Multiple sequence alignment - TraesCS7D01G038000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G038000 chr7D 100.000 2264 0 0 1 2264 19390764 19393027 0.000000e+00 4181.0
1 TraesCS7D01G038000 chr7D 93.598 328 20 1 272 599 276017302 276016976 2.610000e-134 488.0
2 TraesCS7D01G038000 chr7A 88.869 1716 122 27 594 2264 19816224 19817915 0.000000e+00 2047.0
3 TraesCS7D01G038000 chr7A 92.988 328 22 1 272 599 302409561 302409887 5.660000e-131 477.0
4 TraesCS7D01G038000 chr4A 91.082 684 32 6 594 1255 713631168 713630492 0.000000e+00 898.0
5 TraesCS7D01G038000 chr4A 80.328 610 70 28 1379 1983 713630408 713629844 1.250000e-112 416.0
6 TraesCS7D01G038000 chr4A 94.915 118 6 0 9 126 713631658 713631541 3.840000e-43 185.0
7 TraesCS7D01G038000 chr4A 78.571 154 12 8 125 273 713631301 713631164 5.180000e-12 82.4
8 TraesCS7D01G038000 chr5D 93.598 328 20 1 272 599 369464214 369464540 2.610000e-134 488.0
9 TraesCS7D01G038000 chr3D 93.293 328 21 1 272 599 151107317 151107643 1.220000e-132 483.0
10 TraesCS7D01G038000 chr3D 93.293 328 21 1 272 599 307003243 307003569 1.220000e-132 483.0
11 TraesCS7D01G038000 chr3D 91.813 342 26 2 265 606 7428773 7429112 2.030000e-130 475.0
12 TraesCS7D01G038000 chr3D 92.470 332 24 1 268 599 63222785 63222455 7.320000e-130 473.0
13 TraesCS7D01G038000 chr7B 92.749 331 23 1 269 599 252394102 252393773 5.660000e-131 477.0
14 TraesCS7D01G038000 chr1A 92.988 328 22 1 272 599 363116875 363117201 5.660000e-131 477.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G038000 chr7D 19390764 19393027 2263 False 4181.00 4181 100.000 1 2264 1 chr7D.!!$F1 2263
1 TraesCS7D01G038000 chr7A 19816224 19817915 1691 False 2047.00 2047 88.869 594 2264 1 chr7A.!!$F1 1670
2 TraesCS7D01G038000 chr4A 713629844 713631658 1814 True 395.35 898 86.224 9 1983 4 chr4A.!!$R1 1974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 445 0.387929 CTCCCTCAATTAGCGCCGTA 59.612 55.0 2.29 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 1976 0.108585 TCCAGGCAGTGACCAGAAAC 59.891 55.0 0.0 0.0 0.0 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.880027 GGTGACCTTTTTGCGTCATCT 59.120 47.619 0.00 0.00 40.88 2.90
26 27 2.808543 GTGACCTTTTTGCGTCATCTCT 59.191 45.455 0.00 0.00 40.88 3.10
118 119 5.741425 CATGTATGCTCGACCAAAACTATG 58.259 41.667 0.00 0.00 0.00 2.23
123 124 7.551262 TGTATGCTCGACCAAAACTATGTATTT 59.449 33.333 0.00 0.00 0.00 1.40
164 406 7.901874 TTTTTAACGACATTGAGCAAAGTAC 57.098 32.000 0.00 0.00 0.00 2.73
165 407 3.788434 AACGACATTGAGCAAAGTACG 57.212 42.857 0.00 0.00 0.00 3.67
166 408 2.750948 ACGACATTGAGCAAAGTACGT 58.249 42.857 0.00 0.00 0.00 3.57
167 409 2.475111 ACGACATTGAGCAAAGTACGTG 59.525 45.455 0.00 0.00 30.86 4.49
168 410 2.159841 CGACATTGAGCAAAGTACGTGG 60.160 50.000 0.00 0.00 0.00 4.94
169 411 3.064207 GACATTGAGCAAAGTACGTGGA 58.936 45.455 0.00 0.00 0.00 4.02
170 412 3.472652 ACATTGAGCAAAGTACGTGGAA 58.527 40.909 0.00 0.00 0.00 3.53
171 413 4.072131 ACATTGAGCAAAGTACGTGGAAT 58.928 39.130 0.00 0.00 0.00 3.01
172 414 5.242434 ACATTGAGCAAAGTACGTGGAATA 58.758 37.500 0.00 0.00 0.00 1.75
173 415 5.121768 ACATTGAGCAAAGTACGTGGAATAC 59.878 40.000 0.00 0.00 0.00 1.89
174 416 3.592059 TGAGCAAAGTACGTGGAATACC 58.408 45.455 0.00 0.00 0.00 2.73
175 417 3.007074 TGAGCAAAGTACGTGGAATACCA 59.993 43.478 0.00 0.00 44.76 3.25
189 431 3.450096 GGAATACCAAGTACGTTCTCCCT 59.550 47.826 0.00 0.00 35.97 4.20
196 438 5.109903 CCAAGTACGTTCTCCCTCAATTAG 58.890 45.833 0.00 0.00 0.00 1.73
199 441 0.931005 CGTTCTCCCTCAATTAGCGC 59.069 55.000 0.00 0.00 0.00 5.92
203 445 0.387929 CTCCCTCAATTAGCGCCGTA 59.612 55.000 2.29 0.00 0.00 4.02
214 456 2.154569 GCGCCGTACGTCAAGGTAC 61.155 63.158 15.21 3.50 46.11 3.34
248 495 7.148340 GGTGAATTTATTCTGAAGTGACTCCAG 60.148 40.741 0.00 0.00 37.67 3.86
254 501 2.894126 TCTGAAGTGACTCCAGTCTTCC 59.106 50.000 0.00 0.00 44.99 3.46
267 514 1.340248 AGTCTTCCGTGAACGATGTGT 59.660 47.619 4.03 0.00 43.02 3.72
268 515 1.455786 GTCTTCCGTGAACGATGTGTG 59.544 52.381 4.03 0.00 43.02 3.82
269 516 1.338655 TCTTCCGTGAACGATGTGTGA 59.661 47.619 4.03 0.00 43.02 3.58
270 517 1.721389 CTTCCGTGAACGATGTGTGAG 59.279 52.381 4.03 0.00 43.02 3.51
271 518 0.671796 TCCGTGAACGATGTGTGAGT 59.328 50.000 4.03 0.00 43.02 3.41
272 519 1.881324 TCCGTGAACGATGTGTGAGTA 59.119 47.619 4.03 0.00 43.02 2.59
273 520 1.983605 CCGTGAACGATGTGTGAGTAC 59.016 52.381 4.03 0.00 43.02 2.73
274 521 2.351447 CCGTGAACGATGTGTGAGTACT 60.351 50.000 4.03 0.00 43.02 2.73
275 522 2.909244 CGTGAACGATGTGTGAGTACTC 59.091 50.000 16.32 16.32 43.02 2.59
276 523 3.243336 GTGAACGATGTGTGAGTACTCC 58.757 50.000 20.11 11.73 0.00 3.85
277 524 2.230508 TGAACGATGTGTGAGTACTCCC 59.769 50.000 20.11 9.54 0.00 4.30
278 525 2.217510 ACGATGTGTGAGTACTCCCT 57.782 50.000 20.11 0.00 0.00 4.20
279 526 2.093106 ACGATGTGTGAGTACTCCCTC 58.907 52.381 20.11 10.22 0.00 4.30
280 527 1.405821 CGATGTGTGAGTACTCCCTCC 59.594 57.143 20.11 6.26 0.00 4.30
281 528 2.741145 GATGTGTGAGTACTCCCTCCT 58.259 52.381 20.11 2.78 0.00 3.69
282 529 2.696526 TGTGTGAGTACTCCCTCCTT 57.303 50.000 20.11 0.00 0.00 3.36
283 530 2.972348 TGTGTGAGTACTCCCTCCTTT 58.028 47.619 20.11 0.00 0.00 3.11
284 531 2.897969 TGTGTGAGTACTCCCTCCTTTC 59.102 50.000 20.11 3.36 0.00 2.62
285 532 2.234168 GTGTGAGTACTCCCTCCTTTCC 59.766 54.545 20.11 0.00 0.00 3.13
286 533 1.477295 GTGAGTACTCCCTCCTTTCCG 59.523 57.143 20.11 0.00 0.00 4.30
287 534 1.112950 GAGTACTCCCTCCTTTCCGG 58.887 60.000 12.13 0.00 0.00 5.14
288 535 0.412640 AGTACTCCCTCCTTTCCGGT 59.587 55.000 0.00 0.00 0.00 5.28
289 536 1.203275 AGTACTCCCTCCTTTCCGGTT 60.203 52.381 0.00 0.00 0.00 4.44
290 537 1.627329 GTACTCCCTCCTTTCCGGTTT 59.373 52.381 0.00 0.00 0.00 3.27
291 538 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
292 539 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
293 540 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
294 541 3.710165 ACTCCCTCCTTTCCGGTTTATAG 59.290 47.826 0.00 0.00 0.00 1.31
295 542 3.043418 TCCCTCCTTTCCGGTTTATAGG 58.957 50.000 0.00 4.62 0.00 2.57
296 543 2.105993 CCCTCCTTTCCGGTTTATAGGG 59.894 54.545 16.03 16.03 36.05 3.53
297 544 2.486727 CCTCCTTTCCGGTTTATAGGGC 60.487 54.545 0.00 0.00 0.00 5.19
298 545 2.438392 CTCCTTTCCGGTTTATAGGGCT 59.562 50.000 0.00 0.00 0.00 5.19
299 546 2.848071 TCCTTTCCGGTTTATAGGGCTT 59.152 45.455 0.00 0.00 0.00 4.35
300 547 4.039339 TCCTTTCCGGTTTATAGGGCTTA 58.961 43.478 0.00 0.00 0.00 3.09
301 548 4.661709 TCCTTTCCGGTTTATAGGGCTTAT 59.338 41.667 0.00 0.00 0.00 1.73
302 549 5.001874 CCTTTCCGGTTTATAGGGCTTATC 58.998 45.833 0.00 0.00 0.00 1.75
303 550 5.221864 CCTTTCCGGTTTATAGGGCTTATCT 60.222 44.000 0.00 0.00 0.00 1.98
304 551 5.479124 TTCCGGTTTATAGGGCTTATCTC 57.521 43.478 0.00 0.00 0.00 2.75
305 552 4.485875 TCCGGTTTATAGGGCTTATCTCA 58.514 43.478 0.00 0.00 0.00 3.27
306 553 4.527038 TCCGGTTTATAGGGCTTATCTCAG 59.473 45.833 0.00 0.00 0.00 3.35
307 554 4.527038 CCGGTTTATAGGGCTTATCTCAGA 59.473 45.833 0.00 0.00 0.00 3.27
308 555 5.011738 CCGGTTTATAGGGCTTATCTCAGAA 59.988 44.000 0.00 0.00 0.00 3.02
309 556 6.295916 CCGGTTTATAGGGCTTATCTCAGAAT 60.296 42.308 0.00 0.00 0.00 2.40
310 557 7.162082 CGGTTTATAGGGCTTATCTCAGAATT 58.838 38.462 0.00 0.00 0.00 2.17
311 558 7.661847 CGGTTTATAGGGCTTATCTCAGAATTT 59.338 37.037 0.00 0.00 0.00 1.82
312 559 9.355916 GGTTTATAGGGCTTATCTCAGAATTTT 57.644 33.333 0.00 0.00 0.00 1.82
318 565 8.885693 AGGGCTTATCTCAGAATTTTAGTTTT 57.114 30.769 0.00 0.00 0.00 2.43
319 566 9.314133 AGGGCTTATCTCAGAATTTTAGTTTTT 57.686 29.630 0.00 0.00 0.00 1.94
320 567 9.574458 GGGCTTATCTCAGAATTTTAGTTTTTC 57.426 33.333 0.00 0.00 0.00 2.29
321 568 9.574458 GGCTTATCTCAGAATTTTAGTTTTTCC 57.426 33.333 0.00 0.00 0.00 3.13
342 589 9.447157 TTTTCCATTTTATAAGCCTCAATTTGG 57.553 29.630 0.00 0.00 0.00 3.28
343 590 7.732222 TCCATTTTATAAGCCTCAATTTGGT 57.268 32.000 0.00 0.00 0.00 3.67
344 591 8.144862 TCCATTTTATAAGCCTCAATTTGGTT 57.855 30.769 0.00 0.00 0.00 3.67
345 592 8.040132 TCCATTTTATAAGCCTCAATTTGGTTG 58.960 33.333 0.00 0.00 39.25 3.77
346 593 7.823799 CCATTTTATAAGCCTCAATTTGGTTGT 59.176 33.333 0.00 0.00 38.95 3.32
347 594 9.218440 CATTTTATAAGCCTCAATTTGGTTGTT 57.782 29.630 0.00 0.00 38.95 2.83
348 595 8.825667 TTTTATAAGCCTCAATTTGGTTGTTC 57.174 30.769 0.00 0.00 38.95 3.18
349 596 3.751479 AAGCCTCAATTTGGTTGTTCC 57.249 42.857 0.00 0.00 38.95 3.62
350 597 1.970640 AGCCTCAATTTGGTTGTTCCC 59.029 47.619 0.00 0.00 38.95 3.97
351 598 1.001974 GCCTCAATTTGGTTGTTCCCC 59.998 52.381 0.00 0.00 38.95 4.81
352 599 2.324541 CCTCAATTTGGTTGTTCCCCA 58.675 47.619 0.00 0.00 38.95 4.96
353 600 2.905736 CCTCAATTTGGTTGTTCCCCAT 59.094 45.455 0.00 0.00 38.95 4.00
354 601 3.055891 CCTCAATTTGGTTGTTCCCCATC 60.056 47.826 0.00 0.00 38.95 3.51
355 602 3.577848 CTCAATTTGGTTGTTCCCCATCA 59.422 43.478 0.00 0.00 38.95 3.07
356 603 3.323403 TCAATTTGGTTGTTCCCCATCAC 59.677 43.478 0.00 0.00 38.95 3.06
357 604 2.461300 TTTGGTTGTTCCCCATCACA 57.539 45.000 0.00 0.00 34.77 3.58
358 605 2.692709 TTGGTTGTTCCCCATCACAT 57.307 45.000 0.00 0.00 34.77 3.21
359 606 1.921982 TGGTTGTTCCCCATCACATG 58.078 50.000 0.00 0.00 34.77 3.21
360 607 1.146774 TGGTTGTTCCCCATCACATGT 59.853 47.619 0.00 0.00 34.77 3.21
361 608 2.247358 GGTTGTTCCCCATCACATGTT 58.753 47.619 0.00 0.00 0.00 2.71
362 609 2.231235 GGTTGTTCCCCATCACATGTTC 59.769 50.000 0.00 0.00 0.00 3.18
363 610 2.890311 GTTGTTCCCCATCACATGTTCA 59.110 45.455 0.00 0.00 0.00 3.18
364 611 2.794103 TGTTCCCCATCACATGTTCAG 58.206 47.619 0.00 0.00 0.00 3.02
365 612 2.374839 TGTTCCCCATCACATGTTCAGA 59.625 45.455 0.00 0.00 0.00 3.27
366 613 3.010472 TGTTCCCCATCACATGTTCAGAT 59.990 43.478 0.00 0.00 0.00 2.90
367 614 4.019174 GTTCCCCATCACATGTTCAGATT 58.981 43.478 0.00 0.00 0.00 2.40
368 615 4.320546 TCCCCATCACATGTTCAGATTT 57.679 40.909 0.00 0.00 0.00 2.17
369 616 4.272489 TCCCCATCACATGTTCAGATTTC 58.728 43.478 0.00 0.00 0.00 2.17
370 617 4.018490 CCCCATCACATGTTCAGATTTCA 58.982 43.478 0.00 0.00 0.00 2.69
371 618 4.463539 CCCCATCACATGTTCAGATTTCAA 59.536 41.667 0.00 0.00 0.00 2.69
372 619 5.393787 CCCCATCACATGTTCAGATTTCAAG 60.394 44.000 0.00 0.00 0.00 3.02
373 620 5.393787 CCCATCACATGTTCAGATTTCAAGG 60.394 44.000 0.00 0.00 0.00 3.61
374 621 5.184479 CCATCACATGTTCAGATTTCAAGGT 59.816 40.000 0.00 0.00 0.00 3.50
375 622 5.694231 TCACATGTTCAGATTTCAAGGTG 57.306 39.130 0.00 0.00 0.00 4.00
376 623 4.022935 TCACATGTTCAGATTTCAAGGTGC 60.023 41.667 0.00 0.00 0.00 5.01
377 624 3.890756 ACATGTTCAGATTTCAAGGTGCA 59.109 39.130 0.00 0.00 0.00 4.57
378 625 4.525487 ACATGTTCAGATTTCAAGGTGCAT 59.475 37.500 0.00 0.00 0.00 3.96
379 626 5.011329 ACATGTTCAGATTTCAAGGTGCATT 59.989 36.000 0.00 0.00 0.00 3.56
380 627 6.209192 ACATGTTCAGATTTCAAGGTGCATTA 59.791 34.615 0.00 0.00 0.00 1.90
381 628 6.647334 TGTTCAGATTTCAAGGTGCATTAA 57.353 33.333 0.00 0.00 0.00 1.40
382 629 6.680810 TGTTCAGATTTCAAGGTGCATTAAG 58.319 36.000 0.00 0.00 0.00 1.85
383 630 6.265196 TGTTCAGATTTCAAGGTGCATTAAGT 59.735 34.615 0.00 0.00 0.00 2.24
384 631 6.500684 TCAGATTTCAAGGTGCATTAAGTC 57.499 37.500 0.00 0.00 0.00 3.01
385 632 6.003326 TCAGATTTCAAGGTGCATTAAGTCA 58.997 36.000 0.00 0.00 0.00 3.41
386 633 6.660521 TCAGATTTCAAGGTGCATTAAGTCAT 59.339 34.615 0.00 0.00 0.00 3.06
387 634 6.971184 CAGATTTCAAGGTGCATTAAGTCATC 59.029 38.462 0.00 0.00 0.00 2.92
388 635 4.944962 TTCAAGGTGCATTAAGTCATCG 57.055 40.909 0.00 0.00 0.00 3.84
389 636 2.677836 TCAAGGTGCATTAAGTCATCGC 59.322 45.455 0.00 0.00 0.00 4.58
390 637 2.401583 AGGTGCATTAAGTCATCGCA 57.598 45.000 0.00 0.00 0.00 5.10
391 638 2.923121 AGGTGCATTAAGTCATCGCAT 58.077 42.857 0.00 0.00 34.66 4.73
392 639 2.615447 AGGTGCATTAAGTCATCGCATG 59.385 45.455 0.00 0.00 34.66 4.06
393 640 2.378806 GTGCATTAAGTCATCGCATGC 58.621 47.619 7.91 7.91 40.61 4.06
394 641 2.015587 TGCATTAAGTCATCGCATGCA 58.984 42.857 19.57 5.34 46.14 3.96
395 642 2.422832 TGCATTAAGTCATCGCATGCAA 59.577 40.909 19.57 0.00 45.53 4.08
396 643 3.040795 GCATTAAGTCATCGCATGCAAG 58.959 45.455 19.57 6.59 40.06 4.01
397 644 3.488047 GCATTAAGTCATCGCATGCAAGT 60.488 43.478 19.57 0.00 40.06 3.16
398 645 4.260743 GCATTAAGTCATCGCATGCAAGTA 60.261 41.667 19.57 0.00 40.06 2.24
399 646 5.561532 GCATTAAGTCATCGCATGCAAGTAT 60.562 40.000 19.57 2.16 40.06 2.12
400 647 6.432936 CATTAAGTCATCGCATGCAAGTATT 58.567 36.000 19.57 7.33 0.00 1.89
401 648 7.575365 CATTAAGTCATCGCATGCAAGTATTA 58.425 34.615 19.57 6.35 0.00 0.98
402 649 7.546778 TTAAGTCATCGCATGCAAGTATTAA 57.453 32.000 19.57 11.76 0.00 1.40
403 650 5.663795 AGTCATCGCATGCAAGTATTAAG 57.336 39.130 19.57 0.00 0.00 1.85
404 651 5.359756 AGTCATCGCATGCAAGTATTAAGA 58.640 37.500 19.57 3.41 0.00 2.10
405 652 5.464722 AGTCATCGCATGCAAGTATTAAGAG 59.535 40.000 19.57 0.00 0.00 2.85
406 653 5.463392 GTCATCGCATGCAAGTATTAAGAGA 59.537 40.000 19.57 2.05 0.00 3.10
407 654 6.018751 GTCATCGCATGCAAGTATTAAGAGAA 60.019 38.462 19.57 0.00 0.00 2.87
408 655 5.973651 TCGCATGCAAGTATTAAGAGAAG 57.026 39.130 19.57 0.00 0.00 2.85
409 656 5.660460 TCGCATGCAAGTATTAAGAGAAGA 58.340 37.500 19.57 0.00 0.00 2.87
410 657 6.283694 TCGCATGCAAGTATTAAGAGAAGAT 58.716 36.000 19.57 0.00 0.00 2.40
411 658 6.763135 TCGCATGCAAGTATTAAGAGAAGATT 59.237 34.615 19.57 0.00 0.00 2.40
412 659 6.849811 CGCATGCAAGTATTAAGAGAAGATTG 59.150 38.462 19.57 0.00 0.00 2.67
413 660 7.254556 CGCATGCAAGTATTAAGAGAAGATTGA 60.255 37.037 19.57 0.00 0.00 2.57
414 661 7.854916 GCATGCAAGTATTAAGAGAAGATTGAC 59.145 37.037 14.21 0.00 0.00 3.18
415 662 7.849804 TGCAAGTATTAAGAGAAGATTGACC 57.150 36.000 0.00 0.00 0.00 4.02
416 663 7.394016 TGCAAGTATTAAGAGAAGATTGACCA 58.606 34.615 0.00 0.00 0.00 4.02
417 664 7.882791 TGCAAGTATTAAGAGAAGATTGACCAA 59.117 33.333 0.00 0.00 0.00 3.67
418 665 8.897752 GCAAGTATTAAGAGAAGATTGACCAAT 58.102 33.333 0.00 0.00 0.00 3.16
420 667 8.443953 AGTATTAAGAGAAGATTGACCAATGC 57.556 34.615 0.00 0.00 0.00 3.56
421 668 8.049117 AGTATTAAGAGAAGATTGACCAATGCA 58.951 33.333 0.00 0.00 0.00 3.96
422 669 7.893124 ATTAAGAGAAGATTGACCAATGCAT 57.107 32.000 0.00 0.00 0.00 3.96
423 670 5.578005 AAGAGAAGATTGACCAATGCATG 57.422 39.130 0.00 0.00 0.00 4.06
424 671 4.597004 AGAGAAGATTGACCAATGCATGT 58.403 39.130 0.00 0.00 0.00 3.21
425 672 5.748402 AGAGAAGATTGACCAATGCATGTA 58.252 37.500 0.00 0.00 0.00 2.29
426 673 6.363065 AGAGAAGATTGACCAATGCATGTAT 58.637 36.000 0.00 0.00 0.00 2.29
427 674 6.832384 AGAGAAGATTGACCAATGCATGTATT 59.168 34.615 0.00 2.84 0.00 1.89
428 675 7.341256 AGAGAAGATTGACCAATGCATGTATTT 59.659 33.333 6.26 0.00 0.00 1.40
429 676 7.844009 AGAAGATTGACCAATGCATGTATTTT 58.156 30.769 6.26 0.00 0.00 1.82
430 677 8.970020 AGAAGATTGACCAATGCATGTATTTTA 58.030 29.630 6.26 0.00 0.00 1.52
431 678 9.754382 GAAGATTGACCAATGCATGTATTTTAT 57.246 29.630 6.26 0.00 0.00 1.40
432 679 9.537192 AAGATTGACCAATGCATGTATTTTATG 57.463 29.630 6.26 0.00 0.00 1.90
499 746 9.814899 TTTGAGAAAAACAAGAGCATTAATTGA 57.185 25.926 0.00 0.00 0.00 2.57
500 747 9.467258 TTGAGAAAAACAAGAGCATTAATTGAG 57.533 29.630 0.00 0.00 0.00 3.02
501 748 8.632679 TGAGAAAAACAAGAGCATTAATTGAGT 58.367 29.630 0.00 0.00 0.00 3.41
509 756 9.143631 ACAAGAGCATTAATTGAGTATTTTTGC 57.856 29.630 0.00 0.00 35.11 3.68
510 757 9.142515 CAAGAGCATTAATTGAGTATTTTTGCA 57.857 29.630 0.00 0.00 36.30 4.08
511 758 9.709495 AAGAGCATTAATTGAGTATTTTTGCAA 57.291 25.926 0.00 0.00 36.30 4.08
512 759 9.709495 AGAGCATTAATTGAGTATTTTTGCAAA 57.291 25.926 8.05 8.05 36.30 3.68
513 760 9.745323 GAGCATTAATTGAGTATTTTTGCAAAC 57.255 29.630 12.39 0.37 36.30 2.93
514 761 9.492973 AGCATTAATTGAGTATTTTTGCAAACT 57.507 25.926 12.39 6.26 36.30 2.66
538 785 9.614792 ACTATAAAAAGTATTCCATCACTCACC 57.385 33.333 0.00 0.00 0.00 4.02
539 786 9.613428 CTATAAAAAGTATTCCATCACTCACCA 57.387 33.333 0.00 0.00 0.00 4.17
541 788 7.396540 AAAAAGTATTCCATCACTCACCATC 57.603 36.000 0.00 0.00 0.00 3.51
542 789 5.965033 AAGTATTCCATCACTCACCATCT 57.035 39.130 0.00 0.00 0.00 2.90
543 790 7.437713 AAAGTATTCCATCACTCACCATCTA 57.562 36.000 0.00 0.00 0.00 1.98
544 791 7.623999 AAGTATTCCATCACTCACCATCTAT 57.376 36.000 0.00 0.00 0.00 1.98
545 792 7.238486 AGTATTCCATCACTCACCATCTATC 57.762 40.000 0.00 0.00 0.00 2.08
546 793 7.015680 AGTATTCCATCACTCACCATCTATCT 58.984 38.462 0.00 0.00 0.00 1.98
547 794 6.760440 ATTCCATCACTCACCATCTATCTT 57.240 37.500 0.00 0.00 0.00 2.40
548 795 5.541953 TCCATCACTCACCATCTATCTTG 57.458 43.478 0.00 0.00 0.00 3.02
549 796 4.346127 TCCATCACTCACCATCTATCTTGG 59.654 45.833 0.00 0.00 40.26 3.61
551 798 5.397221 CCATCACTCACCATCTATCTTGGTT 60.397 44.000 0.00 0.00 45.19 3.67
552 799 5.089970 TCACTCACCATCTATCTTGGTTG 57.910 43.478 0.00 0.00 45.19 3.77
553 800 4.532126 TCACTCACCATCTATCTTGGTTGT 59.468 41.667 0.00 0.00 45.19 3.32
554 801 5.013079 TCACTCACCATCTATCTTGGTTGTT 59.987 40.000 0.00 0.00 45.19 2.83
555 802 5.122869 CACTCACCATCTATCTTGGTTGTTG 59.877 44.000 0.00 0.00 45.19 3.33
556 803 5.013079 ACTCACCATCTATCTTGGTTGTTGA 59.987 40.000 0.00 0.00 45.19 3.18
557 804 5.491070 TCACCATCTATCTTGGTTGTTGAG 58.509 41.667 0.00 0.00 45.19 3.02
558 805 5.248248 TCACCATCTATCTTGGTTGTTGAGA 59.752 40.000 0.00 0.00 45.19 3.27
559 806 6.070021 TCACCATCTATCTTGGTTGTTGAGAT 60.070 38.462 0.00 0.00 45.19 2.75
560 807 6.600822 CACCATCTATCTTGGTTGTTGAGATT 59.399 38.462 0.00 0.00 45.19 2.40
561 808 7.121759 CACCATCTATCTTGGTTGTTGAGATTT 59.878 37.037 0.00 0.00 45.19 2.17
562 809 7.671398 ACCATCTATCTTGGTTGTTGAGATTTT 59.329 33.333 0.00 0.00 45.19 1.82
563 810 8.526147 CCATCTATCTTGGTTGTTGAGATTTTT 58.474 33.333 0.00 0.00 32.68 1.94
572 819 8.364129 TGGTTGTTGAGATTTTTAAATTGAGC 57.636 30.769 0.00 0.00 0.00 4.26
573 820 8.203485 TGGTTGTTGAGATTTTTAAATTGAGCT 58.797 29.630 0.00 0.00 0.00 4.09
574 821 8.703336 GGTTGTTGAGATTTTTAAATTGAGCTC 58.297 33.333 6.82 6.82 0.00 4.09
575 822 9.468532 GTTGTTGAGATTTTTAAATTGAGCTCT 57.531 29.630 16.19 0.00 0.00 4.09
585 832 8.795842 TTTTAAATTGAGCTCTATAAACCGGA 57.204 30.769 16.19 0.00 0.00 5.14
586 833 8.795842 TTTAAATTGAGCTCTATAAACCGGAA 57.204 30.769 16.19 0.00 0.00 4.30
587 834 8.795842 TTAAATTGAGCTCTATAAACCGGAAA 57.204 30.769 16.19 0.00 0.00 3.13
588 835 6.927294 AATTGAGCTCTATAAACCGGAAAG 57.073 37.500 16.19 0.00 0.00 2.62
589 836 5.670792 TTGAGCTCTATAAACCGGAAAGA 57.329 39.130 16.19 2.01 0.00 2.52
590 837 5.670792 TGAGCTCTATAAACCGGAAAGAA 57.329 39.130 16.19 0.00 0.00 2.52
591 838 5.661458 TGAGCTCTATAAACCGGAAAGAAG 58.339 41.667 16.19 0.00 0.00 2.85
592 839 5.024785 AGCTCTATAAACCGGAAAGAAGG 57.975 43.478 9.46 0.00 0.00 3.46
607 854 5.760743 GGAAAGAAGGGAGTATATGTGAAGC 59.239 44.000 0.00 0.00 0.00 3.86
617 864 0.465460 TATGTGAAGCGCATTCCCCC 60.465 55.000 11.47 2.69 37.08 5.40
621 868 3.682292 GAAGCGCATTCCCCCGTCT 62.682 63.158 11.47 0.00 31.14 4.18
627 874 1.275291 CGCATTCCCCCGTCTGTATAT 59.725 52.381 0.00 0.00 0.00 0.86
630 877 4.561938 CGCATTCCCCCGTCTGTATATAAA 60.562 45.833 0.00 0.00 0.00 1.40
631 878 5.310451 GCATTCCCCCGTCTGTATATAAAA 58.690 41.667 0.00 0.00 0.00 1.52
679 926 8.352201 CCAAGATGTTTCTAAAAGAATGTGACA 58.648 33.333 0.00 0.00 33.67 3.58
680 927 9.734620 CAAGATGTTTCTAAAAGAATGTGACAA 57.265 29.630 0.00 0.00 33.67 3.18
818 1067 3.069946 CCAACCGCACATGGCCAT 61.070 61.111 14.09 14.09 40.31 4.40
820 1069 2.048023 CAACCGCACATGGCCATCT 61.048 57.895 17.61 0.00 40.31 2.90
842 1101 3.771160 GGCCGACATCACGTCCCT 61.771 66.667 0.00 0.00 42.07 4.20
850 1109 1.456892 ATCACGTCCCTATCGGCCA 60.457 57.895 2.24 0.00 0.00 5.36
859 1118 0.474184 CCTATCGGCCAACCTCCATT 59.526 55.000 2.24 0.00 0.00 3.16
930 1189 1.344065 TAAACCCCACTCGAGCTCAA 58.656 50.000 13.61 0.00 0.00 3.02
967 1245 2.028567 AGAGGAAGACCAAGAAGAAGCG 60.029 50.000 0.00 0.00 38.94 4.68
997 1275 7.094377 GCTAACCAAATCAAGATACTTCACCAA 60.094 37.037 0.00 0.00 0.00 3.67
1309 1587 1.567504 CCGTCGGTGACCATTGATAC 58.432 55.000 2.08 0.00 0.00 2.24
1338 1616 3.862063 CTTGCCTGCACGTGCGAAC 62.862 63.158 33.22 24.36 45.83 3.95
1361 1639 0.607489 GTGTGTGATCTGGCTTGCCT 60.607 55.000 13.18 0.00 0.00 4.75
1363 1641 1.676635 TGTGATCTGGCTTGCCTGC 60.677 57.895 13.18 1.78 0.00 4.85
1410 1688 2.489971 CCTGTTCTTTTCACTGCCGTA 58.510 47.619 0.00 0.00 0.00 4.02
1417 1695 1.218875 TTTCACTGCCGTACGTGCTG 61.219 55.000 23.60 23.60 0.00 4.41
1463 1742 1.768510 TGTGTCGATTTCGCACGTAA 58.231 45.000 16.66 0.00 43.74 3.18
1548 1827 4.641396 CATGTGTGTGTTCCTTTCCTCTA 58.359 43.478 0.00 0.00 0.00 2.43
1560 1839 8.598916 TGTTCCTTTCCTCTATTTATGTGTGTA 58.401 33.333 0.00 0.00 0.00 2.90
1564 1843 8.210946 CCTTTCCTCTATTTATGTGTGTATCCA 58.789 37.037 0.00 0.00 0.00 3.41
1565 1844 9.613428 CTTTCCTCTATTTATGTGTGTATCCAA 57.387 33.333 0.00 0.00 0.00 3.53
1568 1847 9.778741 TCCTCTATTTATGTGTGTATCCAATTC 57.221 33.333 0.00 0.00 0.00 2.17
1569 1848 9.003658 CCTCTATTTATGTGTGTATCCAATTCC 57.996 37.037 0.00 0.00 0.00 3.01
1570 1849 9.559732 CTCTATTTATGTGTGTATCCAATTCCA 57.440 33.333 0.00 0.00 0.00 3.53
1608 1889 7.865820 TCAGAGGGACATAATTCTGAAAATCT 58.134 34.615 0.00 0.00 42.08 2.40
1659 1942 2.715737 GAGCATCTACTGTCCGATCC 57.284 55.000 0.00 0.00 0.00 3.36
1698 1981 4.295119 ACGTCCAGCGGCGTTTCT 62.295 61.111 9.37 0.00 46.52 2.52
1702 1985 3.423154 CCAGCGGCGTTTCTGGTC 61.423 66.667 19.82 0.00 43.66 4.02
1704 1987 2.665185 AGCGGCGTTTCTGGTCAC 60.665 61.111 9.37 0.00 0.00 3.67
1709 1992 1.598130 GCGTTTCTGGTCACTGCCT 60.598 57.895 0.00 0.00 0.00 4.75
1710 1993 1.845809 GCGTTTCTGGTCACTGCCTG 61.846 60.000 0.00 0.00 0.00 4.85
1715 1998 1.951209 TCTGGTCACTGCCTGGATAA 58.049 50.000 0.00 0.00 0.00 1.75
1807 2091 3.723681 ACCCATATCTGGAATGGACATGT 59.276 43.478 0.00 0.00 45.77 3.21
1809 2093 4.202493 CCCATATCTGGAATGGACATGTGA 60.202 45.833 1.15 0.00 45.77 3.58
1849 2133 3.221389 CGCCTCCCCGTCGGATAA 61.221 66.667 14.39 0.00 41.00 1.75
1882 2166 0.476771 GTCCTCACCTTTGTCCCCAA 59.523 55.000 0.00 0.00 0.00 4.12
1884 2168 1.571457 TCCTCACCTTTGTCCCCAAAA 59.429 47.619 0.00 0.00 39.95 2.44
1980 2264 1.746615 CCTCCACAATGGTCGGCAG 60.747 63.158 0.00 0.00 39.03 4.85
1997 2293 4.531912 GCGAGTCCGACGCGATCA 62.532 66.667 26.05 0.00 44.09 2.92
2006 2302 2.434884 ACGCGATCAACTGGGCAG 60.435 61.111 15.93 0.00 0.00 4.85
2007 2303 2.434884 CGCGATCAACTGGGCAGT 60.435 61.111 0.00 0.00 44.94 4.40
2026 2322 3.522731 CTCGCCAGGGAGGACTCG 61.523 72.222 3.89 0.00 41.22 4.18
2035 2331 1.460273 GGGAGGACTCGAGCTCATCC 61.460 65.000 26.63 26.63 37.79 3.51
2075 2371 4.842091 CGCTTGGCATTGCGCTCC 62.842 66.667 19.18 5.25 45.50 4.70
2123 2419 2.879462 CCTACTCGACGGCGTTGC 60.879 66.667 22.25 5.46 38.98 4.17
2143 2439 4.792804 GTGGCCCAGAGGAGCAGC 62.793 72.222 0.00 0.00 33.47 5.25
2195 2491 3.912907 AGTCCGCGCCCGATTAGG 61.913 66.667 0.00 0.00 40.63 2.69
2215 2511 2.427320 GCAGAGTGACCACAGGCA 59.573 61.111 2.78 0.00 0.00 4.75
2245 2541 1.492133 CCAGCCCCTTCTCCTTGACA 61.492 60.000 0.00 0.00 0.00 3.58
2249 2545 0.322008 CCCCTTCTCCTTGACAGTGC 60.322 60.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.215151 TGACGCAAAAAGGTCACCAATA 58.785 40.909 0.00 0.00 38.19 1.90
1 2 2.028130 TGACGCAAAAAGGTCACCAAT 58.972 42.857 0.00 0.00 38.19 3.16
2 3 1.464734 TGACGCAAAAAGGTCACCAA 58.535 45.000 0.00 0.00 38.19 3.67
3 4 1.606668 GATGACGCAAAAAGGTCACCA 59.393 47.619 0.00 0.00 45.08 4.17
4 5 1.880027 AGATGACGCAAAAAGGTCACC 59.120 47.619 0.00 0.00 45.08 4.02
5 6 2.808543 AGAGATGACGCAAAAAGGTCAC 59.191 45.455 0.00 0.00 45.08 3.67
6 7 2.807967 CAGAGATGACGCAAAAAGGTCA 59.192 45.455 0.00 0.00 46.19 4.02
7 8 2.413371 GCAGAGATGACGCAAAAAGGTC 60.413 50.000 0.00 0.00 0.00 3.85
17 18 5.557893 GCAAAATAAGCTAGCAGAGATGACG 60.558 44.000 18.83 0.00 0.00 4.35
26 27 6.757897 ACAATACTGCAAAATAAGCTAGCA 57.242 33.333 18.83 0.00 0.00 3.49
59 60 3.264964 ACAATTTTTAGCCCGGGTCTAGA 59.735 43.478 24.63 15.83 0.00 2.43
164 406 3.841643 AGAACGTACTTGGTATTCCACG 58.158 45.455 0.00 0.00 44.22 4.94
165 407 4.179298 GGAGAACGTACTTGGTATTCCAC 58.821 47.826 0.00 0.00 44.22 4.02
166 408 3.196254 GGGAGAACGTACTTGGTATTCCA 59.804 47.826 0.00 0.00 42.66 3.53
167 409 3.450096 AGGGAGAACGTACTTGGTATTCC 59.550 47.826 0.00 0.00 0.00 3.01
168 410 4.159135 TGAGGGAGAACGTACTTGGTATTC 59.841 45.833 0.00 0.00 0.00 1.75
169 411 4.091549 TGAGGGAGAACGTACTTGGTATT 58.908 43.478 0.00 0.00 0.00 1.89
170 412 3.705051 TGAGGGAGAACGTACTTGGTAT 58.295 45.455 0.00 0.00 0.00 2.73
171 413 3.159213 TGAGGGAGAACGTACTTGGTA 57.841 47.619 0.00 0.00 0.00 3.25
172 414 2.005370 TGAGGGAGAACGTACTTGGT 57.995 50.000 0.00 0.00 0.00 3.67
173 415 3.611766 ATTGAGGGAGAACGTACTTGG 57.388 47.619 0.00 0.00 0.00 3.61
174 416 4.567159 GCTAATTGAGGGAGAACGTACTTG 59.433 45.833 0.00 0.00 0.00 3.16
175 417 4.677250 CGCTAATTGAGGGAGAACGTACTT 60.677 45.833 0.00 0.00 40.59 2.24
176 418 3.181489 CGCTAATTGAGGGAGAACGTACT 60.181 47.826 0.00 0.00 40.59 2.73
177 419 3.114065 CGCTAATTGAGGGAGAACGTAC 58.886 50.000 0.00 0.00 40.59 3.67
178 420 2.480759 GCGCTAATTGAGGGAGAACGTA 60.481 50.000 0.00 0.00 40.59 3.57
179 421 1.739371 GCGCTAATTGAGGGAGAACGT 60.739 52.381 0.00 0.00 40.59 3.99
189 431 0.170784 TGACGTACGGCGCTAATTGA 59.829 50.000 21.06 0.00 46.11 2.57
196 438 2.154569 GTACCTTGACGTACGGCGC 61.155 63.158 21.06 0.00 46.11 6.53
199 441 2.995466 TCAAGTACCTTGACGTACGG 57.005 50.000 21.06 3.38 44.27 4.02
214 456 8.517878 ACTTCAGAATAAATTCACCACATCAAG 58.482 33.333 5.55 0.00 39.23 3.02
223 465 7.389053 ACTGGAGTCACTTCAGAATAAATTCAC 59.611 37.037 20.94 0.00 39.34 3.18
248 495 1.455786 CACACATCGTTCACGGAAGAC 59.544 52.381 0.00 0.00 40.29 3.01
254 501 2.909244 GAGTACTCACACATCGTTCACG 59.091 50.000 18.20 0.00 41.45 4.35
267 514 1.618888 CCGGAAAGGAGGGAGTACTCA 60.619 57.143 23.91 0.00 45.00 3.41
268 515 1.112950 CCGGAAAGGAGGGAGTACTC 58.887 60.000 14.87 14.87 45.00 2.59
269 516 0.412640 ACCGGAAAGGAGGGAGTACT 59.587 55.000 9.46 0.00 45.00 2.73
270 517 1.273759 AACCGGAAAGGAGGGAGTAC 58.726 55.000 9.46 0.00 45.00 2.73
271 518 2.034436 AAACCGGAAAGGAGGGAGTA 57.966 50.000 9.46 0.00 45.00 2.59
272 519 2.034436 TAAACCGGAAAGGAGGGAGT 57.966 50.000 9.46 0.00 45.00 3.85
273 520 3.071167 CCTATAAACCGGAAAGGAGGGAG 59.929 52.174 9.46 0.00 45.00 4.30
274 521 3.043418 CCTATAAACCGGAAAGGAGGGA 58.957 50.000 9.46 0.00 45.00 4.20
275 522 2.105993 CCCTATAAACCGGAAAGGAGGG 59.894 54.545 9.46 14.71 45.00 4.30
276 523 2.486727 GCCCTATAAACCGGAAAGGAGG 60.487 54.545 9.46 9.03 45.00 4.30
277 524 2.438392 AGCCCTATAAACCGGAAAGGAG 59.562 50.000 9.46 0.00 45.00 3.69
278 525 2.484602 AGCCCTATAAACCGGAAAGGA 58.515 47.619 9.46 0.00 45.00 3.36
280 527 5.866207 AGATAAGCCCTATAAACCGGAAAG 58.134 41.667 9.46 0.00 0.00 2.62
281 528 5.367352 TGAGATAAGCCCTATAAACCGGAAA 59.633 40.000 9.46 0.00 0.00 3.13
282 529 4.903049 TGAGATAAGCCCTATAAACCGGAA 59.097 41.667 9.46 0.00 0.00 4.30
283 530 4.485875 TGAGATAAGCCCTATAAACCGGA 58.514 43.478 9.46 0.00 0.00 5.14
284 531 4.527038 TCTGAGATAAGCCCTATAAACCGG 59.473 45.833 0.00 0.00 0.00 5.28
285 532 5.723672 TCTGAGATAAGCCCTATAAACCG 57.276 43.478 0.00 0.00 0.00 4.44
286 533 8.926092 AAATTCTGAGATAAGCCCTATAAACC 57.074 34.615 0.00 0.00 0.00 3.27
292 539 9.975218 AAAACTAAAATTCTGAGATAAGCCCTA 57.025 29.630 0.00 0.00 0.00 3.53
293 540 8.885693 AAAACTAAAATTCTGAGATAAGCCCT 57.114 30.769 0.00 0.00 0.00 5.19
294 541 9.574458 GAAAAACTAAAATTCTGAGATAAGCCC 57.426 33.333 0.00 0.00 0.00 5.19
295 542 9.574458 GGAAAAACTAAAATTCTGAGATAAGCC 57.426 33.333 0.00 0.00 0.00 4.35
316 563 9.447157 CCAAATTGAGGCTTATAAAATGGAAAA 57.553 29.630 0.00 0.00 0.00 2.29
317 564 8.601546 ACCAAATTGAGGCTTATAAAATGGAAA 58.398 29.630 15.04 0.00 0.00 3.13
318 565 8.144862 ACCAAATTGAGGCTTATAAAATGGAA 57.855 30.769 15.04 0.00 0.00 3.53
319 566 7.732222 ACCAAATTGAGGCTTATAAAATGGA 57.268 32.000 15.04 0.00 0.00 3.41
320 567 7.823799 ACAACCAAATTGAGGCTTATAAAATGG 59.176 33.333 0.00 1.40 41.23 3.16
321 568 8.776376 ACAACCAAATTGAGGCTTATAAAATG 57.224 30.769 0.00 0.00 41.23 2.32
322 569 9.435688 GAACAACCAAATTGAGGCTTATAAAAT 57.564 29.630 0.00 0.00 41.23 1.82
323 570 7.875554 GGAACAACCAAATTGAGGCTTATAAAA 59.124 33.333 0.00 0.00 41.23 1.52
324 571 7.382898 GGAACAACCAAATTGAGGCTTATAAA 58.617 34.615 0.00 0.00 41.23 1.40
325 572 6.071051 GGGAACAACCAAATTGAGGCTTATAA 60.071 38.462 0.00 0.00 41.23 0.98
326 573 5.420739 GGGAACAACCAAATTGAGGCTTATA 59.579 40.000 0.00 0.00 41.23 0.98
327 574 4.222810 GGGAACAACCAAATTGAGGCTTAT 59.777 41.667 0.00 0.00 41.23 1.73
328 575 3.576550 GGGAACAACCAAATTGAGGCTTA 59.423 43.478 0.00 0.00 41.23 3.09
329 576 2.368548 GGGAACAACCAAATTGAGGCTT 59.631 45.455 0.00 0.00 41.23 4.35
330 577 1.970640 GGGAACAACCAAATTGAGGCT 59.029 47.619 0.00 0.00 41.23 4.58
331 578 1.001974 GGGGAACAACCAAATTGAGGC 59.998 52.381 0.00 0.00 41.23 4.70
332 579 2.324541 TGGGGAACAACCAAATTGAGG 58.675 47.619 0.00 0.00 41.23 3.86
333 580 3.577848 TGATGGGGAACAACCAAATTGAG 59.422 43.478 0.00 0.00 42.17 3.02
334 581 3.323403 GTGATGGGGAACAACCAAATTGA 59.677 43.478 0.00 0.00 42.17 2.57
335 582 3.070734 TGTGATGGGGAACAACCAAATTG 59.929 43.478 0.00 0.00 42.17 2.32
336 583 3.312890 TGTGATGGGGAACAACCAAATT 58.687 40.909 0.00 0.00 42.17 1.82
337 584 2.969628 TGTGATGGGGAACAACCAAAT 58.030 42.857 0.00 0.00 42.17 2.32
338 585 2.461300 TGTGATGGGGAACAACCAAA 57.539 45.000 0.00 0.00 42.17 3.28
339 586 2.246469 CATGTGATGGGGAACAACCAA 58.754 47.619 0.00 0.00 42.17 3.67
340 587 1.146774 ACATGTGATGGGGAACAACCA 59.853 47.619 0.00 0.00 43.22 3.67
341 588 1.923356 ACATGTGATGGGGAACAACC 58.077 50.000 0.00 0.00 38.08 3.77
342 589 2.890311 TGAACATGTGATGGGGAACAAC 59.110 45.455 0.00 0.00 33.60 3.32
343 590 3.156293 CTGAACATGTGATGGGGAACAA 58.844 45.455 0.00 0.00 33.60 2.83
344 591 2.374839 TCTGAACATGTGATGGGGAACA 59.625 45.455 0.00 0.00 33.60 3.18
345 592 3.071874 TCTGAACATGTGATGGGGAAC 57.928 47.619 0.00 0.00 33.60 3.62
346 593 4.320546 AATCTGAACATGTGATGGGGAA 57.679 40.909 0.00 0.00 33.60 3.97
347 594 4.263860 TGAAATCTGAACATGTGATGGGGA 60.264 41.667 0.00 0.00 33.60 4.81
348 595 4.018490 TGAAATCTGAACATGTGATGGGG 58.982 43.478 0.00 0.00 33.60 4.96
349 596 5.393787 CCTTGAAATCTGAACATGTGATGGG 60.394 44.000 0.00 0.00 33.60 4.00
350 597 5.184479 ACCTTGAAATCTGAACATGTGATGG 59.816 40.000 0.00 0.00 33.60 3.51
351 598 6.090783 CACCTTGAAATCTGAACATGTGATG 58.909 40.000 0.00 0.00 0.00 3.07
352 599 5.336213 GCACCTTGAAATCTGAACATGTGAT 60.336 40.000 0.00 0.00 0.00 3.06
353 600 4.022935 GCACCTTGAAATCTGAACATGTGA 60.023 41.667 0.00 0.00 0.00 3.58
354 601 4.232221 GCACCTTGAAATCTGAACATGTG 58.768 43.478 0.00 0.00 0.00 3.21
355 602 3.890756 TGCACCTTGAAATCTGAACATGT 59.109 39.130 0.00 0.00 0.00 3.21
356 603 4.508461 TGCACCTTGAAATCTGAACATG 57.492 40.909 0.00 0.00 0.00 3.21
357 604 5.733620 AATGCACCTTGAAATCTGAACAT 57.266 34.783 0.00 0.00 0.00 2.71
358 605 6.265196 ACTTAATGCACCTTGAAATCTGAACA 59.735 34.615 0.00 0.00 0.00 3.18
359 606 6.681777 ACTTAATGCACCTTGAAATCTGAAC 58.318 36.000 0.00 0.00 0.00 3.18
360 607 6.489700 TGACTTAATGCACCTTGAAATCTGAA 59.510 34.615 0.00 0.00 0.00 3.02
361 608 6.003326 TGACTTAATGCACCTTGAAATCTGA 58.997 36.000 0.00 0.00 0.00 3.27
362 609 6.258230 TGACTTAATGCACCTTGAAATCTG 57.742 37.500 0.00 0.00 0.00 2.90
363 610 6.183360 CGATGACTTAATGCACCTTGAAATCT 60.183 38.462 0.00 0.00 0.00 2.40
364 611 5.967674 CGATGACTTAATGCACCTTGAAATC 59.032 40.000 0.00 0.00 0.00 2.17
365 612 5.677091 GCGATGACTTAATGCACCTTGAAAT 60.677 40.000 0.00 0.00 0.00 2.17
366 613 4.379394 GCGATGACTTAATGCACCTTGAAA 60.379 41.667 0.00 0.00 0.00 2.69
367 614 3.126858 GCGATGACTTAATGCACCTTGAA 59.873 43.478 0.00 0.00 0.00 2.69
368 615 2.677836 GCGATGACTTAATGCACCTTGA 59.322 45.455 0.00 0.00 0.00 3.02
369 616 2.419673 TGCGATGACTTAATGCACCTTG 59.580 45.455 0.00 0.00 0.00 3.61
370 617 2.710377 TGCGATGACTTAATGCACCTT 58.290 42.857 0.00 0.00 0.00 3.50
371 618 2.401583 TGCGATGACTTAATGCACCT 57.598 45.000 0.00 0.00 0.00 4.00
372 619 2.855953 GCATGCGATGACTTAATGCACC 60.856 50.000 0.00 0.00 42.48 5.01
373 620 2.223317 TGCATGCGATGACTTAATGCAC 60.223 45.455 14.09 0.00 46.32 4.57
374 621 2.761392 GCATGCGATGACTTAATGCA 57.239 45.000 0.00 0.00 42.48 3.96
375 622 2.761392 TGCATGCGATGACTTAATGC 57.239 45.000 14.09 0.00 43.08 3.56
376 623 4.282950 ACTTGCATGCGATGACTTAATG 57.717 40.909 14.09 0.00 0.00 1.90
377 624 6.624352 AATACTTGCATGCGATGACTTAAT 57.376 33.333 14.09 0.00 0.00 1.40
378 625 7.494298 TCTTAATACTTGCATGCGATGACTTAA 59.506 33.333 14.09 11.06 0.00 1.85
379 626 6.983890 TCTTAATACTTGCATGCGATGACTTA 59.016 34.615 14.09 3.98 0.00 2.24
380 627 5.817296 TCTTAATACTTGCATGCGATGACTT 59.183 36.000 14.09 4.95 0.00 3.01
381 628 5.359756 TCTTAATACTTGCATGCGATGACT 58.640 37.500 14.09 0.00 0.00 3.41
382 629 5.463392 TCTCTTAATACTTGCATGCGATGAC 59.537 40.000 14.09 0.00 0.00 3.06
383 630 5.600696 TCTCTTAATACTTGCATGCGATGA 58.399 37.500 14.09 2.09 0.00 2.92
384 631 5.912360 TCTCTTAATACTTGCATGCGATG 57.088 39.130 14.09 7.99 0.00 3.84
385 632 6.283694 TCTTCTCTTAATACTTGCATGCGAT 58.716 36.000 14.09 3.13 0.00 4.58
386 633 5.660460 TCTTCTCTTAATACTTGCATGCGA 58.340 37.500 14.09 10.84 0.00 5.10
387 634 5.973651 TCTTCTCTTAATACTTGCATGCG 57.026 39.130 14.09 1.59 0.00 4.73
388 635 7.854916 GTCAATCTTCTCTTAATACTTGCATGC 59.145 37.037 11.82 11.82 0.00 4.06
389 636 8.341173 GGTCAATCTTCTCTTAATACTTGCATG 58.659 37.037 0.00 0.00 0.00 4.06
390 637 8.049117 TGGTCAATCTTCTCTTAATACTTGCAT 58.951 33.333 0.00 0.00 0.00 3.96
391 638 7.394016 TGGTCAATCTTCTCTTAATACTTGCA 58.606 34.615 0.00 0.00 0.00 4.08
392 639 7.849804 TGGTCAATCTTCTCTTAATACTTGC 57.150 36.000 0.00 0.00 0.00 4.01
394 641 8.897752 GCATTGGTCAATCTTCTCTTAATACTT 58.102 33.333 0.00 0.00 0.00 2.24
395 642 8.049117 TGCATTGGTCAATCTTCTCTTAATACT 58.951 33.333 0.00 0.00 0.00 2.12
396 643 8.213518 TGCATTGGTCAATCTTCTCTTAATAC 57.786 34.615 0.00 0.00 0.00 1.89
397 644 8.843262 CATGCATTGGTCAATCTTCTCTTAATA 58.157 33.333 0.00 0.00 0.00 0.98
398 645 7.341256 ACATGCATTGGTCAATCTTCTCTTAAT 59.659 33.333 0.00 0.00 0.00 1.40
399 646 6.660521 ACATGCATTGGTCAATCTTCTCTTAA 59.339 34.615 0.00 0.00 0.00 1.85
400 647 6.182627 ACATGCATTGGTCAATCTTCTCTTA 58.817 36.000 0.00 0.00 0.00 2.10
401 648 5.014858 ACATGCATTGGTCAATCTTCTCTT 58.985 37.500 0.00 0.00 0.00 2.85
402 649 4.597004 ACATGCATTGGTCAATCTTCTCT 58.403 39.130 0.00 0.00 0.00 3.10
403 650 4.978083 ACATGCATTGGTCAATCTTCTC 57.022 40.909 0.00 0.00 0.00 2.87
404 651 7.414222 AAATACATGCATTGGTCAATCTTCT 57.586 32.000 0.00 0.00 0.00 2.85
405 652 9.754382 ATAAAATACATGCATTGGTCAATCTTC 57.246 29.630 0.00 0.00 0.00 2.87
406 653 9.537192 CATAAAATACATGCATTGGTCAATCTT 57.463 29.630 0.00 0.00 0.00 2.40
407 654 7.654520 GCATAAAATACATGCATTGGTCAATCT 59.345 33.333 0.00 0.00 46.47 2.40
408 655 7.790000 GCATAAAATACATGCATTGGTCAATC 58.210 34.615 0.00 0.00 46.47 2.67
409 656 7.718272 GCATAAAATACATGCATTGGTCAAT 57.282 32.000 0.00 0.00 46.47 2.57
473 720 9.814899 TCAATTAATGCTCTTGTTTTTCTCAAA 57.185 25.926 0.00 0.00 0.00 2.69
474 721 9.467258 CTCAATTAATGCTCTTGTTTTTCTCAA 57.533 29.630 0.00 0.00 0.00 3.02
475 722 8.632679 ACTCAATTAATGCTCTTGTTTTTCTCA 58.367 29.630 0.00 0.00 0.00 3.27
483 730 9.143631 GCAAAAATACTCAATTAATGCTCTTGT 57.856 29.630 0.00 0.00 36.80 3.16
484 731 9.142515 TGCAAAAATACTCAATTAATGCTCTTG 57.857 29.630 0.00 0.00 38.84 3.02
485 732 9.709495 TTGCAAAAATACTCAATTAATGCTCTT 57.291 25.926 0.00 0.00 38.84 2.85
486 733 9.709495 TTTGCAAAAATACTCAATTAATGCTCT 57.291 25.926 10.02 0.00 38.84 4.09
487 734 9.745323 GTTTGCAAAAATACTCAATTAATGCTC 57.255 29.630 14.67 0.00 38.84 4.26
488 735 9.492973 AGTTTGCAAAAATACTCAATTAATGCT 57.507 25.926 14.67 0.00 38.84 3.79
512 759 9.614792 GGTGAGTGATGGAATACTTTTTATAGT 57.385 33.333 0.00 0.00 0.00 2.12
513 760 9.613428 TGGTGAGTGATGGAATACTTTTTATAG 57.387 33.333 0.00 0.00 0.00 1.31
515 762 9.125026 GATGGTGAGTGATGGAATACTTTTTAT 57.875 33.333 0.00 0.00 0.00 1.40
516 763 8.328758 AGATGGTGAGTGATGGAATACTTTTTA 58.671 33.333 0.00 0.00 0.00 1.52
517 764 7.177878 AGATGGTGAGTGATGGAATACTTTTT 58.822 34.615 0.00 0.00 0.00 1.94
518 765 6.725364 AGATGGTGAGTGATGGAATACTTTT 58.275 36.000 0.00 0.00 0.00 2.27
519 766 6.319048 AGATGGTGAGTGATGGAATACTTT 57.681 37.500 0.00 0.00 0.00 2.66
520 767 5.965033 AGATGGTGAGTGATGGAATACTT 57.035 39.130 0.00 0.00 0.00 2.24
521 768 7.015680 AGATAGATGGTGAGTGATGGAATACT 58.984 38.462 0.00 0.00 0.00 2.12
522 769 7.238486 AGATAGATGGTGAGTGATGGAATAC 57.762 40.000 0.00 0.00 0.00 1.89
523 770 7.256439 CCAAGATAGATGGTGAGTGATGGAATA 60.256 40.741 0.00 0.00 33.08 1.75
524 771 6.465464 CCAAGATAGATGGTGAGTGATGGAAT 60.465 42.308 0.00 0.00 33.08 3.01
525 772 5.163269 CCAAGATAGATGGTGAGTGATGGAA 60.163 44.000 0.00 0.00 33.08 3.53
526 773 4.346127 CCAAGATAGATGGTGAGTGATGGA 59.654 45.833 0.00 0.00 33.08 3.41
527 774 4.639334 CCAAGATAGATGGTGAGTGATGG 58.361 47.826 0.00 0.00 33.08 3.51
537 784 7.636150 AAATCTCAACAACCAAGATAGATGG 57.364 36.000 0.00 0.00 43.84 3.51
546 793 8.825745 GCTCAATTTAAAAATCTCAACAACCAA 58.174 29.630 0.00 0.00 0.00 3.67
547 794 8.203485 AGCTCAATTTAAAAATCTCAACAACCA 58.797 29.630 0.00 0.00 0.00 3.67
548 795 8.593492 AGCTCAATTTAAAAATCTCAACAACC 57.407 30.769 0.00 0.00 0.00 3.77
549 796 9.468532 AGAGCTCAATTTAAAAATCTCAACAAC 57.531 29.630 17.77 0.00 0.00 3.32
559 806 9.233649 TCCGGTTTATAGAGCTCAATTTAAAAA 57.766 29.630 17.77 3.68 0.00 1.94
560 807 8.795842 TCCGGTTTATAGAGCTCAATTTAAAA 57.204 30.769 17.77 4.71 0.00 1.52
561 808 8.795842 TTCCGGTTTATAGAGCTCAATTTAAA 57.204 30.769 17.77 10.69 0.00 1.52
562 809 8.795842 TTTCCGGTTTATAGAGCTCAATTTAA 57.204 30.769 17.77 5.15 0.00 1.52
563 810 8.262227 TCTTTCCGGTTTATAGAGCTCAATTTA 58.738 33.333 17.77 0.00 0.00 1.40
564 811 7.110155 TCTTTCCGGTTTATAGAGCTCAATTT 58.890 34.615 17.77 0.00 0.00 1.82
565 812 6.650120 TCTTTCCGGTTTATAGAGCTCAATT 58.350 36.000 17.77 2.24 0.00 2.32
566 813 6.235231 TCTTTCCGGTTTATAGAGCTCAAT 57.765 37.500 17.77 0.00 0.00 2.57
567 814 5.670792 TCTTTCCGGTTTATAGAGCTCAA 57.329 39.130 17.77 0.00 0.00 3.02
568 815 5.395324 CCTTCTTTCCGGTTTATAGAGCTCA 60.395 44.000 17.77 2.09 0.00 4.26
569 816 5.051153 CCTTCTTTCCGGTTTATAGAGCTC 58.949 45.833 5.27 5.27 0.00 4.09
570 817 4.141688 CCCTTCTTTCCGGTTTATAGAGCT 60.142 45.833 0.00 0.00 0.00 4.09
571 818 4.127907 CCCTTCTTTCCGGTTTATAGAGC 58.872 47.826 0.00 0.00 0.00 4.09
572 819 5.128991 ACTCCCTTCTTTCCGGTTTATAGAG 59.871 44.000 0.00 2.60 0.00 2.43
573 820 5.028131 ACTCCCTTCTTTCCGGTTTATAGA 58.972 41.667 0.00 0.00 0.00 1.98
574 821 5.354842 ACTCCCTTCTTTCCGGTTTATAG 57.645 43.478 0.00 0.00 0.00 1.31
575 822 8.591072 CATATACTCCCTTCTTTCCGGTTTATA 58.409 37.037 0.00 0.00 0.00 0.98
576 823 5.970501 ATACTCCCTTCTTTCCGGTTTAT 57.029 39.130 0.00 0.00 0.00 1.40
577 824 6.384886 ACATATACTCCCTTCTTTCCGGTTTA 59.615 38.462 0.00 0.00 0.00 2.01
578 825 5.191124 ACATATACTCCCTTCTTTCCGGTTT 59.809 40.000 0.00 0.00 0.00 3.27
579 826 4.720273 ACATATACTCCCTTCTTTCCGGTT 59.280 41.667 0.00 0.00 0.00 4.44
580 827 4.101119 CACATATACTCCCTTCTTTCCGGT 59.899 45.833 0.00 0.00 0.00 5.28
581 828 4.344102 TCACATATACTCCCTTCTTTCCGG 59.656 45.833 0.00 0.00 0.00 5.14
582 829 5.531122 TCACATATACTCCCTTCTTTCCG 57.469 43.478 0.00 0.00 0.00 4.30
583 830 5.760743 GCTTCACATATACTCCCTTCTTTCC 59.239 44.000 0.00 0.00 0.00 3.13
584 831 5.463724 CGCTTCACATATACTCCCTTCTTTC 59.536 44.000 0.00 0.00 0.00 2.62
585 832 5.360591 CGCTTCACATATACTCCCTTCTTT 58.639 41.667 0.00 0.00 0.00 2.52
586 833 4.740934 GCGCTTCACATATACTCCCTTCTT 60.741 45.833 0.00 0.00 0.00 2.52
587 834 3.243907 GCGCTTCACATATACTCCCTTCT 60.244 47.826 0.00 0.00 0.00 2.85
588 835 3.060602 GCGCTTCACATATACTCCCTTC 58.939 50.000 0.00 0.00 0.00 3.46
589 836 2.434336 TGCGCTTCACATATACTCCCTT 59.566 45.455 9.73 0.00 0.00 3.95
590 837 2.039418 TGCGCTTCACATATACTCCCT 58.961 47.619 9.73 0.00 0.00 4.20
591 838 2.526304 TGCGCTTCACATATACTCCC 57.474 50.000 9.73 0.00 0.00 4.30
592 839 3.433615 GGAATGCGCTTCACATATACTCC 59.566 47.826 9.73 0.00 35.41 3.85
607 854 0.677288 TATACAGACGGGGGAATGCG 59.323 55.000 0.00 0.00 0.00 4.73
673 920 5.409211 TCCGCGTAGTATTATTTTGTCACA 58.591 37.500 4.92 0.00 0.00 3.58
679 926 5.653507 TCACACTCCGCGTAGTATTATTTT 58.346 37.500 3.27 0.00 0.00 1.82
680 927 5.066893 TCTCACACTCCGCGTAGTATTATTT 59.933 40.000 3.27 0.00 0.00 1.40
683 930 3.534554 TCTCACACTCCGCGTAGTATTA 58.465 45.455 3.27 0.00 0.00 0.98
692 939 2.166664 AGTAGGATTTCTCACACTCCGC 59.833 50.000 0.00 0.00 32.87 5.54
732 979 1.153568 CGGTGCATCTCATGTCGGT 60.154 57.895 0.00 0.00 0.00 4.69
765 1012 4.797868 GCTGCATGTATAGAGATCGACATC 59.202 45.833 0.00 0.00 30.13 3.06
842 1101 1.134220 GTGAATGGAGGTTGGCCGATA 60.134 52.381 0.00 0.00 40.50 2.92
850 1109 1.303317 GCGTGGGTGAATGGAGGTT 60.303 57.895 0.00 0.00 0.00 3.50
883 1142 3.426568 GCGGTGCTGAGTTGGAGC 61.427 66.667 0.00 0.00 36.95 4.70
884 1143 1.739562 GAGCGGTGCTGAGTTGGAG 60.740 63.158 0.00 0.00 39.88 3.86
930 1189 1.497161 CTCTTCTTATCCCCGGGTGT 58.503 55.000 21.85 10.16 0.00 4.16
967 1245 4.884164 AGTATCTTGATTTGGTTAGCTGCC 59.116 41.667 0.00 0.00 0.00 4.85
997 1275 1.377725 CCTTGGCGTGCTCCATCTT 60.378 57.895 0.00 0.00 35.77 2.40
1057 1335 2.046023 CTTGGCCTGCGTGATGGA 60.046 61.111 3.32 0.00 0.00 3.41
1206 1484 2.033911 ATGTGGTGCGACATGGCA 59.966 55.556 0.00 0.00 41.45 4.92
1299 1577 1.366111 GCCGCGTGTGTATCAATGGT 61.366 55.000 4.92 0.00 0.00 3.55
1336 1614 0.944311 GCCAGATCACACACGACGTT 60.944 55.000 0.00 0.00 0.00 3.99
1338 1616 0.667487 AAGCCAGATCACACACGACG 60.667 55.000 0.00 0.00 0.00 5.12
1361 1639 1.924352 TCCTCATGGATGCATGGCA 59.076 52.632 24.85 7.79 44.86 4.92
1377 1655 5.728637 AAAGAACAGGGAAAATCACATCC 57.271 39.130 0.00 0.00 34.85 3.51
1428 1706 0.904511 CACAACACAAACACGAACGC 59.095 50.000 0.00 0.00 0.00 4.84
1463 1742 5.278364 CCGAGATAATTAAGCCAGACGTACT 60.278 44.000 0.00 0.00 0.00 2.73
1519 1798 0.874390 GAACACACACATGCATCCGT 59.126 50.000 0.00 0.00 0.00 4.69
1535 1814 7.923414 ACACACATAAATAGAGGAAAGGAAC 57.077 36.000 0.00 0.00 0.00 3.62
1560 1839 1.721691 TGAGGGGGTTTGGAATTGGAT 59.278 47.619 0.00 0.00 0.00 3.41
1564 1843 3.840078 CTGAATTGAGGGGGTTTGGAATT 59.160 43.478 0.00 0.00 0.00 2.17
1565 1844 3.077391 TCTGAATTGAGGGGGTTTGGAAT 59.923 43.478 0.00 0.00 0.00 3.01
1566 1845 2.448961 TCTGAATTGAGGGGGTTTGGAA 59.551 45.455 0.00 0.00 0.00 3.53
1567 1846 2.041620 CTCTGAATTGAGGGGGTTTGGA 59.958 50.000 0.00 0.00 0.00 3.53
1568 1847 2.450476 CTCTGAATTGAGGGGGTTTGG 58.550 52.381 0.00 0.00 0.00 3.28
1616 1897 9.442047 CTCTTACATATCAAGAACAAAAGTCCT 57.558 33.333 0.00 0.00 31.84 3.85
1634 1915 4.207955 TCGGACAGTAGATGCTCTTACAT 58.792 43.478 0.00 0.00 0.00 2.29
1652 1935 2.455960 ATATGGGGCCTCGGATCGGA 62.456 60.000 0.84 2.69 0.00 4.55
1653 1936 1.961180 GATATGGGGCCTCGGATCGG 61.961 65.000 0.84 0.00 0.00 4.18
1654 1937 1.517832 GATATGGGGCCTCGGATCG 59.482 63.158 0.84 0.00 0.00 3.69
1655 1938 1.908483 GGATATGGGGCCTCGGATC 59.092 63.158 0.84 5.23 0.00 3.36
1659 1942 4.394712 GGCGGATATGGGGCCTCG 62.395 72.222 0.84 0.00 43.52 4.63
1693 1976 0.108585 TCCAGGCAGTGACCAGAAAC 59.891 55.000 0.00 0.00 0.00 2.78
1696 1979 1.951209 TTATCCAGGCAGTGACCAGA 58.049 50.000 0.00 0.00 0.00 3.86
1698 1981 3.517296 TTTTTATCCAGGCAGTGACCA 57.483 42.857 0.00 0.00 0.00 4.02
1715 1998 1.746787 GTCCAGTTGGGTGTCGTTTTT 59.253 47.619 0.00 0.00 38.11 1.94
1768 2052 0.683179 GGTTGGGTATGAGGTTGCCC 60.683 60.000 0.00 0.00 41.42 5.36
1782 2066 3.117550 TGTCCATTCCAGATATGGGTTGG 60.118 47.826 17.59 17.59 42.32 3.77
1785 2069 3.723681 ACATGTCCATTCCAGATATGGGT 59.276 43.478 6.52 0.00 42.32 4.51
1807 2091 4.492160 GGCGCGTCAGATCCGTCA 62.492 66.667 5.47 0.00 0.00 4.35
1839 2123 1.004918 GGATGGGCTTATCCGACGG 60.005 63.158 7.84 7.84 37.48 4.79
1849 2133 1.690219 GAGGACGTCATGGATGGGCT 61.690 60.000 18.91 0.99 0.00 5.19
1882 2166 1.405933 GCCGTACGGGTGGAGTATTTT 60.406 52.381 33.98 0.00 38.44 1.82
1884 2168 0.971959 TGCCGTACGGGTGGAGTATT 60.972 55.000 33.98 0.00 38.44 1.89
1992 2288 1.364626 GAGCACTGCCCAGTTGATCG 61.365 60.000 0.00 0.00 40.20 3.69
2006 2302 4.459089 GTCCTCCCTGGCGAGCAC 62.459 72.222 6.66 0.00 35.26 4.40
2007 2303 4.704103 AGTCCTCCCTGGCGAGCA 62.704 66.667 6.66 0.00 35.26 4.26
2082 2378 2.146724 CCGCCCCTATCCATCCACA 61.147 63.158 0.00 0.00 0.00 4.17
2125 2421 4.106925 CTGCTCCTCTGGGCCACC 62.107 72.222 0.00 0.00 37.24 4.61
2177 2473 2.658593 CTAATCGGGCGCGGACTG 60.659 66.667 23.74 7.93 0.00 3.51
2178 2474 3.912907 CCTAATCGGGCGCGGACT 61.913 66.667 23.74 10.26 0.00 3.85
2188 2484 0.872021 GTCACTCTGCCGCCTAATCG 60.872 60.000 0.00 0.00 0.00 3.34
2195 2491 2.740055 CTGTGGTCACTCTGCCGC 60.740 66.667 2.66 0.00 35.93 6.53
2202 2498 2.822637 CCTGGTGCCTGTGGTCACT 61.823 63.158 2.66 0.00 32.93 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.