Multiple sequence alignment - TraesCS7D01G037900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G037900 chr7D 100.000 2650 0 0 1 2650 19330419 19327770 0.000000e+00 4894.0
1 TraesCS7D01G037900 chr7D 90.505 1506 130 10 1151 2649 19208898 19207399 0.000000e+00 1977.0
2 TraesCS7D01G037900 chr7D 86.343 864 72 14 343 1167 19209773 19208917 0.000000e+00 900.0
3 TraesCS7D01G037900 chr7D 86.632 389 31 9 398 768 19283373 19282988 6.830000e-111 411.0
4 TraesCS7D01G037900 chr7D 88.344 163 19 0 3 165 518567826 518567988 2.080000e-46 196.0
5 TraesCS7D01G037900 chr4A 87.573 2229 219 21 456 2649 713728150 713730355 0.000000e+00 2529.0
6 TraesCS7D01G037900 chr4A 100.000 31 0 0 427 457 713728106 713728136 1.020000e-04 58.4
7 TraesCS7D01G037900 chr7A 86.938 2312 226 43 398 2649 19706769 19704474 0.000000e+00 2527.0
8 TraesCS7D01G037900 chr3A 85.890 163 22 1 1 162 11589919 11590081 3.510000e-39 172.0
9 TraesCS7D01G037900 chr6B 94.444 72 3 1 1 72 157796815 157796885 2.790000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G037900 chr7D 19327770 19330419 2649 True 4894.0 4894 100.0000 1 2650 1 chr7D.!!$R2 2649
1 TraesCS7D01G037900 chr7D 19207399 19209773 2374 True 1438.5 1977 88.4240 343 2649 2 chr7D.!!$R3 2306
2 TraesCS7D01G037900 chr4A 713728106 713730355 2249 False 1293.7 2529 93.7865 427 2649 2 chr4A.!!$F1 2222
3 TraesCS7D01G037900 chr7A 19704474 19706769 2295 True 2527.0 2527 86.9380 398 2649 1 chr7A.!!$R1 2251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 836 0.176449 GCAGGAAAATGGGTGATGGC 59.824 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 1970 0.035056 GGGGTAGTCACTGCAATGCT 60.035 55.0 6.82 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.302855 CGACACGCAGTTTAGAAGATATG 57.697 43.478 0.00 0.00 41.61 1.78
23 24 4.798907 CGACACGCAGTTTAGAAGATATGT 59.201 41.667 0.00 0.00 41.61 2.29
24 25 5.288712 CGACACGCAGTTTAGAAGATATGTT 59.711 40.000 0.00 0.00 41.61 2.71
25 26 6.183360 CGACACGCAGTTTAGAAGATATGTTT 60.183 38.462 0.00 0.00 41.61 2.83
26 27 7.435068 ACACGCAGTTTAGAAGATATGTTTT 57.565 32.000 0.00 0.00 41.61 2.43
27 28 7.871853 ACACGCAGTTTAGAAGATATGTTTTT 58.128 30.769 0.00 0.00 41.61 1.94
57 58 9.497030 AATTTCGAAAACCAAAAATTAAAGCAC 57.503 25.926 15.66 0.00 31.43 4.40
58 59 7.596749 TTCGAAAACCAAAAATTAAAGCACA 57.403 28.000 0.00 0.00 0.00 4.57
59 60 7.596749 TCGAAAACCAAAAATTAAAGCACAA 57.403 28.000 0.00 0.00 0.00 3.33
60 61 8.029642 TCGAAAACCAAAAATTAAAGCACAAA 57.970 26.923 0.00 0.00 0.00 2.83
61 62 8.171840 TCGAAAACCAAAAATTAAAGCACAAAG 58.828 29.630 0.00 0.00 0.00 2.77
62 63 8.171840 CGAAAACCAAAAATTAAAGCACAAAGA 58.828 29.630 0.00 0.00 0.00 2.52
63 64 9.833182 GAAAACCAAAAATTAAAGCACAAAGAA 57.167 25.926 0.00 0.00 0.00 2.52
64 65 9.619316 AAAACCAAAAATTAAAGCACAAAGAAC 57.381 25.926 0.00 0.00 0.00 3.01
65 66 6.999456 ACCAAAAATTAAAGCACAAAGAACG 58.001 32.000 0.00 0.00 0.00 3.95
66 67 6.814146 ACCAAAAATTAAAGCACAAAGAACGA 59.186 30.769 0.00 0.00 0.00 3.85
67 68 7.332182 ACCAAAAATTAAAGCACAAAGAACGAA 59.668 29.630 0.00 0.00 0.00 3.85
68 69 7.634432 CCAAAAATTAAAGCACAAAGAACGAAC 59.366 33.333 0.00 0.00 0.00 3.95
69 70 7.820044 AAAATTAAAGCACAAAGAACGAACA 57.180 28.000 0.00 0.00 0.00 3.18
70 71 8.419076 AAAATTAAAGCACAAAGAACGAACAT 57.581 26.923 0.00 0.00 0.00 2.71
71 72 6.991485 ATTAAAGCACAAAGAACGAACATG 57.009 33.333 0.00 0.00 0.00 3.21
72 73 4.630894 AAAGCACAAAGAACGAACATGA 57.369 36.364 0.00 0.00 0.00 3.07
73 74 3.885484 AGCACAAAGAACGAACATGAG 57.115 42.857 0.00 0.00 0.00 2.90
74 75 2.549754 AGCACAAAGAACGAACATGAGG 59.450 45.455 0.00 0.00 0.00 3.86
75 76 2.548057 GCACAAAGAACGAACATGAGGA 59.452 45.455 0.00 0.00 0.00 3.71
76 77 3.003275 GCACAAAGAACGAACATGAGGAA 59.997 43.478 0.00 0.00 0.00 3.36
77 78 4.320494 GCACAAAGAACGAACATGAGGAAT 60.320 41.667 0.00 0.00 0.00 3.01
78 79 5.106712 GCACAAAGAACGAACATGAGGAATA 60.107 40.000 0.00 0.00 0.00 1.75
79 80 6.403636 GCACAAAGAACGAACATGAGGAATAT 60.404 38.462 0.00 0.00 0.00 1.28
80 81 7.530010 CACAAAGAACGAACATGAGGAATATT 58.470 34.615 0.00 0.00 0.00 1.28
81 82 8.664798 CACAAAGAACGAACATGAGGAATATTA 58.335 33.333 0.00 0.00 0.00 0.98
82 83 9.226606 ACAAAGAACGAACATGAGGAATATTAA 57.773 29.630 0.00 0.00 0.00 1.40
85 86 7.865707 AGAACGAACATGAGGAATATTAATGC 58.134 34.615 0.00 0.00 0.00 3.56
86 87 7.498900 AGAACGAACATGAGGAATATTAATGCA 59.501 33.333 0.00 0.00 0.00 3.96
87 88 7.194607 ACGAACATGAGGAATATTAATGCAG 57.805 36.000 0.00 0.00 0.00 4.41
88 89 6.767902 ACGAACATGAGGAATATTAATGCAGT 59.232 34.615 0.00 0.00 0.00 4.40
89 90 7.073883 CGAACATGAGGAATATTAATGCAGTG 58.926 38.462 0.00 0.00 0.00 3.66
90 91 6.889301 ACATGAGGAATATTAATGCAGTGG 57.111 37.500 0.00 0.00 0.00 4.00
91 92 5.242393 ACATGAGGAATATTAATGCAGTGGC 59.758 40.000 0.00 0.00 41.68 5.01
102 103 2.745728 GCAGTGGCATGCAAACATC 58.254 52.632 21.36 8.90 45.77 3.06
103 104 0.738412 GCAGTGGCATGCAAACATCC 60.738 55.000 21.36 0.00 45.77 3.51
104 105 0.604073 CAGTGGCATGCAAACATCCA 59.396 50.000 21.36 2.93 32.87 3.41
105 106 1.206132 CAGTGGCATGCAAACATCCAT 59.794 47.619 21.36 0.00 36.51 3.41
106 107 1.479323 AGTGGCATGCAAACATCCATC 59.521 47.619 21.36 0.00 36.51 3.51
107 108 0.456628 TGGCATGCAAACATCCATCG 59.543 50.000 21.36 0.00 32.87 3.84
108 109 0.457035 GGCATGCAAACATCCATCGT 59.543 50.000 21.36 0.00 32.87 3.73
109 110 1.552226 GCATGCAAACATCCATCGTG 58.448 50.000 14.21 0.00 32.87 4.35
110 111 1.135315 GCATGCAAACATCCATCGTGT 60.135 47.619 14.21 0.00 32.87 4.49
111 112 2.521996 CATGCAAACATCCATCGTGTG 58.478 47.619 0.00 0.00 32.87 3.82
112 113 1.889545 TGCAAACATCCATCGTGTGA 58.110 45.000 0.00 0.00 0.00 3.58
113 114 1.805943 TGCAAACATCCATCGTGTGAG 59.194 47.619 0.00 0.00 0.00 3.51
114 115 2.076100 GCAAACATCCATCGTGTGAGA 58.924 47.619 0.00 0.00 0.00 3.27
115 116 2.483877 GCAAACATCCATCGTGTGAGAA 59.516 45.455 0.00 0.00 0.00 2.87
116 117 3.058293 GCAAACATCCATCGTGTGAGAAA 60.058 43.478 0.00 0.00 0.00 2.52
117 118 4.556501 GCAAACATCCATCGTGTGAGAAAA 60.557 41.667 0.00 0.00 0.00 2.29
118 119 5.518812 CAAACATCCATCGTGTGAGAAAAA 58.481 37.500 0.00 0.00 0.00 1.94
234 235 2.603953 GCTAGACGCGTCCTTAAAACT 58.396 47.619 34.08 16.48 0.00 2.66
235 236 3.762779 GCTAGACGCGTCCTTAAAACTA 58.237 45.455 34.08 16.72 0.00 2.24
236 237 4.357996 GCTAGACGCGTCCTTAAAACTAT 58.642 43.478 34.08 15.00 0.00 2.12
237 238 4.206609 GCTAGACGCGTCCTTAAAACTATG 59.793 45.833 34.08 12.49 0.00 2.23
238 239 3.518590 AGACGCGTCCTTAAAACTATGG 58.481 45.455 34.08 0.00 0.00 2.74
239 240 3.056322 AGACGCGTCCTTAAAACTATGGT 60.056 43.478 34.08 8.86 0.00 3.55
240 241 3.256558 ACGCGTCCTTAAAACTATGGTC 58.743 45.455 5.58 0.00 0.00 4.02
241 242 3.056322 ACGCGTCCTTAAAACTATGGTCT 60.056 43.478 5.58 0.00 0.00 3.85
242 243 3.306166 CGCGTCCTTAAAACTATGGTCTG 59.694 47.826 0.00 0.00 0.00 3.51
243 244 4.501071 GCGTCCTTAAAACTATGGTCTGA 58.499 43.478 0.00 0.00 0.00 3.27
244 245 4.567159 GCGTCCTTAAAACTATGGTCTGAG 59.433 45.833 0.00 0.00 0.00 3.35
245 246 5.109903 CGTCCTTAAAACTATGGTCTGAGG 58.890 45.833 0.00 0.00 0.00 3.86
246 247 5.429130 GTCCTTAAAACTATGGTCTGAGGG 58.571 45.833 3.38 0.00 0.00 4.30
247 248 4.080526 TCCTTAAAACTATGGTCTGAGGGC 60.081 45.833 3.38 0.00 0.00 5.19
248 249 2.403252 AAAACTATGGTCTGAGGGCG 57.597 50.000 0.00 0.00 0.00 6.13
249 250 0.541863 AAACTATGGTCTGAGGGCGG 59.458 55.000 0.00 0.00 0.00 6.13
250 251 0.325296 AACTATGGTCTGAGGGCGGA 60.325 55.000 0.00 0.00 0.00 5.54
263 264 4.357947 GCGGACACGACCAGCTCA 62.358 66.667 0.00 0.00 44.60 4.26
264 265 2.338620 CGGACACGACCAGCTCAA 59.661 61.111 0.00 0.00 44.60 3.02
265 266 2.022129 CGGACACGACCAGCTCAAC 61.022 63.158 0.00 0.00 44.60 3.18
266 267 2.022129 GGACACGACCAGCTCAACG 61.022 63.158 0.00 0.00 0.00 4.10
267 268 2.022129 GACACGACCAGCTCAACGG 61.022 63.158 0.00 0.00 0.00 4.44
268 269 2.029073 CACGACCAGCTCAACGGT 59.971 61.111 0.00 0.00 38.56 4.83
269 270 2.029073 ACGACCAGCTCAACGGTG 59.971 61.111 0.00 0.00 40.77 4.94
275 276 3.123674 CAGCTCAACGGTGGACTAC 57.876 57.895 0.00 0.00 37.47 2.73
276 277 0.603569 CAGCTCAACGGTGGACTACT 59.396 55.000 0.00 0.00 37.47 2.57
277 278 0.889306 AGCTCAACGGTGGACTACTC 59.111 55.000 0.00 0.00 0.00 2.59
278 279 0.601558 GCTCAACGGTGGACTACTCA 59.398 55.000 0.00 0.00 0.00 3.41
279 280 1.000506 GCTCAACGGTGGACTACTCAA 59.999 52.381 0.00 0.00 0.00 3.02
280 281 2.927014 GCTCAACGGTGGACTACTCAAG 60.927 54.545 0.00 0.00 0.00 3.02
281 282 1.000506 TCAACGGTGGACTACTCAAGC 59.999 52.381 0.00 0.00 0.00 4.01
282 283 0.320697 AACGGTGGACTACTCAAGCC 59.679 55.000 0.00 0.00 0.00 4.35
283 284 0.542232 ACGGTGGACTACTCAAGCCT 60.542 55.000 0.00 0.00 0.00 4.58
284 285 1.272313 ACGGTGGACTACTCAAGCCTA 60.272 52.381 0.00 0.00 0.00 3.93
285 286 2.032620 CGGTGGACTACTCAAGCCTAT 58.967 52.381 0.00 0.00 0.00 2.57
286 287 2.034812 CGGTGGACTACTCAAGCCTATC 59.965 54.545 0.00 0.00 0.00 2.08
287 288 2.365941 GGTGGACTACTCAAGCCTATCC 59.634 54.545 0.00 0.00 0.00 2.59
288 289 3.301274 GTGGACTACTCAAGCCTATCCT 58.699 50.000 0.00 0.00 0.00 3.24
289 290 3.068873 GTGGACTACTCAAGCCTATCCTG 59.931 52.174 0.00 0.00 0.00 3.86
290 291 3.052869 TGGACTACTCAAGCCTATCCTGA 60.053 47.826 0.00 0.00 0.00 3.86
291 292 3.572255 GGACTACTCAAGCCTATCCTGAG 59.428 52.174 0.00 0.00 0.00 3.35
292 293 2.962421 ACTACTCAAGCCTATCCTGAGC 59.038 50.000 0.00 0.00 0.00 4.26
293 294 1.127343 ACTCAAGCCTATCCTGAGCC 58.873 55.000 0.00 0.00 0.00 4.70
294 295 0.396060 CTCAAGCCTATCCTGAGCCC 59.604 60.000 0.00 0.00 0.00 5.19
295 296 1.070445 CAAGCCTATCCTGAGCCCG 59.930 63.158 0.00 0.00 0.00 6.13
296 297 2.812619 AAGCCTATCCTGAGCCCGC 61.813 63.158 0.00 0.00 0.00 6.13
297 298 4.321966 GCCTATCCTGAGCCCGCC 62.322 72.222 0.00 0.00 0.00 6.13
298 299 3.631046 CCTATCCTGAGCCCGCCC 61.631 72.222 0.00 0.00 0.00 6.13
299 300 2.844362 CTATCCTGAGCCCGCCCA 60.844 66.667 0.00 0.00 0.00 5.36
300 301 2.366301 TATCCTGAGCCCGCCCAA 60.366 61.111 0.00 0.00 0.00 4.12
301 302 2.388890 CTATCCTGAGCCCGCCCAAG 62.389 65.000 0.00 0.00 0.00 3.61
303 304 4.785453 CCTGAGCCCGCCCAAGTC 62.785 72.222 0.00 0.00 0.00 3.01
304 305 4.785453 CTGAGCCCGCCCAAGTCC 62.785 72.222 0.00 0.00 0.00 3.85
308 309 4.660938 GCCCGCCCAAGTCCACTT 62.661 66.667 0.00 0.00 36.45 3.16
309 310 2.115266 CCCGCCCAAGTCCACTTT 59.885 61.111 0.00 0.00 33.11 2.66
310 311 1.530655 CCCGCCCAAGTCCACTTTT 60.531 57.895 0.00 0.00 33.11 2.27
311 312 1.524008 CCCGCCCAAGTCCACTTTTC 61.524 60.000 0.00 0.00 33.11 2.29
312 313 1.524008 CCGCCCAAGTCCACTTTTCC 61.524 60.000 0.00 0.00 33.11 3.13
313 314 0.821711 CGCCCAAGTCCACTTTTCCA 60.822 55.000 0.00 0.00 33.11 3.53
314 315 1.632589 GCCCAAGTCCACTTTTCCAT 58.367 50.000 0.00 0.00 33.11 3.41
315 316 2.802719 GCCCAAGTCCACTTTTCCATA 58.197 47.619 0.00 0.00 33.11 2.74
316 317 2.492088 GCCCAAGTCCACTTTTCCATAC 59.508 50.000 0.00 0.00 33.11 2.39
317 318 3.814316 GCCCAAGTCCACTTTTCCATACT 60.814 47.826 0.00 0.00 33.11 2.12
318 319 4.010349 CCCAAGTCCACTTTTCCATACTC 58.990 47.826 0.00 0.00 33.11 2.59
319 320 4.010349 CCAAGTCCACTTTTCCATACTCC 58.990 47.826 0.00 0.00 33.11 3.85
320 321 4.263506 CCAAGTCCACTTTTCCATACTCCT 60.264 45.833 0.00 0.00 33.11 3.69
321 322 5.316987 CAAGTCCACTTTTCCATACTCCTT 58.683 41.667 0.00 0.00 33.11 3.36
322 323 4.911390 AGTCCACTTTTCCATACTCCTTG 58.089 43.478 0.00 0.00 0.00 3.61
323 324 3.440522 GTCCACTTTTCCATACTCCTTGC 59.559 47.826 0.00 0.00 0.00 4.01
324 325 2.755103 CCACTTTTCCATACTCCTTGCC 59.245 50.000 0.00 0.00 0.00 4.52
325 326 2.755103 CACTTTTCCATACTCCTTGCCC 59.245 50.000 0.00 0.00 0.00 5.36
326 327 2.291605 ACTTTTCCATACTCCTTGCCCC 60.292 50.000 0.00 0.00 0.00 5.80
327 328 0.629058 TTTCCATACTCCTTGCCCCC 59.371 55.000 0.00 0.00 0.00 5.40
328 329 1.632018 TTCCATACTCCTTGCCCCCG 61.632 60.000 0.00 0.00 0.00 5.73
329 330 2.375345 CCATACTCCTTGCCCCCGT 61.375 63.158 0.00 0.00 0.00 5.28
330 331 1.146263 CATACTCCTTGCCCCCGTC 59.854 63.158 0.00 0.00 0.00 4.79
331 332 1.003051 ATACTCCTTGCCCCCGTCT 59.997 57.895 0.00 0.00 0.00 4.18
332 333 1.049289 ATACTCCTTGCCCCCGTCTC 61.049 60.000 0.00 0.00 0.00 3.36
333 334 3.787001 CTCCTTGCCCCCGTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
334 335 4.332543 TCCTTGCCCCCGTCTCCT 62.333 66.667 0.00 0.00 0.00 3.69
335 336 3.787001 CCTTGCCCCCGTCTCCTC 61.787 72.222 0.00 0.00 0.00 3.71
336 337 3.787001 CTTGCCCCCGTCTCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
337 338 4.332543 TTGCCCCCGTCTCCTCCT 62.333 66.667 0.00 0.00 0.00 3.69
338 339 4.779733 TGCCCCCGTCTCCTCCTC 62.780 72.222 0.00 0.00 0.00 3.71
363 364 0.824109 CCAGATTCACCGCAGACCTA 59.176 55.000 0.00 0.00 0.00 3.08
366 367 2.093973 CAGATTCACCGCAGACCTACTT 60.094 50.000 0.00 0.00 0.00 2.24
369 370 0.541063 TCACCGCAGACCTACTTGGA 60.541 55.000 0.00 0.00 39.71 3.53
371 372 1.153549 CCGCAGACCTACTTGGAGC 60.154 63.158 0.00 0.00 39.71 4.70
464 493 1.522668 GTGTTCACCATGCTGCTGTA 58.477 50.000 0.00 0.00 0.00 2.74
466 495 2.096496 GTGTTCACCATGCTGCTGTATC 59.904 50.000 0.00 0.00 0.00 2.24
494 523 1.994507 CTGTCAGTACCGAGCCTCCG 61.995 65.000 0.00 0.00 0.00 4.63
513 542 3.994853 GCTTGCACCAGTTGGCCC 61.995 66.667 0.00 0.00 39.32 5.80
514 543 2.521465 CTTGCACCAGTTGGCCCA 60.521 61.111 0.00 0.00 39.32 5.36
533 562 2.125912 CGAAGCCGTCTCCACCTG 60.126 66.667 0.00 0.00 0.00 4.00
535 568 2.925170 AAGCCGTCTCCACCTGCT 60.925 61.111 0.00 0.00 0.00 4.24
595 629 3.117745 TCTCATCCTGGTTGATGTGGAT 58.882 45.455 7.86 0.00 42.24 3.41
623 657 4.400961 GCTTCTCCAGGCCGCTGT 62.401 66.667 0.00 0.00 0.00 4.40
653 687 1.069906 GCACACCACTTGTTCGATGAC 60.070 52.381 0.00 0.00 35.67 3.06
657 691 1.806542 ACCACTTGTTCGATGACATGC 59.193 47.619 0.00 0.00 0.00 4.06
667 701 4.556942 TCGATGACATGCATGGAAATTC 57.443 40.909 29.41 17.77 38.56 2.17
676 735 1.401905 GCATGGAAATTCGAGGTGGAC 59.598 52.381 0.00 0.00 0.00 4.02
692 751 1.065053 TGGACAAATGGTGTATCCCCG 60.065 52.381 0.00 0.00 41.96 5.73
759 818 1.080772 TGATCCACACAGACGTCGC 60.081 57.895 10.46 0.00 0.00 5.19
777 836 0.176449 GCAGGAAAATGGGTGATGGC 59.824 55.000 0.00 0.00 0.00 4.40
838 909 7.337938 TGTAATGCAAGGAAGTAGAATGATCA 58.662 34.615 0.00 0.00 0.00 2.92
879 950 2.162408 GAGGGACCTTCAGCAAAAATCG 59.838 50.000 0.00 0.00 0.00 3.34
883 954 1.541588 ACCTTCAGCAAAAATCGCTCC 59.458 47.619 0.00 0.00 37.72 4.70
895 966 0.825840 ATCGCTCCTGCTCTCCCTAC 60.826 60.000 0.00 0.00 36.97 3.18
929 1008 1.491668 TATATGGCACTCACCCGTGT 58.508 50.000 0.00 0.00 37.24 4.49
949 1028 5.573282 CGTGTATTCTTCAATTCTCTCGTGT 59.427 40.000 0.00 0.00 0.00 4.49
954 1033 3.494626 TCTTCAATTCTCTCGTGTGCAAC 59.505 43.478 0.00 0.00 37.35 4.17
971 1050 1.587946 CAACGCAGCAAAACCAACTTC 59.412 47.619 0.00 0.00 0.00 3.01
1031 1118 4.202503 GGAACATGACCTCCATATGACCAT 60.203 45.833 3.65 0.00 33.31 3.55
1114 1201 3.368248 AGCATCCACAATTGGTATTGCT 58.632 40.909 17.26 17.26 44.05 3.91
1137 1224 2.371841 ACAACCTTGACATACCTGCTGA 59.628 45.455 0.00 0.00 0.00 4.26
1215 1339 8.409371 CCTTCCATTTATCTTAGGAAAAAGCTC 58.591 37.037 0.00 0.00 39.47 4.09
1262 1386 5.184479 CCAGAAGATTGTGATGGAAATGTGT 59.816 40.000 0.00 0.00 32.55 3.72
1267 1391 1.612950 TGTGATGGAAATGTGTGTGGC 59.387 47.619 0.00 0.00 0.00 5.01
1271 1395 3.008923 TGATGGAAATGTGTGTGGCTCTA 59.991 43.478 0.00 0.00 0.00 2.43
1280 1404 0.466124 GTGTGGCTCTACTCCATCCC 59.534 60.000 0.00 0.00 35.81 3.85
1289 1413 2.430694 TCTACTCCATCCCACAATGACG 59.569 50.000 0.00 0.00 0.00 4.35
1475 1602 4.750098 TCACTTCAACGATTCAAGAACTCC 59.250 41.667 0.00 0.00 0.00 3.85
1482 1609 5.808042 ACGATTCAAGAACTCCATTGATG 57.192 39.130 0.00 0.00 35.47 3.07
1546 1673 2.300437 GGTTGCCCAGCTCCTACTATAG 59.700 54.545 0.00 0.00 0.00 1.31
1553 1680 5.007682 CCCAGCTCCTACTATAGAAGACTC 58.992 50.000 6.78 0.00 0.00 3.36
1561 1688 6.065374 CCTACTATAGAAGACTCTTGCCTCA 58.935 44.000 6.78 0.00 32.70 3.86
1563 1690 3.791973 ATAGAAGACTCTTGCCTCACG 57.208 47.619 0.00 0.00 32.70 4.35
1592 1719 8.484575 AGTGTTCATCTCTTTCACTCATCATAT 58.515 33.333 0.00 0.00 34.87 1.78
1601 1728 3.473625 TCACTCATCATATTGCCTGCAG 58.526 45.455 6.78 6.78 0.00 4.41
1628 1755 0.175073 CTCGGGTACTAGCACCAACC 59.825 60.000 14.27 2.78 40.65 3.77
1630 1757 0.108329 CGGGTACTAGCACCAACCAG 60.108 60.000 14.27 0.33 40.65 4.00
1650 1777 4.637534 CCAGACACAGCTTACTTGCATAAT 59.362 41.667 0.00 0.00 34.99 1.28
1655 1782 8.792633 AGACACAGCTTACTTGCATAATTTTAA 58.207 29.630 0.00 0.00 34.99 1.52
1677 1806 8.746052 TTAATTTTAATCATCCACATCGGTCT 57.254 30.769 0.00 0.00 35.57 3.85
1686 1815 9.436957 AATCATCCACATCGGTCTATTTAATAC 57.563 33.333 0.00 0.00 35.57 1.89
1689 1818 7.356089 TCCACATCGGTCTATTTAATACTGT 57.644 36.000 0.00 0.00 35.57 3.55
1692 1822 9.537192 CCACATCGGTCTATTTAATACTGTAAA 57.463 33.333 0.00 0.00 0.00 2.01
1721 1851 7.129457 TGAATTCATGGAGCTAAGTAGACAT 57.871 36.000 3.38 0.00 0.00 3.06
1729 1860 4.876679 GGAGCTAAGTAGACATCCCAAAAC 59.123 45.833 0.00 0.00 0.00 2.43
1733 1865 6.375455 AGCTAAGTAGACATCCCAAAACAATG 59.625 38.462 0.00 0.00 0.00 2.82
1742 1874 7.961325 ACATCCCAAAACAATGTCAATTTAC 57.039 32.000 0.00 0.00 0.00 2.01
1789 1921 4.511826 GCTACATGTTATACACAGCTTCCC 59.488 45.833 2.30 0.00 39.40 3.97
1807 1939 1.352352 CCCGATGGATTAGAGGGCAAT 59.648 52.381 0.00 0.00 35.09 3.56
1821 1953 6.521527 AGAGGGCAATAAAAGACCATATCT 57.478 37.500 0.00 0.00 40.46 1.98
1822 1954 6.302269 AGAGGGCAATAAAAGACCATATCTG 58.698 40.000 0.00 0.00 37.88 2.90
1833 1965 8.517062 AAAAGACCATATCTGAATGAAGGAAG 57.483 34.615 0.00 0.00 37.88 3.46
1838 1970 6.002082 CCATATCTGAATGAAGGAAGCATCA 58.998 40.000 0.00 0.00 0.00 3.07
1845 1977 1.475280 TGAAGGAAGCATCAGCATTGC 59.525 47.619 0.00 0.00 45.49 3.56
1848 1980 0.815734 GGAAGCATCAGCATTGCAGT 59.184 50.000 11.91 0.00 45.49 4.40
1863 1995 1.489560 GCAGTGACTACCCCACCCTT 61.490 60.000 0.00 0.00 35.23 3.95
1924 2056 1.301716 GTTGTTCCTCCAGCTGCGA 60.302 57.895 8.66 6.46 0.00 5.10
1925 2057 0.674895 GTTGTTCCTCCAGCTGCGAT 60.675 55.000 8.66 0.00 0.00 4.58
1943 2075 3.182572 GCGATATGAAGAACTAGTTGCCG 59.817 47.826 14.14 5.68 0.00 5.69
2017 2149 3.106672 CGCAAGTCTCAACCGTCTATAC 58.893 50.000 0.00 0.00 0.00 1.47
2031 2163 5.240713 CGTCTATACGGGTTACTTTCACT 57.759 43.478 0.00 0.00 45.50 3.41
2032 2164 5.644644 CGTCTATACGGGTTACTTTCACTT 58.355 41.667 0.00 0.00 45.50 3.16
2053 2185 7.768582 TCACTTTCTGTACAATCTCTTGTTGAA 59.231 33.333 0.00 0.00 43.05 2.69
2119 2251 7.949962 GCGGAAACTAAATTTTGATTAAAGCAC 59.050 33.333 6.63 0.00 0.00 4.40
2129 2261 6.631971 TTTGATTAAAGCACACTGATCACA 57.368 33.333 0.00 0.00 0.00 3.58
2136 2268 1.527034 CACACTGATCACAACAGGGG 58.473 55.000 0.00 0.00 42.34 4.79
2176 2308 5.033522 AGCTGGACTCCTTTAATCTACCTT 58.966 41.667 0.00 0.00 0.00 3.50
2181 2313 7.618137 TGGACTCCTTTAATCTACCTTTGTAC 58.382 38.462 0.00 0.00 0.00 2.90
2190 2322 1.208535 CTACCTTTGTACGGGCCATCA 59.791 52.381 4.39 0.00 0.00 3.07
2214 2346 3.181434 TGGATGAAGTTAAGGCAGTGGTT 60.181 43.478 0.00 0.00 0.00 3.67
2217 2349 3.476552 TGAAGTTAAGGCAGTGGTTGAG 58.523 45.455 0.00 0.00 0.00 3.02
2219 2351 0.517316 GTTAAGGCAGTGGTTGAGCG 59.483 55.000 0.00 0.00 0.00 5.03
2235 2367 4.308526 CGGAGCCAGCAGTTTGAT 57.691 55.556 0.00 0.00 0.00 2.57
2236 2368 3.458872 CGGAGCCAGCAGTTTGATA 57.541 52.632 0.00 0.00 0.00 2.15
2238 2370 2.292267 CGGAGCCAGCAGTTTGATATT 58.708 47.619 0.00 0.00 0.00 1.28
2240 2372 3.496130 CGGAGCCAGCAGTTTGATATTAG 59.504 47.826 0.00 0.00 0.00 1.73
2262 2394 4.051922 GTCACATCAAACTGTTCGAGACT 58.948 43.478 0.00 0.00 0.00 3.24
2265 2397 5.690409 TCACATCAAACTGTTCGAGACTAAC 59.310 40.000 0.00 0.00 0.00 2.34
2310 2442 0.795735 GCAATGATGTGCACGACAGC 60.796 55.000 13.13 11.13 44.29 4.40
2322 2454 1.237285 ACGACAGCATCCAAAGTGGC 61.237 55.000 0.00 0.00 37.47 5.01
2325 2457 2.368439 GACAGCATCCAAAGTGGCATA 58.632 47.619 0.00 0.00 37.47 3.14
2329 2461 3.056678 CAGCATCCAAAGTGGCATAAACA 60.057 43.478 0.00 0.00 37.47 2.83
2334 2466 2.529151 CAAAGTGGCATAAACATCGCC 58.471 47.619 0.00 0.00 46.43 5.54
2343 2475 3.243035 GCATAAACATCGCCATGTGCTTA 60.243 43.478 0.00 0.00 42.89 3.09
2382 2514 3.070878 CCCTGTTTACAAGCCATTTTGGT 59.929 43.478 0.00 0.00 40.46 3.67
2418 2550 5.064452 CGATGAGCTCTTCAATAAGTTTGCT 59.936 40.000 24.56 0.00 39.77 3.91
2430 2562 3.363788 AAGTTTGCTTATAACGTCGCG 57.636 42.857 0.00 0.00 32.27 5.87
2433 2565 5.570973 TAAGTTTGCTTATAACGTCGCGTTA 59.429 36.000 21.03 21.03 43.83 3.18
2441 2573 1.359833 ACGTCGCGTTACACCTTGA 59.640 52.632 5.77 0.00 36.35 3.02
2445 2577 1.593933 GTCGCGTTACACCTTGACAAA 59.406 47.619 5.77 0.00 0.00 2.83
2478 2610 7.012515 ACCAAGTACTCTGTCATTACTCTATCG 59.987 40.741 0.00 0.00 0.00 2.92
2479 2611 7.012515 CCAAGTACTCTGTCATTACTCTATCGT 59.987 40.741 0.00 0.00 0.00 3.73
2481 2613 9.610705 AAGTACTCTGTCATTACTCTATCGTTA 57.389 33.333 0.00 0.00 0.00 3.18
2482 2614 9.610705 AGTACTCTGTCATTACTCTATCGTTAA 57.389 33.333 0.00 0.00 0.00 2.01
2507 2639 5.998454 AAAAAGATGAGGCATAGACGATG 57.002 39.130 0.00 0.00 38.73 3.84
2512 2644 1.824852 TGAGGCATAGACGATGTGTGT 59.175 47.619 0.00 0.00 37.90 3.72
2528 2660 6.183359 CGATGTGTGTTCTTGCAATTTATGTG 60.183 38.462 0.00 0.00 0.00 3.21
2538 2670 7.600960 TCTTGCAATTTATGTGTTTATCAGCA 58.399 30.769 0.00 0.00 0.00 4.41
2544 2676 2.857186 TGTGTTTATCAGCAGCCTCA 57.143 45.000 0.00 0.00 0.00 3.86
2549 2681 4.919754 GTGTTTATCAGCAGCCTCAAAAAG 59.080 41.667 0.00 0.00 0.00 2.27
2553 2685 6.683974 TTATCAGCAGCCTCAAAAAGTATC 57.316 37.500 0.00 0.00 0.00 2.24
2555 2687 4.655963 TCAGCAGCCTCAAAAAGTATCTT 58.344 39.130 0.00 0.00 0.00 2.40
2571 2703 7.437713 AAGTATCTTCATGAGTCATGGGTTA 57.562 36.000 28.54 18.11 41.66 2.85
2575 2707 5.674525 TCTTCATGAGTCATGGGTTATGTC 58.325 41.667 28.54 0.00 41.66 3.06
2580 2712 5.948742 TGAGTCATGGGTTATGTCATGTA 57.051 39.130 0.00 0.00 40.94 2.29
2581 2713 6.306643 TGAGTCATGGGTTATGTCATGTAA 57.693 37.500 0.00 0.00 40.94 2.41
2588 2720 5.960113 TGGGTTATGTCATGTAATTGTTGC 58.040 37.500 0.00 0.00 0.00 4.17
2590 2722 5.804979 GGGTTATGTCATGTAATTGTTGCAC 59.195 40.000 0.00 0.00 0.00 4.57
2614 2748 7.010552 CACATTAATACTCGGAGTTCTTTCCAG 59.989 40.741 16.95 3.25 37.05 3.86
2619 2753 3.256136 ACTCGGAGTTCTTTCCAGTACAG 59.744 47.826 4.45 0.00 37.05 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.798907 ACATATCTTCTAAACTGCGTGTCG 59.201 41.667 0.00 0.00 0.00 4.35
1 2 6.648725 AACATATCTTCTAAACTGCGTGTC 57.351 37.500 0.00 0.00 0.00 3.67
2 3 7.435068 AAAACATATCTTCTAAACTGCGTGT 57.565 32.000 0.00 0.00 0.00 4.49
31 32 9.497030 GTGCTTTAATTTTTGGTTTTCGAAATT 57.503 25.926 12.12 2.97 36.18 1.82
32 33 8.669243 TGTGCTTTAATTTTTGGTTTTCGAAAT 58.331 25.926 12.12 0.00 0.00 2.17
33 34 8.029642 TGTGCTTTAATTTTTGGTTTTCGAAA 57.970 26.923 6.47 6.47 0.00 3.46
34 35 7.596749 TGTGCTTTAATTTTTGGTTTTCGAA 57.403 28.000 0.00 0.00 0.00 3.71
35 36 7.596749 TTGTGCTTTAATTTTTGGTTTTCGA 57.403 28.000 0.00 0.00 0.00 3.71
36 37 8.171840 TCTTTGTGCTTTAATTTTTGGTTTTCG 58.828 29.630 0.00 0.00 0.00 3.46
37 38 9.833182 TTCTTTGTGCTTTAATTTTTGGTTTTC 57.167 25.926 0.00 0.00 0.00 2.29
38 39 9.619316 GTTCTTTGTGCTTTAATTTTTGGTTTT 57.381 25.926 0.00 0.00 0.00 2.43
39 40 7.960195 CGTTCTTTGTGCTTTAATTTTTGGTTT 59.040 29.630 0.00 0.00 0.00 3.27
40 41 7.332182 TCGTTCTTTGTGCTTTAATTTTTGGTT 59.668 29.630 0.00 0.00 0.00 3.67
41 42 6.814146 TCGTTCTTTGTGCTTTAATTTTTGGT 59.186 30.769 0.00 0.00 0.00 3.67
42 43 7.227992 TCGTTCTTTGTGCTTTAATTTTTGG 57.772 32.000 0.00 0.00 0.00 3.28
43 44 8.165428 TGTTCGTTCTTTGTGCTTTAATTTTTG 58.835 29.630 0.00 0.00 0.00 2.44
44 45 8.245701 TGTTCGTTCTTTGTGCTTTAATTTTT 57.754 26.923 0.00 0.00 0.00 1.94
45 46 7.820044 TGTTCGTTCTTTGTGCTTTAATTTT 57.180 28.000 0.00 0.00 0.00 1.82
46 47 7.704472 TCATGTTCGTTCTTTGTGCTTTAATTT 59.296 29.630 0.00 0.00 0.00 1.82
47 48 7.199766 TCATGTTCGTTCTTTGTGCTTTAATT 58.800 30.769 0.00 0.00 0.00 1.40
48 49 6.734137 TCATGTTCGTTCTTTGTGCTTTAAT 58.266 32.000 0.00 0.00 0.00 1.40
49 50 6.125327 TCATGTTCGTTCTTTGTGCTTTAA 57.875 33.333 0.00 0.00 0.00 1.52
50 51 5.277779 CCTCATGTTCGTTCTTTGTGCTTTA 60.278 40.000 0.00 0.00 0.00 1.85
51 52 4.498009 CCTCATGTTCGTTCTTTGTGCTTT 60.498 41.667 0.00 0.00 0.00 3.51
52 53 3.003689 CCTCATGTTCGTTCTTTGTGCTT 59.996 43.478 0.00 0.00 0.00 3.91
53 54 2.549754 CCTCATGTTCGTTCTTTGTGCT 59.450 45.455 0.00 0.00 0.00 4.40
54 55 2.548057 TCCTCATGTTCGTTCTTTGTGC 59.452 45.455 0.00 0.00 0.00 4.57
55 56 4.811555 TTCCTCATGTTCGTTCTTTGTG 57.188 40.909 0.00 0.00 0.00 3.33
56 57 7.687941 AATATTCCTCATGTTCGTTCTTTGT 57.312 32.000 0.00 0.00 0.00 2.83
59 60 8.345565 GCATTAATATTCCTCATGTTCGTTCTT 58.654 33.333 0.00 0.00 0.00 2.52
60 61 7.498900 TGCATTAATATTCCTCATGTTCGTTCT 59.501 33.333 0.00 0.00 0.00 3.01
61 62 7.639039 TGCATTAATATTCCTCATGTTCGTTC 58.361 34.615 0.00 0.00 0.00 3.95
62 63 7.283127 ACTGCATTAATATTCCTCATGTTCGTT 59.717 33.333 0.00 0.00 0.00 3.85
63 64 6.767902 ACTGCATTAATATTCCTCATGTTCGT 59.232 34.615 0.00 0.00 0.00 3.85
64 65 7.073883 CACTGCATTAATATTCCTCATGTTCG 58.926 38.462 0.00 0.00 0.00 3.95
65 66 7.365741 CCACTGCATTAATATTCCTCATGTTC 58.634 38.462 0.00 0.00 0.00 3.18
66 67 6.239120 GCCACTGCATTAATATTCCTCATGTT 60.239 38.462 0.00 0.00 37.47 2.71
67 68 5.242393 GCCACTGCATTAATATTCCTCATGT 59.758 40.000 0.00 0.00 37.47 3.21
68 69 5.242171 TGCCACTGCATTAATATTCCTCATG 59.758 40.000 0.00 0.00 44.23 3.07
69 70 5.387788 TGCCACTGCATTAATATTCCTCAT 58.612 37.500 0.00 0.00 44.23 2.90
70 71 4.790937 TGCCACTGCATTAATATTCCTCA 58.209 39.130 0.00 0.00 44.23 3.86
84 85 0.738412 GGATGTTTGCATGCCACTGC 60.738 55.000 16.68 8.00 42.62 4.40
85 86 0.604073 TGGATGTTTGCATGCCACTG 59.396 50.000 16.68 0.00 41.92 3.66
86 87 1.479323 GATGGATGTTTGCATGCCACT 59.521 47.619 16.68 2.34 41.92 4.00
87 88 1.799917 CGATGGATGTTTGCATGCCAC 60.800 52.381 16.68 12.63 41.92 5.01
88 89 0.456628 CGATGGATGTTTGCATGCCA 59.543 50.000 16.68 6.39 41.92 4.92
89 90 0.457035 ACGATGGATGTTTGCATGCC 59.543 50.000 16.68 0.00 41.92 4.40
90 91 1.135315 ACACGATGGATGTTTGCATGC 60.135 47.619 11.82 11.82 42.76 4.06
91 92 2.162008 TCACACGATGGATGTTTGCATG 59.838 45.455 0.00 0.00 33.54 4.06
92 93 2.421073 CTCACACGATGGATGTTTGCAT 59.579 45.455 0.00 0.00 36.50 3.96
93 94 1.805943 CTCACACGATGGATGTTTGCA 59.194 47.619 0.00 0.00 0.00 4.08
94 95 2.076100 TCTCACACGATGGATGTTTGC 58.924 47.619 0.00 0.00 0.00 3.68
95 96 4.747540 TTTCTCACACGATGGATGTTTG 57.252 40.909 0.00 0.00 0.00 2.93
96 97 5.766150 TTTTTCTCACACGATGGATGTTT 57.234 34.783 0.00 0.00 0.00 2.83
182 183 4.350441 CCGCTAGCGCTCCTAGGC 62.350 72.222 31.35 11.06 43.15 3.93
183 184 3.675563 CCCGCTAGCGCTCCTAGG 61.676 72.222 31.35 21.16 43.15 3.02
184 185 4.350441 GCCCGCTAGCGCTCCTAG 62.350 72.222 31.35 16.14 45.26 3.02
214 215 2.603953 AGTTTTAAGGACGCGTCTAGC 58.396 47.619 35.50 21.02 43.95 3.42
215 216 4.738740 CCATAGTTTTAAGGACGCGTCTAG 59.261 45.833 35.50 12.72 0.00 2.43
216 217 4.158394 ACCATAGTTTTAAGGACGCGTCTA 59.842 41.667 35.50 20.35 0.00 2.59
217 218 3.056322 ACCATAGTTTTAAGGACGCGTCT 60.056 43.478 35.50 21.43 0.00 4.18
218 219 3.256558 ACCATAGTTTTAAGGACGCGTC 58.743 45.455 30.67 30.67 0.00 5.19
219 220 3.056322 AGACCATAGTTTTAAGGACGCGT 60.056 43.478 13.85 13.85 0.00 6.01
220 221 3.306166 CAGACCATAGTTTTAAGGACGCG 59.694 47.826 3.53 3.53 0.00 6.01
221 222 4.501071 TCAGACCATAGTTTTAAGGACGC 58.499 43.478 0.00 0.00 0.00 5.19
222 223 5.109903 CCTCAGACCATAGTTTTAAGGACG 58.890 45.833 0.00 0.00 0.00 4.79
223 224 5.429130 CCCTCAGACCATAGTTTTAAGGAC 58.571 45.833 0.00 0.00 0.00 3.85
224 225 4.080526 GCCCTCAGACCATAGTTTTAAGGA 60.081 45.833 0.00 0.00 0.00 3.36
225 226 4.200092 GCCCTCAGACCATAGTTTTAAGG 58.800 47.826 0.00 0.00 0.00 2.69
226 227 3.871594 CGCCCTCAGACCATAGTTTTAAG 59.128 47.826 0.00 0.00 0.00 1.85
227 228 3.370103 CCGCCCTCAGACCATAGTTTTAA 60.370 47.826 0.00 0.00 0.00 1.52
228 229 2.169769 CCGCCCTCAGACCATAGTTTTA 59.830 50.000 0.00 0.00 0.00 1.52
229 230 1.065418 CCGCCCTCAGACCATAGTTTT 60.065 52.381 0.00 0.00 0.00 2.43
230 231 0.541863 CCGCCCTCAGACCATAGTTT 59.458 55.000 0.00 0.00 0.00 2.66
231 232 0.325296 TCCGCCCTCAGACCATAGTT 60.325 55.000 0.00 0.00 0.00 2.24
232 233 1.043673 GTCCGCCCTCAGACCATAGT 61.044 60.000 0.00 0.00 0.00 2.12
233 234 1.043116 TGTCCGCCCTCAGACCATAG 61.043 60.000 0.00 0.00 31.76 2.23
234 235 1.001120 TGTCCGCCCTCAGACCATA 59.999 57.895 0.00 0.00 31.76 2.74
235 236 2.284625 TGTCCGCCCTCAGACCAT 60.285 61.111 0.00 0.00 31.76 3.55
236 237 3.311110 GTGTCCGCCCTCAGACCA 61.311 66.667 0.00 0.00 31.76 4.02
237 238 4.436998 CGTGTCCGCCCTCAGACC 62.437 72.222 0.00 0.00 31.76 3.85
238 239 3.371063 TCGTGTCCGCCCTCAGAC 61.371 66.667 0.00 0.00 0.00 3.51
239 240 3.371063 GTCGTGTCCGCCCTCAGA 61.371 66.667 0.00 0.00 0.00 3.27
240 241 4.436998 GGTCGTGTCCGCCCTCAG 62.437 72.222 0.00 0.00 0.00 3.35
242 243 4.436998 CTGGTCGTGTCCGCCCTC 62.437 72.222 0.00 0.00 32.09 4.30
246 247 3.858868 TTGAGCTGGTCGTGTCCGC 62.859 63.158 0.00 0.00 0.00 5.54
247 248 2.022129 GTTGAGCTGGTCGTGTCCG 61.022 63.158 0.00 0.00 0.00 4.79
248 249 2.022129 CGTTGAGCTGGTCGTGTCC 61.022 63.158 0.00 0.00 0.00 4.02
249 250 2.022129 CCGTTGAGCTGGTCGTGTC 61.022 63.158 0.00 0.00 0.00 3.67
250 251 2.029073 CCGTTGAGCTGGTCGTGT 59.971 61.111 0.00 0.00 0.00 4.49
251 252 2.029073 ACCGTTGAGCTGGTCGTG 59.971 61.111 0.00 0.00 31.16 4.35
252 253 2.029073 CACCGTTGAGCTGGTCGT 59.971 61.111 0.00 0.00 35.96 4.34
253 254 2.738521 CCACCGTTGAGCTGGTCG 60.739 66.667 0.00 0.00 35.96 4.79
254 255 1.668151 GTCCACCGTTGAGCTGGTC 60.668 63.158 0.00 0.00 35.96 4.02
255 256 0.830444 TAGTCCACCGTTGAGCTGGT 60.830 55.000 0.00 0.00 39.66 4.00
256 257 0.389948 GTAGTCCACCGTTGAGCTGG 60.390 60.000 0.00 0.00 0.00 4.85
257 258 0.603569 AGTAGTCCACCGTTGAGCTG 59.396 55.000 0.00 0.00 0.00 4.24
258 259 0.889306 GAGTAGTCCACCGTTGAGCT 59.111 55.000 0.00 0.00 0.00 4.09
259 260 0.601558 TGAGTAGTCCACCGTTGAGC 59.398 55.000 0.00 0.00 0.00 4.26
260 261 2.927014 GCTTGAGTAGTCCACCGTTGAG 60.927 54.545 0.00 0.00 0.00 3.02
261 262 1.000506 GCTTGAGTAGTCCACCGTTGA 59.999 52.381 0.00 0.00 0.00 3.18
262 263 1.429463 GCTTGAGTAGTCCACCGTTG 58.571 55.000 0.00 0.00 0.00 4.10
263 264 0.320697 GGCTTGAGTAGTCCACCGTT 59.679 55.000 0.00 0.00 0.00 4.44
264 265 0.542232 AGGCTTGAGTAGTCCACCGT 60.542 55.000 0.00 0.00 0.00 4.83
265 266 1.471119 TAGGCTTGAGTAGTCCACCG 58.529 55.000 0.00 0.00 0.00 4.94
266 267 2.365941 GGATAGGCTTGAGTAGTCCACC 59.634 54.545 0.00 0.00 0.00 4.61
267 268 3.068873 CAGGATAGGCTTGAGTAGTCCAC 59.931 52.174 0.00 0.00 0.00 4.02
268 269 3.052869 TCAGGATAGGCTTGAGTAGTCCA 60.053 47.826 0.00 0.00 0.00 4.02
269 270 3.567397 TCAGGATAGGCTTGAGTAGTCC 58.433 50.000 0.00 0.00 0.00 3.85
270 271 4.846779 CTCAGGATAGGCTTGAGTAGTC 57.153 50.000 5.88 0.00 43.58 2.59
276 277 1.402896 CGGGCTCAGGATAGGCTTGA 61.403 60.000 0.00 0.00 41.59 3.02
277 278 1.070445 CGGGCTCAGGATAGGCTTG 59.930 63.158 0.00 0.00 41.59 4.01
278 279 2.812619 GCGGGCTCAGGATAGGCTT 61.813 63.158 0.00 0.00 41.59 4.35
279 280 3.237741 GCGGGCTCAGGATAGGCT 61.238 66.667 0.00 0.00 41.59 4.58
280 281 4.321966 GGCGGGCTCAGGATAGGC 62.322 72.222 0.00 0.00 41.17 3.93
281 282 3.631046 GGGCGGGCTCAGGATAGG 61.631 72.222 0.26 0.00 0.00 2.57
282 283 2.388890 CTTGGGCGGGCTCAGGATAG 62.389 65.000 0.00 0.00 0.00 2.08
283 284 2.366301 TTGGGCGGGCTCAGGATA 60.366 61.111 0.26 0.00 0.00 2.59
284 285 3.801997 CTTGGGCGGGCTCAGGAT 61.802 66.667 0.00 0.00 0.00 3.24
286 287 4.785453 GACTTGGGCGGGCTCAGG 62.785 72.222 0.60 0.60 0.00 3.86
287 288 4.785453 GGACTTGGGCGGGCTCAG 62.785 72.222 0.26 0.21 0.00 3.35
291 292 4.660938 AAGTGGACTTGGGCGGGC 62.661 66.667 0.00 0.00 34.38 6.13
292 293 1.524008 GAAAAGTGGACTTGGGCGGG 61.524 60.000 0.00 0.00 36.12 6.13
293 294 1.524008 GGAAAAGTGGACTTGGGCGG 61.524 60.000 0.00 0.00 36.12 6.13
294 295 0.821711 TGGAAAAGTGGACTTGGGCG 60.822 55.000 0.00 0.00 36.12 6.13
295 296 1.632589 ATGGAAAAGTGGACTTGGGC 58.367 50.000 0.00 0.00 36.12 5.36
296 297 4.010349 GAGTATGGAAAAGTGGACTTGGG 58.990 47.826 0.00 0.00 36.12 4.12
297 298 4.010349 GGAGTATGGAAAAGTGGACTTGG 58.990 47.826 0.00 0.00 36.12 3.61
298 299 4.911390 AGGAGTATGGAAAAGTGGACTTG 58.089 43.478 0.00 0.00 36.12 3.16
299 300 5.316987 CAAGGAGTATGGAAAAGTGGACTT 58.683 41.667 0.00 0.00 37.91 3.01
300 301 4.807643 GCAAGGAGTATGGAAAAGTGGACT 60.808 45.833 0.00 0.00 0.00 3.85
301 302 3.440522 GCAAGGAGTATGGAAAAGTGGAC 59.559 47.826 0.00 0.00 0.00 4.02
302 303 3.561313 GGCAAGGAGTATGGAAAAGTGGA 60.561 47.826 0.00 0.00 0.00 4.02
303 304 2.755103 GGCAAGGAGTATGGAAAAGTGG 59.245 50.000 0.00 0.00 0.00 4.00
304 305 2.755103 GGGCAAGGAGTATGGAAAAGTG 59.245 50.000 0.00 0.00 0.00 3.16
305 306 2.291605 GGGGCAAGGAGTATGGAAAAGT 60.292 50.000 0.00 0.00 0.00 2.66
306 307 2.379005 GGGGCAAGGAGTATGGAAAAG 58.621 52.381 0.00 0.00 0.00 2.27
307 308 1.006639 GGGGGCAAGGAGTATGGAAAA 59.993 52.381 0.00 0.00 0.00 2.29
308 309 0.629058 GGGGGCAAGGAGTATGGAAA 59.371 55.000 0.00 0.00 0.00 3.13
309 310 1.632018 CGGGGGCAAGGAGTATGGAA 61.632 60.000 0.00 0.00 0.00 3.53
310 311 2.070039 CGGGGGCAAGGAGTATGGA 61.070 63.158 0.00 0.00 0.00 3.41
311 312 2.325393 GACGGGGGCAAGGAGTATGG 62.325 65.000 0.00 0.00 0.00 2.74
312 313 1.146263 GACGGGGGCAAGGAGTATG 59.854 63.158 0.00 0.00 0.00 2.39
313 314 1.003051 AGACGGGGGCAAGGAGTAT 59.997 57.895 0.00 0.00 0.00 2.12
314 315 1.684734 GAGACGGGGGCAAGGAGTA 60.685 63.158 0.00 0.00 0.00 2.59
315 316 3.003763 GAGACGGGGGCAAGGAGT 61.004 66.667 0.00 0.00 0.00 3.85
316 317 3.787001 GGAGACGGGGGCAAGGAG 61.787 72.222 0.00 0.00 0.00 3.69
317 318 4.332543 AGGAGACGGGGGCAAGGA 62.333 66.667 0.00 0.00 0.00 3.36
318 319 3.787001 GAGGAGACGGGGGCAAGG 61.787 72.222 0.00 0.00 0.00 3.61
319 320 3.787001 GGAGGAGACGGGGGCAAG 61.787 72.222 0.00 0.00 0.00 4.01
320 321 4.332543 AGGAGGAGACGGGGGCAA 62.333 66.667 0.00 0.00 0.00 4.52
321 322 4.779733 GAGGAGGAGACGGGGGCA 62.780 72.222 0.00 0.00 0.00 5.36
327 328 3.827898 GGTGCCGAGGAGGAGACG 61.828 72.222 0.00 0.00 45.00 4.18
328 329 3.462678 GGGTGCCGAGGAGGAGAC 61.463 72.222 0.00 0.00 45.00 3.36
329 330 3.965026 CTGGGTGCCGAGGAGGAGA 62.965 68.421 0.00 0.00 45.00 3.71
330 331 3.465403 CTGGGTGCCGAGGAGGAG 61.465 72.222 0.00 0.00 45.00 3.69
331 332 2.822643 AATCTGGGTGCCGAGGAGGA 62.823 60.000 0.50 0.00 45.00 3.71
332 333 2.317149 GAATCTGGGTGCCGAGGAGG 62.317 65.000 0.50 0.00 44.97 4.30
333 334 1.144936 GAATCTGGGTGCCGAGGAG 59.855 63.158 0.50 0.00 0.00 3.69
334 335 1.612146 TGAATCTGGGTGCCGAGGA 60.612 57.895 0.50 0.00 0.00 3.71
335 336 1.450312 GTGAATCTGGGTGCCGAGG 60.450 63.158 0.50 0.00 0.00 4.63
336 337 1.450312 GGTGAATCTGGGTGCCGAG 60.450 63.158 0.00 0.00 0.00 4.63
337 338 2.668632 GGTGAATCTGGGTGCCGA 59.331 61.111 0.00 0.00 0.00 5.54
338 339 2.819595 CGGTGAATCTGGGTGCCG 60.820 66.667 0.00 0.00 0.00 5.69
339 340 3.134127 GCGGTGAATCTGGGTGCC 61.134 66.667 0.00 0.00 0.00 5.01
340 341 2.359850 TGCGGTGAATCTGGGTGC 60.360 61.111 0.00 0.00 0.00 5.01
341 342 1.021390 GTCTGCGGTGAATCTGGGTG 61.021 60.000 0.00 0.00 0.00 4.61
384 385 2.665000 CCAGCGAGGCAAAGGAGA 59.335 61.111 0.00 0.00 0.00 3.71
385 386 2.437359 CCCAGCGAGGCAAAGGAG 60.437 66.667 0.00 0.00 35.39 3.69
386 387 3.249189 ACCCAGCGAGGCAAAGGA 61.249 61.111 0.00 0.00 35.39 3.36
387 388 3.058160 CACCCAGCGAGGCAAAGG 61.058 66.667 0.00 0.00 35.39 3.11
421 430 1.066303 GACCGAGCTCATGGTGTAGAG 59.934 57.143 16.98 0.00 38.99 2.43
464 493 2.488545 GGTACTGACAGTCTGACACGAT 59.511 50.000 12.39 0.00 0.00 3.73
466 495 1.399855 CGGTACTGACAGTCTGACACG 60.400 57.143 12.39 7.30 0.00 4.49
513 542 2.432628 GTGGAGACGGCTTCGGTG 60.433 66.667 0.00 0.00 38.38 4.94
514 543 3.692406 GGTGGAGACGGCTTCGGT 61.692 66.667 0.00 0.00 38.38 4.69
535 568 4.316823 AGGGTGGAGGCTGGTCGA 62.317 66.667 0.00 0.00 0.00 4.20
581 615 2.086869 GGACACATCCACATCAACCAG 58.913 52.381 0.00 0.00 45.47 4.00
595 629 2.343758 GAGAAGCTGCGGGACACA 59.656 61.111 0.00 0.00 0.00 3.72
653 687 2.223641 CCACCTCGAATTTCCATGCATG 60.224 50.000 20.19 20.19 0.00 4.06
657 691 2.710377 TGTCCACCTCGAATTTCCATG 58.290 47.619 0.00 0.00 0.00 3.66
667 701 2.465860 TACACCATTTGTCCACCTCG 57.534 50.000 0.00 0.00 39.91 4.63
676 735 1.405105 CAAGCGGGGATACACCATTTG 59.595 52.381 0.00 0.00 41.20 2.32
740 799 1.344942 GCGACGTCTGTGTGGATCAC 61.345 60.000 14.70 0.00 46.31 3.06
745 804 2.693250 TTCCTGCGACGTCTGTGTGG 62.693 60.000 14.70 8.55 0.00 4.17
746 805 0.874175 TTTCCTGCGACGTCTGTGTG 60.874 55.000 14.70 0.00 0.00 3.82
754 813 0.953471 TCACCCATTTTCCTGCGACG 60.953 55.000 0.00 0.00 0.00 5.12
757 816 0.457035 CCATCACCCATTTTCCTGCG 59.543 55.000 0.00 0.00 0.00 5.18
759 818 0.826062 GGCCATCACCCATTTTCCTG 59.174 55.000 0.00 0.00 0.00 3.86
814 885 7.792374 TGATCATTCTACTTCCTTGCATTAC 57.208 36.000 0.00 0.00 0.00 1.89
820 891 7.854557 TCACATTGATCATTCTACTTCCTTG 57.145 36.000 0.00 0.00 0.00 3.61
833 904 9.506018 TCTTTCTTCAGTATTTCACATTGATCA 57.494 29.630 0.00 0.00 0.00 2.92
838 909 7.391833 GTCCCTCTTTCTTCAGTATTTCACATT 59.608 37.037 0.00 0.00 0.00 2.71
879 950 2.002505 TATGTAGGGAGAGCAGGAGC 57.997 55.000 0.00 0.00 42.56 4.70
883 954 6.226787 CCTGTTAAATATGTAGGGAGAGCAG 58.773 44.000 0.00 0.00 0.00 4.24
895 966 8.635765 AGTGCCATATAACCCTGTTAAATATG 57.364 34.615 0.00 0.00 32.67 1.78
929 1008 5.478407 TGCACACGAGAGAATTGAAGAATA 58.522 37.500 0.00 0.00 0.00 1.75
949 1028 1.080995 GTTGGTTTTGCTGCGTTGCA 61.081 50.000 0.00 0.56 41.65 4.08
954 1033 1.480205 CAGAAGTTGGTTTTGCTGCG 58.520 50.000 0.00 0.00 0.00 5.18
959 1038 4.137543 ACTCTAGGCAGAAGTTGGTTTTG 58.862 43.478 0.00 0.00 0.00 2.44
964 1043 3.971245 AGAACTCTAGGCAGAAGTTGG 57.029 47.619 0.00 0.00 0.00 3.77
971 1050 7.399245 ACTAAGAAGTAAGAACTCTAGGCAG 57.601 40.000 0.00 0.00 33.75 4.85
1031 1118 3.748645 AGCTGGTCTCTTCTTCTCCTA 57.251 47.619 0.00 0.00 0.00 2.94
1114 1201 4.041075 TCAGCAGGTATGTCAAGGTTGTAA 59.959 41.667 0.00 0.00 0.00 2.41
1137 1224 7.187824 TCTACCAAGCAAATTCAGAGTAGAT 57.812 36.000 0.00 0.00 32.27 1.98
1262 1386 0.042581 TGGGATGGAGTAGAGCCACA 59.957 55.000 0.00 0.00 38.44 4.17
1267 1391 3.491619 CGTCATTGTGGGATGGAGTAGAG 60.492 52.174 0.00 0.00 0.00 2.43
1271 1395 1.275666 TCGTCATTGTGGGATGGAGT 58.724 50.000 0.00 0.00 0.00 3.85
1289 1413 3.604582 AGAGCAGCCTAAGTCAACAATC 58.395 45.455 0.00 0.00 0.00 2.67
1475 1602 3.623703 TCCCTTGTGATCCACATCAATG 58.376 45.455 0.27 0.00 44.16 2.82
1482 1609 1.077429 GCCCTCCCTTGTGATCCAC 60.077 63.158 0.00 0.00 34.56 4.02
1498 1625 2.999331 TGTAGAAAGCAGGTATTGGCC 58.001 47.619 0.00 0.00 0.00 5.36
1561 1688 2.632996 TGAAAGAGATGAACACTCCCGT 59.367 45.455 0.00 0.00 35.27 5.28
1563 1690 4.249661 GAGTGAAAGAGATGAACACTCCC 58.750 47.826 0.00 0.00 46.34 4.30
1601 1728 0.100146 CTAGTACCCGAGAACGCCAC 59.900 60.000 0.00 0.00 38.29 5.01
1607 1734 1.547372 GTTGGTGCTAGTACCCGAGAA 59.453 52.381 25.17 11.38 40.09 2.87
1628 1755 5.808042 ATTATGCAAGTAAGCTGTGTCTG 57.192 39.130 0.00 0.00 34.99 3.51
1630 1757 8.964420 TTAAAATTATGCAAGTAAGCTGTGTC 57.036 30.769 0.00 0.00 34.99 3.67
1650 1777 9.796120 GACCGATGTGGATGATTAAAATTAAAA 57.204 29.630 0.00 0.00 42.00 1.52
1655 1782 8.924511 AATAGACCGATGTGGATGATTAAAAT 57.075 30.769 0.00 0.00 42.00 1.82
1686 1815 7.713750 AGCTCCATGAATTCATCAATTTACAG 58.286 34.615 18.16 4.04 42.54 2.74
1689 1818 9.412460 ACTTAGCTCCATGAATTCATCAATTTA 57.588 29.630 18.16 6.25 42.54 1.40
1692 1822 8.435187 TCTACTTAGCTCCATGAATTCATCAAT 58.565 33.333 18.16 5.81 42.54 2.57
1696 1826 7.129457 TGTCTACTTAGCTCCATGAATTCAT 57.871 36.000 15.36 15.36 36.96 2.57
1703 1833 3.643320 TGGGATGTCTACTTAGCTCCATG 59.357 47.826 0.00 0.00 0.00 3.66
1705 1835 3.398318 TGGGATGTCTACTTAGCTCCA 57.602 47.619 0.00 0.00 0.00 3.86
1721 1851 9.703892 CTAATGTAAATTGACATTGTTTTGGGA 57.296 29.630 25.63 7.22 46.88 4.37
1741 1873 9.774742 GCGTTTATTTTTCAGAGATTCTAATGT 57.225 29.630 0.00 0.00 0.00 2.71
1742 1874 9.994432 AGCGTTTATTTTTCAGAGATTCTAATG 57.006 29.630 0.00 0.00 0.00 1.90
1745 1877 9.647797 TGTAGCGTTTATTTTTCAGAGATTCTA 57.352 29.630 0.00 0.00 0.00 2.10
1751 1883 9.988350 ATAACATGTAGCGTTTATTTTTCAGAG 57.012 29.630 0.00 0.00 0.00 3.35
1760 1892 6.984474 AGCTGTGTATAACATGTAGCGTTTAT 59.016 34.615 0.00 0.00 38.39 1.40
1761 1893 6.334989 AGCTGTGTATAACATGTAGCGTTTA 58.665 36.000 0.00 0.00 38.39 2.01
1789 1921 5.997746 TCTTTTATTGCCCTCTAATCCATCG 59.002 40.000 0.00 0.00 0.00 3.84
1807 1939 9.618890 CTTCCTTCATTCAGATATGGTCTTTTA 57.381 33.333 0.00 0.00 34.00 1.52
1821 1953 3.076079 TGCTGATGCTTCCTTCATTCA 57.924 42.857 0.00 0.00 40.48 2.57
1822 1954 4.360563 CAATGCTGATGCTTCCTTCATTC 58.639 43.478 0.00 0.00 40.48 2.67
1833 1965 0.809385 AGTCACTGCAATGCTGATGC 59.191 50.000 18.78 7.58 44.08 3.91
1838 1970 0.035056 GGGGTAGTCACTGCAATGCT 60.035 55.000 6.82 0.00 0.00 3.79
1845 1977 1.064825 AAAGGGTGGGGTAGTCACTG 58.935 55.000 0.00 0.00 35.61 3.66
1848 1980 0.768622 CACAAAGGGTGGGGTAGTCA 59.231 55.000 0.00 0.00 44.04 3.41
1863 1995 4.037446 GCTCTTGGTACATTTTCACCACAA 59.963 41.667 0.00 0.00 44.42 3.33
1924 2056 5.070446 TCCATCGGCAACTAGTTCTTCATAT 59.930 40.000 4.77 0.00 0.00 1.78
1925 2057 4.404394 TCCATCGGCAACTAGTTCTTCATA 59.596 41.667 4.77 0.00 0.00 2.15
1943 2075 5.649782 AATGTGAGAACCATTTGTCCATC 57.350 39.130 0.00 0.00 0.00 3.51
2017 2149 5.051816 TGTACAGAAAGTGAAAGTAACCCG 58.948 41.667 0.00 0.00 0.00 5.28
2053 2185 9.830186 AAGTATGATATATCCTTGTGTACCTCT 57.170 33.333 10.25 0.00 0.00 3.69
2094 2226 8.973378 TGTGCTTTAATCAAAATTTAGTTTCCG 58.027 29.630 0.00 0.00 0.00 4.30
2109 2241 6.000891 TGTTGTGATCAGTGTGCTTTAATC 57.999 37.500 0.00 0.00 0.00 1.75
2115 2247 1.544093 CCCTGTTGTGATCAGTGTGCT 60.544 52.381 0.00 0.00 0.00 4.40
2119 2251 0.037303 AGCCCCTGTTGTGATCAGTG 59.963 55.000 0.00 0.00 0.00 3.66
2129 2261 1.415672 TTTCTCCACGAGCCCCTGTT 61.416 55.000 0.00 0.00 0.00 3.16
2136 2268 2.096019 CAGCTTTTCTTTCTCCACGAGC 60.096 50.000 0.00 0.00 0.00 5.03
2176 2308 3.183130 CCATTGATGGCCCGTACAA 57.817 52.632 0.00 1.61 41.75 2.41
2181 2313 0.956633 CTTCATCCATTGATGGCCCG 59.043 55.000 0.00 0.00 46.92 6.13
2190 2322 4.019174 CCACTGCCTTAACTTCATCCATT 58.981 43.478 0.00 0.00 0.00 3.16
2214 2346 3.182590 AAACTGCTGGCTCCGCTCA 62.183 57.895 0.00 0.00 0.00 4.26
2217 2349 0.744414 TATCAAACTGCTGGCTCCGC 60.744 55.000 0.00 0.00 0.00 5.54
2219 2351 4.455606 ACTAATATCAAACTGCTGGCTCC 58.544 43.478 0.00 0.00 0.00 4.70
2235 2367 7.541091 GTCTCGAACAGTTTGATGTGACTAATA 59.459 37.037 3.51 0.00 32.52 0.98
2236 2368 6.366332 GTCTCGAACAGTTTGATGTGACTAAT 59.634 38.462 3.51 0.00 32.52 1.73
2238 2370 5.009710 AGTCTCGAACAGTTTGATGTGACTA 59.990 40.000 16.95 0.00 33.44 2.59
2240 2372 4.051922 AGTCTCGAACAGTTTGATGTGAC 58.948 43.478 3.51 8.18 32.52 3.67
2262 2394 4.543689 AGTCGTCATAAGGATCCCAGTTA 58.456 43.478 8.55 0.78 0.00 2.24
2265 2397 2.030717 CGAGTCGTCATAAGGATCCCAG 60.031 54.545 8.55 0.00 0.00 4.45
2310 2442 4.353737 CGATGTTTATGCCACTTTGGATG 58.646 43.478 0.00 0.00 40.96 3.51
2311 2443 3.181487 GCGATGTTTATGCCACTTTGGAT 60.181 43.478 0.00 0.00 40.96 3.41
2343 2475 1.606531 GGGCTCCATCACTGCTCTT 59.393 57.895 0.00 0.00 0.00 2.85
2382 2514 3.648528 CTCATCGAGCACGGATTCA 57.351 52.632 3.11 0.00 40.21 2.57
2409 2541 3.919804 ACGCGACGTTATAAGCAAACTTA 59.080 39.130 15.93 0.00 38.76 2.24
2430 2562 5.236695 GGTCTTCTCTTTGTCAAGGTGTAAC 59.763 44.000 0.00 0.00 0.00 2.50
2433 2565 3.199946 TGGTCTTCTCTTTGTCAAGGTGT 59.800 43.478 0.00 0.00 0.00 4.16
2441 2573 5.364157 ACAGAGTACTTGGTCTTCTCTTTGT 59.636 40.000 0.00 0.00 33.92 2.83
2445 2577 4.730966 TGACAGAGTACTTGGTCTTCTCT 58.269 43.478 21.32 0.71 36.15 3.10
2487 2619 4.141846 ACACATCGTCTATGCCTCATCTTT 60.142 41.667 0.00 0.00 39.39 2.52
2507 2639 6.826893 AACACATAAATTGCAAGAACACAC 57.173 33.333 4.94 0.00 0.00 3.82
2512 2644 8.087136 TGCTGATAAACACATAAATTGCAAGAA 58.913 29.630 4.94 0.00 0.00 2.52
2528 2660 5.126396 ACTTTTTGAGGCTGCTGATAAAC 57.874 39.130 0.00 0.00 0.00 2.01
2538 2670 6.479884 ACTCATGAAGATACTTTTTGAGGCT 58.520 36.000 18.93 0.00 34.78 4.58
2544 2676 7.177878 ACCCATGACTCATGAAGATACTTTTT 58.822 34.615 19.04 0.00 43.81 1.94
2549 2681 7.220030 ACATAACCCATGACTCATGAAGATAC 58.780 38.462 19.04 0.00 43.81 2.24
2553 2685 5.430886 TGACATAACCCATGACTCATGAAG 58.569 41.667 19.04 12.49 43.81 3.02
2555 2687 5.104402 ACATGACATAACCCATGACTCATGA 60.104 40.000 19.04 0.00 43.90 3.07
2588 2720 6.816640 TGGAAAGAACTCCGAGTATTAATGTG 59.183 38.462 0.26 0.00 38.44 3.21
2590 2722 7.042335 ACTGGAAAGAACTCCGAGTATTAATG 58.958 38.462 0.26 0.00 38.44 1.90
2600 2732 2.028930 AGCTGTACTGGAAAGAACTCCG 60.029 50.000 1.65 0.00 38.44 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.