Multiple sequence alignment - TraesCS7D01G037600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G037600 chr7D 100.000 3203 0 0 1 3203 18949396 18946194 0.000000e+00 5915.0
1 TraesCS7D01G037600 chr7D 86.124 1917 211 34 867 2752 18929874 18927982 0.000000e+00 2015.0
2 TraesCS7D01G037600 chr4A 84.462 2156 273 39 631 2752 713835237 713833110 0.000000e+00 2069.0
3 TraesCS7D01G037600 chr4A 95.514 535 22 2 1428 1961 713847540 713847007 0.000000e+00 854.0
4 TraesCS7D01G037600 chr4A 91.214 387 19 8 1958 2334 713838849 713838468 2.200000e-141 512.0
5 TraesCS7D01G037600 chr4A 82.051 195 35 0 3009 3203 714103538 714103344 1.980000e-37 167.0
6 TraesCS7D01G037600 chr4A 79.861 144 14 11 2800 2928 713833112 713832969 1.220000e-14 91.6
7 TraesCS7D01G037600 chr7A 96.910 1165 36 0 2039 3203 19443354 19442190 0.000000e+00 1953.0
8 TraesCS7D01G037600 chr7A 84.615 1859 195 40 863 2671 19422099 19420282 0.000000e+00 1764.0
9 TraesCS7D01G037600 chr7A 92.789 943 55 9 1113 2052 19505477 19504545 0.000000e+00 1352.0
10 TraesCS7D01G037600 chr7A 94.782 824 38 2 1232 2051 19447641 19446819 0.000000e+00 1279.0
11 TraesCS7D01G037600 chr7A 85.417 864 107 11 1460 2313 19387425 19386571 0.000000e+00 880.0
12 TraesCS7D01G037600 chr7A 81.315 578 67 22 2256 2828 19373976 19373435 6.350000e-117 431.0
13 TraesCS7D01G037600 chr7A 89.299 271 23 6 844 1110 19506093 19505825 5.120000e-88 335.0
14 TraesCS7D01G037600 chr7A 90.566 159 11 3 2057 2212 19491482 19491325 1.160000e-49 207.0
15 TraesCS7D01G037600 chr7A 90.780 141 12 1 641 780 19506240 19506100 1.520000e-43 187.0
16 TraesCS7D01G037600 chr1A 80.166 1442 234 35 893 2303 516165067 516163647 0.000000e+00 1031.0
17 TraesCS7D01G037600 chr1D 83.667 900 139 5 1317 2209 419071051 419070153 0.000000e+00 841.0
18 TraesCS7D01G037600 chrUn 77.622 286 53 4 1835 2109 91385539 91385254 2.560000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G037600 chr7D 18946194 18949396 3202 True 5915.000000 5915 100.000 1 3203 1 chr7D.!!$R2 3202
1 TraesCS7D01G037600 chr7D 18927982 18929874 1892 True 2015.000000 2015 86.124 867 2752 1 chr7D.!!$R1 1885
2 TraesCS7D01G037600 chr4A 713832969 713838849 5880 True 890.866667 2069 85.179 631 2928 3 chr4A.!!$R3 2297
3 TraesCS7D01G037600 chr4A 713847007 713847540 533 True 854.000000 854 95.514 1428 1961 1 chr4A.!!$R1 533
4 TraesCS7D01G037600 chr7A 19420282 19422099 1817 True 1764.000000 1764 84.615 863 2671 1 chr7A.!!$R3 1808
5 TraesCS7D01G037600 chr7A 19442190 19447641 5451 True 1616.000000 1953 95.846 1232 3203 2 chr7A.!!$R5 1971
6 TraesCS7D01G037600 chr7A 19386571 19387425 854 True 880.000000 880 85.417 1460 2313 1 chr7A.!!$R2 853
7 TraesCS7D01G037600 chr7A 19504545 19506240 1695 True 624.666667 1352 90.956 641 2052 3 chr7A.!!$R6 1411
8 TraesCS7D01G037600 chr7A 19373435 19373976 541 True 431.000000 431 81.315 2256 2828 1 chr7A.!!$R1 572
9 TraesCS7D01G037600 chr1A 516163647 516165067 1420 True 1031.000000 1031 80.166 893 2303 1 chr1A.!!$R1 1410
10 TraesCS7D01G037600 chr1D 419070153 419071051 898 True 841.000000 841 83.667 1317 2209 1 chr1D.!!$R1 892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.036294 GGCCGATAGATAACCCCTGC 60.036 60.0 0.00 0.00 39.76 4.85 F
809 3793 0.106769 TGCAAGAACTTCAGGGTGCA 60.107 50.0 0.00 0.00 39.53 4.57 F
832 3816 0.318441 TAGCAAGACAAGAGCGCACT 59.682 50.0 11.47 5.59 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1110 4134 0.815734 AATGAAGCAGCACATCTGGC 59.184 50.000 0.00 0.0 43.06 4.85 R
1763 5143 1.601914 CCATCATCCGTACGCGAATCA 60.602 52.381 15.93 0.0 41.33 2.57 R
2389 9267 2.297033 ACTGCCATGAATTGTGAACCAC 59.703 45.455 0.00 0.0 34.56 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.592426 GCCGGCCGATAGATAACC 57.408 61.111 30.73 0.00 39.76 2.85
18 19 1.079336 GCCGGCCGATAGATAACCC 60.079 63.158 30.73 0.00 39.76 4.11
19 20 1.595357 CCGGCCGATAGATAACCCC 59.405 63.158 30.73 0.00 39.76 4.95
20 21 0.903454 CCGGCCGATAGATAACCCCT 60.903 60.000 30.73 0.00 39.76 4.79
21 22 0.246635 CGGCCGATAGATAACCCCTG 59.753 60.000 24.07 0.00 39.76 4.45
22 23 0.036294 GGCCGATAGATAACCCCTGC 60.036 60.000 0.00 0.00 39.76 4.85
23 24 0.977395 GCCGATAGATAACCCCTGCT 59.023 55.000 0.00 0.00 39.76 4.24
24 25 1.348036 GCCGATAGATAACCCCTGCTT 59.652 52.381 0.00 0.00 39.76 3.91
25 26 2.613223 GCCGATAGATAACCCCTGCTTC 60.613 54.545 0.00 0.00 39.76 3.86
26 27 2.352814 CCGATAGATAACCCCTGCTTCG 60.353 54.545 0.00 0.00 39.76 3.79
27 28 2.689646 GATAGATAACCCCTGCTTCGC 58.310 52.381 0.00 0.00 0.00 4.70
28 29 1.789523 TAGATAACCCCTGCTTCGCT 58.210 50.000 0.00 0.00 0.00 4.93
30 31 0.533085 GATAACCCCTGCTTCGCTCC 60.533 60.000 0.00 0.00 0.00 4.70
33 34 4.168291 CCCCTGCTTCGCTCCCTC 62.168 72.222 0.00 0.00 0.00 4.30
34 35 4.521062 CCCTGCTTCGCTCCCTCG 62.521 72.222 0.00 0.00 0.00 4.63
36 37 4.140599 CTGCTTCGCTCCCTCGCT 62.141 66.667 0.00 0.00 0.00 4.93
37 38 4.135153 TGCTTCGCTCCCTCGCTC 62.135 66.667 0.00 0.00 0.00 5.03
40 41 2.829003 TTCGCTCCCTCGCTCGAT 60.829 61.111 0.00 0.00 0.00 3.59
41 42 2.725275 CTTCGCTCCCTCGCTCGATC 62.725 65.000 0.00 0.00 0.00 3.69
42 43 4.335584 CGCTCCCTCGCTCGATCC 62.336 72.222 0.00 0.00 0.00 3.36
43 44 3.219928 GCTCCCTCGCTCGATCCA 61.220 66.667 0.00 0.00 0.00 3.41
45 46 3.187699 CTCCCTCGCTCGATCCACG 62.188 68.421 0.00 0.00 44.09 4.94
46 47 4.271816 CCCTCGCTCGATCCACGG 62.272 72.222 0.00 0.00 42.82 4.94
47 48 4.933064 CCTCGCTCGATCCACGGC 62.933 72.222 0.00 0.00 42.82 5.68
68 69 4.400961 GTCTCCGGCTGGCTTGCT 62.401 66.667 6.73 0.00 34.14 3.91
70 71 4.711949 CTCCGGCTGGCTTGCTGT 62.712 66.667 6.73 0.00 37.61 4.40
148 149 4.256180 GATTGGAGGCGGCGGGAT 62.256 66.667 9.78 0.00 0.00 3.85
149 150 3.774599 GATTGGAGGCGGCGGGATT 62.775 63.158 9.78 0.00 0.00 3.01
150 151 4.794648 TTGGAGGCGGCGGGATTG 62.795 66.667 9.78 0.00 0.00 2.67
162 163 4.506255 GGATTGGGGGCCGGACTG 62.506 72.222 7.57 0.00 0.00 3.51
187 188 2.910994 CCGGCGGACCTACCCTAG 60.911 72.222 24.41 0.00 34.64 3.02
196 197 3.912907 CTACCCTAGGCGCCGGTG 61.913 72.222 28.54 19.13 0.00 4.94
215 216 4.907034 CGGTGCGTCGGAGATCGG 62.907 72.222 0.00 0.00 40.67 4.18
217 218 4.570663 GTGCGTCGGAGATCGGGG 62.571 72.222 0.00 0.00 40.67 5.73
225 226 4.247380 GAGATCGGGGGCCAGCAG 62.247 72.222 4.39 0.00 0.00 4.24
239 240 2.358003 GCAGCAGCTCAGGTTCGT 60.358 61.111 0.00 0.00 37.91 3.85
241 242 1.739562 CAGCAGCTCAGGTTCGTCC 60.740 63.158 0.00 0.00 0.00 4.79
243 244 1.446966 GCAGCTCAGGTTCGTCCTC 60.447 63.158 0.00 0.00 46.24 3.71
244 245 1.216710 CAGCTCAGGTTCGTCCTCC 59.783 63.158 0.00 0.00 46.24 4.30
245 246 1.985116 AGCTCAGGTTCGTCCTCCC 60.985 63.158 0.00 0.00 46.24 4.30
246 247 1.985116 GCTCAGGTTCGTCCTCCCT 60.985 63.158 0.00 0.00 46.24 4.20
247 248 1.950973 GCTCAGGTTCGTCCTCCCTC 61.951 65.000 0.00 0.00 46.24 4.30
248 249 1.305046 TCAGGTTCGTCCTCCCTCC 60.305 63.158 0.00 0.00 46.24 4.30
250 251 1.000612 AGGTTCGTCCTCCCTCCTC 59.999 63.158 0.00 0.00 44.42 3.71
252 253 1.324005 GGTTCGTCCTCCCTCCTCAG 61.324 65.000 0.00 0.00 0.00 3.35
256 257 0.825840 CGTCCTCCCTCCTCAGGATC 60.826 65.000 0.00 0.00 43.65 3.36
258 259 0.560193 TCCTCCCTCCTCAGGATCTG 59.440 60.000 0.00 0.00 43.65 2.90
259 260 1.120795 CCTCCCTCCTCAGGATCTGC 61.121 65.000 0.00 0.00 43.65 4.26
260 261 1.074926 TCCCTCCTCAGGATCTGCC 60.075 63.158 0.00 0.00 43.65 4.85
261 262 2.506061 CCCTCCTCAGGATCTGCCG 61.506 68.421 0.00 0.00 43.65 5.69
262 263 2.420890 CTCCTCAGGATCTGCCGC 59.579 66.667 0.00 0.00 43.43 6.53
263 264 2.042537 TCCTCAGGATCTGCCGCT 60.043 61.111 0.00 0.00 43.43 5.52
265 266 1.109920 TCCTCAGGATCTGCCGCTAC 61.110 60.000 0.00 0.00 43.43 3.58
266 267 1.395045 CCTCAGGATCTGCCGCTACA 61.395 60.000 0.00 0.00 43.43 2.74
267 268 0.249238 CTCAGGATCTGCCGCTACAC 60.249 60.000 0.00 0.00 43.43 2.90
269 270 1.032794 CAGGATCTGCCGCTACACTA 58.967 55.000 0.00 0.00 43.43 2.74
274 275 3.067742 GGATCTGCCGCTACACTAGTTTA 59.932 47.826 0.00 0.00 0.00 2.01
275 276 3.498927 TCTGCCGCTACACTAGTTTAC 57.501 47.619 0.00 0.00 0.00 2.01
276 277 2.165030 TCTGCCGCTACACTAGTTTACC 59.835 50.000 0.00 0.00 0.00 2.85
277 278 1.894466 TGCCGCTACACTAGTTTACCA 59.106 47.619 0.00 0.00 0.00 3.25
278 279 2.094390 TGCCGCTACACTAGTTTACCAG 60.094 50.000 0.00 0.00 0.00 4.00
279 280 2.537401 CCGCTACACTAGTTTACCAGC 58.463 52.381 0.00 0.00 0.00 4.85
280 281 2.094390 CCGCTACACTAGTTTACCAGCA 60.094 50.000 0.00 0.00 0.00 4.41
281 282 3.430374 CCGCTACACTAGTTTACCAGCAT 60.430 47.826 0.00 0.00 0.00 3.79
282 283 4.181578 CGCTACACTAGTTTACCAGCATT 58.818 43.478 0.00 0.00 0.00 3.56
283 284 4.630069 CGCTACACTAGTTTACCAGCATTT 59.370 41.667 0.00 0.00 0.00 2.32
284 285 5.445939 CGCTACACTAGTTTACCAGCATTTG 60.446 44.000 0.00 0.00 0.00 2.32
286 287 6.072673 GCTACACTAGTTTACCAGCATTTGTT 60.073 38.462 0.00 0.00 0.00 2.83
288 289 6.735130 ACACTAGTTTACCAGCATTTGTTTC 58.265 36.000 0.00 0.00 0.00 2.78
289 290 6.149633 CACTAGTTTACCAGCATTTGTTTCC 58.850 40.000 0.00 0.00 0.00 3.13
290 291 6.016276 CACTAGTTTACCAGCATTTGTTTCCT 60.016 38.462 0.00 0.00 0.00 3.36
293 294 5.128663 AGTTTACCAGCATTTGTTTCCTTGT 59.871 36.000 0.00 0.00 0.00 3.16
294 295 3.457610 ACCAGCATTTGTTTCCTTGTG 57.542 42.857 0.00 0.00 0.00 3.33
296 297 2.137523 CAGCATTTGTTTCCTTGTGGC 58.862 47.619 0.00 0.00 0.00 5.01
297 298 2.041701 AGCATTTGTTTCCTTGTGGCT 58.958 42.857 0.00 0.00 0.00 4.75
298 299 2.036346 AGCATTTGTTTCCTTGTGGCTC 59.964 45.455 0.00 0.00 0.00 4.70
300 301 1.757682 TTTGTTTCCTTGTGGCTCGT 58.242 45.000 0.00 0.00 0.00 4.18
301 302 1.757682 TTGTTTCCTTGTGGCTCGTT 58.242 45.000 0.00 0.00 0.00 3.85
302 303 1.305201 TGTTTCCTTGTGGCTCGTTC 58.695 50.000 0.00 0.00 0.00 3.95
303 304 1.305201 GTTTCCTTGTGGCTCGTTCA 58.695 50.000 0.00 0.00 0.00 3.18
304 305 1.264288 GTTTCCTTGTGGCTCGTTCAG 59.736 52.381 0.00 0.00 0.00 3.02
305 306 0.250295 TTCCTTGTGGCTCGTTCAGG 60.250 55.000 0.00 0.00 0.00 3.86
306 307 1.118965 TCCTTGTGGCTCGTTCAGGA 61.119 55.000 0.00 0.00 0.00 3.86
308 309 1.363744 CTTGTGGCTCGTTCAGGATC 58.636 55.000 0.00 0.00 0.00 3.36
309 310 0.976641 TTGTGGCTCGTTCAGGATCT 59.023 50.000 0.00 0.00 0.00 2.75
313 314 1.086634 GGCTCGTTCAGGATCTGCAC 61.087 60.000 0.00 0.00 0.00 4.57
314 315 0.108424 GCTCGTTCAGGATCTGCACT 60.108 55.000 0.00 0.00 0.00 4.40
315 316 1.135139 GCTCGTTCAGGATCTGCACTA 59.865 52.381 0.00 0.00 0.00 2.74
317 318 3.004839 GCTCGTTCAGGATCTGCACTATA 59.995 47.826 0.00 0.00 0.00 1.31
319 320 4.207955 TCGTTCAGGATCTGCACTATACT 58.792 43.478 0.00 0.00 0.00 2.12
320 321 5.374071 TCGTTCAGGATCTGCACTATACTA 58.626 41.667 0.00 0.00 0.00 1.82
321 322 5.238868 TCGTTCAGGATCTGCACTATACTAC 59.761 44.000 0.00 0.00 0.00 2.73
322 323 5.239744 CGTTCAGGATCTGCACTATACTACT 59.760 44.000 0.00 0.00 0.00 2.57
323 324 6.442952 GTTCAGGATCTGCACTATACTACTG 58.557 44.000 0.00 0.00 0.00 2.74
324 325 4.520874 TCAGGATCTGCACTATACTACTGC 59.479 45.833 0.00 0.00 0.00 4.40
325 326 4.522405 CAGGATCTGCACTATACTACTGCT 59.478 45.833 0.00 0.00 0.00 4.24
326 327 5.707764 CAGGATCTGCACTATACTACTGCTA 59.292 44.000 0.00 0.00 0.00 3.49
327 328 5.708230 AGGATCTGCACTATACTACTGCTAC 59.292 44.000 0.00 0.00 0.00 3.58
328 329 5.106078 GGATCTGCACTATACTACTGCTACC 60.106 48.000 0.00 0.00 0.00 3.18
331 332 4.788679 TGCACTATACTACTGCTACCTGA 58.211 43.478 0.00 0.00 0.00 3.86
332 333 5.386060 TGCACTATACTACTGCTACCTGAT 58.614 41.667 0.00 0.00 0.00 2.90
334 335 7.002276 TGCACTATACTACTGCTACCTGATAA 58.998 38.462 0.00 0.00 0.00 1.75
335 336 7.175119 TGCACTATACTACTGCTACCTGATAAG 59.825 40.741 0.00 0.00 0.00 1.73
336 337 7.175293 GCACTATACTACTGCTACCTGATAAGT 59.825 40.741 0.00 0.00 0.00 2.24
337 338 8.508062 CACTATACTACTGCTACCTGATAAGTG 58.492 40.741 0.00 0.00 0.00 3.16
338 339 8.438373 ACTATACTACTGCTACCTGATAAGTGA 58.562 37.037 0.00 0.00 0.00 3.41
343 344 8.438373 ACTACTGCTACCTGATAAGTGATACTA 58.562 37.037 0.00 0.00 0.00 1.82
344 345 7.513371 ACTGCTACCTGATAAGTGATACTAC 57.487 40.000 0.00 0.00 0.00 2.73
345 346 6.490721 ACTGCTACCTGATAAGTGATACTACC 59.509 42.308 0.00 0.00 0.00 3.18
346 347 6.611785 TGCTACCTGATAAGTGATACTACCT 58.388 40.000 0.00 0.00 0.00 3.08
348 349 6.128227 GCTACCTGATAAGTGATACTACCTCG 60.128 46.154 0.00 0.00 0.00 4.63
350 351 6.835174 ACCTGATAAGTGATACTACCTCGTA 58.165 40.000 0.00 0.00 0.00 3.43
352 353 6.128227 CCTGATAAGTGATACTACCTCGTAGC 60.128 46.154 0.00 0.00 39.51 3.58
353 354 5.704515 TGATAAGTGATACTACCTCGTAGCC 59.295 44.000 0.00 0.00 39.51 3.93
355 356 4.970860 AGTGATACTACCTCGTAGCCTA 57.029 45.455 0.00 0.00 39.51 3.93
356 357 5.301835 AGTGATACTACCTCGTAGCCTAA 57.698 43.478 0.00 0.00 39.51 2.69
357 358 5.878627 AGTGATACTACCTCGTAGCCTAAT 58.121 41.667 0.00 0.00 39.51 1.73
358 359 6.305411 AGTGATACTACCTCGTAGCCTAATT 58.695 40.000 0.00 0.00 39.51 1.40
359 360 7.456725 AGTGATACTACCTCGTAGCCTAATTA 58.543 38.462 0.00 0.00 39.51 1.40
360 361 8.108364 AGTGATACTACCTCGTAGCCTAATTAT 58.892 37.037 0.00 0.00 39.51 1.28
361 362 8.182881 GTGATACTACCTCGTAGCCTAATTATG 58.817 40.741 0.00 0.00 39.51 1.90
362 363 5.388408 ACTACCTCGTAGCCTAATTATGC 57.612 43.478 4.70 4.70 39.51 3.14
364 365 4.522722 ACCTCGTAGCCTAATTATGCTC 57.477 45.455 17.21 9.40 39.00 4.26
365 366 3.258622 ACCTCGTAGCCTAATTATGCTCC 59.741 47.826 17.21 6.86 39.00 4.70
366 367 3.258372 CCTCGTAGCCTAATTATGCTCCA 59.742 47.826 17.21 0.36 39.00 3.86
367 368 4.489810 CTCGTAGCCTAATTATGCTCCAG 58.510 47.826 17.21 10.74 39.00 3.86
368 369 2.996621 CGTAGCCTAATTATGCTCCAGC 59.003 50.000 17.21 7.27 39.00 4.85
369 370 2.575805 AGCCTAATTATGCTCCAGCC 57.424 50.000 9.22 0.00 41.18 4.85
371 372 2.039613 AGCCTAATTATGCTCCAGCCTC 59.960 50.000 9.22 0.00 41.18 4.70
372 373 2.877708 GCCTAATTATGCTCCAGCCTCC 60.878 54.545 5.57 0.00 41.18 4.30
373 374 2.373169 CCTAATTATGCTCCAGCCTCCA 59.627 50.000 0.00 0.00 41.18 3.86
374 375 3.009916 CCTAATTATGCTCCAGCCTCCAT 59.990 47.826 0.00 0.00 41.18 3.41
375 376 2.875094 ATTATGCTCCAGCCTCCATC 57.125 50.000 0.00 0.00 41.18 3.51
376 377 0.394192 TTATGCTCCAGCCTCCATCG 59.606 55.000 0.00 0.00 41.18 3.84
384 385 3.161450 GCCTCCATCGGCCTACCA 61.161 66.667 0.00 0.00 44.41 3.25
385 386 3.142393 CCTCCATCGGCCTACCAG 58.858 66.667 0.00 0.00 34.57 4.00
386 387 1.762460 CCTCCATCGGCCTACCAGT 60.762 63.158 0.00 0.00 34.57 4.00
387 388 0.469331 CCTCCATCGGCCTACCAGTA 60.469 60.000 0.00 0.00 34.57 2.74
389 390 1.971357 CTCCATCGGCCTACCAGTAAT 59.029 52.381 0.00 0.00 34.57 1.89
390 391 3.162666 CTCCATCGGCCTACCAGTAATA 58.837 50.000 0.00 0.00 34.57 0.98
391 392 3.769844 CTCCATCGGCCTACCAGTAATAT 59.230 47.826 0.00 0.00 34.57 1.28
392 393 4.164981 TCCATCGGCCTACCAGTAATATT 58.835 43.478 0.00 0.00 34.57 1.28
393 394 4.020573 TCCATCGGCCTACCAGTAATATTG 60.021 45.833 0.00 0.00 34.57 1.90
396 397 4.482030 TCGGCCTACCAGTAATATTGGTA 58.518 43.478 13.04 13.04 46.80 3.25
412 413 3.671008 TGGTAACACTAACGCATCACT 57.329 42.857 0.00 0.00 46.17 3.41
413 414 3.581755 TGGTAACACTAACGCATCACTC 58.418 45.455 0.00 0.00 46.17 3.51
414 415 3.006003 TGGTAACACTAACGCATCACTCA 59.994 43.478 0.00 0.00 46.17 3.41
415 416 3.991773 GGTAACACTAACGCATCACTCAA 59.008 43.478 0.00 0.00 0.00 3.02
416 417 4.449743 GGTAACACTAACGCATCACTCAAA 59.550 41.667 0.00 0.00 0.00 2.69
417 418 5.049954 GGTAACACTAACGCATCACTCAAAA 60.050 40.000 0.00 0.00 0.00 2.44
418 419 4.732285 ACACTAACGCATCACTCAAAAG 57.268 40.909 0.00 0.00 0.00 2.27
419 420 3.058914 ACACTAACGCATCACTCAAAAGC 60.059 43.478 0.00 0.00 0.00 3.51
421 422 4.388773 CACTAACGCATCACTCAAAAGCTA 59.611 41.667 0.00 0.00 0.00 3.32
424 425 2.289694 ACGCATCACTCAAAAGCTACCT 60.290 45.455 0.00 0.00 0.00 3.08
425 426 2.349886 CGCATCACTCAAAAGCTACCTC 59.650 50.000 0.00 0.00 0.00 3.85
427 428 4.006319 GCATCACTCAAAAGCTACCTCTT 58.994 43.478 0.00 0.00 0.00 2.85
428 429 4.457257 GCATCACTCAAAAGCTACCTCTTT 59.543 41.667 0.00 0.00 37.86 2.52
429 430 5.048434 GCATCACTCAAAAGCTACCTCTTTT 60.048 40.000 0.00 0.00 44.47 2.27
430 431 6.515696 GCATCACTCAAAAGCTACCTCTTTTT 60.516 38.462 0.00 0.00 42.48 1.94
431 432 7.308589 GCATCACTCAAAAGCTACCTCTTTTTA 60.309 37.037 0.00 0.00 42.48 1.52
432 433 7.492352 TCACTCAAAAGCTACCTCTTTTTAC 57.508 36.000 0.00 0.00 42.48 2.01
433 434 6.485648 TCACTCAAAAGCTACCTCTTTTTACC 59.514 38.462 0.00 0.00 42.48 2.85
434 435 5.768662 ACTCAAAAGCTACCTCTTTTTACCC 59.231 40.000 0.00 0.00 42.48 3.69
435 436 5.697067 TCAAAAGCTACCTCTTTTTACCCA 58.303 37.500 0.00 0.00 42.48 4.51
436 437 5.533528 TCAAAAGCTACCTCTTTTTACCCAC 59.466 40.000 0.00 0.00 42.48 4.61
437 438 4.995624 AAGCTACCTCTTTTTACCCACT 57.004 40.909 0.00 0.00 0.00 4.00
438 439 6.443995 AAAGCTACCTCTTTTTACCCACTA 57.556 37.500 0.00 0.00 32.78 2.74
440 441 5.092259 AGCTACCTCTTTTTACCCACTAGT 58.908 41.667 0.00 0.00 0.00 2.57
441 442 5.046520 AGCTACCTCTTTTTACCCACTAGTG 60.047 44.000 16.34 16.34 0.00 2.74
442 443 5.279859 GCTACCTCTTTTTACCCACTAGTGT 60.280 44.000 21.18 6.67 0.00 3.55
443 444 4.969484 ACCTCTTTTTACCCACTAGTGTG 58.031 43.478 21.18 13.01 43.45 3.82
446 447 5.221661 CCTCTTTTTACCCACTAGTGTGAGT 60.222 44.000 21.18 16.62 46.55 3.41
447 448 5.607477 TCTTTTTACCCACTAGTGTGAGTG 58.393 41.667 21.18 5.67 46.55 3.51
448 449 5.129815 TCTTTTTACCCACTAGTGTGAGTGT 59.870 40.000 21.18 11.94 46.55 3.55
449 450 4.330944 TTTACCCACTAGTGTGAGTGTG 57.669 45.455 21.18 4.24 46.55 3.82
451 452 1.687123 ACCCACTAGTGTGAGTGTGAC 59.313 52.381 21.18 0.00 46.55 3.67
453 454 2.102420 CCCACTAGTGTGAGTGTGACAA 59.898 50.000 21.18 0.00 46.55 3.18
454 455 3.244215 CCCACTAGTGTGAGTGTGACAAT 60.244 47.826 21.18 0.00 46.55 2.71
455 456 3.742882 CCACTAGTGTGAGTGTGACAATG 59.257 47.826 21.18 0.00 46.55 2.82
456 457 4.501400 CCACTAGTGTGAGTGTGACAATGA 60.501 45.833 21.18 0.00 46.55 2.57
457 458 4.445718 CACTAGTGTGAGTGTGACAATGAC 59.554 45.833 15.06 0.00 46.55 3.06
458 459 3.827008 AGTGTGAGTGTGACAATGACT 57.173 42.857 4.11 0.00 0.00 3.41
459 460 3.722147 AGTGTGAGTGTGACAATGACTC 58.278 45.455 4.11 0.37 37.27 3.36
460 461 3.386078 AGTGTGAGTGTGACAATGACTCT 59.614 43.478 4.11 2.85 37.58 3.24
461 462 3.492383 GTGTGAGTGTGACAATGACTCTG 59.508 47.826 4.11 0.00 37.58 3.35
462 463 3.384467 TGTGAGTGTGACAATGACTCTGA 59.616 43.478 4.11 0.00 37.58 3.27
463 464 3.738282 GTGAGTGTGACAATGACTCTGAC 59.262 47.826 0.00 0.00 37.58 3.51
466 467 2.478134 GTGTGACAATGACTCTGACAGC 59.522 50.000 0.00 0.00 0.00 4.40
467 468 1.723542 GTGACAATGACTCTGACAGCG 59.276 52.381 0.00 0.00 0.00 5.18
468 469 1.337167 TGACAATGACTCTGACAGCGG 60.337 52.381 0.00 0.00 0.00 5.52
469 470 0.681733 ACAATGACTCTGACAGCGGT 59.318 50.000 0.00 0.00 0.00 5.68
470 471 1.893137 ACAATGACTCTGACAGCGGTA 59.107 47.619 0.00 0.00 0.00 4.02
471 472 2.299013 ACAATGACTCTGACAGCGGTAA 59.701 45.455 0.00 0.00 0.00 2.85
472 473 3.244078 ACAATGACTCTGACAGCGGTAAA 60.244 43.478 0.00 0.00 0.00 2.01
473 474 3.678056 ATGACTCTGACAGCGGTAAAA 57.322 42.857 0.00 0.00 0.00 1.52
474 475 3.678056 TGACTCTGACAGCGGTAAAAT 57.322 42.857 0.00 0.00 0.00 1.82
475 476 4.794278 TGACTCTGACAGCGGTAAAATA 57.206 40.909 0.00 0.00 0.00 1.40
476 477 5.339008 TGACTCTGACAGCGGTAAAATAT 57.661 39.130 0.00 0.00 0.00 1.28
477 478 5.730550 TGACTCTGACAGCGGTAAAATATT 58.269 37.500 0.00 0.00 0.00 1.28
478 479 6.170506 TGACTCTGACAGCGGTAAAATATTT 58.829 36.000 0.00 0.00 0.00 1.40
479 480 6.312918 TGACTCTGACAGCGGTAAAATATTTC 59.687 38.462 0.10 0.00 0.00 2.17
480 481 6.407202 ACTCTGACAGCGGTAAAATATTTCT 58.593 36.000 0.10 0.00 0.00 2.52
481 482 6.879458 ACTCTGACAGCGGTAAAATATTTCTT 59.121 34.615 0.10 0.00 0.00 2.52
482 483 7.390718 ACTCTGACAGCGGTAAAATATTTCTTT 59.609 33.333 0.10 0.00 0.00 2.52
483 484 8.106247 TCTGACAGCGGTAAAATATTTCTTTT 57.894 30.769 0.10 0.00 33.17 2.27
484 485 8.234546 TCTGACAGCGGTAAAATATTTCTTTTC 58.765 33.333 0.10 0.00 31.15 2.29
485 486 8.106247 TGACAGCGGTAAAATATTTCTTTTCT 57.894 30.769 0.10 0.00 31.15 2.52
487 488 6.806739 ACAGCGGTAAAATATTTCTTTTCTGC 59.193 34.615 0.10 7.27 33.06 4.26
488 489 7.029563 CAGCGGTAAAATATTTCTTTTCTGCT 58.970 34.615 0.10 9.12 37.80 4.24
490 491 8.088365 AGCGGTAAAATATTTCTTTTCTGCTTT 58.912 29.630 0.10 0.00 36.07 3.51
491 492 8.373256 GCGGTAAAATATTTCTTTTCTGCTTTC 58.627 33.333 0.10 0.00 31.78 2.62
492 493 9.405587 CGGTAAAATATTTCTTTTCTGCTTTCA 57.594 29.630 0.10 0.00 31.15 2.69
500 501 8.776376 ATTTCTTTTCTGCTTTCAGTTTTGAA 57.224 26.923 0.00 0.00 41.44 2.69
501 502 7.581011 TTCTTTTCTGCTTTCAGTTTTGAAC 57.419 32.000 0.00 0.00 42.79 3.18
502 503 6.686630 TCTTTTCTGCTTTCAGTTTTGAACA 58.313 32.000 0.00 0.00 42.79 3.18
503 504 6.586082 TCTTTTCTGCTTTCAGTTTTGAACAC 59.414 34.615 0.00 0.00 42.79 3.32
505 506 4.016444 TCTGCTTTCAGTTTTGAACACCT 58.984 39.130 0.00 0.00 42.79 4.00
506 507 4.107622 CTGCTTTCAGTTTTGAACACCTG 58.892 43.478 0.00 0.00 42.79 4.00
507 508 2.860136 GCTTTCAGTTTTGAACACCTGC 59.140 45.455 0.00 0.00 42.79 4.85
508 509 3.675775 GCTTTCAGTTTTGAACACCTGCA 60.676 43.478 0.00 0.00 42.79 4.41
509 510 4.493547 CTTTCAGTTTTGAACACCTGCAA 58.506 39.130 0.00 0.00 42.79 4.08
511 512 3.088532 TCAGTTTTGAACACCTGCAAGT 58.911 40.909 0.00 0.00 0.00 3.16
512 513 3.509575 TCAGTTTTGAACACCTGCAAGTT 59.490 39.130 0.00 0.00 0.00 2.66
514 515 5.184096 TCAGTTTTGAACACCTGCAAGTTAA 59.816 36.000 0.00 0.00 0.00 2.01
516 517 5.867174 AGTTTTGAACACCTGCAAGTTAAAC 59.133 36.000 12.32 12.32 31.33 2.01
517 518 5.652994 TTTGAACACCTGCAAGTTAAACT 57.347 34.783 0.00 0.00 0.00 2.66
518 519 5.652994 TTGAACACCTGCAAGTTAAACTT 57.347 34.783 0.00 0.00 39.39 2.66
520 521 6.761099 TGAACACCTGCAAGTTAAACTTTA 57.239 33.333 0.00 0.00 36.03 1.85
521 522 7.341445 TGAACACCTGCAAGTTAAACTTTAT 57.659 32.000 0.00 0.00 36.03 1.40
523 524 9.073475 TGAACACCTGCAAGTTAAACTTTATAT 57.927 29.630 0.00 0.00 36.03 0.86
524 525 9.341899 GAACACCTGCAAGTTAAACTTTATATG 57.658 33.333 0.00 0.00 36.03 1.78
526 527 9.509956 ACACCTGCAAGTTAAACTTTATATGTA 57.490 29.630 0.00 0.00 36.03 2.29
540 541 9.784531 AACTTTATATGTAAGAGGTCATGGATG 57.215 33.333 6.46 0.00 0.00 3.51
544 545 9.948964 TTATATGTAAGAGGTCATGGATGAATG 57.051 33.333 0.00 0.00 38.75 2.67
545 546 5.698741 TGTAAGAGGTCATGGATGAATGT 57.301 39.130 0.00 0.00 38.75 2.71
546 547 6.806668 TGTAAGAGGTCATGGATGAATGTA 57.193 37.500 0.00 0.00 38.75 2.29
547 548 6.820335 TGTAAGAGGTCATGGATGAATGTAG 58.180 40.000 0.00 0.00 38.75 2.74
548 549 5.965033 AAGAGGTCATGGATGAATGTAGT 57.035 39.130 0.00 0.00 38.75 2.73
549 550 7.563556 TGTAAGAGGTCATGGATGAATGTAGTA 59.436 37.037 0.00 0.00 38.75 1.82
550 551 7.623999 AAGAGGTCATGGATGAATGTAGTAT 57.376 36.000 0.00 0.00 38.75 2.12
551 552 7.002250 AGAGGTCATGGATGAATGTAGTATG 57.998 40.000 0.00 0.00 38.75 2.39
552 553 5.555017 AGGTCATGGATGAATGTAGTATGC 58.445 41.667 0.00 0.00 38.75 3.14
553 554 5.309020 AGGTCATGGATGAATGTAGTATGCT 59.691 40.000 0.00 0.00 38.75 3.79
554 555 5.410746 GGTCATGGATGAATGTAGTATGCTG 59.589 44.000 0.00 0.00 38.75 4.41
555 556 4.999311 TCATGGATGAATGTAGTATGCTGC 59.001 41.667 0.00 0.00 33.08 5.25
556 557 4.694760 TGGATGAATGTAGTATGCTGCT 57.305 40.909 0.00 0.00 0.00 4.24
558 559 4.141642 TGGATGAATGTAGTATGCTGCTGT 60.142 41.667 0.00 0.00 0.00 4.40
560 561 6.169094 GGATGAATGTAGTATGCTGCTGTAT 58.831 40.000 0.00 0.00 0.00 2.29
561 562 6.652481 GGATGAATGTAGTATGCTGCTGTATT 59.348 38.462 0.00 0.00 0.00 1.89
562 563 7.819415 GGATGAATGTAGTATGCTGCTGTATTA 59.181 37.037 0.00 0.00 0.00 0.98
563 564 7.946655 TGAATGTAGTATGCTGCTGTATTAC 57.053 36.000 0.00 6.33 0.00 1.89
564 565 6.640907 TGAATGTAGTATGCTGCTGTATTACG 59.359 38.462 0.00 0.00 0.00 3.18
565 566 5.509716 TGTAGTATGCTGCTGTATTACGT 57.490 39.130 0.00 0.00 0.00 3.57
566 567 5.516996 TGTAGTATGCTGCTGTATTACGTC 58.483 41.667 0.00 0.00 0.00 4.34
568 569 1.852942 ATGCTGCTGTATTACGTCGG 58.147 50.000 0.00 0.00 0.00 4.79
570 571 1.744522 TGCTGCTGTATTACGTCGGTA 59.255 47.619 0.00 0.00 0.00 4.02
571 572 2.359848 TGCTGCTGTATTACGTCGGTAT 59.640 45.455 0.00 0.00 0.00 2.73
572 573 3.181484 TGCTGCTGTATTACGTCGGTATT 60.181 43.478 0.00 0.00 0.00 1.89
574 575 4.977963 GCTGCTGTATTACGTCGGTATTAA 59.022 41.667 0.00 0.00 0.00 1.40
575 576 5.632347 GCTGCTGTATTACGTCGGTATTAAT 59.368 40.000 0.00 0.00 0.00 1.40
576 577 6.803320 GCTGCTGTATTACGTCGGTATTAATA 59.197 38.462 0.00 0.00 0.00 0.98
578 579 6.803320 TGCTGTATTACGTCGGTATTAATAGC 59.197 38.462 13.56 13.56 33.33 2.97
579 580 6.803320 GCTGTATTACGTCGGTATTAATAGCA 59.197 38.462 21.24 8.53 33.17 3.49
580 581 7.008086 GCTGTATTACGTCGGTATTAATAGCAG 59.992 40.741 21.24 14.69 33.17 4.24
582 583 8.998377 TGTATTACGTCGGTATTAATAGCAGTA 58.002 33.333 21.24 17.68 0.00 2.74
583 584 9.825972 GTATTACGTCGGTATTAATAGCAGTAA 57.174 33.333 23.81 23.81 33.64 2.24
585 586 9.748708 ATTACGTCGGTATTAATAGCAGTAAAA 57.251 29.630 24.57 15.19 33.27 1.52
586 587 7.455331 ACGTCGGTATTAATAGCAGTAAAAC 57.545 36.000 21.24 9.87 0.00 2.43
587 588 7.035004 ACGTCGGTATTAATAGCAGTAAAACA 58.965 34.615 21.24 0.00 0.00 2.83
588 589 7.707893 ACGTCGGTATTAATAGCAGTAAAACAT 59.292 33.333 21.24 0.00 0.00 2.71
602 603 6.697019 GCAGTAAAACATTTTCTTTCTGCTCA 59.303 34.615 18.30 0.00 37.52 4.26
603 604 7.383300 GCAGTAAAACATTTTCTTTCTGCTCAT 59.617 33.333 18.30 0.00 37.52 2.90
604 605 9.252962 CAGTAAAACATTTTCTTTCTGCTCATT 57.747 29.630 0.00 0.00 0.00 2.57
605 606 9.468532 AGTAAAACATTTTCTTTCTGCTCATTC 57.531 29.630 0.00 0.00 0.00 2.67
606 607 9.248291 GTAAAACATTTTCTTTCTGCTCATTCA 57.752 29.630 0.00 0.00 0.00 2.57
608 609 6.645790 ACATTTTCTTTCTGCTCATTCAGT 57.354 33.333 0.00 0.00 35.63 3.41
609 610 7.047460 ACATTTTCTTTCTGCTCATTCAGTT 57.953 32.000 0.00 0.00 35.63 3.16
613 614 6.698008 TTCTTTCTGCTCATTCAGTTTTGA 57.302 33.333 0.00 0.00 35.63 2.69
614 615 6.698008 TCTTTCTGCTCATTCAGTTTTGAA 57.302 33.333 0.00 0.00 46.67 2.69
617 618 5.173774 TCTGCTCATTCAGTTTTGAACAC 57.826 39.130 0.00 0.00 45.54 3.32
618 619 4.036734 TCTGCTCATTCAGTTTTGAACACC 59.963 41.667 0.00 0.00 45.54 4.16
619 620 3.243035 TGCTCATTCAGTTTTGAACACCG 60.243 43.478 0.00 0.00 45.54 4.94
621 622 3.283751 TCATTCAGTTTTGAACACCGGT 58.716 40.909 0.00 0.00 45.54 5.28
622 623 4.452825 TCATTCAGTTTTGAACACCGGTA 58.547 39.130 6.87 0.00 45.54 4.02
623 624 4.882427 TCATTCAGTTTTGAACACCGGTAA 59.118 37.500 6.87 0.00 45.54 2.85
625 626 5.838531 TTCAGTTTTGAACACCGGTAATT 57.161 34.783 6.87 4.52 38.37 1.40
626 627 5.838531 TCAGTTTTGAACACCGGTAATTT 57.161 34.783 6.87 0.00 0.00 1.82
627 628 5.583495 TCAGTTTTGAACACCGGTAATTTG 58.417 37.500 6.87 0.00 0.00 2.32
628 629 4.742659 CAGTTTTGAACACCGGTAATTTGG 59.257 41.667 6.87 0.00 0.00 3.28
629 630 4.052608 GTTTTGAACACCGGTAATTTGGG 58.947 43.478 6.87 0.00 0.00 4.12
630 631 2.953284 TGAACACCGGTAATTTGGGA 57.047 45.000 6.87 0.00 0.00 4.37
631 632 2.506444 TGAACACCGGTAATTTGGGAC 58.494 47.619 6.87 0.00 0.00 4.46
632 633 1.465777 GAACACCGGTAATTTGGGACG 59.534 52.381 6.87 0.00 0.00 4.79
633 634 0.956902 ACACCGGTAATTTGGGACGC 60.957 55.000 6.87 0.00 0.00 5.19
637 3620 1.373590 CGGTAATTTGGGACGCAGGG 61.374 60.000 0.00 0.00 0.00 4.45
656 3639 3.643792 AGGGAGTATGTAAGAGGTCATGC 59.356 47.826 0.00 0.00 0.00 4.06
658 3641 4.372656 GGAGTATGTAAGAGGTCATGCAC 58.627 47.826 0.00 0.00 0.00 4.57
712 3695 2.056094 GTGCAGGTCACAAATTGCTC 57.944 50.000 0.00 0.00 44.98 4.26
717 3700 3.854784 GCAGGTCACAAATTGCTCTGTTC 60.855 47.826 0.00 0.00 33.88 3.18
758 3742 6.599244 AGGATTACACATTGAACCATACACTG 59.401 38.462 0.00 0.00 0.00 3.66
780 3764 9.282247 CACTGCACAGATGATCTTTTAATTAAC 57.718 33.333 4.31 0.00 0.00 2.01
781 3765 9.236006 ACTGCACAGATGATCTTTTAATTAACT 57.764 29.630 4.31 0.00 0.00 2.24
809 3793 0.106769 TGCAAGAACTTCAGGGTGCA 60.107 50.000 0.00 0.00 39.53 4.57
813 3797 3.087031 CAAGAACTTCAGGGTGCATCAT 58.913 45.455 0.00 0.00 0.00 2.45
815 3799 4.148128 AGAACTTCAGGGTGCATCATAG 57.852 45.455 0.00 0.00 0.00 2.23
828 3812 2.033065 GCATCATAGCAAGACAAGAGCG 60.033 50.000 0.00 0.00 0.00 5.03
832 3816 0.318441 TAGCAAGACAAGAGCGCACT 59.682 50.000 11.47 5.59 0.00 4.40
845 3829 1.004560 CGCACTCTCTTCAGGCCAA 60.005 57.895 5.01 0.00 0.00 4.52
854 3838 3.160269 CTCTTCAGGCCAAAAATCCACT 58.840 45.455 5.01 0.00 0.00 4.00
862 3846 2.298729 GCCAAAAATCCACTGTGCCTTA 59.701 45.455 1.29 0.00 0.00 2.69
865 3849 5.550290 CCAAAAATCCACTGTGCCTTAATT 58.450 37.500 1.29 0.00 0.00 1.40
870 3854 6.670695 AATCCACTGTGCCTTAATTTTTCT 57.329 33.333 1.29 0.00 0.00 2.52
871 3855 5.452078 TCCACTGTGCCTTAATTTTTCTG 57.548 39.130 1.29 0.00 0.00 3.02
872 3856 4.892934 TCCACTGTGCCTTAATTTTTCTGT 59.107 37.500 1.29 0.00 0.00 3.41
873 3857 6.065374 TCCACTGTGCCTTAATTTTTCTGTA 58.935 36.000 1.29 0.00 0.00 2.74
874 3858 6.719370 TCCACTGTGCCTTAATTTTTCTGTAT 59.281 34.615 1.29 0.00 0.00 2.29
875 3859 6.808212 CCACTGTGCCTTAATTTTTCTGTATG 59.192 38.462 1.29 0.00 0.00 2.39
878 3862 9.073475 ACTGTGCCTTAATTTTTCTGTATGTTA 57.927 29.630 0.00 0.00 0.00 2.41
924 3915 0.550914 AAACCAGCACCTCAGGAACA 59.449 50.000 0.00 0.00 0.00 3.18
946 3943 6.101332 ACAATATGTGCATTGTCATGTTTCC 58.899 36.000 0.00 0.00 43.96 3.13
960 3957 5.705441 GTCATGTTTCCTAGTCACCATTCAA 59.295 40.000 0.00 0.00 0.00 2.69
985 3989 5.893824 TCTATCTCATGTTCTTAGCACCTCA 59.106 40.000 0.00 0.00 0.00 3.86
986 3990 4.890158 TCTCATGTTCTTAGCACCTCAA 57.110 40.909 0.00 0.00 0.00 3.02
1090 4114 2.757314 TGTGTCTCTGCCATGTCTAGAG 59.243 50.000 10.31 10.31 39.38 2.43
1098 4122 2.103771 TGCCATGTCTAGAGATCAAGGC 59.896 50.000 18.01 18.01 39.95 4.35
1110 4134 2.207501 ATCAAGGCTGGGCAGACCTG 62.208 60.000 0.00 0.00 37.06 4.00
1165 4534 0.543174 AAGCTCCTTCACCGACCTCT 60.543 55.000 0.00 0.00 0.00 3.69
1178 4547 0.320771 GACCTCTTTGCCTTCGCTCA 60.321 55.000 0.00 0.00 35.36 4.26
1186 4555 2.345244 CCTTCGCTCACACCTGCT 59.655 61.111 0.00 0.00 0.00 4.24
1199 4568 4.099170 CTGCTGCTCTTGGCGTGC 62.099 66.667 0.00 0.00 45.43 5.34
1271 4641 3.194719 GCTCCTGCAACCTGATGC 58.805 61.111 0.00 0.00 46.58 3.91
1273 4646 1.302285 CTCCTGCAACCTGATGCCT 59.698 57.895 0.00 0.00 45.83 4.75
1353 4729 3.649986 GCCAGCAAACACTCGCGT 61.650 61.111 5.77 0.00 0.00 6.01
1365 4741 0.750850 ACTCGCGTATTGGCTACCAT 59.249 50.000 5.77 0.00 31.53 3.55
1467 4847 1.072015 GGCCATCTCATCTTCTCCAGG 59.928 57.143 0.00 0.00 0.00 4.45
1594 4974 1.909302 CTGTAGAGTCACCCAACCCAT 59.091 52.381 0.00 0.00 0.00 4.00
1604 4984 2.624838 CACCCAACCCATATCTCATTGC 59.375 50.000 0.00 0.00 0.00 3.56
2389 9267 5.452078 TTTGTACTCAATTTCTTGCCTGG 57.548 39.130 0.00 0.00 33.32 4.45
2560 9450 7.499292 TGATTTTGAATGTTGATTTCAGGTGT 58.501 30.769 0.00 0.00 34.76 4.16
2571 9461 3.500448 TTTCAGGTGTCATGCAAGGTA 57.500 42.857 0.00 0.00 0.00 3.08
2609 9499 1.196808 TCATGCGCTTTCCTTTCGAAC 59.803 47.619 9.73 0.00 0.00 3.95
2643 9559 6.035327 CCTGATTTCTTCAAATTTCGCCAATC 59.965 38.462 0.00 0.00 31.94 2.67
2681 9597 8.101309 TCTCCAAAGAGTCCCATTTGATAATA 57.899 34.615 5.21 0.00 41.26 0.98
2712 9628 6.222038 TCTTACTGTAGGTCCTAAGCATTG 57.778 41.667 0.00 0.00 0.00 2.82
2784 9701 9.630098 CATTACACAGTTGCATAGAATCTTTTT 57.370 29.630 0.00 0.00 0.00 1.94
3024 9952 0.188342 ATGGAGAGAGGGAGAGGAGC 59.812 60.000 0.00 0.00 0.00 4.70
3050 9978 3.373439 GGAGATCAATCACTGTGCTTCAC 59.627 47.826 2.12 0.00 34.56 3.18
3072 10000 2.741985 TGCTGTCATTGCCGTCCG 60.742 61.111 0.00 0.00 0.00 4.79
3129 10057 0.458543 ACCACATCGCTCATCGTCAC 60.459 55.000 0.00 0.00 39.67 3.67
3148 10076 0.451383 CTCTCTGCTCAGGTGAGTCG 59.549 60.000 8.74 0.93 43.85 4.18
3151 10079 1.445754 CTGCTCAGGTGAGTCGCTG 60.446 63.158 8.74 0.61 43.85 5.18
3155 10083 2.433838 CAGGTGAGTCGCTGCAGG 60.434 66.667 17.12 5.82 0.00 4.85
3173 10101 2.035632 AGGAGAGCAAACCTATCTCGG 58.964 52.381 0.00 0.00 40.32 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.246635 CAGGGGTTATCTATCGGCCG 59.753 60.000 22.12 22.12 0.00 6.13
4 5 0.977395 AGCAGGGGTTATCTATCGGC 59.023 55.000 0.00 0.00 0.00 5.54
5 6 2.352814 CGAAGCAGGGGTTATCTATCGG 60.353 54.545 0.00 0.00 0.00 4.18
6 7 2.947852 CGAAGCAGGGGTTATCTATCG 58.052 52.381 0.00 0.00 0.00 2.92
22 23 2.725275 GATCGAGCGAGGGAGCGAAG 62.725 65.000 0.00 0.00 43.00 3.79
23 24 2.829003 ATCGAGCGAGGGAGCGAA 60.829 61.111 0.00 0.00 43.00 4.70
24 25 3.280634 GATCGAGCGAGGGAGCGA 61.281 66.667 0.00 0.00 43.00 4.93
25 26 4.335584 GGATCGAGCGAGGGAGCG 62.336 72.222 0.00 0.00 43.00 5.03
26 27 3.219928 TGGATCGAGCGAGGGAGC 61.220 66.667 0.00 0.00 37.41 4.70
27 28 2.725008 GTGGATCGAGCGAGGGAG 59.275 66.667 0.00 0.00 0.00 4.30
28 29 3.209812 CGTGGATCGAGCGAGGGA 61.210 66.667 0.00 0.00 42.86 4.20
30 31 4.933064 GCCGTGGATCGAGCGAGG 62.933 72.222 0.00 0.00 42.86 4.63
51 52 4.400961 AGCAAGCCAGCCGGAGAC 62.401 66.667 5.05 0.00 34.23 3.36
53 54 4.711949 ACAGCAAGCCAGCCGGAG 62.712 66.667 5.05 0.00 34.23 4.63
117 118 4.845580 AATCGCCCGCAGCTGAGG 62.846 66.667 27.97 27.97 40.39 3.86
118 119 3.570638 CAATCGCCCGCAGCTGAG 61.571 66.667 20.43 15.45 40.39 3.35
131 132 3.774599 AATCCCGCCGCCTCCAATC 62.775 63.158 0.00 0.00 0.00 2.67
132 133 3.809013 AATCCCGCCGCCTCCAAT 61.809 61.111 0.00 0.00 0.00 3.16
133 134 4.794648 CAATCCCGCCGCCTCCAA 62.795 66.667 0.00 0.00 0.00 3.53
171 172 2.910994 CCTAGGGTAGGTCCGCCG 60.911 72.222 0.00 0.00 41.18 6.46
198 199 4.907034 CCGATCTCCGACGCACCG 62.907 72.222 0.00 0.00 41.76 4.94
199 200 4.570663 CCCGATCTCCGACGCACC 62.571 72.222 0.00 0.00 41.76 5.01
208 209 4.247380 CTGCTGGCCCCCGATCTC 62.247 72.222 0.00 0.00 0.00 2.75
233 234 1.305046 TGAGGAGGGAGGACGAACC 60.305 63.158 0.00 0.00 39.35 3.62
234 235 1.324005 CCTGAGGAGGGAGGACGAAC 61.324 65.000 0.00 0.00 35.40 3.95
235 236 1.000486 CCTGAGGAGGGAGGACGAA 60.000 63.158 0.00 0.00 35.40 3.85
238 239 0.560688 AGATCCTGAGGAGGGAGGAC 59.439 60.000 7.50 0.00 41.27 3.85
239 240 0.560193 CAGATCCTGAGGAGGGAGGA 59.440 60.000 7.50 0.00 42.67 3.71
241 242 1.120795 GGCAGATCCTGAGGAGGGAG 61.121 65.000 7.50 0.00 40.25 4.30
243 244 2.506061 CGGCAGATCCTGAGGAGGG 61.506 68.421 7.50 0.00 40.25 4.30
244 245 3.136750 CGGCAGATCCTGAGGAGG 58.863 66.667 7.50 0.00 41.39 4.30
245 246 0.825425 TAGCGGCAGATCCTGAGGAG 60.825 60.000 7.50 0.00 34.05 3.69
246 247 1.109920 GTAGCGGCAGATCCTGAGGA 61.110 60.000 2.43 2.43 32.44 3.71
247 248 1.365633 GTAGCGGCAGATCCTGAGG 59.634 63.158 1.45 0.00 32.44 3.86
248 249 0.249238 GTGTAGCGGCAGATCCTGAG 60.249 60.000 1.45 0.00 32.44 3.35
250 251 1.000827 CTAGTGTAGCGGCAGATCCTG 60.001 57.143 1.45 0.00 34.12 3.86
252 253 1.033574 ACTAGTGTAGCGGCAGATCC 58.966 55.000 1.45 0.00 0.00 3.36
256 257 2.094390 TGGTAAACTAGTGTAGCGGCAG 60.094 50.000 15.75 0.00 0.00 4.85
258 259 2.537401 CTGGTAAACTAGTGTAGCGGC 58.463 52.381 16.31 0.00 0.00 6.53
259 260 2.094390 TGCTGGTAAACTAGTGTAGCGG 60.094 50.000 21.98 21.98 32.66 5.52
260 261 3.226346 TGCTGGTAAACTAGTGTAGCG 57.774 47.619 15.75 11.90 32.66 4.26
261 262 5.411669 ACAAATGCTGGTAAACTAGTGTAGC 59.588 40.000 14.29 14.29 0.00 3.58
262 263 7.435068 AACAAATGCTGGTAAACTAGTGTAG 57.565 36.000 0.00 0.00 0.00 2.74
263 264 7.040961 GGAAACAAATGCTGGTAAACTAGTGTA 60.041 37.037 0.00 0.00 0.00 2.90
265 266 6.016276 AGGAAACAAATGCTGGTAAACTAGTG 60.016 38.462 0.00 0.00 0.00 2.74
266 267 6.068670 AGGAAACAAATGCTGGTAAACTAGT 58.931 36.000 0.00 0.00 0.00 2.57
267 268 6.575162 AGGAAACAAATGCTGGTAAACTAG 57.425 37.500 0.00 0.00 0.00 2.57
269 270 5.128663 ACAAGGAAACAAATGCTGGTAAACT 59.871 36.000 0.00 0.00 0.00 2.66
274 275 2.102925 CCACAAGGAAACAAATGCTGGT 59.897 45.455 0.00 0.00 36.89 4.00
275 276 2.758009 CCACAAGGAAACAAATGCTGG 58.242 47.619 0.00 0.00 36.89 4.85
276 277 2.137523 GCCACAAGGAAACAAATGCTG 58.862 47.619 0.00 0.00 36.89 4.41
277 278 2.036346 GAGCCACAAGGAAACAAATGCT 59.964 45.455 0.00 0.00 36.89 3.79
278 279 2.407090 GAGCCACAAGGAAACAAATGC 58.593 47.619 0.00 0.00 36.89 3.56
279 280 2.034558 ACGAGCCACAAGGAAACAAATG 59.965 45.455 0.00 0.00 36.89 2.32
280 281 2.306847 ACGAGCCACAAGGAAACAAAT 58.693 42.857 0.00 0.00 36.89 2.32
281 282 1.757682 ACGAGCCACAAGGAAACAAA 58.242 45.000 0.00 0.00 36.89 2.83
282 283 1.673920 GAACGAGCCACAAGGAAACAA 59.326 47.619 0.00 0.00 36.89 2.83
283 284 1.305201 GAACGAGCCACAAGGAAACA 58.695 50.000 0.00 0.00 36.89 2.83
284 285 1.264288 CTGAACGAGCCACAAGGAAAC 59.736 52.381 0.00 0.00 36.89 2.78
286 287 0.250295 CCTGAACGAGCCACAAGGAA 60.250 55.000 0.00 0.00 36.89 3.36
288 289 0.036010 ATCCTGAACGAGCCACAAGG 60.036 55.000 0.00 0.00 38.23 3.61
289 290 1.066573 AGATCCTGAACGAGCCACAAG 60.067 52.381 0.00 0.00 0.00 3.16
290 291 0.976641 AGATCCTGAACGAGCCACAA 59.023 50.000 0.00 0.00 0.00 3.33
293 294 1.219124 GCAGATCCTGAACGAGCCA 59.781 57.895 0.00 0.00 32.44 4.75
294 295 1.086634 GTGCAGATCCTGAACGAGCC 61.087 60.000 0.00 0.00 29.66 4.70
296 297 3.724508 ATAGTGCAGATCCTGAACGAG 57.275 47.619 0.00 0.00 44.32 4.18
297 298 4.207955 AGTATAGTGCAGATCCTGAACGA 58.792 43.478 0.00 0.00 44.32 3.85
298 299 4.576216 AGTATAGTGCAGATCCTGAACG 57.424 45.455 0.00 0.00 44.32 3.95
300 301 6.641169 CAGTAGTATAGTGCAGATCCTGAA 57.359 41.667 0.00 0.00 34.87 3.02
313 314 8.850007 TCACTTATCAGGTAGCAGTAGTATAG 57.150 38.462 0.00 0.00 0.00 1.31
315 316 9.233649 GTATCACTTATCAGGTAGCAGTAGTAT 57.766 37.037 0.00 0.00 0.00 2.12
317 318 7.291566 AGTATCACTTATCAGGTAGCAGTAGT 58.708 38.462 0.00 0.00 0.00 2.73
319 320 7.664731 GGTAGTATCACTTATCAGGTAGCAGTA 59.335 40.741 0.00 0.00 0.00 2.74
320 321 6.490721 GGTAGTATCACTTATCAGGTAGCAGT 59.509 42.308 0.00 0.00 0.00 4.40
321 322 6.717540 AGGTAGTATCACTTATCAGGTAGCAG 59.282 42.308 0.00 0.00 0.00 4.24
322 323 6.611785 AGGTAGTATCACTTATCAGGTAGCA 58.388 40.000 0.00 0.00 0.00 3.49
323 324 6.128227 CGAGGTAGTATCACTTATCAGGTAGC 60.128 46.154 0.00 0.00 0.00 3.58
324 325 6.935771 ACGAGGTAGTATCACTTATCAGGTAG 59.064 42.308 0.00 0.00 0.00 3.18
325 326 6.835174 ACGAGGTAGTATCACTTATCAGGTA 58.165 40.000 0.00 0.00 0.00 3.08
326 327 5.692928 ACGAGGTAGTATCACTTATCAGGT 58.307 41.667 0.00 0.00 0.00 4.00
327 328 6.128227 GCTACGAGGTAGTATCACTTATCAGG 60.128 46.154 4.86 0.00 38.30 3.86
328 329 6.128227 GGCTACGAGGTAGTATCACTTATCAG 60.128 46.154 4.86 0.00 38.30 2.90
331 332 5.878627 AGGCTACGAGGTAGTATCACTTAT 58.121 41.667 4.86 0.00 38.30 1.73
332 333 5.301835 AGGCTACGAGGTAGTATCACTTA 57.698 43.478 4.86 0.00 38.30 2.24
334 335 3.860968 AGGCTACGAGGTAGTATCACT 57.139 47.619 4.86 0.00 38.30 3.41
335 336 6.572167 AATTAGGCTACGAGGTAGTATCAC 57.428 41.667 0.00 0.00 38.30 3.06
336 337 7.148120 GCATAATTAGGCTACGAGGTAGTATCA 60.148 40.741 14.62 0.00 38.30 2.15
337 338 7.067251 AGCATAATTAGGCTACGAGGTAGTATC 59.933 40.741 22.29 0.00 42.08 2.24
338 339 6.890814 AGCATAATTAGGCTACGAGGTAGTAT 59.109 38.462 22.29 0.00 42.08 2.12
340 341 5.078256 AGCATAATTAGGCTACGAGGTAGT 58.922 41.667 22.29 0.00 42.08 2.73
343 344 3.258622 GGAGCATAATTAGGCTACGAGGT 59.741 47.826 23.46 0.98 44.13 3.85
344 345 3.258372 TGGAGCATAATTAGGCTACGAGG 59.742 47.826 24.99 0.00 46.40 4.63
345 346 4.489810 CTGGAGCATAATTAGGCTACGAG 58.510 47.826 24.99 19.41 46.40 4.18
346 347 3.306088 GCTGGAGCATAATTAGGCTACGA 60.306 47.826 24.99 15.16 46.40 3.43
348 349 3.008485 AGGCTGGAGCATAATTAGGCTAC 59.992 47.826 24.28 24.28 44.13 3.58
352 353 2.373169 TGGAGGCTGGAGCATAATTAGG 59.627 50.000 0.00 0.00 44.36 2.69
353 354 3.777106 TGGAGGCTGGAGCATAATTAG 57.223 47.619 0.00 0.00 44.36 1.73
355 356 2.551721 CGATGGAGGCTGGAGCATAATT 60.552 50.000 0.00 0.00 44.36 1.40
356 357 1.002888 CGATGGAGGCTGGAGCATAAT 59.997 52.381 0.00 0.00 44.36 1.28
357 358 0.394192 CGATGGAGGCTGGAGCATAA 59.606 55.000 0.00 0.00 44.36 1.90
358 359 1.475169 CCGATGGAGGCTGGAGCATA 61.475 60.000 0.00 0.00 44.36 3.14
359 360 2.815945 CCGATGGAGGCTGGAGCAT 61.816 63.158 0.00 0.00 44.36 3.79
360 361 3.473647 CCGATGGAGGCTGGAGCA 61.474 66.667 0.00 0.00 44.36 4.26
368 369 0.469331 TACTGGTAGGCCGATGGAGG 60.469 60.000 0.00 0.00 37.67 4.30
369 370 1.410004 TTACTGGTAGGCCGATGGAG 58.590 55.000 0.00 0.00 37.67 3.86
371 372 4.253685 CAATATTACTGGTAGGCCGATGG 58.746 47.826 0.00 0.00 37.67 3.51
372 373 4.253685 CCAATATTACTGGTAGGCCGATG 58.746 47.826 0.00 0.00 37.67 3.84
373 374 3.908103 ACCAATATTACTGGTAGGCCGAT 59.092 43.478 0.00 0.00 45.58 4.18
374 375 3.311091 ACCAATATTACTGGTAGGCCGA 58.689 45.455 0.00 0.00 45.58 5.54
375 376 3.764237 ACCAATATTACTGGTAGGCCG 57.236 47.619 0.00 0.00 45.58 6.13
380 381 7.706179 GCGTTAGTGTTACCAATATTACTGGTA 59.294 37.037 0.00 0.00 45.58 3.25
383 384 7.528481 TGCGTTAGTGTTACCAATATTACTG 57.472 36.000 0.00 0.00 0.00 2.74
384 385 7.982919 TGATGCGTTAGTGTTACCAATATTACT 59.017 33.333 0.00 0.00 0.00 2.24
385 386 8.060090 GTGATGCGTTAGTGTTACCAATATTAC 58.940 37.037 0.00 0.00 0.00 1.89
386 387 7.982919 AGTGATGCGTTAGTGTTACCAATATTA 59.017 33.333 0.00 0.00 0.00 0.98
387 388 6.821665 AGTGATGCGTTAGTGTTACCAATATT 59.178 34.615 0.00 0.00 0.00 1.28
389 390 5.726397 AGTGATGCGTTAGTGTTACCAATA 58.274 37.500 0.00 0.00 0.00 1.90
390 391 4.575885 AGTGATGCGTTAGTGTTACCAAT 58.424 39.130 0.00 0.00 0.00 3.16
391 392 3.991773 GAGTGATGCGTTAGTGTTACCAA 59.008 43.478 0.00 0.00 0.00 3.67
392 393 3.006003 TGAGTGATGCGTTAGTGTTACCA 59.994 43.478 0.00 0.00 0.00 3.25
393 394 3.581755 TGAGTGATGCGTTAGTGTTACC 58.418 45.455 0.00 0.00 0.00 2.85
395 396 5.333798 GCTTTTGAGTGATGCGTTAGTGTTA 60.334 40.000 0.00 0.00 0.00 2.41
396 397 4.554723 GCTTTTGAGTGATGCGTTAGTGTT 60.555 41.667 0.00 0.00 0.00 3.32
397 398 3.058914 GCTTTTGAGTGATGCGTTAGTGT 60.059 43.478 0.00 0.00 0.00 3.55
398 399 3.187227 AGCTTTTGAGTGATGCGTTAGTG 59.813 43.478 0.00 0.00 0.00 2.74
399 400 3.403038 AGCTTTTGAGTGATGCGTTAGT 58.597 40.909 0.00 0.00 0.00 2.24
400 401 4.201724 GGTAGCTTTTGAGTGATGCGTTAG 60.202 45.833 0.00 0.00 0.00 2.34
401 402 3.682858 GGTAGCTTTTGAGTGATGCGTTA 59.317 43.478 0.00 0.00 0.00 3.18
402 403 2.484264 GGTAGCTTTTGAGTGATGCGTT 59.516 45.455 0.00 0.00 0.00 4.84
403 404 2.076863 GGTAGCTTTTGAGTGATGCGT 58.923 47.619 0.00 0.00 0.00 5.24
404 405 2.349886 GAGGTAGCTTTTGAGTGATGCG 59.650 50.000 0.00 0.00 0.00 4.73
405 406 3.604582 AGAGGTAGCTTTTGAGTGATGC 58.395 45.455 0.00 0.00 0.00 3.91
406 407 6.566197 AAAAGAGGTAGCTTTTGAGTGATG 57.434 37.500 0.00 0.00 44.10 3.07
408 409 6.485648 GGTAAAAAGAGGTAGCTTTTGAGTGA 59.514 38.462 0.00 0.00 44.79 3.41
410 411 5.768662 GGGTAAAAAGAGGTAGCTTTTGAGT 59.231 40.000 0.00 0.00 44.79 3.41
411 412 5.768164 TGGGTAAAAAGAGGTAGCTTTTGAG 59.232 40.000 0.00 0.00 44.79 3.02
412 413 5.533528 GTGGGTAAAAAGAGGTAGCTTTTGA 59.466 40.000 0.00 0.00 44.79 2.69
413 414 5.535030 AGTGGGTAAAAAGAGGTAGCTTTTG 59.465 40.000 0.00 0.00 44.79 2.44
414 415 5.702266 AGTGGGTAAAAAGAGGTAGCTTTT 58.298 37.500 0.00 0.00 46.81 2.27
415 416 5.320488 AGTGGGTAAAAAGAGGTAGCTTT 57.680 39.130 0.00 0.00 39.65 3.51
416 417 4.995624 AGTGGGTAAAAAGAGGTAGCTT 57.004 40.909 0.00 0.00 0.00 3.74
417 418 5.046520 CACTAGTGGGTAAAAAGAGGTAGCT 60.047 44.000 15.49 0.00 0.00 3.32
418 419 5.176592 CACTAGTGGGTAAAAAGAGGTAGC 58.823 45.833 15.49 0.00 0.00 3.58
419 420 6.014840 TCACACTAGTGGGTAAAAAGAGGTAG 60.015 42.308 24.16 0.00 45.91 3.18
421 422 4.657039 TCACACTAGTGGGTAAAAAGAGGT 59.343 41.667 24.16 0.00 45.91 3.85
435 436 4.342378 AGTCATTGTCACACTCACACTAGT 59.658 41.667 0.00 0.00 0.00 2.57
436 437 4.876125 AGTCATTGTCACACTCACACTAG 58.124 43.478 0.00 0.00 0.00 2.57
437 438 4.584743 AGAGTCATTGTCACACTCACACTA 59.415 41.667 6.14 0.00 39.29 2.74
438 439 3.386078 AGAGTCATTGTCACACTCACACT 59.614 43.478 6.14 0.00 39.29 3.55
440 441 3.384467 TCAGAGTCATTGTCACACTCACA 59.616 43.478 6.14 0.00 39.29 3.58
441 442 3.738282 GTCAGAGTCATTGTCACACTCAC 59.262 47.826 6.14 0.00 39.29 3.51
442 443 3.384467 TGTCAGAGTCATTGTCACACTCA 59.616 43.478 6.14 0.00 39.29 3.41
443 444 3.982475 TGTCAGAGTCATTGTCACACTC 58.018 45.455 0.00 0.00 37.42 3.51
446 447 2.759191 GCTGTCAGAGTCATTGTCACA 58.241 47.619 3.32 0.00 0.00 3.58
447 448 1.723542 CGCTGTCAGAGTCATTGTCAC 59.276 52.381 3.32 0.00 0.00 3.67
448 449 1.337167 CCGCTGTCAGAGTCATTGTCA 60.337 52.381 3.32 0.00 0.00 3.58
449 450 1.337260 ACCGCTGTCAGAGTCATTGTC 60.337 52.381 3.32 0.00 0.00 3.18
451 452 2.654749 TACCGCTGTCAGAGTCATTG 57.345 50.000 3.32 0.00 0.00 2.82
453 454 3.678056 TTTTACCGCTGTCAGAGTCAT 57.322 42.857 3.32 0.00 0.00 3.06
454 455 3.678056 ATTTTACCGCTGTCAGAGTCA 57.322 42.857 3.32 0.00 0.00 3.41
455 456 6.535508 AGAAATATTTTACCGCTGTCAGAGTC 59.464 38.462 3.32 0.00 0.00 3.36
456 457 6.407202 AGAAATATTTTACCGCTGTCAGAGT 58.593 36.000 3.32 2.55 0.00 3.24
457 458 6.910536 AGAAATATTTTACCGCTGTCAGAG 57.089 37.500 3.32 0.00 0.00 3.35
458 459 7.681939 AAAGAAATATTTTACCGCTGTCAGA 57.318 32.000 3.32 0.00 0.00 3.27
459 460 8.237267 AGAAAAGAAATATTTTACCGCTGTCAG 58.763 33.333 1.43 0.00 32.62 3.51
460 461 8.020819 CAGAAAAGAAATATTTTACCGCTGTCA 58.979 33.333 1.43 0.00 32.62 3.58
461 462 7.008357 GCAGAAAAGAAATATTTTACCGCTGTC 59.992 37.037 1.43 2.53 32.62 3.51
462 463 6.806739 GCAGAAAAGAAATATTTTACCGCTGT 59.193 34.615 1.43 0.00 32.62 4.40
463 464 7.029563 AGCAGAAAAGAAATATTTTACCGCTG 58.970 34.615 1.43 8.94 33.38 5.18
466 467 9.405587 TGAAAGCAGAAAAGAAATATTTTACCG 57.594 29.630 1.43 0.00 32.62 4.02
474 475 9.868277 TTCAAAACTGAAAGCAGAAAAGAAATA 57.132 25.926 0.00 0.00 45.17 1.40
475 476 8.659491 GTTCAAAACTGAAAGCAGAAAAGAAAT 58.341 29.630 0.00 0.00 45.17 2.17
476 477 7.655328 TGTTCAAAACTGAAAGCAGAAAAGAAA 59.345 29.630 0.00 0.00 45.17 2.52
477 478 7.116233 GTGTTCAAAACTGAAAGCAGAAAAGAA 59.884 33.333 0.00 0.00 45.17 2.52
478 479 6.586082 GTGTTCAAAACTGAAAGCAGAAAAGA 59.414 34.615 0.00 0.00 45.17 2.52
479 480 6.183360 GGTGTTCAAAACTGAAAGCAGAAAAG 60.183 38.462 0.00 0.00 45.17 2.27
480 481 5.637387 GGTGTTCAAAACTGAAAGCAGAAAA 59.363 36.000 0.00 0.00 45.17 2.29
481 482 5.047377 AGGTGTTCAAAACTGAAAGCAGAAA 60.047 36.000 0.00 0.00 45.17 2.52
482 483 4.462483 AGGTGTTCAAAACTGAAAGCAGAA 59.538 37.500 0.00 0.00 45.17 3.02
483 484 4.016444 AGGTGTTCAAAACTGAAAGCAGA 58.984 39.130 0.00 0.00 45.17 4.26
485 486 3.675775 GCAGGTGTTCAAAACTGAAAGCA 60.676 43.478 0.00 0.00 37.60 3.91
487 488 4.108699 TGCAGGTGTTCAAAACTGAAAG 57.891 40.909 0.00 0.00 42.29 2.62
488 489 4.021544 ACTTGCAGGTGTTCAAAACTGAAA 60.022 37.500 0.00 0.00 32.86 2.69
490 491 3.088532 ACTTGCAGGTGTTCAAAACTGA 58.911 40.909 0.00 0.00 32.86 3.41
491 492 3.508744 ACTTGCAGGTGTTCAAAACTG 57.491 42.857 0.00 0.00 0.00 3.16
492 493 5.652994 TTAACTTGCAGGTGTTCAAAACT 57.347 34.783 0.65 0.00 0.00 2.66
493 494 5.867174 AGTTTAACTTGCAGGTGTTCAAAAC 59.133 36.000 0.65 9.95 30.75 2.43
494 495 6.031751 AGTTTAACTTGCAGGTGTTCAAAA 57.968 33.333 0.65 0.00 0.00 2.44
496 497 5.652994 AAGTTTAACTTGCAGGTGTTCAA 57.347 34.783 9.77 0.00 37.00 2.69
497 498 5.652994 AAAGTTTAACTTGCAGGTGTTCA 57.347 34.783 11.35 0.00 38.66 3.18
498 499 9.341899 CATATAAAGTTTAACTTGCAGGTGTTC 57.658 33.333 11.35 0.00 38.66 3.18
499 500 8.856103 ACATATAAAGTTTAACTTGCAGGTGTT 58.144 29.630 11.35 4.69 38.66 3.32
500 501 8.404107 ACATATAAAGTTTAACTTGCAGGTGT 57.596 30.769 11.35 9.87 38.66 4.16
514 515 9.784531 CATCCATGACCTCTTACATATAAAGTT 57.215 33.333 0.00 0.00 0.00 2.66
518 519 9.948964 CATTCATCCATGACCTCTTACATATAA 57.051 33.333 0.00 0.00 36.36 0.98
520 521 7.982252 ACATTCATCCATGACCTCTTACATAT 58.018 34.615 0.00 0.00 36.36 1.78
521 522 7.379059 ACATTCATCCATGACCTCTTACATA 57.621 36.000 0.00 0.00 36.36 2.29
523 524 5.698741 ACATTCATCCATGACCTCTTACA 57.301 39.130 0.00 0.00 36.36 2.41
524 525 6.821388 ACTACATTCATCCATGACCTCTTAC 58.179 40.000 0.00 0.00 36.36 2.34
526 527 5.965033 ACTACATTCATCCATGACCTCTT 57.035 39.130 0.00 0.00 36.36 2.85
528 529 5.641209 GCATACTACATTCATCCATGACCTC 59.359 44.000 0.00 0.00 36.36 3.85
529 530 5.309020 AGCATACTACATTCATCCATGACCT 59.691 40.000 0.00 0.00 36.36 3.85
530 531 5.410746 CAGCATACTACATTCATCCATGACC 59.589 44.000 0.00 0.00 36.36 4.02
531 532 5.106791 GCAGCATACTACATTCATCCATGAC 60.107 44.000 0.00 0.00 36.36 3.06
532 533 4.999311 GCAGCATACTACATTCATCCATGA 59.001 41.667 0.00 0.00 34.44 3.07
536 537 4.384056 ACAGCAGCATACTACATTCATCC 58.616 43.478 0.00 0.00 0.00 3.51
537 538 7.664082 AATACAGCAGCATACTACATTCATC 57.336 36.000 0.00 0.00 0.00 2.92
538 539 7.329471 CGTAATACAGCAGCATACTACATTCAT 59.671 37.037 0.00 0.00 0.00 2.57
539 540 6.640907 CGTAATACAGCAGCATACTACATTCA 59.359 38.462 0.00 0.00 0.00 2.57
540 541 6.641314 ACGTAATACAGCAGCATACTACATTC 59.359 38.462 0.00 0.00 0.00 2.67
543 544 5.509716 ACGTAATACAGCAGCATACTACA 57.490 39.130 0.00 0.00 0.00 2.74
544 545 4.611782 CGACGTAATACAGCAGCATACTAC 59.388 45.833 0.00 0.00 0.00 2.73
545 546 4.319984 CCGACGTAATACAGCAGCATACTA 60.320 45.833 0.00 0.00 0.00 1.82
546 547 3.550233 CCGACGTAATACAGCAGCATACT 60.550 47.826 0.00 0.00 0.00 2.12
547 548 2.724690 CCGACGTAATACAGCAGCATAC 59.275 50.000 0.00 0.00 0.00 2.39
548 549 2.359848 ACCGACGTAATACAGCAGCATA 59.640 45.455 0.00 0.00 0.00 3.14
549 550 1.136305 ACCGACGTAATACAGCAGCAT 59.864 47.619 0.00 0.00 0.00 3.79
550 551 0.528924 ACCGACGTAATACAGCAGCA 59.471 50.000 0.00 0.00 0.00 4.41
551 552 2.480224 TACCGACGTAATACAGCAGC 57.520 50.000 0.00 0.00 0.00 5.25
552 553 7.008086 GCTATTAATACCGACGTAATACAGCAG 59.992 40.741 0.00 0.00 0.00 4.24
553 554 6.803320 GCTATTAATACCGACGTAATACAGCA 59.197 38.462 0.00 0.00 0.00 4.41
554 555 6.803320 TGCTATTAATACCGACGTAATACAGC 59.197 38.462 0.00 0.00 0.00 4.40
555 556 8.019669 ACTGCTATTAATACCGACGTAATACAG 58.980 37.037 14.85 14.85 32.46 2.74
556 557 7.874940 ACTGCTATTAATACCGACGTAATACA 58.125 34.615 0.00 0.00 0.00 2.29
560 561 9.019764 GTTTTACTGCTATTAATACCGACGTAA 57.980 33.333 0.00 0.00 0.00 3.18
561 562 8.187480 TGTTTTACTGCTATTAATACCGACGTA 58.813 33.333 0.00 0.00 0.00 3.57
562 563 7.035004 TGTTTTACTGCTATTAATACCGACGT 58.965 34.615 0.00 0.00 0.00 4.34
563 564 7.453980 TGTTTTACTGCTATTAATACCGACG 57.546 36.000 0.00 0.00 0.00 5.12
574 575 8.579863 AGCAGAAAGAAAATGTTTTACTGCTAT 58.420 29.630 23.38 12.33 43.12 2.97
575 576 7.940850 AGCAGAAAGAAAATGTTTTACTGCTA 58.059 30.769 23.38 0.00 43.12 3.49
576 577 6.809869 AGCAGAAAGAAAATGTTTTACTGCT 58.190 32.000 21.39 21.39 41.92 4.24
578 579 8.807667 ATGAGCAGAAAGAAAATGTTTTACTG 57.192 30.769 0.00 0.00 0.00 2.74
579 580 9.468532 GAATGAGCAGAAAGAAAATGTTTTACT 57.531 29.630 0.00 0.00 0.00 2.24
580 581 9.248291 TGAATGAGCAGAAAGAAAATGTTTTAC 57.752 29.630 0.00 0.00 0.00 2.01
582 583 7.983484 ACTGAATGAGCAGAAAGAAAATGTTTT 59.017 29.630 0.00 0.00 39.20 2.43
583 584 7.495055 ACTGAATGAGCAGAAAGAAAATGTTT 58.505 30.769 0.00 0.00 39.20 2.83
585 586 6.645790 ACTGAATGAGCAGAAAGAAAATGT 57.354 33.333 0.00 0.00 39.20 2.71
586 587 7.941795 AAACTGAATGAGCAGAAAGAAAATG 57.058 32.000 0.00 0.00 39.20 2.32
587 588 8.199449 TCAAAACTGAATGAGCAGAAAGAAAAT 58.801 29.630 0.00 0.00 39.20 1.82
588 589 7.546358 TCAAAACTGAATGAGCAGAAAGAAAA 58.454 30.769 0.00 0.00 39.20 2.29
592 593 6.197842 GTGTTCAAAACTGAATGAGCAGAAAG 59.802 38.462 0.00 0.00 37.44 2.62
593 594 6.035843 GTGTTCAAAACTGAATGAGCAGAAA 58.964 36.000 0.00 0.00 37.44 2.52
594 595 5.450412 GGTGTTCAAAACTGAATGAGCAGAA 60.450 40.000 0.00 0.00 37.44 3.02
595 596 4.036734 GGTGTTCAAAACTGAATGAGCAGA 59.963 41.667 0.00 0.00 37.44 4.26
596 597 4.293415 GGTGTTCAAAACTGAATGAGCAG 58.707 43.478 0.00 0.00 37.44 4.24
597 598 3.243035 CGGTGTTCAAAACTGAATGAGCA 60.243 43.478 0.00 0.00 34.92 4.26
602 603 6.399639 AATTACCGGTGTTCAAAACTGAAT 57.600 33.333 19.93 0.55 0.00 2.57
603 604 5.838531 AATTACCGGTGTTCAAAACTGAA 57.161 34.783 19.93 0.00 0.00 3.02
604 605 5.450688 CCAAATTACCGGTGTTCAAAACTGA 60.451 40.000 19.93 0.00 0.00 3.41
605 606 4.742659 CCAAATTACCGGTGTTCAAAACTG 59.257 41.667 19.93 6.08 0.00 3.16
606 607 4.202172 CCCAAATTACCGGTGTTCAAAACT 60.202 41.667 19.93 0.00 0.00 2.66
608 609 3.958798 TCCCAAATTACCGGTGTTCAAAA 59.041 39.130 19.93 1.67 0.00 2.44
609 610 3.318557 GTCCCAAATTACCGGTGTTCAAA 59.681 43.478 19.93 2.57 0.00 2.69
613 614 1.525941 CGTCCCAAATTACCGGTGTT 58.474 50.000 19.93 9.47 0.00 3.32
614 615 0.956902 GCGTCCCAAATTACCGGTGT 60.957 55.000 19.93 2.23 0.00 4.16
617 618 1.373590 CCTGCGTCCCAAATTACCGG 61.374 60.000 0.00 0.00 0.00 5.28
618 619 1.373590 CCCTGCGTCCCAAATTACCG 61.374 60.000 0.00 0.00 0.00 4.02
619 620 0.034863 TCCCTGCGTCCCAAATTACC 60.035 55.000 0.00 0.00 0.00 2.85
621 622 0.988832 ACTCCCTGCGTCCCAAATTA 59.011 50.000 0.00 0.00 0.00 1.40
622 623 0.988832 TACTCCCTGCGTCCCAAATT 59.011 50.000 0.00 0.00 0.00 1.82
623 624 1.134098 CATACTCCCTGCGTCCCAAAT 60.134 52.381 0.00 0.00 0.00 2.32
625 626 0.907704 ACATACTCCCTGCGTCCCAA 60.908 55.000 0.00 0.00 0.00 4.12
626 627 0.032912 TACATACTCCCTGCGTCCCA 60.033 55.000 0.00 0.00 0.00 4.37
627 628 1.068741 CTTACATACTCCCTGCGTCCC 59.931 57.143 0.00 0.00 0.00 4.46
628 629 2.029623 TCTTACATACTCCCTGCGTCC 58.970 52.381 0.00 0.00 0.00 4.79
629 630 2.034812 CCTCTTACATACTCCCTGCGTC 59.965 54.545 0.00 0.00 0.00 5.19
630 631 2.032620 CCTCTTACATACTCCCTGCGT 58.967 52.381 0.00 0.00 0.00 5.24
631 632 2.032620 ACCTCTTACATACTCCCTGCG 58.967 52.381 0.00 0.00 0.00 5.18
632 633 3.031736 TGACCTCTTACATACTCCCTGC 58.968 50.000 0.00 0.00 0.00 4.85
633 634 4.502259 GCATGACCTCTTACATACTCCCTG 60.502 50.000 0.00 0.00 0.00 4.45
637 3620 4.045104 CGTGCATGACCTCTTACATACTC 58.955 47.826 0.00 0.00 0.00 2.59
665 3648 5.513849 TCGACACACGTTTTATAGCATACTG 59.486 40.000 0.00 0.00 43.13 2.74
712 3695 5.239306 TCCTGAAAAGTTGCATACAGAACAG 59.761 40.000 0.00 0.00 0.00 3.16
717 3700 7.023575 GTGTAATCCTGAAAAGTTGCATACAG 58.976 38.462 0.00 0.00 0.00 2.74
809 3793 2.208431 GCGCTCTTGTCTTGCTATGAT 58.792 47.619 0.00 0.00 0.00 2.45
813 3797 0.318441 AGTGCGCTCTTGTCTTGCTA 59.682 50.000 9.73 0.00 0.00 3.49
815 3799 1.495069 GAGTGCGCTCTTGTCTTGC 59.505 57.895 20.07 0.00 38.66 4.01
828 3812 1.609208 TTTTGGCCTGAAGAGAGTGC 58.391 50.000 3.32 0.00 0.00 4.40
832 3816 3.157087 GTGGATTTTTGGCCTGAAGAGA 58.843 45.455 3.32 0.00 0.00 3.10
834 3818 2.892852 CAGTGGATTTTTGGCCTGAAGA 59.107 45.455 3.32 0.00 0.00 2.87
845 3829 7.442062 CAGAAAAATTAAGGCACAGTGGATTTT 59.558 33.333 1.84 0.00 0.00 1.82
887 3871 6.308766 GCTGGTTTTAAGCATAGAAACATGTG 59.691 38.462 0.00 0.00 40.52 3.21
905 3889 0.550914 TGTTCCTGAGGTGCTGGTTT 59.449 50.000 0.00 0.00 36.96 3.27
924 3915 6.534475 AGGAAACATGACAATGCACATATT 57.466 33.333 0.00 0.00 37.29 1.28
946 3943 8.366401 ACATGAGATAGATTGAATGGTGACTAG 58.634 37.037 0.00 0.00 0.00 2.57
960 3957 6.552725 TGAGGTGCTAAGAACATGAGATAGAT 59.447 38.462 0.00 0.00 0.00 1.98
1090 4114 1.452833 GGTCTGCCCAGCCTTGATC 60.453 63.158 0.00 0.00 0.00 2.92
1110 4134 0.815734 AATGAAGCAGCACATCTGGC 59.184 50.000 0.00 0.00 43.06 4.85
1165 4534 1.148273 AGGTGTGAGCGAAGGCAAA 59.852 52.632 0.00 0.00 43.41 3.68
1178 4547 2.282040 GCCAAGAGCAGCAGGTGT 60.282 61.111 0.66 0.00 42.97 4.16
1199 4568 3.648009 GATGGATACGAGAAGAAGGCAG 58.352 50.000 0.00 0.00 42.51 4.85
1271 4641 1.153489 CATGGAGAGTGCACGGAGG 60.153 63.158 12.01 0.00 0.00 4.30
1273 4646 1.184970 TGACATGGAGAGTGCACGGA 61.185 55.000 12.01 0.00 0.00 4.69
1353 4729 5.671941 ACTAGGGGAATATGGTAGCCAATA 58.328 41.667 0.00 0.00 36.95 1.90
1365 4741 7.255871 GCTCGAGAAAGATTAACTAGGGGAATA 60.256 40.741 18.75 0.00 0.00 1.75
1467 4847 6.732531 TCAACAATGAGACATGATCTGTTC 57.267 37.500 0.00 0.00 38.00 3.18
1604 4984 2.220653 ACTGTGGGATTCATTGGTGG 57.779 50.000 0.00 0.00 0.00 4.61
1763 5143 1.601914 CCATCATCCGTACGCGAATCA 60.602 52.381 15.93 0.00 41.33 2.57
2330 9208 6.049149 TCCAATTATAACAGCAGAGTAGTGC 58.951 40.000 0.00 0.00 44.35 4.40
2389 9267 2.297033 ACTGCCATGAATTGTGAACCAC 59.703 45.455 0.00 0.00 34.56 4.16
2425 9303 2.686915 CTGGCTGGCTCAAAGATAAAGG 59.313 50.000 2.00 0.00 0.00 3.11
2560 9450 7.013274 GGAGCACTAAAAATATACCTTGCATGA 59.987 37.037 0.00 0.00 0.00 3.07
2571 9461 6.441274 CGCATGAATGGAGCACTAAAAATAT 58.559 36.000 0.00 0.00 0.00 1.28
2609 9499 4.994907 TGAAGAAATCAGGATTGGCATG 57.005 40.909 0.00 0.00 33.04 4.06
2643 9559 6.648192 ACTCTTTGGAGATAAGACATTCAGG 58.352 40.000 0.00 0.00 41.86 3.86
2681 9597 9.503399 CTTAGGACCTACAGTAAGAAACAATTT 57.497 33.333 0.00 0.00 0.00 1.82
2905 9833 2.533266 TGTCACAGGCTCTCACTTTC 57.467 50.000 0.00 0.00 0.00 2.62
2974 9902 2.789092 GCCAATGTCAATTCGAGAAGCG 60.789 50.000 0.00 0.00 42.69 4.68
3024 9952 2.681848 GCACAGTGATTGATCTCCCTTG 59.318 50.000 4.15 0.00 0.00 3.61
3050 9978 2.562912 GGCAATGACAGCACGTGG 59.437 61.111 18.88 3.72 0.00 4.94
3072 10000 4.757149 AGATCAAAGCAGAGTACACCAAAC 59.243 41.667 0.00 0.00 0.00 2.93
3129 10057 0.451383 CGACTCACCTGAGCAGAGAG 59.549 60.000 14.27 14.27 45.79 3.20
3148 10076 0.036010 TAGGTTTGCTCTCCTGCAGC 60.036 55.000 8.66 0.00 44.27 5.25
3151 10079 2.801342 CGAGATAGGTTTGCTCTCCTGC 60.801 54.545 4.82 0.00 35.51 4.85
3155 10083 4.278669 TGTATCCGAGATAGGTTTGCTCTC 59.721 45.833 0.00 0.00 33.59 3.20
3173 10101 4.883585 TGATGAATTTCTGGTGCCTGTATC 59.116 41.667 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.