.00 0.00 0.00 3.82
523 524 4.379243 ACTCGGGTCTTGGCAGCG 62.379 66.667 0.00 0.00 0.00 5.18
524 525 2.435059 GACTCGGGTCTTGGCAGC 60.435 66.667 8.58 0.00 39.24 5.25
525 526 1.079543 CTGACTCGGGTCTTGGCAG 60.080 63.158 17.97 1.33 42.54 4.85
526 527 3.059982 CTGACTCGGGTCTTGGCA 58.940 61.111 17.97 0.00 42.54 4.92
527 528 2.435059 GCTGACTCGGGTCTTGGC 60.435 66.667 17.97 14.11 42.54 4.52
528 529 1.079543 CTGCTGACTCGGGTCTTGG 60.080 63.158 17.97 8.04 42.54 3.61
529 530 1.739562 GCTGCTGACTCGGGTCTTG 60.740 63.158 17.97 10.64 42.54 3.02
530 531 1.758440 TTGCTGCTGACTCGGGTCTT 61.758 55.000 17.97 0.00 42.54 3.01
531 532 2.210013 TTGCTGCTGACTCGGGTCT 61.210 57.895 17.97 0.00 42.54 3.85
532 533 2.029844 GTTGCTGCTGACTCGGGTC 61.030 63.158 8.99 8.99 42.42 4.46
533 534 2.031163 GTTGCTGCTGACTCGGGT 59.969 61.111 0.00 0.00 0.00 5.28
534 535 3.114616 CGTTGCTGCTGACTCGGG 61.115 66.667 0.00 0.00 0.00 5.14
535 536 3.782244 GCGTTGCTGCTGACTCGG 61.782 66.667 0.00 0.00 0.00 4.63
536 537 3.782244 GGCGTTGCTGCTGACTCG 61.782 66.667 0.00 0.10 34.52 4.18
537 538 2.666190 TGGCGTTGCTGCTGACTC 60.666 61.111 0.00 0.00 34.52 3.36
538 539 2.667536 CTGGCGTTGCTGCTGACT 60.668 61.111 0.00 0.00 34.52 3.41
539 540 4.395583 GCTGGCGTTGCTGCTGAC 62.396 66.667 0.00 0.00 34.52 3.51
543 544 4.789075 CATGGCTGGCGTTGCTGC 62.789 66.667 0.00 0.00 0.00 5.25
544 545 4.789075 GCATGGCTGGCGTTGCTG 62.789 66.667 17.73 3.34 32.41 4.41
574 575 2.402182 TACAGTGGTAGTTGGGACCA 57.598 50.000 0.00 0.00 44.86 4.02
619 620 2.771943 TCCCAGCTCGGAAGTTTCATAT 59.228 45.455 0.00 0.00 36.56 1.78
680 681 5.250200 ACAAGTTCCAACACAAGTTCTACA 58.750 37.500 0.00 0.00 35.28 2.74
692 693 5.917541 TCGTGATAAAGACAAGTTCCAAC 57.082 39.130 0.00 0.00 0.00 3.77
693 694 6.928979 TTTCGTGATAAAGACAAGTTCCAA 57.071 33.333 0.00 0.00 0.00 3.53
694 695 7.359595 CAATTTCGTGATAAAGACAAGTTCCA 58.640 34.615 0.00 0.00 0.00 3.53
695 696 6.305638 GCAATTTCGTGATAAAGACAAGTTCC 59.694 38.462 0.00 0.00 0.00 3.62
696 697 6.855914 TGCAATTTCGTGATAAAGACAAGTTC 59.144 34.615 0.00 0.00 0.00 3.01
697 698 6.734137 TGCAATTTCGTGATAAAGACAAGTT 58.266 32.000 0.00 0.00 0.00 2.66
698 699 6.312399 TGCAATTTCGTGATAAAGACAAGT 57.688 33.333 0.00 0.00 0.00 3.16
699 700 7.621832 TTTGCAATTTCGTGATAAAGACAAG 57.378 32.000 0.00 0.00 0.00 3.16
700 701 7.489435 TGTTTTGCAATTTCGTGATAAAGACAA 59.511 29.630 0.00 0.00 0.00 3.18
701 702 6.975197 TGTTTTGCAATTTCGTGATAAAGACA 59.025 30.769 0.00 0.00 0.00 3.41
702 703 7.167468 ACTGTTTTGCAATTTCGTGATAAAGAC 59.833 33.333 0.00 0.00 0.00 3.01
703 704 7.167302 CACTGTTTTGCAATTTCGTGATAAAGA 59.833 33.333 0.00 0.00 0.00 2.52
760 761 8.637986 TGACTAGTATTTCCACAAGCAAATTTT 58.362 29.630 0.00 0.00 0.00 1.82
968 969 1.845809 GAGGTTGTTGTCTGGCAGCG 61.846 60.000 10.34 0.00 0.00 5.18
1041 1048 4.631377 TCTCCACAAATTTCACTAGCATCG 59.369 41.667 0.00 0.00 0.00 3.84
1524 1541 3.082579 GCCCCTACTCACCAGCTCG 62.083 68.421 0.00 0.00 0.00 5.03
1717 1734 2.881539 ATCTGCGCACCACCATGGAG 62.882 60.000 21.47 11.19 40.96 3.86
1730 1747 0.465097 AGATTCCTTGGGCATCTGCG 60.465 55.000 0.00 0.00 43.26 5.18
1736 1753 0.552848 GGATGGAGATTCCTTGGGCA 59.447 55.000 0.00 0.00 37.46 5.36
1762 1779 3.526899 TGGGTCTTTTGGATGGAGAGTA 58.473 45.455 0.00 0.00 0.00 2.59
1776 1793 4.111577 TGGATGTAGATTCCTTGGGTCTT 58.888 43.478 0.00 0.00 34.17 3.01
1778 1795 4.164221 TCTTGGATGTAGATTCCTTGGGTC 59.836 45.833 0.00 0.00 34.17 4.46
1780 1797 4.778213 TCTTGGATGTAGATTCCTTGGG 57.222 45.455 0.00 0.00 34.17 4.12
1873 1890 1.321474 TCAAGCAGCTTGTTCCCTTG 58.679 50.000 30.16 7.53 41.66 3.61
1911 3254 2.094286 CAGGTCAAGTACTCTCAGCAGG 60.094 54.545 0.00 0.00 0.00 4.85
1926 3269 0.397941 CCTTGCAGTCTTCCAGGTCA 59.602 55.000 0.00 0.00 0.00 4.02
1947 3290 4.634004 TCACCCATATGCTTGTTTTCTACG 59.366 41.667 0.00 0.00 0.00 3.51
1992 3335 3.108376 ACCTCTCAGGGACAAATACCTC 58.892 50.000 0.00 0.00 36.81 3.85
2049 3392 0.524862 GTGTCTGCAAATGCTCCAGG 59.475 55.000 6.97 0.00 42.66 4.45
2227 3572 4.726583 ACAGCATCATCTTCCAGCAATAT 58.273 39.130 0.00 0.00 0.00 1.28
2284 3629 5.229469 CGACGTAGATACTTAACCTTTGCAG 59.771 44.000 0.00 0.00 0.00 4.41
2664 6154 0.463654 TGAGCGCTGGAAAGTTGTGT 60.464 50.000 18.48 0.00 0.00 3.72
2707 6197 2.301870 TGTAGACTCTGGGCATTTCGTT 59.698 45.455 0.00 0.00 0.00 3.85
2709 6199 2.672961 TGTAGACTCTGGGCATTTCG 57.327 50.000 0.00 0.00 0.00 3.46
2907 6398 0.482446 TGAACTGATTGGGGTGCCTT 59.518 50.000 0.00 0.00 0.00 4.35
2948 6439 1.510480 GCAAGCAGAGCGACAAGGTT 61.510 55.000 0.00 0.00 0.00 3.50
2999 6506 1.135141 CACACCACAAACACCAACAGG 60.135 52.381 0.00 0.00 0.00 4.00
3009 6520 1.846007 AGAAGCAACCACACCACAAA 58.154 45.000 0.00 0.00 0.00 2.83
3012 6523 0.249031 GCAAGAAGCAACCACACCAC 60.249 55.000 0.00 0.00 44.79 4.16
3024 6535 5.514274 TCCAAGGTTTACAAAGCAAGAAG 57.486 39.130 6.66 0.00 38.79 2.85
3031 6542 4.394729 TGTAGGCTCCAAGGTTTACAAAG 58.605 43.478 0.00 0.00 0.00 2.77
3032 6543 4.394729 CTGTAGGCTCCAAGGTTTACAAA 58.605 43.478 0.00 0.00 0.00 2.83
3040 6551 0.326264 AACTGCTGTAGGCTCCAAGG 59.674 55.000 0.00 0.00 42.39 3.61
3041 6552 2.191128 AAACTGCTGTAGGCTCCAAG 57.809 50.000 0.00 0.00 42.39 3.61
3042 6553 3.674997 CTTAAACTGCTGTAGGCTCCAA 58.325 45.455 0.00 0.00 42.39 3.53
3051 6562 2.958355 ACCACAATGCTTAAACTGCTGT 59.042 40.909 0.00 0.00 0.00 4.40
3131 6642 2.069273 GCATACTGGTACATGGATCGC 58.931 52.381 0.00 0.00 38.20 4.58
3138 6649 7.672983 GCAGTTATAATGCATACTGGTACAT 57.327 36.000 22.63 0.00 43.31 2.29
3170 6681 5.319043 ACATAACCTTCTTTCTGGGAACA 57.681 39.130 0.00 0.00 39.59 3.18
3194 6705 5.240713 ACGCCAAAATTGAAATGCAAAAA 57.759 30.435 0.00 0.00 40.48 1.94
3195 6706 4.551603 CGACGCCAAAATTGAAATGCAAAA 60.552 37.500 0.00 0.00 40.48 2.44
3196 6707 3.060003 CGACGCCAAAATTGAAATGCAAA 60.060 39.130 0.00 0.00 40.48 3.68
3197 6708 2.474359 CGACGCCAAAATTGAAATGCAA 59.526 40.909 0.00 0.00 41.53 4.08
3198 6709 2.057316 CGACGCCAAAATTGAAATGCA 58.943 42.857 0.00 0.00 0.00 3.96
3199 6710 2.058057 ACGACGCCAAAATTGAAATGC 58.942 42.857 0.00 0.00 0.00 3.56
3200 6711 6.024664 TGTATACGACGCCAAAATTGAAATG 58.975 36.000 0.00 0.00 0.00 2.32
3201 6712 6.184580 TGTATACGACGCCAAAATTGAAAT 57.815 33.333 0.00 0.00 0.00 2.17
3202 6713 5.608676 TGTATACGACGCCAAAATTGAAA 57.391 34.783 0.00 0.00 0.00 2.69
3203 6714 5.804692 ATGTATACGACGCCAAAATTGAA 57.195 34.783 0.00 0.00 0.00 2.69
3204 6715 5.804692 AATGTATACGACGCCAAAATTGA 57.195 34.783 0.00 0.00 0.00 2.57
3205 6716 6.024664 TGAAATGTATACGACGCCAAAATTG 58.975 36.000 0.00 0.00 0.00 2.32
3206 6717 6.184580 TGAAATGTATACGACGCCAAAATT 57.815 33.333 0.00 0.00 0.00 1.82
3208 6719 5.608676 TTGAAATGTATACGACGCCAAAA 57.391 34.783 0.00 0.00 0.00 2.44
3209 6720 5.804692 ATTGAAATGTATACGACGCCAAA 57.195 34.783 0.00 0.00 0.00 3.28
3210 6721 5.351740 TCAATTGAAATGTATACGACGCCAA 59.648 36.000 5.45 0.00 0.00 4.52
3211 6722 4.870991 TCAATTGAAATGTATACGACGCCA 59.129 37.500 5.45 0.00 0.00 5.69
3212 6723 5.398176 TCAATTGAAATGTATACGACGCC 57.602 39.130 5.45 0.00 0.00 5.68
3214 6725 5.432157 GCCTCAATTGAAATGTATACGACG 58.568 41.667 9.88 0.00 0.00 5.12
3216 6727 4.509970 CCGCCTCAATTGAAATGTATACGA 59.490 41.667 9.88 0.00 0.00 3.43
3217 6728 4.772434 CCGCCTCAATTGAAATGTATACG 58.228 43.478 9.88 4.72 0.00 3.06
3218 6729 4.537015 GCCGCCTCAATTGAAATGTATAC 58.463 43.478 9.88 0.00 0.00 1.47
3220 6731 2.033299 CGCCGCCTCAATTGAAATGTAT 59.967 45.455 9.88 0.00 0.00 2.29
3221 6732 1.400142 CGCCGCCTCAATTGAAATGTA 59.600 47.619 9.88 0.00 0.00 2.29
3222 6733 0.171007 CGCCGCCTCAATTGAAATGT 59.829 50.000 9.88 0.00 0.00 2.71
3223 6734 0.451383 TCGCCGCCTCAATTGAAATG 59.549 50.000 9.88 2.48 0.00 2.32
3224 6735 0.451783 GTCGCCGCCTCAATTGAAAT 59.548 50.000 9.88 0.00 0.00 2.17
3227 6738 0.886938 TTTGTCGCCGCCTCAATTGA 60.887 50.000 8.12 8.12 0.00 2.57
3228 6739 0.039617 TTTTGTCGCCGCCTCAATTG 60.040 50.000 0.00 0.00 0.00 2.32
3229 6740 0.671251 TTTTTGTCGCCGCCTCAATT 59.329 45.000 0.00 0.00 0.00 2.32
3230 6741 0.240945 CTTTTTGTCGCCGCCTCAAT 59.759 50.000 0.00 0.00 0.00 2.57
3231 6742 1.652012 CTTTTTGTCGCCGCCTCAA 59.348 52.632 0.00 0.00 0.00 3.02
3233 6744 1.792118 AACCTTTTTGTCGCCGCCTC 61.792 55.000 0.00 0.00 0.00 4.70
3234 6745 0.535553 TAACCTTTTTGTCGCCGCCT 60.536 50.000 0.00 0.00 0.00 5.52
3235 6746 0.109919 CTAACCTTTTTGTCGCCGCC 60.110 55.000 0.00 0.00 0.00 6.13
3236 6747 0.589708 ACTAACCTTTTTGTCGCCGC 59.410 50.000 0.00 0.00 0.00 6.53
3237 6748 1.868498 TGACTAACCTTTTTGTCGCCG 59.132 47.619 0.00 0.00 39.51 6.46
3239 6750 2.350484 GGCTGACTAACCTTTTTGTCGC 60.350 50.000 0.00 0.00 39.51 5.19
3240 6751 2.875933 TGGCTGACTAACCTTTTTGTCG 59.124 45.455 0.00 0.00 39.51 4.35
3241 6752 3.304726 GCTGGCTGACTAACCTTTTTGTC 60.305 47.826 0.00 0.00 37.81 3.18
3243 6754 2.029918 GGCTGGCTGACTAACCTTTTTG 60.030 50.000 0.00 0.00 0.00 2.44
3245 6756 1.144913 TGGCTGGCTGACTAACCTTTT 59.855 47.619 2.00 0.00 0.00 2.27
3246 6757 0.771127 TGGCTGGCTGACTAACCTTT 59.229 50.000 2.00 0.00 0.00 3.11
3280 6791 5.989777 ACATATACCTGTATTTGGCGACTTC 59.010 40.000 10.94 0.00 31.57 3.01
3283 6794 4.084013 GCACATATACCTGTATTTGGCGAC 60.084 45.833 10.94 0.00 31.57 5.19
3297 6808 4.438744 GCAACACTGAAAGGGCACATATAC 60.439 45.833 0.00 0.00 45.89 1.47
3301 6812 0.675633 GCAACACTGAAAGGGCACAT 59.324 50.000 0.00 0.00 45.89 3.21
3331 6842 1.610624 GCAGGTTCGAATTCTCACCCA 60.611 52.381 15.83 0.00 0.00 4.51
3333 6844 1.808411 TGCAGGTTCGAATTCTCACC 58.192 50.000 12.86 12.86 0.00 4.02
3343 6854 0.107508 AGTCCATGGATGCAGGTTCG 60.108 55.000 19.62 0.00 0.00 3.95
3348 6859 0.531532 GGTCGAGTCCATGGATGCAG 60.532 60.000 19.62 10.19 0.00 4.41
3350 6861 1.000283 CTAGGTCGAGTCCATGGATGC 60.000 57.143 19.62 12.05 0.00 3.91
3351 6862 1.000283 GCTAGGTCGAGTCCATGGATG 60.000 57.143 19.62 11.36 0.00 3.51
3359 6870 0.175760 TGGCAATGCTAGGTCGAGTC 59.824 55.000 4.82 0.00 0.00 3.36
3361 6872 1.069823 AGATGGCAATGCTAGGTCGAG 59.930 52.381 4.82 0.00 0.00 4.04
3383 6894 1.993391 CCCCTCCGAACAGGCCTTA 60.993 63.158 0.00 0.00 40.77 2.69
3384 6895 3.330720 CCCCTCCGAACAGGCCTT 61.331 66.667 0.00 0.00 40.77 4.35
3387 6898 4.475135 GAGCCCCTCCGAACAGGC 62.475 72.222 0.00 0.00 46.13 4.85
3388 6899 3.787001 GGAGCCCCTCCGAACAGG 61.787 72.222 0.00 0.00 41.08 4.00
3396 6907 2.224159 TTGTGGAGTGGAGCCCCTC 61.224 63.158 0.00 0.00 0.00 4.30
3397 6908 2.121963 TTGTGGAGTGGAGCCCCT 60.122 61.111 0.00 0.00 0.00 4.79
3398 6909 2.034221 GTTGTGGAGTGGAGCCCC 59.966 66.667 0.00 0.00 0.00 5.80
3399 6910 1.003233 GAGTTGTGGAGTGGAGCCC 60.003 63.158 0.00 0.00 0.00 5.19
3400 6911 1.003233 GGAGTTGTGGAGTGGAGCC 60.003 63.158 0.00 0.00 0.00 4.70
3401 6912 0.603975 GTGGAGTTGTGGAGTGGAGC 60.604 60.000 0.00 0.00 0.00 4.70
3402 6913 1.001406 GAGTGGAGTTGTGGAGTGGAG 59.999 57.143 0.00 0.00 0.00 3.86
3403 6914 1.048601 GAGTGGAGTTGTGGAGTGGA 58.951 55.000 0.00 0.00 0.00 4.02
3404 6915 0.319900 CGAGTGGAGTTGTGGAGTGG 60.320 60.000 0.00 0.00 0.00 4.00
3405 6916 0.946221 GCGAGTGGAGTTGTGGAGTG 60.946 60.000 0.00 0.00 0.00 3.51
3406 6917 1.367840 GCGAGTGGAGTTGTGGAGT 59.632 57.895 0.00 0.00 0.00 3.85
3407 6918 1.734477 CGCGAGTGGAGTTGTGGAG 60.734 63.158 0.00 0.00 0.00 3.86
3408 6919 2.338620 CGCGAGTGGAGTTGTGGA 59.661 61.111 0.00 0.00 0.00 4.02
3409 6920 2.738521 CCGCGAGTGGAGTTGTGG 60.739 66.667 8.23 0.00 0.00 4.17
3410 6921 2.338620 TCCGCGAGTGGAGTTGTG 59.661 61.111 8.23 0.00 33.05 3.33
3420 6931 4.504916 CTCCACCAGCTCCGCGAG 62.505 72.222 8.23 4.18 0.00 5.03
3429 6940 1.896220 TTTAACTGCTGCTCCACCAG 58.104 50.000 0.00 0.00 35.93 4.00
3430 6941 2.356665 TTTTAACTGCTGCTCCACCA 57.643 45.000 0.00 0.00 0.00 4.17
3447 6958 2.962421 TCTTTCCCAACTCCGCATTTTT 59.038 40.909 0.00 0.00 0.00 1.94
3448 6959 2.558359 CTCTTTCCCAACTCCGCATTTT 59.442 45.455 0.00 0.00 0.00 1.82
3449 6960 2.162681 CTCTTTCCCAACTCCGCATTT 58.837 47.619 0.00 0.00 0.00 2.32
3450 6961 1.614317 CCTCTTTCCCAACTCCGCATT 60.614 52.381 0.00 0.00 0.00 3.56
3451 6962 0.035056 CCTCTTTCCCAACTCCGCAT 60.035 55.000 0.00 0.00 0.00 4.73
3452 6963 1.374947 CCTCTTTCCCAACTCCGCA 59.625 57.895 0.00 0.00 0.00 5.69
3453 6964 0.955919 CACCTCTTTCCCAACTCCGC 60.956 60.000 0.00 0.00 0.00 5.54
3454 6965 0.955919 GCACCTCTTTCCCAACTCCG 60.956 60.000 0.00 0.00 0.00 4.63
3455 6966 0.402121 AGCACCTCTTTCCCAACTCC 59.598 55.000 0.00 0.00 0.00 3.85
3456 6967 1.611936 GGAGCACCTCTTTCCCAACTC 60.612 57.143 0.00 0.00 0.00 3.01
3457 6968 0.402121 GGAGCACCTCTTTCCCAACT 59.598 55.000 0.00 0.00 0.00 3.16
3458 6969 0.955919 CGGAGCACCTCTTTCCCAAC 60.956 60.000 0.00 0.00 0.00 3.77
3459 6970 1.374947 CGGAGCACCTCTTTCCCAA 59.625 57.895 0.00 0.00 0.00 4.12
3460 6971 3.068881 CGGAGCACCTCTTTCCCA 58.931 61.111 0.00 0.00 0.00 4.37
3473 6984 0.177604 AAATCTGAGGAGCTGCGGAG 59.822 55.000 0.00 0.00 0.00 4.63
3474 6985 0.176680 GAAATCTGAGGAGCTGCGGA 59.823 55.000 0.00 0.11 0.00 5.54
3475 6986 0.813210 GGAAATCTGAGGAGCTGCGG 60.813 60.000 0.00 0.00 0.00 5.69
3476 6987 0.177604 AGGAAATCTGAGGAGCTGCG 59.822 55.000 0.00 0.00 0.00 5.18
3477 6988 2.697751 TCTAGGAAATCTGAGGAGCTGC 59.302 50.000 0.00 0.00 0.00 5.25
3478 6989 3.243839 GCTCTAGGAAATCTGAGGAGCTG 60.244 52.174 0.00 0.00 38.99 4.24
3479 6990 2.965147 GCTCTAGGAAATCTGAGGAGCT 59.035 50.000 0.00 0.00 38.99 4.09
3480 6991 2.037121 GGCTCTAGGAAATCTGAGGAGC 59.963 54.545 0.00 0.00 40.08 4.70
3481 6992 2.295909 CGGCTCTAGGAAATCTGAGGAG 59.704 54.545 0.00 0.00 0.00 3.69
3482 6993 2.311463 CGGCTCTAGGAAATCTGAGGA 58.689 52.381 0.00 0.00 0.00 3.71
3483 6994 1.342819 CCGGCTCTAGGAAATCTGAGG 59.657 57.143 0.00 0.00 0.00 3.86
3484 6995 2.295909 CTCCGGCTCTAGGAAATCTGAG 59.704 54.545 0.00 0.00 37.32 3.35
3485 6996 2.311463 CTCCGGCTCTAGGAAATCTGA 58.689 52.381 0.00 0.00 37.32 3.27
3486 6997 1.342819 CCTCCGGCTCTAGGAAATCTG 59.657 57.143 0.43 0.00 37.32 2.90
3487 6998 1.218196 TCCTCCGGCTCTAGGAAATCT 59.782 52.381 7.15 0.00 38.97 2.40
3488 6999 1.705873 TCCTCCGGCTCTAGGAAATC 58.294 55.000 7.15 0.00 38.97 2.17
3489 7000 2.407340 ATCCTCCGGCTCTAGGAAAT 57.593 50.000 13.24 0.00 44.87 2.17
3490 7001 2.176247 AATCCTCCGGCTCTAGGAAA 57.824 50.000 13.24 0.00 44.87 3.13
3491 7002 2.595238 GTAATCCTCCGGCTCTAGGAA 58.405 52.381 13.24 0.00 44.87 3.36
3492 7003 1.203025 GGTAATCCTCCGGCTCTAGGA 60.203 57.143 11.76 11.76 45.76 2.94
3493 7004 1.258676 GGTAATCCTCCGGCTCTAGG 58.741 60.000 0.00 0.00 0.00 3.02
3494 7005 0.882474 CGGTAATCCTCCGGCTCTAG 59.118 60.000 0.00 0.00 43.68 2.43
3495 7006 0.475475 TCGGTAATCCTCCGGCTCTA 59.525 55.000 0.00 0.00 46.82 2.43
3496 7007 0.396695 TTCGGTAATCCTCCGGCTCT 60.397 55.000 0.00 0.00 46.82 4.09
3497 7008 0.249363 GTTCGGTAATCCTCCGGCTC 60.249 60.000 0.00 0.00 46.82 4.70
3498 7009 1.821258 GTTCGGTAATCCTCCGGCT 59.179 57.895 0.00 0.00 46.82 5.52
3499 7010 1.590792 CGTTCGGTAATCCTCCGGC 60.591 63.158 0.00 0.00 46.82 6.13
3500 7011 1.066918 CCGTTCGGTAATCCTCCGG 59.933 63.158 0.00 0.00 46.82 5.14
3502 7013 0.249363 GAGCCGTTCGGTAATCCTCC 60.249 60.000 12.81 0.00 0.00 4.30
3503 7014 0.249363 GGAGCCGTTCGGTAATCCTC 60.249 60.000 12.81 9.55 0.00 3.71
3504 7015 0.686769 AGGAGCCGTTCGGTAATCCT 60.687 55.000 20.43 20.43 33.32 3.24
3505 7016 0.177373 AAGGAGCCGTTCGGTAATCC 59.823 55.000 17.74 17.74 0.00 3.01
3506 7017 2.100418 ACTAAGGAGCCGTTCGGTAATC 59.900 50.000 12.81 8.48 0.00 1.75
3507 7018 2.105766 ACTAAGGAGCCGTTCGGTAAT 58.894 47.619 12.81 0.00 0.00 1.89
3508 7019 1.549203 ACTAAGGAGCCGTTCGGTAA 58.451 50.000 12.81 0.00 0.00 2.85
3509 7020 1.203052 CAACTAAGGAGCCGTTCGGTA 59.797 52.381 12.81 0.00 0.00 4.02
3510 7021 0.037605 CAACTAAGGAGCCGTTCGGT 60.038 55.000 12.81 0.00 0.00 4.69
3511 7022 0.037605 ACAACTAAGGAGCCGTTCGG 60.038 55.000 6.90 6.90 0.00 4.30
3512 7023 1.459592 CAACAACTAAGGAGCCGTTCG 59.540 52.381 0.00 0.00 0.00 3.95
3513 7024 1.804748 CCAACAACTAAGGAGCCGTTC 59.195 52.381 0.00 0.00 0.00 3.95
3514 7025 1.892209 CCAACAACTAAGGAGCCGTT 58.108 50.000 0.00 0.00 0.00 4.44
3515 7026 0.605589 GCCAACAACTAAGGAGCCGT 60.606 55.000 0.00 0.00 0.00 5.68
3516 7027 0.321653 AGCCAACAACTAAGGAGCCG 60.322 55.000 0.00 0.00 0.00 5.52
3517 7028 1.813178 GAAGCCAACAACTAAGGAGCC 59.187 52.381 0.00 0.00 0.00 4.70
3518 7029 1.464997 CGAAGCCAACAACTAAGGAGC 59.535 52.381 0.00 0.00 0.00 4.70
3519 7030 3.040147 TCGAAGCCAACAACTAAGGAG 57.960 47.619 0.00 0.00 0.00 3.69
3520 7031 3.695830 ATCGAAGCCAACAACTAAGGA 57.304 42.857 0.00 0.00 0.00 3.36
3521 7032 4.766404 AAATCGAAGCCAACAACTAAGG 57.234 40.909 0.00 0.00 0.00 2.69
3522 7033 5.795441 GCTAAAATCGAAGCCAACAACTAAG 59.205 40.000 0.00 0.00 32.40 2.18
3523 7034 5.472137 AGCTAAAATCGAAGCCAACAACTAA 59.528 36.000 3.24 0.00 39.64 2.24
3547 7058 9.258826 CCAAATGAACAGAACAATTTCATGTTA 57.741 29.630 0.00 0.00 43.31 2.41
3564 7075 2.159114 AGCAACACCACACCAAATGAAC 60.159 45.455 0.00 0.00 0.00 3.18
3577 7088 3.447742 CTTTTTCTGTGGAAGCAACACC 58.552 45.455 3.50 0.00 38.05 4.16
3591 7102 7.466320 GCAATCACTTGACATTTTGCTTTTTCT 60.466 33.333 7.66 0.00 34.96 2.52
3598 7109 3.656559 AGGCAATCACTTGACATTTTGC 58.343 40.909 6.70 6.70 43.39 3.68
3613 7124 5.711976 GGCACAACCAGAATATATAGGCAAT 59.288 40.000 0.00 0.00 38.86 3.56
3614 7125 5.070001 GGCACAACCAGAATATATAGGCAA 58.930 41.667 0.00 0.00 38.86 4.52
3615 7126 4.506625 GGGCACAACCAGAATATATAGGCA 60.507 45.833 0.00 0.00 42.05 4.75
3616 7127 4.010349 GGGCACAACCAGAATATATAGGC 58.990 47.826 0.00 0.00 42.05 3.93
3617 7128 5.241403 TGGGCACAACCAGAATATATAGG 57.759 43.478 0.00 0.00 42.05 2.57
3644 7168 8.447053 CAATCATGCACATTTTTCATCATTGAA 58.553 29.630 0.00 0.00 40.09 2.69
3690 7214 2.865343 ATAACGACGGGCACTCTAAG 57.135 50.000 0.00 0.00 0.00 2.18
3732 7256 1.211457 AGATGCAGGGACCAATCTGTC 59.789 52.381 0.00 0.00 33.81 3.51
3733 7257 1.293062 AGATGCAGGGACCAATCTGT 58.707 50.000 0.00 0.00 33.81 3.41
3734 7258 2.022195 CAAGATGCAGGGACCAATCTG 58.978 52.381 0.00 0.00 0.00 2.90
3735 7259 1.637553 ACAAGATGCAGGGACCAATCT 59.362 47.619 0.00 0.00 0.00 2.40
3736 7260 2.134789 ACAAGATGCAGGGACCAATC 57.865 50.000 0.00 0.00 0.00 2.67
3737 7261 2.610438 AACAAGATGCAGGGACCAAT 57.390 45.000 0.00 0.00 0.00 3.16
3738 7262 2.375174 ACTAACAAGATGCAGGGACCAA 59.625 45.455 0.00 0.00 0.00 3.67
3766 7294 5.965922 GGGATAAATAATGCCACCATTAGC 58.034 41.667 3.03 0.00 45.26 3.09
3777 7305 7.872483 GTGGCCAATAAACAGGGATAAATAATG 59.128 37.037 7.24 0.00 0.00 1.90
3794 7322 4.929479 ACCTGTAAAATCTGTGGCCAATA 58.071 39.130 7.24 0.00 0.00 1.90
3805 7333 8.997621 TGTATTCAGTAGTGACCTGTAAAATC 57.002 34.615 0.00 0.00 30.10 2.17
3895 7423 3.714798 ACAAAAAGACAGGTCTACAGGGA 59.285 43.478 1.78 0.00 39.39 4.20
3911 7439 4.880696 CAGGCCCATCAAAGAAAACAAAAA 59.119 37.500 0.00 0.00 0.00 1.94
3929 7457 2.435059 GGTGAACGCTCTCAGGCC 60.435 66.667 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.