Multiple sequence alignment - TraesCS7D01G037200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G037200 chr7D 100.000 4590 0 0 1 4590 18884765 18880176 0.000000e+00 8477.0
1 TraesCS7D01G037200 chr7D 82.270 282 41 6 3275 3550 18921452 18921730 7.680000e-58 235.0
2 TraesCS7D01G037200 chr7D 93.617 47 3 0 22 68 21001100 21001054 2.290000e-08 71.3
3 TraesCS7D01G037200 chr7D 100.000 28 0 0 4388 4415 5834410 5834383 8.000000e-03 52.8
4 TraesCS7D01G037200 chr7A 87.130 2401 211 52 65 2432 19259747 19257412 0.000000e+00 2632.0
5 TraesCS7D01G037200 chr7A 89.881 840 61 12 3090 3912 19254228 19253396 0.000000e+00 1059.0
6 TraesCS7D01G037200 chr7A 85.117 598 44 19 4027 4590 19253380 19252794 1.850000e-158 569.0
7 TraesCS7D01G037200 chr7A 94.737 342 17 1 2725 3066 19254621 19254281 8.740000e-147 531.0
8 TraesCS7D01G037200 chr7A 82.133 375 51 11 3275 3637 19367924 19368294 1.600000e-79 307.0
9 TraesCS7D01G037200 chr7A 91.250 160 12 2 1 159 19262267 19262109 2.780000e-52 217.0
10 TraesCS7D01G037200 chr7A 84.884 172 22 4 3418 3589 19268216 19268049 2.200000e-38 171.0
11 TraesCS7D01G037200 chr7A 88.235 68 4 3 1 66 498593572 498593637 1.370000e-10 78.7
12 TraesCS7D01G037200 chr4A 89.422 1730 142 21 794 2508 713115376 713117079 0.000000e+00 2143.0
13 TraesCS7D01G037200 chr4A 87.950 722 48 18 32 736 713114678 713115377 0.000000e+00 815.0
14 TraesCS7D01G037200 chr4A 93.769 337 19 1 2665 3001 713117082 713117416 5.300000e-139 505.0
15 TraesCS7D01G037200 chr4A 83.378 373 53 8 3269 3636 713117479 713117847 2.050000e-88 337.0
16 TraesCS7D01G037200 chr4A 83.333 330 47 6 3315 3637 713364400 713364728 9.650000e-77 298.0
17 TraesCS7D01G037200 chr4A 77.326 344 46 24 977 1306 713359113 713359438 1.700000e-39 174.0
18 TraesCS7D01G037200 chr4A 100.000 28 0 0 4388 4415 734342096 734342123 8.000000e-03 52.8
19 TraesCS7D01G037200 chr5A 92.537 67 3 2 1 66 466009802 466009867 1.360000e-15 95.3
20 TraesCS7D01G037200 chr5A 88.462 52 6 0 17 68 7630727 7630778 3.830000e-06 63.9
21 TraesCS7D01G037200 chr5A 100.000 30 0 0 4386 4415 27939629 27939600 6.420000e-04 56.5
22 TraesCS7D01G037200 chr2B 97.674 43 1 0 22 64 496075570 496075612 1.770000e-09 75.0
23 TraesCS7D01G037200 chr2D 88.235 51 6 0 1 51 348192989 348192939 1.380000e-05 62.1
24 TraesCS7D01G037200 chr2D 100.000 32 0 0 4384 4415 5088951 5088920 4.960000e-05 60.2
25 TraesCS7D01G037200 chr2A 82.609 69 8 3 2 66 474306443 474306375 1.780000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G037200 chr7D 18880176 18884765 4589 True 8477.0 8477 100.00000 1 4590 1 chr7D.!!$R2 4589
1 TraesCS7D01G037200 chr7A 19252794 19262267 9473 True 1001.6 2632 89.62300 1 4590 5 chr7A.!!$R2 4589
2 TraesCS7D01G037200 chr4A 713114678 713117847 3169 False 950.0 2143 88.62975 32 3636 4 chr4A.!!$F4 3604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 2951 0.179073 CTAGATCAACCCGTGCCAGG 60.179 60.0 0.0 0.0 0.00 4.45 F
1154 3657 0.531657 CCCTCTCACACAGCTCTCTG 59.468 60.0 0.0 0.0 45.71 3.35 F
1310 3813 0.841289 AAGGTCGAACCAGAACCCAA 59.159 50.0 0.0 0.0 41.95 4.12 F
3083 8241 0.409484 AATTCCCCCTGTTCCCAGTG 59.591 55.0 0.0 0.0 36.95 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 4285 0.318441 TGCTTCAGGTCAGAGTTCCG 59.682 55.0 0.00 0.0 0.00 4.30 R
2469 4999 0.032615 AGGAAACCACAAACTGGGCA 60.033 50.0 0.00 0.0 45.78 5.36 R
3243 8430 0.106268 TGAAGCTTGCCTGGTTTCCA 60.106 50.0 2.10 0.0 0.00 3.53 R
4546 9784 0.179089 ACGACAGCATGCAGATCTCC 60.179 55.0 21.98 0.5 42.53 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 166 3.732849 GGCTAGGTTGGCCTGCCT 61.733 66.667 19.81 19.81 46.37 4.75
163 167 2.356667 GCTAGGTTGGCCTGCCTT 59.643 61.111 20.83 8.17 46.47 4.35
167 171 2.158667 GCTAGGTTGGCCTGCCTTTATA 60.159 50.000 20.83 5.37 46.47 0.98
389 2874 1.003573 GATCCACCCTCACCCTCCT 59.996 63.158 0.00 0.00 0.00 3.69
390 2875 1.307343 ATCCACCCTCACCCTCCTG 60.307 63.158 0.00 0.00 0.00 3.86
412 2897 3.034635 TCCCCTGATCTAGTTTGCTCTC 58.965 50.000 0.00 0.00 0.00 3.20
456 2941 6.752351 TCAACGTTAGATGCTTCTAGATCAAC 59.248 38.462 0.00 5.94 35.88 3.18
457 2942 5.593010 ACGTTAGATGCTTCTAGATCAACC 58.407 41.667 9.09 0.00 35.88 3.77
458 2943 4.985409 CGTTAGATGCTTCTAGATCAACCC 59.015 45.833 9.09 0.00 35.88 4.11
459 2944 3.742433 AGATGCTTCTAGATCAACCCG 57.258 47.619 0.00 0.00 0.00 5.28
460 2945 3.034635 AGATGCTTCTAGATCAACCCGT 58.965 45.455 0.00 0.00 0.00 5.28
461 2946 2.672961 TGCTTCTAGATCAACCCGTG 57.327 50.000 0.00 0.00 0.00 4.94
462 2947 1.291132 GCTTCTAGATCAACCCGTGC 58.709 55.000 0.00 0.00 0.00 5.34
463 2948 1.941325 CTTCTAGATCAACCCGTGCC 58.059 55.000 0.00 0.00 0.00 5.01
464 2949 1.207089 CTTCTAGATCAACCCGTGCCA 59.793 52.381 0.00 0.00 0.00 4.92
465 2950 0.824109 TCTAGATCAACCCGTGCCAG 59.176 55.000 0.00 0.00 0.00 4.85
466 2951 0.179073 CTAGATCAACCCGTGCCAGG 60.179 60.000 0.00 0.00 0.00 4.45
558 3054 1.352687 GCCTTCCTTCCTTCCTTCAGT 59.647 52.381 0.00 0.00 0.00 3.41
566 3062 4.518249 CTTCCTTCCTTCAGTAATGGACC 58.482 47.826 0.00 0.00 0.00 4.46
567 3063 3.803340 TCCTTCCTTCAGTAATGGACCT 58.197 45.455 0.00 0.00 0.00 3.85
627 3123 3.496130 GGATTCATTATCGTGGACTGCTG 59.504 47.826 0.00 0.00 33.82 4.41
693 3189 3.949754 TCCGTCTAGTATGTAGGTTGGTG 59.050 47.826 0.00 0.00 0.00 4.17
721 3217 3.259064 CAAGCATGCTTGGATTCCTTTG 58.741 45.455 40.70 20.55 46.88 2.77
728 3226 5.612725 TGCTTGGATTCCTTTGTTCTTTT 57.387 34.783 3.95 0.00 0.00 2.27
736 3234 6.368791 GGATTCCTTTGTTCTTTTATGCAACC 59.631 38.462 0.00 0.00 0.00 3.77
760 3258 8.100791 ACCTGTGTTGTGTGTTTATATCTACAT 58.899 33.333 0.00 0.00 0.00 2.29
761 3259 9.594478 CCTGTGTTGTGTGTTTATATCTACATA 57.406 33.333 0.00 0.00 0.00 2.29
763 3261 9.930693 TGTGTTGTGTGTTTATATCTACATACA 57.069 29.630 12.61 12.61 42.23 2.29
809 3307 1.641577 GGCACATCGGTTCTCTGTAC 58.358 55.000 0.00 0.00 0.00 2.90
814 3312 2.001361 ATCGGTTCTCTGTACGCCCG 62.001 60.000 0.00 0.00 36.83 6.13
820 3318 0.739462 TCTCTGTACGCCCGCATTTG 60.739 55.000 0.00 0.00 0.00 2.32
822 3320 1.743623 CTGTACGCCCGCATTTGGA 60.744 57.895 0.00 0.00 0.00 3.53
862 3360 3.535280 TTTGTGTCTGTGTGCTCACTA 57.465 42.857 18.85 5.58 44.14 2.74
867 3365 4.098807 TGTGTCTGTGTGCTCACTACTTTA 59.901 41.667 18.85 6.44 44.14 1.85
875 3373 6.036735 TGTGTGCTCACTACTTTAAAACTGTC 59.963 38.462 18.85 0.00 44.14 3.51
878 3376 5.236478 TGCTCACTACTTTAAAACTGTCTGC 59.764 40.000 0.00 0.00 0.00 4.26
906 3404 2.104170 AGTACCTGCTCTGCTCTAACC 58.896 52.381 0.00 0.00 0.00 2.85
983 3483 3.706594 CCCTAGATACTCCTGACTGCAAA 59.293 47.826 0.00 0.00 0.00 3.68
991 3491 1.098050 CCTGACTGCAAATAGGTGCC 58.902 55.000 0.00 0.00 44.26 5.01
992 3492 1.340405 CCTGACTGCAAATAGGTGCCT 60.340 52.381 0.00 0.00 44.26 4.75
1023 3523 3.504204 GATGCCTGGATCCTGCCCC 62.504 68.421 19.88 10.55 0.00 5.80
1026 3526 3.554342 CCTGGATCCTGCCCCTCG 61.554 72.222 14.23 0.00 0.00 4.63
1031 3534 4.779733 ATCCTGCCCCTCGACGGT 62.780 66.667 0.00 0.00 0.00 4.83
1071 3574 3.933722 CCCATCTGCCTCGCCGAT 61.934 66.667 0.00 0.00 33.01 4.18
1111 3614 1.751143 TTCCTCTCCCACCCTCACCT 61.751 60.000 0.00 0.00 0.00 4.00
1145 3648 1.001406 CAACTCCAGTCCCTCTCACAC 59.999 57.143 0.00 0.00 0.00 3.82
1154 3657 0.531657 CCCTCTCACACAGCTCTCTG 59.468 60.000 0.00 0.00 45.71 3.35
1174 3677 1.301953 CTTTTGGCTTTGGCAGGGC 60.302 57.895 8.67 8.67 39.75 5.19
1203 3706 4.170062 CAAGACATGCTGCGGCCG 62.170 66.667 24.05 24.05 37.74 6.13
1251 3754 3.394836 GAGCAGTCCTTCCGCCCT 61.395 66.667 0.00 0.00 0.00 5.19
1305 3808 4.354155 CGCAAGGTCGAACCAGAA 57.646 55.556 0.00 0.00 41.95 3.02
1310 3813 0.841289 AAGGTCGAACCAGAACCCAA 59.159 50.000 0.00 0.00 41.95 4.12
1311 3814 1.064825 AGGTCGAACCAGAACCCAAT 58.935 50.000 0.00 0.00 41.95 3.16
1346 3854 1.972075 TGTCGTTTCCTGGTGTATCCA 59.028 47.619 0.00 0.00 45.01 3.41
1349 3857 2.569853 TCGTTTCCTGGTGTATCCATGT 59.430 45.455 0.00 0.00 46.12 3.21
1352 3860 2.153034 TCCTGGTGTATCCATGTCGA 57.847 50.000 0.00 0.00 46.12 4.20
1362 3870 4.832823 TGTATCCATGTCGATATCCAGTGT 59.167 41.667 0.00 0.00 0.00 3.55
1427 3939 1.282157 GGGTACAACTCAAGATGGGCT 59.718 52.381 0.00 0.00 0.00 5.19
1521 4033 7.565190 ATGGGATTATCACACTGATATCTGT 57.435 36.000 9.28 9.28 38.94 3.41
1523 4035 6.169094 GGGATTATCACACTGATATCTGTGG 58.831 44.000 33.13 24.96 46.06 4.17
1524 4036 6.239714 GGGATTATCACACTGATATCTGTGGT 60.240 42.308 33.13 24.00 46.06 4.16
1525 4037 7.039011 GGGATTATCACACTGATATCTGTGGTA 60.039 40.741 33.13 23.17 46.06 3.25
1526 4038 8.367911 GGATTATCACACTGATATCTGTGGTAA 58.632 37.037 33.13 27.89 44.28 2.85
1527 4039 9.416794 GATTATCACACTGATATCTGTGGTAAG 57.583 37.037 33.13 23.35 43.71 2.34
1528 4040 6.798427 ATCACACTGATATCTGTGGTAAGT 57.202 37.500 33.13 17.69 46.06 2.24
1529 4041 6.605471 TCACACTGATATCTGTGGTAAGTT 57.395 37.500 33.13 17.14 46.06 2.66
1533 4045 9.035607 CACACTGATATCTGTGGTAAGTTAATC 57.964 37.037 33.13 0.00 46.06 1.75
1608 4128 0.942962 GCTAATGATGCAGCGCTTCT 59.057 50.000 7.50 0.00 34.46 2.85
1621 4141 0.992802 CGCTTCTAGGACGAACAAGC 59.007 55.000 0.00 1.07 36.84 4.01
1643 4163 1.209127 CGGCAACATGTTCCGGTTC 59.791 57.895 27.64 9.11 39.52 3.62
1737 4258 9.702494 AATGTACCTAACTAGTTTGAACTGTAC 57.298 33.333 14.49 17.03 40.07 2.90
1738 4259 7.362662 TGTACCTAACTAGTTTGAACTGTACG 58.637 38.462 14.49 0.00 40.07 3.67
1776 4297 1.878953 TTGCTTTCGGAACTCTGACC 58.121 50.000 0.00 0.00 0.00 4.02
1814 4335 1.274728 AGCTGTAACTCTGCCTGTCTG 59.725 52.381 0.00 0.00 41.02 3.51
1815 4336 1.273606 GCTGTAACTCTGCCTGTCTGA 59.726 52.381 0.00 0.00 35.43 3.27
1835 4356 8.988060 TGTCTGAAGGTATATATCTGTGGAAAA 58.012 33.333 0.00 0.00 0.00 2.29
1864 4385 3.459598 TGGCTTGCTTAGGATCATAGGTT 59.540 43.478 0.00 0.00 0.00 3.50
1873 4394 2.703007 AGGATCATAGGTTGCTGGAGTC 59.297 50.000 0.00 0.00 0.00 3.36
1876 4397 4.345257 GGATCATAGGTTGCTGGAGTCTTA 59.655 45.833 0.00 0.00 0.00 2.10
1878 4399 5.344743 TCATAGGTTGCTGGAGTCTTAAG 57.655 43.478 0.00 0.00 0.00 1.85
1883 4404 3.494398 GGTTGCTGGAGTCTTAAGTGTGA 60.494 47.826 1.63 0.00 0.00 3.58
1890 4411 6.311690 GCTGGAGTCTTAAGTGTGATTTCTAC 59.688 42.308 1.63 0.00 0.00 2.59
1891 4412 6.698380 TGGAGTCTTAAGTGTGATTTCTACC 58.302 40.000 1.63 0.00 0.00 3.18
1892 4413 5.805994 GGAGTCTTAAGTGTGATTTCTACCG 59.194 44.000 1.63 0.00 0.00 4.02
1916 4437 6.510799 CGCAGGAAGATTAAGAAGCAGTATTG 60.511 42.308 0.00 0.00 0.00 1.90
2005 4526 8.968242 GTCATTTAACTCATTGGTTTCTTGAAC 58.032 33.333 0.00 0.00 37.53 3.18
2008 4529 4.574599 ACTCATTGGTTTCTTGAACTGC 57.425 40.909 0.00 0.00 38.35 4.40
2114 4641 6.585702 TCATACAGTTAAATGTGTTGCATTGC 59.414 34.615 18.30 0.46 46.29 3.56
2166 4693 8.218488 TCTAGTTGAAGTAGGTATATGCTGAGA 58.782 37.037 7.17 0.00 0.00 3.27
2182 4709 3.361724 GCTGAGATAAATTTACGTCGGCG 60.362 47.826 19.38 8.42 44.93 6.46
2219 4749 9.965902 ATAGTATTTCTTTAGGGGCAATATGAG 57.034 33.333 0.00 0.00 0.00 2.90
2317 4847 3.898123 TGCTTATCACTCCACCTCCTATC 59.102 47.826 0.00 0.00 0.00 2.08
2388 4918 4.818534 TGAACTGTTCATGTTTGCTCTC 57.181 40.909 18.69 0.00 34.08 3.20
2422 4952 3.760684 GACTGACTGGCATGGAAAGAAAT 59.239 43.478 0.00 0.00 0.00 2.17
2443 4973 1.457346 AATGAGAGCCAAGAAAGCCG 58.543 50.000 0.00 0.00 0.00 5.52
2459 4989 3.695830 AGCCGATACCTTTTCTGTCAA 57.304 42.857 0.00 0.00 0.00 3.18
2469 4999 9.606631 GATACCTTTTCTGTCAATTCTACTCAT 57.393 33.333 0.00 0.00 0.00 2.90
2486 5016 1.686052 TCATGCCCAGTTTGTGGTTTC 59.314 47.619 0.00 0.00 46.37 2.78
2490 5020 2.312390 GCCCAGTTTGTGGTTTCCTAA 58.688 47.619 0.00 0.00 46.37 2.69
2501 5031 4.055360 GTGGTTTCCTAACATTTGTTGCC 58.945 43.478 6.21 0.79 38.90 4.52
2533 5063 9.672086 TTTTATAATGTGCTGTTGAACAAGTAC 57.328 29.630 0.00 4.54 34.97 2.73
2534 5064 8.615878 TTATAATGTGCTGTTGAACAAGTACT 57.384 30.769 0.00 0.00 34.97 2.73
2535 5065 9.713713 TTATAATGTGCTGTTGAACAAGTACTA 57.286 29.630 0.00 0.00 34.97 1.82
2536 5066 6.935741 AATGTGCTGTTGAACAAGTACTAA 57.064 33.333 0.00 0.00 34.97 2.24
2537 5067 6.935741 ATGTGCTGTTGAACAAGTACTAAA 57.064 33.333 0.00 0.00 34.97 1.85
2538 5068 6.745159 TGTGCTGTTGAACAAGTACTAAAA 57.255 33.333 0.00 0.00 0.00 1.52
2539 5069 7.328277 TGTGCTGTTGAACAAGTACTAAAAT 57.672 32.000 0.00 0.00 0.00 1.82
2540 5070 8.439993 TGTGCTGTTGAACAAGTACTAAAATA 57.560 30.769 0.00 0.00 0.00 1.40
2541 5071 8.556194 TGTGCTGTTGAACAAGTACTAAAATAG 58.444 33.333 0.00 0.00 0.00 1.73
2542 5072 8.015658 GTGCTGTTGAACAAGTACTAAAATAGG 58.984 37.037 0.00 0.00 0.00 2.57
2543 5073 7.934665 TGCTGTTGAACAAGTACTAAAATAGGA 59.065 33.333 0.00 0.00 0.00 2.94
2544 5074 8.780249 GCTGTTGAACAAGTACTAAAATAGGAA 58.220 33.333 0.00 0.00 0.00 3.36
2552 5082 9.516546 ACAAGTACTAAAATAGGAAAAAGAGGG 57.483 33.333 0.00 0.00 0.00 4.30
2553 5083 9.516546 CAAGTACTAAAATAGGAAAAAGAGGGT 57.483 33.333 0.00 0.00 0.00 4.34
2566 5096 2.262423 AGAGGGTCAAACAAGCACTC 57.738 50.000 0.00 0.00 0.00 3.51
2568 5098 1.876156 GAGGGTCAAACAAGCACTCAG 59.124 52.381 0.00 0.00 0.00 3.35
2571 5101 3.327757 AGGGTCAAACAAGCACTCAGATA 59.672 43.478 0.00 0.00 0.00 1.98
2572 5102 4.072131 GGGTCAAACAAGCACTCAGATAA 58.928 43.478 0.00 0.00 0.00 1.75
2584 5114 2.290323 ACTCAGATAAGCAAAAGCGGGT 60.290 45.455 0.00 0.00 0.00 5.28
2593 5124 0.461961 CAAAAGCGGGTGGGAAAACA 59.538 50.000 0.00 0.00 0.00 2.83
2594 5125 1.134670 CAAAAGCGGGTGGGAAAACAA 60.135 47.619 0.00 0.00 0.00 2.83
2605 5136 6.017109 CGGGTGGGAAAACAAGATTATGATAG 60.017 42.308 0.00 0.00 0.00 2.08
2611 5142 9.525826 GGGAAAACAAGATTATGATAGATCCAT 57.474 33.333 0.00 0.00 0.00 3.41
2615 5146 7.024345 ACAAGATTATGATAGATCCATGGCA 57.976 36.000 6.96 0.00 0.00 4.92
2635 5171 3.490419 GCAATGGCAAGCCTTAATCTCTG 60.490 47.826 12.96 1.65 40.72 3.35
2637 5173 2.991250 TGGCAAGCCTTAATCTCTGTC 58.009 47.619 12.96 0.00 36.94 3.51
2639 5175 3.774766 TGGCAAGCCTTAATCTCTGTCTA 59.225 43.478 12.96 0.00 36.94 2.59
2642 5178 5.069251 GGCAAGCCTTAATCTCTGTCTAGTA 59.931 44.000 3.29 0.00 0.00 1.82
2643 5179 6.239458 GGCAAGCCTTAATCTCTGTCTAGTAT 60.239 42.308 3.29 0.00 0.00 2.12
2644 5180 7.213678 GCAAGCCTTAATCTCTGTCTAGTATT 58.786 38.462 0.00 0.00 0.00 1.89
2646 5182 9.606631 CAAGCCTTAATCTCTGTCTAGTATTTT 57.393 33.333 0.00 0.00 0.00 1.82
2648 5184 8.207545 AGCCTTAATCTCTGTCTAGTATTTTGG 58.792 37.037 0.00 0.00 0.00 3.28
2649 5185 8.204836 GCCTTAATCTCTGTCTAGTATTTTGGA 58.795 37.037 0.00 0.00 0.00 3.53
2650 5186 9.757227 CCTTAATCTCTGTCTAGTATTTTGGAG 57.243 37.037 0.00 0.00 0.00 3.86
2651 5187 9.255304 CTTAATCTCTGTCTAGTATTTTGGAGC 57.745 37.037 0.00 0.00 0.00 4.70
2652 5188 7.430760 AATCTCTGTCTAGTATTTTGGAGCT 57.569 36.000 0.00 0.00 0.00 4.09
2654 5190 7.336161 TCTCTGTCTAGTATTTTGGAGCTAC 57.664 40.000 0.00 0.00 0.00 3.58
2656 5192 8.272889 TCTCTGTCTAGTATTTTGGAGCTACTA 58.727 37.037 0.00 0.00 0.00 1.82
2657 5193 8.818622 TCTGTCTAGTATTTTGGAGCTACTAA 57.181 34.615 0.00 0.00 29.96 2.24
2689 5225 5.539955 AGTTCTTTATTGTGTGGGAATGCTT 59.460 36.000 0.00 0.00 0.00 3.91
2704 5240 7.014615 GTGGGAATGCTTGAGTTATGGAATATT 59.985 37.037 0.00 0.00 0.00 1.28
2705 5241 8.224025 TGGGAATGCTTGAGTTATGGAATATTA 58.776 33.333 0.00 0.00 0.00 0.98
2870 8028 0.972983 CGAGGAGGCTCCCTGAAAGA 60.973 60.000 29.62 0.00 37.19 2.52
3012 8170 6.920569 ACTTAAGGTAATTAATGCCTGTCG 57.079 37.500 7.53 6.55 44.37 4.35
3028 8186 4.679639 GCCTGTCGAAATTTTAATTCCCCC 60.680 45.833 0.00 0.00 0.00 5.40
3056 8214 9.301153 GTTGCCATTTTTAATAGAACGAATGAT 57.699 29.630 0.00 0.00 0.00 2.45
3070 8228 8.166422 AGAACGAATGATATGGTTTAATTCCC 57.834 34.615 0.00 0.00 0.00 3.97
3071 8229 6.894339 ACGAATGATATGGTTTAATTCCCC 57.106 37.500 0.00 0.00 0.00 4.81
3072 8230 5.773176 ACGAATGATATGGTTTAATTCCCCC 59.227 40.000 0.00 0.00 0.00 5.40
3073 8231 6.010219 CGAATGATATGGTTTAATTCCCCCT 58.990 40.000 0.00 0.00 0.00 4.79
3074 8232 6.071952 CGAATGATATGGTTTAATTCCCCCTG 60.072 42.308 0.00 0.00 0.00 4.45
3076 8234 6.098716 TGATATGGTTTAATTCCCCCTGTT 57.901 37.500 0.00 0.00 0.00 3.16
3077 8235 6.133356 TGATATGGTTTAATTCCCCCTGTTC 58.867 40.000 0.00 0.00 0.00 3.18
3078 8236 3.178412 TGGTTTAATTCCCCCTGTTCC 57.822 47.619 0.00 0.00 0.00 3.62
3079 8237 2.225420 TGGTTTAATTCCCCCTGTTCCC 60.225 50.000 0.00 0.00 0.00 3.97
3080 8238 2.225420 GGTTTAATTCCCCCTGTTCCCA 60.225 50.000 0.00 0.00 0.00 4.37
3081 8239 3.096852 GTTTAATTCCCCCTGTTCCCAG 58.903 50.000 0.00 0.00 38.50 4.45
3082 8240 2.068831 TAATTCCCCCTGTTCCCAGT 57.931 50.000 0.00 0.00 36.95 4.00
3083 8241 0.409484 AATTCCCCCTGTTCCCAGTG 59.591 55.000 0.00 0.00 36.95 3.66
3085 8243 1.715019 TTCCCCCTGTTCCCAGTGTG 61.715 60.000 0.00 0.00 36.95 3.82
3088 8275 0.823356 CCCCTGTTCCCAGTGTGTTG 60.823 60.000 0.00 0.00 36.95 3.33
3103 8290 6.441274 CAGTGTGTTGATCAGTAGCATTTTT 58.559 36.000 0.00 0.00 0.00 1.94
3172 8359 7.280205 ACTTGAAACTTTTAGACAACGTCATCT 59.720 33.333 6.74 6.74 34.60 2.90
3173 8360 6.943981 TGAAACTTTTAGACAACGTCATCTG 58.056 36.000 10.90 0.00 34.60 2.90
3196 8383 5.137403 GCTTTGGTATATCGTGCATTTACG 58.863 41.667 0.00 0.00 44.98 3.18
3243 8430 9.807649 GGTGCATTAATCATCTTTTGATACTTT 57.192 29.630 0.00 0.00 44.51 2.66
3254 8441 4.864704 TTTGATACTTTGGAAACCAGGC 57.135 40.909 0.00 0.00 33.81 4.85
3257 8444 3.826157 TGATACTTTGGAAACCAGGCAAG 59.174 43.478 0.00 0.00 33.81 4.01
3263 8450 1.039856 GGAAACCAGGCAAGCTTCAA 58.960 50.000 0.00 0.00 0.00 2.69
3278 8465 6.257630 GCAAGCTTCAACAATAACTTTTTCCA 59.742 34.615 0.00 0.00 0.00 3.53
3297 8486 4.065088 TCCAAGAAAGTTGTCGAATCAGG 58.935 43.478 0.00 0.00 0.00 3.86
3309 8498 1.202154 CGAATCAGGCTAGTCGTTCGT 60.202 52.381 18.15 0.00 35.18 3.85
3320 8513 0.938168 GTCGTTCGTGACCACCTCAC 60.938 60.000 0.00 0.00 45.38 3.51
3529 8722 4.194640 GTCTGAAAGCTGAAGATATGCCA 58.805 43.478 0.00 0.00 0.00 4.92
3566 8759 4.093011 TCATTCCAAAATCGATGGGGTTT 58.907 39.130 0.00 0.00 38.54 3.27
3614 8807 2.030805 GGTTTCAGGCAGTGTGATGTTC 60.031 50.000 0.00 0.00 0.00 3.18
3636 8829 0.238553 GTTCTGAACCGCTTGCTTCC 59.761 55.000 9.38 0.00 0.00 3.46
3638 8831 0.320771 TCTGAACCGCTTGCTTCCTC 60.321 55.000 0.00 0.00 0.00 3.71
3639 8832 1.630244 CTGAACCGCTTGCTTCCTCG 61.630 60.000 0.00 0.00 0.00 4.63
3640 8833 1.668151 GAACCGCTTGCTTCCTCGT 60.668 57.895 0.00 0.00 0.00 4.18
3641 8834 1.227853 AACCGCTTGCTTCCTCGTT 60.228 52.632 0.00 0.00 0.00 3.85
3642 8835 1.228657 AACCGCTTGCTTCCTCGTTC 61.229 55.000 0.00 0.00 0.00 3.95
3643 8836 1.374758 CCGCTTGCTTCCTCGTTCT 60.375 57.895 0.00 0.00 0.00 3.01
3648 8841 3.045688 GCTTGCTTCCTCGTTCTTTTTG 58.954 45.455 0.00 0.00 0.00 2.44
3652 8845 3.130340 TGCTTCCTCGTTCTTTTTGCTTT 59.870 39.130 0.00 0.00 0.00 3.51
3653 8846 4.112634 GCTTCCTCGTTCTTTTTGCTTTT 58.887 39.130 0.00 0.00 0.00 2.27
3658 8851 4.504097 CCTCGTTCTTTTTGCTTTTCCTTG 59.496 41.667 0.00 0.00 0.00 3.61
3724 8917 6.866347 GTGAAATTTCACGTCCATTTTTCAG 58.134 36.000 29.94 0.00 46.80 3.02
3728 8921 0.958091 CACGTCCATTTTTCAGCCCA 59.042 50.000 0.00 0.00 0.00 5.36
3736 8929 6.405538 GTCCATTTTTCAGCCCATTGAAATA 58.594 36.000 2.43 0.00 44.12 1.40
3748 8941 3.368323 CCATTGAAATAGTTGGGTGTGCC 60.368 47.826 0.00 0.00 0.00 5.01
3749 8942 2.666272 TGAAATAGTTGGGTGTGCCA 57.334 45.000 0.00 0.00 36.17 4.92
3750 8943 3.168035 TGAAATAGTTGGGTGTGCCAT 57.832 42.857 0.00 0.00 36.17 4.40
3752 8945 4.269183 TGAAATAGTTGGGTGTGCCATAG 58.731 43.478 0.00 0.00 36.17 2.23
3753 8946 4.018870 TGAAATAGTTGGGTGTGCCATAGA 60.019 41.667 0.00 0.00 36.17 1.98
3754 8947 4.584638 AATAGTTGGGTGTGCCATAGAA 57.415 40.909 0.00 0.00 36.17 2.10
3755 8948 2.969821 AGTTGGGTGTGCCATAGAAA 57.030 45.000 0.00 0.00 36.17 2.52
3756 8949 3.237268 AGTTGGGTGTGCCATAGAAAA 57.763 42.857 0.00 0.00 36.17 2.29
3757 8950 3.571590 AGTTGGGTGTGCCATAGAAAAA 58.428 40.909 0.00 0.00 36.17 1.94
3758 8951 4.159557 AGTTGGGTGTGCCATAGAAAAAT 58.840 39.130 0.00 0.00 36.17 1.82
3761 8954 5.652994 TGGGTGTGCCATAGAAAAATTAC 57.347 39.130 0.00 0.00 36.17 1.89
3771 8974 9.679661 TGCCATAGAAAAATTACAAGTAGATGA 57.320 29.630 0.00 0.00 0.00 2.92
3784 8987 7.076842 ACAAGTAGATGACATGATTTTTCGG 57.923 36.000 0.00 0.00 31.07 4.30
3802 9005 1.760192 GGTGGATTGCTGCTCAGATT 58.240 50.000 0.00 0.00 0.00 2.40
3803 9006 1.404391 GGTGGATTGCTGCTCAGATTG 59.596 52.381 0.00 0.00 0.00 2.67
3806 9009 2.026542 TGGATTGCTGCTCAGATTGTCT 60.027 45.455 0.00 0.00 0.00 3.41
3846 9054 3.149196 CAAGGAACACAGTGGCTAATGT 58.851 45.455 5.31 0.00 35.10 2.71
3849 9057 3.569701 AGGAACACAGTGGCTAATGTTTG 59.430 43.478 0.00 0.00 35.47 2.93
3857 9065 3.947834 AGTGGCTAATGTTTGATAGTGCC 59.052 43.478 0.00 0.00 39.53 5.01
3860 9068 2.599848 GCTAATGTTTGATAGTGCCGCG 60.600 50.000 0.00 0.00 0.00 6.46
3877 9085 1.001268 CGCGACATAGAGTACCTGCAT 60.001 52.381 0.00 0.00 0.00 3.96
3879 9087 3.304458 CGCGACATAGAGTACCTGCATTA 60.304 47.826 0.00 0.00 0.00 1.90
3892 9100 7.260603 AGTACCTGCATTAGAAATTGCATTTC 58.739 34.615 11.41 11.41 46.87 2.17
3903 9111 6.004408 GAAATTGCATTTCTTTGGTGCATT 57.996 33.333 11.86 0.00 46.90 3.56
3909 9117 5.236911 TGCATTTCTTTGGTGCATTTCTTTC 59.763 36.000 0.00 0.00 43.30 2.62
3912 9120 5.452078 TTCTTTGGTGCATTTCTTTCGAT 57.548 34.783 0.00 0.00 0.00 3.59
3913 9121 5.452078 TCTTTGGTGCATTTCTTTCGATT 57.548 34.783 0.00 0.00 0.00 3.34
3914 9122 5.221880 TCTTTGGTGCATTTCTTTCGATTG 58.778 37.500 0.00 0.00 0.00 2.67
3915 9123 4.582701 TTGGTGCATTTCTTTCGATTGT 57.417 36.364 0.00 0.00 0.00 2.71
3916 9124 4.159377 TGGTGCATTTCTTTCGATTGTC 57.841 40.909 0.00 0.00 0.00 3.18
3917 9125 3.567585 TGGTGCATTTCTTTCGATTGTCA 59.432 39.130 0.00 0.00 0.00 3.58
3918 9126 4.037327 TGGTGCATTTCTTTCGATTGTCAA 59.963 37.500 0.00 0.00 0.00 3.18
3919 9127 4.981674 GGTGCATTTCTTTCGATTGTCAAA 59.018 37.500 0.00 0.00 0.00 2.69
3920 9128 5.461737 GGTGCATTTCTTTCGATTGTCAAAA 59.538 36.000 0.00 0.00 0.00 2.44
3922 9130 5.175491 TGCATTTCTTTCGATTGTCAAAAGC 59.825 36.000 0.00 0.00 31.55 3.51
3924 9132 6.582295 GCATTTCTTTCGATTGTCAAAAGCTA 59.418 34.615 0.00 0.00 31.55 3.32
3925 9133 7.114811 GCATTTCTTTCGATTGTCAAAAGCTAA 59.885 33.333 0.00 0.00 31.55 3.09
3926 9134 7.908193 TTTCTTTCGATTGTCAAAAGCTAAC 57.092 32.000 0.00 0.00 31.55 2.34
3927 9135 6.612247 TCTTTCGATTGTCAAAAGCTAACA 57.388 33.333 0.00 0.00 31.55 2.41
3928 9136 7.022055 TCTTTCGATTGTCAAAAGCTAACAA 57.978 32.000 6.41 6.41 37.32 2.83
3929 9137 7.476667 TCTTTCGATTGTCAAAAGCTAACAAA 58.523 30.769 7.65 0.00 36.57 2.83
3931 9139 5.516090 TCGATTGTCAAAAGCTAACAAACC 58.484 37.500 7.65 3.84 36.57 3.27
3932 9140 4.679654 CGATTGTCAAAAGCTAACAAACCC 59.320 41.667 7.65 2.09 36.57 4.11
3933 9141 4.394439 TTGTCAAAAGCTAACAAACCCC 57.606 40.909 0.00 0.00 30.39 4.95
3934 9142 3.637769 TGTCAAAAGCTAACAAACCCCT 58.362 40.909 0.00 0.00 0.00 4.79
3935 9143 4.027437 TGTCAAAAGCTAACAAACCCCTT 58.973 39.130 0.00 0.00 0.00 3.95
3936 9144 4.098807 TGTCAAAAGCTAACAAACCCCTTC 59.901 41.667 0.00 0.00 0.00 3.46
3937 9145 3.639561 TCAAAAGCTAACAAACCCCTTCC 59.360 43.478 0.00 0.00 0.00 3.46
3938 9146 2.304221 AAGCTAACAAACCCCTTCCC 57.696 50.000 0.00 0.00 0.00 3.97
3939 9147 0.408309 AGCTAACAAACCCCTTCCCC 59.592 55.000 0.00 0.00 0.00 4.81
3940 9148 0.408309 GCTAACAAACCCCTTCCCCT 59.592 55.000 0.00 0.00 0.00 4.79
3941 9149 1.203137 GCTAACAAACCCCTTCCCCTT 60.203 52.381 0.00 0.00 0.00 3.95
3942 9150 2.525368 CTAACAAACCCCTTCCCCTTG 58.475 52.381 0.00 0.00 0.00 3.61
3943 9151 0.938192 AACAAACCCCTTCCCCTTGA 59.062 50.000 0.00 0.00 0.00 3.02
3944 9152 0.938192 ACAAACCCCTTCCCCTTGAA 59.062 50.000 0.00 0.00 0.00 2.69
3956 9164 4.935352 TCCCCTTGAAGATTGTGTTTTG 57.065 40.909 0.00 0.00 0.00 2.44
3957 9165 3.640967 TCCCCTTGAAGATTGTGTTTTGG 59.359 43.478 0.00 0.00 0.00 3.28
3958 9166 3.640967 CCCCTTGAAGATTGTGTTTTGGA 59.359 43.478 0.00 0.00 0.00 3.53
3959 9167 4.284234 CCCCTTGAAGATTGTGTTTTGGAT 59.716 41.667 0.00 0.00 0.00 3.41
3960 9168 5.480073 CCCCTTGAAGATTGTGTTTTGGATA 59.520 40.000 0.00 0.00 0.00 2.59
3961 9169 6.389906 CCCTTGAAGATTGTGTTTTGGATAC 58.610 40.000 0.00 0.00 0.00 2.24
3962 9170 6.389906 CCTTGAAGATTGTGTTTTGGATACC 58.610 40.000 0.00 0.00 0.00 2.73
3963 9171 6.209391 CCTTGAAGATTGTGTTTTGGATACCT 59.791 38.462 0.00 0.00 0.00 3.08
3964 9172 6.573664 TGAAGATTGTGTTTTGGATACCTG 57.426 37.500 0.00 0.00 0.00 4.00
3965 9173 5.476599 TGAAGATTGTGTTTTGGATACCTGG 59.523 40.000 0.00 0.00 0.00 4.45
3966 9174 4.344104 AGATTGTGTTTTGGATACCTGGG 58.656 43.478 0.00 0.00 0.00 4.45
3967 9175 2.595750 TGTGTTTTGGATACCTGGGG 57.404 50.000 0.00 0.00 0.00 4.96
3968 9176 2.066592 TGTGTTTTGGATACCTGGGGA 58.933 47.619 0.00 0.00 0.00 4.81
3969 9177 2.224917 TGTGTTTTGGATACCTGGGGAC 60.225 50.000 0.00 0.00 0.00 4.46
3970 9178 2.066592 TGTTTTGGATACCTGGGGACA 58.933 47.619 0.00 0.00 39.59 4.02
3971 9179 2.447429 TGTTTTGGATACCTGGGGACAA 59.553 45.455 0.00 0.00 42.06 3.18
3972 9180 3.117093 TGTTTTGGATACCTGGGGACAAA 60.117 43.478 0.00 1.52 42.06 2.83
3973 9181 4.093743 GTTTTGGATACCTGGGGACAAAT 58.906 43.478 0.00 0.00 42.06 2.32
3974 9182 3.380471 TTGGATACCTGGGGACAAATG 57.620 47.619 0.00 0.00 42.06 2.32
3975 9183 1.568597 TGGATACCTGGGGACAAATGG 59.431 52.381 0.00 0.00 42.06 3.16
3976 9184 1.692411 GATACCTGGGGACAAATGGC 58.308 55.000 0.00 0.00 42.06 4.40
3977 9185 0.261696 ATACCTGGGGACAAATGGCC 59.738 55.000 0.00 0.00 44.61 5.36
3978 9186 2.204865 TACCTGGGGACAAATGGCCG 62.205 60.000 0.00 0.00 47.00 6.13
3979 9187 2.755469 CTGGGGACAAATGGCCGG 60.755 66.667 0.00 0.00 47.00 6.13
3981 9189 4.759205 GGGGACAAATGGCCGGCT 62.759 66.667 28.56 4.40 47.00 5.52
3982 9190 2.679996 GGGACAAATGGCCGGCTT 60.680 61.111 28.56 11.36 47.00 4.35
3983 9191 2.573340 GGACAAATGGCCGGCTTG 59.427 61.111 28.56 24.51 30.66 4.01
3984 9192 2.275380 GGACAAATGGCCGGCTTGT 61.275 57.895 27.02 27.02 36.02 3.16
3985 9193 1.212751 GACAAATGGCCGGCTTGTC 59.787 57.895 31.82 31.82 41.40 3.18
3986 9194 1.523154 GACAAATGGCCGGCTTGTCA 61.523 55.000 36.32 24.79 45.34 3.58
3987 9195 0.899717 ACAAATGGCCGGCTTGTCAT 60.900 50.000 28.56 18.27 0.00 3.06
3988 9196 0.179129 CAAATGGCCGGCTTGTCATC 60.179 55.000 28.56 8.18 0.00 2.92
3989 9197 0.323725 AAATGGCCGGCTTGTCATCT 60.324 50.000 28.56 4.70 0.00 2.90
3990 9198 0.749454 AATGGCCGGCTTGTCATCTC 60.749 55.000 28.56 6.48 0.00 2.75
3991 9199 2.514824 GGCCGGCTTGTCATCTCC 60.515 66.667 28.56 0.41 0.00 3.71
3992 9200 2.268920 GCCGGCTTGTCATCTCCA 59.731 61.111 22.15 0.00 0.00 3.86
3993 9201 2.109126 GCCGGCTTGTCATCTCCAC 61.109 63.158 22.15 0.00 0.00 4.02
3994 9202 1.296392 CCGGCTTGTCATCTCCACA 59.704 57.895 0.00 0.00 0.00 4.17
3995 9203 1.021390 CCGGCTTGTCATCTCCACAC 61.021 60.000 0.00 0.00 0.00 3.82
3996 9204 1.021390 CGGCTTGTCATCTCCACACC 61.021 60.000 0.00 0.00 0.00 4.16
3997 9205 0.326264 GGCTTGTCATCTCCACACCT 59.674 55.000 0.00 0.00 0.00 4.00
3998 9206 1.446907 GCTTGTCATCTCCACACCTG 58.553 55.000 0.00 0.00 0.00 4.00
3999 9207 1.947678 GCTTGTCATCTCCACACCTGG 60.948 57.143 0.00 0.00 39.23 4.45
4000 9208 0.692476 TTGTCATCTCCACACCTGGG 59.308 55.000 0.00 0.00 38.25 4.45
4001 9209 0.178906 TGTCATCTCCACACCTGGGA 60.179 55.000 0.00 0.00 38.25 4.37
4002 9210 0.984230 GTCATCTCCACACCTGGGAA 59.016 55.000 0.00 0.00 38.25 3.97
4003 9211 1.561542 GTCATCTCCACACCTGGGAAT 59.438 52.381 0.00 0.00 38.25 3.01
4004 9212 2.771943 GTCATCTCCACACCTGGGAATA 59.228 50.000 0.00 0.00 38.25 1.75
4005 9213 3.041211 TCATCTCCACACCTGGGAATAG 58.959 50.000 0.00 0.00 38.25 1.73
4006 9214 2.940514 TCTCCACACCTGGGAATAGA 57.059 50.000 0.00 0.00 38.25 1.98
4007 9215 3.199442 TCTCCACACCTGGGAATAGAA 57.801 47.619 0.00 0.00 38.25 2.10
4008 9216 2.838202 TCTCCACACCTGGGAATAGAAC 59.162 50.000 0.00 0.00 38.25 3.01
4009 9217 2.840651 CTCCACACCTGGGAATAGAACT 59.159 50.000 0.00 0.00 38.25 3.01
4010 9218 3.256704 TCCACACCTGGGAATAGAACTT 58.743 45.455 0.00 0.00 38.25 2.66
4011 9219 4.431378 TCCACACCTGGGAATAGAACTTA 58.569 43.478 0.00 0.00 38.25 2.24
4012 9220 4.224370 TCCACACCTGGGAATAGAACTTAC 59.776 45.833 0.00 0.00 38.25 2.34
4013 9221 4.019681 CCACACCTGGGAATAGAACTTACA 60.020 45.833 0.00 0.00 33.23 2.41
4014 9222 5.339200 CCACACCTGGGAATAGAACTTACAT 60.339 44.000 0.00 0.00 33.23 2.29
4015 9223 6.180472 CACACCTGGGAATAGAACTTACATT 58.820 40.000 0.00 0.00 0.00 2.71
4016 9224 6.316390 CACACCTGGGAATAGAACTTACATTC 59.684 42.308 0.00 0.00 0.00 2.67
4017 9225 6.215636 ACACCTGGGAATAGAACTTACATTCT 59.784 38.462 0.00 0.00 41.81 2.40
4018 9226 7.112779 CACCTGGGAATAGAACTTACATTCTT 58.887 38.462 0.00 0.00 39.65 2.52
4019 9227 7.066284 CACCTGGGAATAGAACTTACATTCTTG 59.934 40.741 0.00 0.00 39.65 3.02
4020 9228 7.112779 CCTGGGAATAGAACTTACATTCTTGT 58.887 38.462 0.00 0.00 39.65 3.16
4021 9229 7.066284 CCTGGGAATAGAACTTACATTCTTGTG 59.934 40.741 0.00 0.00 39.65 3.33
4022 9230 7.458397 TGGGAATAGAACTTACATTCTTGTGT 58.542 34.615 0.00 0.00 39.65 3.72
4023 9231 7.390440 TGGGAATAGAACTTACATTCTTGTGTG 59.610 37.037 0.00 0.00 39.65 3.82
4024 9232 7.148239 GGGAATAGAACTTACATTCTTGTGTGG 60.148 40.741 0.00 0.00 39.65 4.17
4025 9233 7.390718 GGAATAGAACTTACATTCTTGTGTGGT 59.609 37.037 0.00 0.00 39.65 4.16
4026 9234 8.691661 AATAGAACTTACATTCTTGTGTGGTT 57.308 30.769 0.00 0.00 39.65 3.67
4027 9235 8.691661 ATAGAACTTACATTCTTGTGTGGTTT 57.308 30.769 0.00 0.00 39.65 3.27
4028 9236 7.404671 AGAACTTACATTCTTGTGTGGTTTT 57.595 32.000 0.00 0.00 35.29 2.43
4029 9237 7.480810 AGAACTTACATTCTTGTGTGGTTTTC 58.519 34.615 0.00 0.00 35.29 2.29
4046 9254 6.308041 GTGGTTTTCTTTCTTGTGAAGAACAC 59.692 38.462 7.13 7.13 46.53 3.32
4061 9269 5.104941 TGAAGAACACAAGAGAACCTGAAGA 60.105 40.000 0.00 0.00 0.00 2.87
4077 9285 6.769512 ACCTGAAGAGTATTTGCTTTAGACA 58.230 36.000 0.00 0.00 31.55 3.41
4099 9307 4.970472 TTTTTGTCATCTTTGATTGCGC 57.030 36.364 0.00 0.00 33.56 6.09
4121 9329 5.058008 CGCGAACATGATTGTTTGTTTACTC 59.942 40.000 0.00 0.00 46.01 2.59
4122 9330 5.342259 GCGAACATGATTGTTTGTTTACTCC 59.658 40.000 0.00 0.00 46.01 3.85
4123 9331 5.856455 CGAACATGATTGTTTGTTTACTCCC 59.144 40.000 0.00 0.00 46.01 4.30
4124 9332 6.514212 CGAACATGATTGTTTGTTTACTCCCA 60.514 38.462 0.00 0.00 46.01 4.37
4164 9373 4.699735 CACACTGGAATATGTGCCTTGTTA 59.300 41.667 0.00 0.00 39.79 2.41
4335 9546 1.590238 CATGGTTCTTCGAGACGCATC 59.410 52.381 0.00 0.00 0.00 3.91
4336 9547 0.888619 TGGTTCTTCGAGACGCATCT 59.111 50.000 0.00 0.00 38.15 2.90
4367 9578 3.326646 ATGCTCGCTGCTGAGGCTT 62.327 57.895 18.25 9.39 43.37 4.35
4389 9601 3.198635 TGGCCATTTTGTCAAAGGTTTGA 59.801 39.130 0.00 0.87 44.31 2.69
4408 9620 6.214412 GGTTTGATACTCCCTCTGATCCATAT 59.786 42.308 0.00 0.00 0.00 1.78
4415 9627 6.479884 ACTCCCTCTGATCCATATTAATTGC 58.520 40.000 0.00 0.00 0.00 3.56
4416 9628 6.044754 ACTCCCTCTGATCCATATTAATTGCA 59.955 38.462 0.00 0.00 0.00 4.08
4419 9631 5.708697 CCTCTGATCCATATTAATTGCAGCA 59.291 40.000 0.00 0.00 0.00 4.41
4435 9672 8.597662 AATTGCAGCAACAATTAATATGGATC 57.402 30.769 10.85 0.00 45.92 3.36
4500 9738 1.140052 TGCCGAAGAGTTGGTGAAGAA 59.860 47.619 0.00 0.00 0.00 2.52
4506 9744 6.395629 CCGAAGAGTTGGTGAAGAAGTATTA 58.604 40.000 0.00 0.00 0.00 0.98
4507 9745 7.042335 CCGAAGAGTTGGTGAAGAAGTATTAT 58.958 38.462 0.00 0.00 0.00 1.28
4508 9746 7.549488 CCGAAGAGTTGGTGAAGAAGTATTATT 59.451 37.037 0.00 0.00 28.50 1.40
4525 9763 8.697507 AGTATTATTCCAGATAAAAAGGGCAG 57.302 34.615 0.00 0.00 0.00 4.85
4528 9766 8.608185 ATTATTCCAGATAAAAAGGGCAGAAA 57.392 30.769 0.00 0.00 0.00 2.52
4530 9768 6.933514 TTCCAGATAAAAAGGGCAGAAAAT 57.066 33.333 0.00 0.00 0.00 1.82
4533 9771 9.707957 TTCCAGATAAAAAGGGCAGAAAATATA 57.292 29.630 0.00 0.00 0.00 0.86
4539 9777 6.731292 AAAAGGGCAGAAAATATACATCCC 57.269 37.500 0.00 0.00 0.00 3.85
4541 9779 5.669798 AGGGCAGAAAATATACATCCCTT 57.330 39.130 0.00 0.00 39.69 3.95
4543 9781 6.071320 AGGGCAGAAAATATACATCCCTTTC 58.929 40.000 0.00 0.00 39.69 2.62
4544 9782 5.048713 GGGCAGAAAATATACATCCCTTTCG 60.049 44.000 0.00 0.00 32.50 3.46
4545 9783 5.048713 GGCAGAAAATATACATCCCTTTCGG 60.049 44.000 0.00 0.00 32.50 4.30
4556 9796 1.907739 CCTTTCGGGGAGATCTGCA 59.092 57.895 16.72 0.00 0.00 4.41
4584 9824 1.880340 CGACGAATGAGGCTGAGGC 60.880 63.158 0.00 0.00 37.82 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 2.696707 ACTCCCTCCGTTCGCAAATATA 59.303 45.455 0.00 0.00 0.00 0.86
160 164 3.187227 CGCTAGCTGTGCCAATATAAAGG 59.813 47.826 13.93 0.00 0.00 3.11
161 165 4.058124 TCGCTAGCTGTGCCAATATAAAG 58.942 43.478 13.93 0.00 0.00 1.85
162 166 3.807622 GTCGCTAGCTGTGCCAATATAAA 59.192 43.478 13.93 0.00 0.00 1.40
163 167 3.069586 AGTCGCTAGCTGTGCCAATATAA 59.930 43.478 13.93 0.00 0.00 0.98
167 171 0.742281 CAGTCGCTAGCTGTGCCAAT 60.742 55.000 13.93 0.00 0.00 3.16
174 178 2.730069 CTGAGATTCAGTCGCTAGCTG 58.270 52.381 13.93 4.51 39.58 4.24
389 2874 2.501723 GAGCAAACTAGATCAGGGGACA 59.498 50.000 0.00 0.00 0.00 4.02
390 2875 2.769095 AGAGCAAACTAGATCAGGGGAC 59.231 50.000 0.00 0.00 0.00 4.46
412 2897 2.034179 TGACGCCTAGATTCATACACGG 59.966 50.000 0.00 0.00 0.00 4.94
457 2942 3.376935 CTCCTACTGCCTGGCACGG 62.377 68.421 19.30 17.70 33.79 4.94
458 2943 2.185350 CTCCTACTGCCTGGCACG 59.815 66.667 19.30 16.09 33.79 5.34
459 2944 2.124942 GCTCCTACTGCCTGGCAC 60.125 66.667 19.30 1.85 33.79 5.01
460 2945 3.402681 GGCTCCTACTGCCTGGCA 61.403 66.667 21.96 21.96 46.38 4.92
466 2951 0.762461 AGATCTGGGGCTCCTACTGC 60.762 60.000 3.07 0.00 0.00 4.40
558 3054 4.164221 GGAGAATCTTGGTCAGGTCCATTA 59.836 45.833 0.00 0.00 37.33 1.90
566 3062 4.405358 AGCTAGAAGGAGAATCTTGGTCAG 59.595 45.833 0.00 0.00 33.73 3.51
567 3063 4.161189 CAGCTAGAAGGAGAATCTTGGTCA 59.839 45.833 0.00 0.00 30.05 4.02
627 3123 3.323751 AATCATTTTGGAGTTGCAGGC 57.676 42.857 0.00 0.00 0.00 4.85
708 3204 7.153985 TGCATAAAAGAACAAAGGAATCCAAG 58.846 34.615 0.61 0.00 0.00 3.61
712 3208 7.116805 CAGGTTGCATAAAAGAACAAAGGAATC 59.883 37.037 0.00 0.00 0.00 2.52
721 3217 5.888412 CAACACAGGTTGCATAAAAGAAC 57.112 39.130 0.00 0.00 46.98 3.01
760 3258 7.826744 TGACCAATTAAAGCAGATGTGTATGTA 59.173 33.333 0.00 0.00 0.00 2.29
761 3259 6.658816 TGACCAATTAAAGCAGATGTGTATGT 59.341 34.615 0.00 0.00 0.00 2.29
762 3260 7.087409 TGACCAATTAAAGCAGATGTGTATG 57.913 36.000 0.00 0.00 0.00 2.39
763 3261 6.183360 GCTGACCAATTAAAGCAGATGTGTAT 60.183 38.462 0.00 0.00 35.69 2.29
773 3271 0.179137 GCCGGCTGACCAATTAAAGC 60.179 55.000 22.15 0.00 34.57 3.51
804 3302 1.743623 TCCAAATGCGGGCGTACAG 60.744 57.895 0.00 0.00 0.00 2.74
814 3312 0.593128 ACACAAGAGCGTCCAAATGC 59.407 50.000 0.00 0.00 37.71 3.56
820 3318 0.716108 CATTCGACACAAGAGCGTCC 59.284 55.000 0.00 0.00 0.00 4.79
822 3320 2.148916 TTCATTCGACACAAGAGCGT 57.851 45.000 0.00 0.00 0.00 5.07
862 3360 7.801716 TGTAATCAGCAGACAGTTTTAAAGT 57.198 32.000 0.00 0.00 0.00 2.66
906 3404 5.039333 GCAAGAGTTAAAATGGCAGCTATG 58.961 41.667 0.00 0.00 0.00 2.23
951 3450 3.327172 GGAGTATCTAGGGCCCCTAAAAC 59.673 52.174 21.43 12.30 35.49 2.43
983 3483 1.261480 CATCGAGGCTAGGCACCTAT 58.739 55.000 19.70 4.84 37.77 2.57
1011 3511 2.764128 GTCGAGGGGCAGGATCCA 60.764 66.667 15.82 0.00 0.00 3.41
1038 3541 4.554036 GGAGGATGGCCGGCTGAC 62.554 72.222 28.56 16.80 39.96 3.51
1050 3553 3.157252 GCGAGGCAGATGGGAGGA 61.157 66.667 0.00 0.00 0.00 3.71
1071 3574 1.737355 GCAGCAAACCACCTGAAGCA 61.737 55.000 0.00 0.00 0.00 3.91
1111 3614 4.980805 GTTGGCGGGAGTGTGCGA 62.981 66.667 0.00 0.00 0.00 5.10
1145 3648 2.181954 AGCCAAAAGTCAGAGAGCTG 57.818 50.000 0.00 0.00 43.67 4.24
1154 3657 0.033920 CCCTGCCAAAGCCAAAAGTC 59.966 55.000 0.00 0.00 38.69 3.01
1174 3677 2.032860 ATGTCTTGGGATCCCGCTCG 62.033 60.000 26.03 13.43 39.42 5.03
1203 3706 2.811317 CCGAAGAGCACCAGACGC 60.811 66.667 0.00 0.00 0.00 5.19
1272 3775 2.198287 GCGGGAGTAGGTATCGGCA 61.198 63.158 0.00 0.00 0.00 5.69
1278 3781 1.033746 CGACCTTGCGGGAGTAGGTA 61.034 60.000 2.42 0.00 43.69 3.08
1372 3880 5.432645 TGACAACAATATCGGCCTGATAAA 58.567 37.500 17.34 2.92 42.69 1.40
1374 3882 4.343814 TCTGACAACAATATCGGCCTGATA 59.656 41.667 16.23 16.23 43.54 2.15
1375 3883 3.134623 TCTGACAACAATATCGGCCTGAT 59.865 43.478 13.38 13.38 41.30 2.90
1386 3898 3.614092 CACCATAGCCTCTGACAACAAT 58.386 45.455 0.00 0.00 0.00 2.71
1427 3939 1.219124 GCGCTGGATCAGGAACAGA 59.781 57.895 0.00 0.00 34.21 3.41
1516 4028 8.211629 GGGAGTATTGATTAACTTACCACAGAT 58.788 37.037 0.00 0.00 0.00 2.90
1518 4030 7.565680 AGGGAGTATTGATTAACTTACCACAG 58.434 38.462 0.00 0.00 0.00 3.66
1521 4033 8.154856 GCATAGGGAGTATTGATTAACTTACCA 58.845 37.037 0.00 0.00 0.00 3.25
1523 4035 9.209175 CTGCATAGGGAGTATTGATTAACTTAC 57.791 37.037 0.00 0.00 0.00 2.34
1524 4036 8.375506 CCTGCATAGGGAGTATTGATTAACTTA 58.624 37.037 0.00 0.00 40.63 2.24
1525 4037 7.227156 CCTGCATAGGGAGTATTGATTAACTT 58.773 38.462 0.00 0.00 40.63 2.66
1526 4038 6.773638 CCTGCATAGGGAGTATTGATTAACT 58.226 40.000 0.00 0.00 40.63 2.24
1608 4128 1.080093 CGCTGGCTTGTTCGTCCTA 60.080 57.895 0.00 0.00 0.00 2.94
1621 4141 2.568090 GGAACATGTTGCCGCTGG 59.432 61.111 17.58 0.00 0.00 4.85
1643 4163 9.219603 TGTTTTGAGATTCTGTTTATACTCCTG 57.780 33.333 0.00 0.00 0.00 3.86
1681 4201 2.680841 TCGTTTCAAACACACCTTCAGG 59.319 45.455 0.22 0.00 42.17 3.86
1716 4237 6.639632 TCGTACAGTTCAAACTAGTTAGGT 57.360 37.500 8.92 4.12 37.08 3.08
1719 4240 6.925165 CCCTTTCGTACAGTTCAAACTAGTTA 59.075 38.462 8.92 0.00 37.08 2.24
1732 4253 2.474410 AGCTTTCCCCTTTCGTACAG 57.526 50.000 0.00 0.00 0.00 2.74
1737 4258 5.067805 AGCAAATATAAGCTTTCCCCTTTCG 59.932 40.000 3.20 0.00 38.01 3.46
1738 4259 6.471233 AGCAAATATAAGCTTTCCCCTTTC 57.529 37.500 3.20 0.00 38.01 2.62
1764 4285 0.318441 TGCTTCAGGTCAGAGTTCCG 59.682 55.000 0.00 0.00 0.00 4.30
1814 4335 8.429641 TCCACTTTTCCACAGATATATACCTTC 58.570 37.037 0.00 0.00 0.00 3.46
1815 4336 8.331931 TCCACTTTTCCACAGATATATACCTT 57.668 34.615 0.00 0.00 0.00 3.50
1835 4356 1.635487 TCCTAAGCAAGCCAATCCACT 59.365 47.619 0.00 0.00 0.00 4.00
1864 4385 4.623932 AATCACACTTAAGACTCCAGCA 57.376 40.909 10.09 0.00 0.00 4.41
1873 4394 4.330074 CCTGCGGTAGAAATCACACTTAAG 59.670 45.833 0.00 0.00 0.00 1.85
1876 4397 2.301870 TCCTGCGGTAGAAATCACACTT 59.698 45.455 0.00 0.00 0.00 3.16
1878 4399 2.380084 TCCTGCGGTAGAAATCACAC 57.620 50.000 0.00 0.00 0.00 3.82
1883 4404 6.235231 TCTTAATCTTCCTGCGGTAGAAAT 57.765 37.500 7.70 4.17 33.08 2.17
1890 4411 2.611292 CTGCTTCTTAATCTTCCTGCGG 59.389 50.000 0.00 0.00 0.00 5.69
1891 4412 3.265791 ACTGCTTCTTAATCTTCCTGCG 58.734 45.455 0.00 0.00 0.00 5.18
1892 4413 6.540189 TCAATACTGCTTCTTAATCTTCCTGC 59.460 38.462 0.00 0.00 0.00 4.85
1916 4437 3.999001 TGACAGATGACAAGCAAGATGTC 59.001 43.478 0.00 0.00 45.82 3.06
1951 4472 4.705110 TCAACTCTGAAATGGAGGTTCA 57.295 40.909 0.00 0.00 35.34 3.18
2057 4579 2.584418 CTGAGGTCGATGCTGCCG 60.584 66.667 0.00 0.00 0.00 5.69
2158 4685 4.211374 GCCGACGTAAATTTATCTCAGCAT 59.789 41.667 0.31 0.00 0.00 3.79
2159 4686 3.554324 GCCGACGTAAATTTATCTCAGCA 59.446 43.478 0.31 0.00 0.00 4.41
2245 4775 6.372381 CCTGTGTTGTGATGAAATGTCAGATA 59.628 38.462 0.00 0.00 37.14 1.98
2317 4847 7.148606 GCATATCTTTCTCTTCCATCTTCATCG 60.149 40.741 0.00 0.00 0.00 3.84
2388 4918 3.184581 GCCAGTCAGTCACTAAAGTTTCG 59.815 47.826 0.00 0.00 32.21 3.46
2422 4952 3.009723 CGGCTTTCTTGGCTCTCATTTA 58.990 45.455 0.00 0.00 0.00 1.40
2443 4973 9.606631 ATGAGTAGAATTGACAGAAAAGGTATC 57.393 33.333 0.00 0.00 0.00 2.24
2459 4989 4.012374 CACAAACTGGGCATGAGTAGAAT 58.988 43.478 0.00 0.00 0.00 2.40
2469 4999 0.032615 AGGAAACCACAAACTGGGCA 60.033 50.000 0.00 0.00 45.78 5.36
2508 5038 9.062524 AGTACTTGTTCAACAGCACATTATAAA 57.937 29.630 0.00 0.00 0.00 1.40
2510 5040 9.713713 TTAGTACTTGTTCAACAGCACATTATA 57.286 29.630 0.00 0.00 0.00 0.98
2511 5041 8.615878 TTAGTACTTGTTCAACAGCACATTAT 57.384 30.769 0.00 0.00 0.00 1.28
2512 5042 8.439993 TTTAGTACTTGTTCAACAGCACATTA 57.560 30.769 0.00 0.00 0.00 1.90
2513 5043 6.935741 TTAGTACTTGTTCAACAGCACATT 57.064 33.333 0.00 0.00 0.00 2.71
2514 5044 6.935741 TTTAGTACTTGTTCAACAGCACAT 57.064 33.333 0.00 0.00 0.00 3.21
2515 5045 6.745159 TTTTAGTACTTGTTCAACAGCACA 57.255 33.333 0.00 0.00 0.00 4.57
2516 5046 8.015658 CCTATTTTAGTACTTGTTCAACAGCAC 58.984 37.037 0.00 0.00 0.00 4.40
2517 5047 7.934665 TCCTATTTTAGTACTTGTTCAACAGCA 59.065 33.333 0.00 0.00 0.00 4.41
2518 5048 8.319143 TCCTATTTTAGTACTTGTTCAACAGC 57.681 34.615 0.00 0.00 0.00 4.40
2526 5056 9.516546 CCCTCTTTTTCCTATTTTAGTACTTGT 57.483 33.333 0.00 0.00 0.00 3.16
2527 5057 9.516546 ACCCTCTTTTTCCTATTTTAGTACTTG 57.483 33.333 0.00 0.00 0.00 3.16
2528 5058 9.736414 GACCCTCTTTTTCCTATTTTAGTACTT 57.264 33.333 0.00 0.00 0.00 2.24
2529 5059 8.887393 TGACCCTCTTTTTCCTATTTTAGTACT 58.113 33.333 0.00 0.00 0.00 2.73
2530 5060 9.511272 TTGACCCTCTTTTTCCTATTTTAGTAC 57.489 33.333 0.00 0.00 0.00 2.73
2532 5062 8.857098 GTTTGACCCTCTTTTTCCTATTTTAGT 58.143 33.333 0.00 0.00 0.00 2.24
2533 5063 8.856103 TGTTTGACCCTCTTTTTCCTATTTTAG 58.144 33.333 0.00 0.00 0.00 1.85
2534 5064 8.770010 TGTTTGACCCTCTTTTTCCTATTTTA 57.230 30.769 0.00 0.00 0.00 1.52
2535 5065 7.669089 TGTTTGACCCTCTTTTTCCTATTTT 57.331 32.000 0.00 0.00 0.00 1.82
2536 5066 7.669089 TTGTTTGACCCTCTTTTTCCTATTT 57.331 32.000 0.00 0.00 0.00 1.40
2537 5067 6.239317 GCTTGTTTGACCCTCTTTTTCCTATT 60.239 38.462 0.00 0.00 0.00 1.73
2538 5068 5.243954 GCTTGTTTGACCCTCTTTTTCCTAT 59.756 40.000 0.00 0.00 0.00 2.57
2539 5069 4.583073 GCTTGTTTGACCCTCTTTTTCCTA 59.417 41.667 0.00 0.00 0.00 2.94
2540 5070 3.384789 GCTTGTTTGACCCTCTTTTTCCT 59.615 43.478 0.00 0.00 0.00 3.36
2541 5071 3.132111 TGCTTGTTTGACCCTCTTTTTCC 59.868 43.478 0.00 0.00 0.00 3.13
2542 5072 4.112634 GTGCTTGTTTGACCCTCTTTTTC 58.887 43.478 0.00 0.00 0.00 2.29
2543 5073 3.769300 AGTGCTTGTTTGACCCTCTTTTT 59.231 39.130 0.00 0.00 0.00 1.94
2544 5074 3.365472 AGTGCTTGTTTGACCCTCTTTT 58.635 40.909 0.00 0.00 0.00 2.27
2545 5075 2.952310 GAGTGCTTGTTTGACCCTCTTT 59.048 45.455 0.00 0.00 0.00 2.52
2546 5076 2.092429 TGAGTGCTTGTTTGACCCTCTT 60.092 45.455 0.00 0.00 0.00 2.85
2547 5077 1.490490 TGAGTGCTTGTTTGACCCTCT 59.510 47.619 0.00 0.00 0.00 3.69
2548 5078 1.876156 CTGAGTGCTTGTTTGACCCTC 59.124 52.381 0.00 0.00 0.00 4.30
2549 5079 1.490490 TCTGAGTGCTTGTTTGACCCT 59.510 47.619 0.00 0.00 0.00 4.34
2550 5080 1.967319 TCTGAGTGCTTGTTTGACCC 58.033 50.000 0.00 0.00 0.00 4.46
2551 5081 4.378874 GCTTATCTGAGTGCTTGTTTGACC 60.379 45.833 0.00 0.00 0.00 4.02
2552 5082 4.214119 TGCTTATCTGAGTGCTTGTTTGAC 59.786 41.667 0.00 0.00 0.00 3.18
2553 5083 4.388485 TGCTTATCTGAGTGCTTGTTTGA 58.612 39.130 0.00 0.00 0.00 2.69
2566 5096 1.133025 CCACCCGCTTTTGCTTATCTG 59.867 52.381 0.00 0.00 44.80 2.90
2568 5098 0.455815 CCCACCCGCTTTTGCTTATC 59.544 55.000 0.00 0.00 44.80 1.75
2571 5101 1.045911 TTTCCCACCCGCTTTTGCTT 61.046 50.000 0.00 0.00 44.80 3.91
2572 5102 1.045911 TTTTCCCACCCGCTTTTGCT 61.046 50.000 0.00 0.00 44.80 3.91
2584 5114 8.501904 TGGATCTATCATAATCTTGTTTTCCCA 58.498 33.333 0.00 0.00 0.00 4.37
2593 5124 8.521170 CATTGCCATGGATCTATCATAATCTT 57.479 34.615 18.40 0.00 0.00 2.40
2615 5146 3.950395 GACAGAGATTAAGGCTTGCCATT 59.050 43.478 10.69 7.79 0.00 3.16
2619 5150 5.017294 ACTAGACAGAGATTAAGGCTTGC 57.983 43.478 10.69 0.00 0.00 4.01
2642 5178 7.862675 ACTCCAGTATTTAGTAGCTCCAAAAT 58.137 34.615 0.00 0.00 0.00 1.82
2643 5179 7.253905 ACTCCAGTATTTAGTAGCTCCAAAA 57.746 36.000 0.00 0.00 0.00 2.44
2644 5180 6.869206 ACTCCAGTATTTAGTAGCTCCAAA 57.131 37.500 0.00 0.00 0.00 3.28
2646 5182 6.195700 AGAACTCCAGTATTTAGTAGCTCCA 58.804 40.000 0.00 0.00 0.00 3.86
2656 5192 7.176690 CCCACACAATAAAGAACTCCAGTATTT 59.823 37.037 0.00 0.00 0.00 1.40
2657 5193 6.659242 CCCACACAATAAAGAACTCCAGTATT 59.341 38.462 0.00 0.00 0.00 1.89
2659 5195 5.308497 TCCCACACAATAAAGAACTCCAGTA 59.692 40.000 0.00 0.00 0.00 2.74
2723 5259 5.583854 AGTCACTGCAGATAACATGAATGAC 59.416 40.000 23.35 18.27 34.35 3.06
2870 8028 1.344114 ACGCCAGCCATTTCATTTGTT 59.656 42.857 0.00 0.00 0.00 2.83
3012 8170 4.941263 GGCAACAGGGGGAATTAAAATTTC 59.059 41.667 0.00 0.00 0.00 2.17
3056 8214 4.326291 GGGAACAGGGGGAATTAAACCATA 60.326 45.833 4.80 0.00 0.00 2.74
3073 8231 2.172505 ACTGATCAACACACTGGGAACA 59.827 45.455 0.00 0.00 39.59 3.18
3074 8232 2.851195 ACTGATCAACACACTGGGAAC 58.149 47.619 0.00 0.00 0.00 3.62
3076 8234 2.028112 GCTACTGATCAACACACTGGGA 60.028 50.000 0.00 0.00 0.00 4.37
3077 8235 2.289631 TGCTACTGATCAACACACTGGG 60.290 50.000 0.00 0.00 0.00 4.45
3078 8236 3.044235 TGCTACTGATCAACACACTGG 57.956 47.619 0.00 0.00 0.00 4.00
3079 8237 5.618056 AAATGCTACTGATCAACACACTG 57.382 39.130 0.00 0.00 0.00 3.66
3080 8238 6.639632 AAAAATGCTACTGATCAACACACT 57.360 33.333 0.00 0.00 0.00 3.55
3115 8302 9.067986 AGTATTGTAAAATAGCCTTATCTTGCC 57.932 33.333 0.00 0.00 0.00 4.52
3146 8333 6.730960 TGACGTTGTCTAAAAGTTTCAAGT 57.269 33.333 0.00 0.00 33.15 3.16
3157 8344 3.745975 CCAAAGCAGATGACGTTGTCTAA 59.254 43.478 3.69 0.00 33.15 2.10
3160 8347 1.873591 ACCAAAGCAGATGACGTTGTC 59.126 47.619 0.00 0.00 0.00 3.18
3166 8353 4.084328 GCACGATATACCAAAGCAGATGAC 60.084 45.833 0.00 0.00 0.00 3.06
3167 8354 4.058124 GCACGATATACCAAAGCAGATGA 58.942 43.478 0.00 0.00 0.00 2.92
3172 8359 5.277106 CGTAAATGCACGATATACCAAAGCA 60.277 40.000 0.00 0.00 44.69 3.91
3173 8360 5.050634 TCGTAAATGCACGATATACCAAAGC 60.051 40.000 0.00 0.00 45.45 3.51
3196 8383 6.917533 CACCCATGCTATCTTTAATTCCATC 58.082 40.000 0.00 0.00 0.00 3.51
3243 8430 0.106268 TGAAGCTTGCCTGGTTTCCA 60.106 50.000 2.10 0.00 0.00 3.53
3246 8433 1.484038 TGTTGAAGCTTGCCTGGTTT 58.516 45.000 2.10 0.00 0.00 3.27
3254 8441 7.769272 TGGAAAAAGTTATTGTTGAAGCTTG 57.231 32.000 2.10 0.00 0.00 4.01
3257 8444 8.419076 TTCTTGGAAAAAGTTATTGTTGAAGC 57.581 30.769 0.00 0.00 0.00 3.86
3278 8465 3.744660 AGCCTGATTCGACAACTTTCTT 58.255 40.909 0.00 0.00 0.00 2.52
3284 8471 2.186076 CGACTAGCCTGATTCGACAAC 58.814 52.381 0.00 0.00 33.20 3.32
3286 8473 1.460504 ACGACTAGCCTGATTCGACA 58.539 50.000 5.32 0.00 35.45 4.35
3287 8474 2.452105 GAACGACTAGCCTGATTCGAC 58.548 52.381 5.32 0.00 35.45 4.20
3290 8479 2.159421 TCACGAACGACTAGCCTGATTC 60.159 50.000 0.14 0.00 0.00 2.52
3297 8486 0.731855 GGTGGTCACGAACGACTAGC 60.732 60.000 0.14 0.00 37.65 3.42
3374 8567 4.002982 TCAGAACGAAAGCATGCAGTAAT 58.997 39.130 21.98 0.56 0.00 1.89
3529 8722 2.091665 GGAATGATGGGGGAAGTCATGT 60.092 50.000 0.00 0.00 33.19 3.21
3614 8807 0.947244 AGCAAGCGGTTCAGAACTTG 59.053 50.000 13.13 10.61 41.89 3.16
3636 8829 5.004726 CACAAGGAAAAGCAAAAAGAACGAG 59.995 40.000 0.00 0.00 0.00 4.18
3638 8831 4.625311 ACACAAGGAAAAGCAAAAAGAACG 59.375 37.500 0.00 0.00 0.00 3.95
3639 8832 6.480524 AACACAAGGAAAAGCAAAAAGAAC 57.519 33.333 0.00 0.00 0.00 3.01
3640 8833 7.503521 AAAACACAAGGAAAAGCAAAAAGAA 57.496 28.000 0.00 0.00 0.00 2.52
3641 8834 8.608844 TTAAAACACAAGGAAAAGCAAAAAGA 57.391 26.923 0.00 0.00 0.00 2.52
3642 8835 9.838975 AATTAAAACACAAGGAAAAGCAAAAAG 57.161 25.926 0.00 0.00 0.00 2.27
3683 8876 6.757897 ATTTCACAGTTCAGAAGTTTCACA 57.242 33.333 0.00 0.00 0.00 3.58
3728 8921 3.505386 TGGCACACCCAACTATTTCAAT 58.495 40.909 0.00 0.00 41.82 2.57
3758 8951 8.664798 CCGAAAAATCATGTCATCTACTTGTAA 58.335 33.333 0.00 0.00 35.33 2.41
3761 8954 6.963242 CACCGAAAAATCATGTCATCTACTTG 59.037 38.462 0.00 0.00 35.16 3.16
3771 8974 3.511146 AGCAATCCACCGAAAAATCATGT 59.489 39.130 0.00 0.00 0.00 3.21
3782 8985 0.463295 ATCTGAGCAGCAATCCACCG 60.463 55.000 0.00 0.00 0.00 4.94
3784 8987 2.089980 ACAATCTGAGCAGCAATCCAC 58.910 47.619 0.00 0.00 0.00 4.02
3833 9041 4.396166 GCACTATCAAACATTAGCCACTGT 59.604 41.667 0.00 0.00 0.00 3.55
3846 9054 2.100087 TCTATGTCGCGGCACTATCAAA 59.900 45.455 19.15 0.00 0.00 2.69
3849 9057 1.267261 ACTCTATGTCGCGGCACTATC 59.733 52.381 19.15 0.00 0.00 2.08
3857 9065 0.380733 TGCAGGTACTCTATGTCGCG 59.619 55.000 0.00 0.00 34.60 5.87
3860 9068 8.768955 CAATTTCTAATGCAGGTACTCTATGTC 58.231 37.037 0.00 0.00 34.60 3.06
3903 9111 7.022055 TGTTAGCTTTTGACAATCGAAAGAA 57.978 32.000 18.66 5.90 46.10 2.52
3909 9117 4.679654 GGGTTTGTTAGCTTTTGACAATCG 59.320 41.667 0.00 0.00 35.50 3.34
3912 9120 4.027437 AGGGGTTTGTTAGCTTTTGACAA 58.973 39.130 0.00 0.00 33.90 3.18
3913 9121 3.637769 AGGGGTTTGTTAGCTTTTGACA 58.362 40.909 0.00 0.00 0.00 3.58
3914 9122 4.500887 GGAAGGGGTTTGTTAGCTTTTGAC 60.501 45.833 0.00 0.00 0.00 3.18
3915 9123 3.639561 GGAAGGGGTTTGTTAGCTTTTGA 59.360 43.478 0.00 0.00 0.00 2.69
3916 9124 3.244078 GGGAAGGGGTTTGTTAGCTTTTG 60.244 47.826 0.00 0.00 0.00 2.44
3917 9125 2.969950 GGGAAGGGGTTTGTTAGCTTTT 59.030 45.455 0.00 0.00 0.00 2.27
3918 9126 2.605257 GGGAAGGGGTTTGTTAGCTTT 58.395 47.619 0.00 0.00 0.00 3.51
3919 9127 1.203137 GGGGAAGGGGTTTGTTAGCTT 60.203 52.381 0.00 0.00 0.00 3.74
3920 9128 0.408309 GGGGAAGGGGTTTGTTAGCT 59.592 55.000 0.00 0.00 0.00 3.32
3922 9130 2.109304 TCAAGGGGAAGGGGTTTGTTAG 59.891 50.000 0.00 0.00 0.00 2.34
3924 9132 0.938192 TCAAGGGGAAGGGGTTTGTT 59.062 50.000 0.00 0.00 0.00 2.83
3925 9133 0.938192 TTCAAGGGGAAGGGGTTTGT 59.062 50.000 0.00 0.00 0.00 2.83
3926 9134 3.861002 TTCAAGGGGAAGGGGTTTG 57.139 52.632 0.00 0.00 0.00 2.93
3934 9142 4.100808 CCAAAACACAATCTTCAAGGGGAA 59.899 41.667 0.00 0.00 0.00 3.97
3935 9143 3.640967 CCAAAACACAATCTTCAAGGGGA 59.359 43.478 0.00 0.00 0.00 4.81
3936 9144 3.640967 TCCAAAACACAATCTTCAAGGGG 59.359 43.478 0.00 0.00 0.00 4.79
3937 9145 4.935352 TCCAAAACACAATCTTCAAGGG 57.065 40.909 0.00 0.00 0.00 3.95
3938 9146 6.209391 AGGTATCCAAAACACAATCTTCAAGG 59.791 38.462 0.00 0.00 0.00 3.61
3939 9147 7.086376 CAGGTATCCAAAACACAATCTTCAAG 58.914 38.462 0.00 0.00 0.00 3.02
3940 9148 6.015519 CCAGGTATCCAAAACACAATCTTCAA 60.016 38.462 0.00 0.00 0.00 2.69
3941 9149 5.476599 CCAGGTATCCAAAACACAATCTTCA 59.523 40.000 0.00 0.00 0.00 3.02
3942 9150 5.105756 CCCAGGTATCCAAAACACAATCTTC 60.106 44.000 0.00 0.00 0.00 2.87
3943 9151 4.772100 CCCAGGTATCCAAAACACAATCTT 59.228 41.667 0.00 0.00 0.00 2.40
3944 9152 4.344104 CCCAGGTATCCAAAACACAATCT 58.656 43.478 0.00 0.00 0.00 2.40
3945 9153 3.447229 CCCCAGGTATCCAAAACACAATC 59.553 47.826 0.00 0.00 0.00 2.67
3946 9154 3.076785 TCCCCAGGTATCCAAAACACAAT 59.923 43.478 0.00 0.00 0.00 2.71
3947 9155 2.447429 TCCCCAGGTATCCAAAACACAA 59.553 45.455 0.00 0.00 0.00 3.33
3948 9156 2.066592 TCCCCAGGTATCCAAAACACA 58.933 47.619 0.00 0.00 0.00 3.72
3949 9157 2.224917 TGTCCCCAGGTATCCAAAACAC 60.225 50.000 0.00 0.00 0.00 3.32
3950 9158 2.066592 TGTCCCCAGGTATCCAAAACA 58.933 47.619 0.00 0.00 0.00 2.83
3951 9159 2.891191 TGTCCCCAGGTATCCAAAAC 57.109 50.000 0.00 0.00 0.00 2.43
3952 9160 3.905493 TTTGTCCCCAGGTATCCAAAA 57.095 42.857 0.00 0.00 0.00 2.44
3953 9161 3.565449 CCATTTGTCCCCAGGTATCCAAA 60.565 47.826 0.00 0.00 0.00 3.28
3954 9162 2.024464 CCATTTGTCCCCAGGTATCCAA 60.024 50.000 0.00 0.00 0.00 3.53
3955 9163 1.568597 CCATTTGTCCCCAGGTATCCA 59.431 52.381 0.00 0.00 0.00 3.41
3956 9164 1.754201 GCCATTTGTCCCCAGGTATCC 60.754 57.143 0.00 0.00 0.00 2.59
3957 9165 1.692411 GCCATTTGTCCCCAGGTATC 58.308 55.000 0.00 0.00 0.00 2.24
3958 9166 0.261696 GGCCATTTGTCCCCAGGTAT 59.738 55.000 0.00 0.00 0.00 2.73
3959 9167 1.694856 GGCCATTTGTCCCCAGGTA 59.305 57.895 0.00 0.00 0.00 3.08
3960 9168 2.445155 GGCCATTTGTCCCCAGGT 59.555 61.111 0.00 0.00 0.00 4.00
3961 9169 2.755469 CGGCCATTTGTCCCCAGG 60.755 66.667 2.24 0.00 0.00 4.45
3962 9170 2.755469 CCGGCCATTTGTCCCCAG 60.755 66.667 2.24 0.00 0.00 4.45
3964 9172 4.759205 AGCCGGCCATTTGTCCCC 62.759 66.667 26.15 0.00 0.00 4.81
3965 9173 2.679996 AAGCCGGCCATTTGTCCC 60.680 61.111 26.15 0.00 0.00 4.46
3966 9174 2.212900 GACAAGCCGGCCATTTGTCC 62.213 60.000 33.68 22.20 42.91 4.02
3967 9175 1.212751 GACAAGCCGGCCATTTGTC 59.787 57.895 31.82 31.82 42.46 3.18
3968 9176 0.899717 ATGACAAGCCGGCCATTTGT 60.900 50.000 27.02 27.02 37.72 2.83
3969 9177 0.179129 GATGACAAGCCGGCCATTTG 60.179 55.000 26.15 23.41 0.00 2.32
3970 9178 0.323725 AGATGACAAGCCGGCCATTT 60.324 50.000 26.15 11.81 0.00 2.32
3971 9179 0.749454 GAGATGACAAGCCGGCCATT 60.749 55.000 26.15 9.42 0.00 3.16
3972 9180 1.153086 GAGATGACAAGCCGGCCAT 60.153 57.895 26.15 19.63 0.00 4.40
3973 9181 2.268920 GAGATGACAAGCCGGCCA 59.731 61.111 26.15 15.00 0.00 5.36
3974 9182 2.514824 GGAGATGACAAGCCGGCC 60.515 66.667 26.15 8.39 0.00 6.13
3975 9183 2.109126 GTGGAGATGACAAGCCGGC 61.109 63.158 21.89 21.89 0.00 6.13
3976 9184 1.021390 GTGTGGAGATGACAAGCCGG 61.021 60.000 0.00 0.00 0.00 6.13
3977 9185 1.021390 GGTGTGGAGATGACAAGCCG 61.021 60.000 0.00 0.00 0.00 5.52
3978 9186 0.326264 AGGTGTGGAGATGACAAGCC 59.674 55.000 0.00 0.00 0.00 4.35
3979 9187 1.446907 CAGGTGTGGAGATGACAAGC 58.553 55.000 0.00 0.00 0.00 4.01
3990 9198 3.721087 AAGTTCTATTCCCAGGTGTGG 57.279 47.619 0.00 0.00 44.56 4.17
3991 9199 5.160607 TGTAAGTTCTATTCCCAGGTGTG 57.839 43.478 0.00 0.00 0.00 3.82
3992 9200 6.215636 AGAATGTAAGTTCTATTCCCAGGTGT 59.784 38.462 7.87 0.00 36.71 4.16
3993 9201 6.653989 AGAATGTAAGTTCTATTCCCAGGTG 58.346 40.000 7.87 0.00 36.71 4.00
3994 9202 6.893020 AGAATGTAAGTTCTATTCCCAGGT 57.107 37.500 7.87 0.00 36.71 4.00
3995 9203 7.066284 CACAAGAATGTAAGTTCTATTCCCAGG 59.934 40.741 7.87 0.00 37.82 4.45
3996 9204 7.607991 ACACAAGAATGTAAGTTCTATTCCCAG 59.392 37.037 7.87 3.24 37.82 4.45
3997 9205 7.390440 CACACAAGAATGTAAGTTCTATTCCCA 59.610 37.037 7.87 0.00 37.82 4.37
3998 9206 7.148239 CCACACAAGAATGTAAGTTCTATTCCC 60.148 40.741 7.87 0.00 37.82 3.97
3999 9207 7.390718 ACCACACAAGAATGTAAGTTCTATTCC 59.609 37.037 7.87 0.00 37.82 3.01
4000 9208 8.324163 ACCACACAAGAATGTAAGTTCTATTC 57.676 34.615 4.61 4.61 37.82 1.75
4001 9209 8.691661 AACCACACAAGAATGTAAGTTCTATT 57.308 30.769 0.00 0.00 37.82 1.73
4002 9210 8.691661 AAACCACACAAGAATGTAAGTTCTAT 57.308 30.769 0.00 0.00 37.82 1.98
4003 9211 8.514330 AAAACCACACAAGAATGTAAGTTCTA 57.486 30.769 0.00 0.00 37.82 2.10
4004 9212 7.339466 AGAAAACCACACAAGAATGTAAGTTCT 59.661 33.333 0.00 0.00 37.82 3.01
4005 9213 7.480810 AGAAAACCACACAAGAATGTAAGTTC 58.519 34.615 0.00 0.00 37.82 3.01
4006 9214 7.404671 AGAAAACCACACAAGAATGTAAGTT 57.595 32.000 0.00 0.00 37.82 2.66
4007 9215 7.404671 AAGAAAACCACACAAGAATGTAAGT 57.595 32.000 0.00 0.00 37.82 2.24
4008 9216 8.190784 AGAAAGAAAACCACACAAGAATGTAAG 58.809 33.333 0.00 0.00 37.82 2.34
4009 9217 8.062065 AGAAAGAAAACCACACAAGAATGTAA 57.938 30.769 0.00 0.00 37.82 2.41
4010 9218 7.639113 AGAAAGAAAACCACACAAGAATGTA 57.361 32.000 0.00 0.00 37.82 2.29
4011 9219 6.530019 AGAAAGAAAACCACACAAGAATGT 57.470 33.333 0.00 0.00 41.61 2.71
4012 9220 6.813152 ACAAGAAAGAAAACCACACAAGAATG 59.187 34.615 0.00 0.00 0.00 2.67
4013 9221 6.813152 CACAAGAAAGAAAACCACACAAGAAT 59.187 34.615 0.00 0.00 0.00 2.40
4014 9222 6.015856 TCACAAGAAAGAAAACCACACAAGAA 60.016 34.615 0.00 0.00 0.00 2.52
4015 9223 5.475220 TCACAAGAAAGAAAACCACACAAGA 59.525 36.000 0.00 0.00 0.00 3.02
4016 9224 5.708948 TCACAAGAAAGAAAACCACACAAG 58.291 37.500 0.00 0.00 0.00 3.16
4017 9225 5.713792 TCACAAGAAAGAAAACCACACAA 57.286 34.783 0.00 0.00 0.00 3.33
4018 9226 5.475220 TCTTCACAAGAAAGAAAACCACACA 59.525 36.000 0.00 0.00 33.83 3.72
4019 9227 5.949735 TCTTCACAAGAAAGAAAACCACAC 58.050 37.500 0.00 0.00 33.83 3.82
4020 9228 6.582677 TTCTTCACAAGAAAGAAAACCACA 57.417 33.333 0.00 0.00 44.10 4.17
4046 9254 5.936956 AGCAAATACTCTTCAGGTTCTCTTG 59.063 40.000 0.00 0.00 0.00 3.02
4077 9285 4.090354 CGCGCAATCAAAGATGACAAAAAT 59.910 37.500 8.75 0.00 38.69 1.82
4121 9329 1.537202 GACTAGCAAGCACAAAGTGGG 59.463 52.381 0.00 0.00 33.64 4.61
4122 9330 2.031682 GTGACTAGCAAGCACAAAGTGG 60.032 50.000 0.00 0.00 33.64 4.00
4123 9331 2.613595 TGTGACTAGCAAGCACAAAGTG 59.386 45.455 0.00 0.00 37.05 3.16
4124 9332 2.614057 GTGTGACTAGCAAGCACAAAGT 59.386 45.455 9.10 0.00 39.66 2.66
4185 9394 9.883142 TCCTTTAGCAAATTCTCAAAAAGAAAA 57.117 25.926 0.00 0.00 46.85 2.29
4186 9395 9.883142 TTCCTTTAGCAAATTCTCAAAAAGAAA 57.117 25.926 0.00 0.00 46.85 2.52
4188 9397 9.696917 GATTCCTTTAGCAAATTCTCAAAAAGA 57.303 29.630 0.00 0.00 0.00 2.52
4189 9398 9.702494 AGATTCCTTTAGCAAATTCTCAAAAAG 57.298 29.630 0.00 0.00 0.00 2.27
4190 9399 9.480053 CAGATTCCTTTAGCAAATTCTCAAAAA 57.520 29.630 0.00 0.00 0.00 1.94
4367 9578 3.198635 TCAAACCTTTGACAAAATGGCCA 59.801 39.130 8.56 8.56 41.88 5.36
4389 9601 8.270744 GCAATTAATATGGATCAGAGGGAGTAT 58.729 37.037 0.00 0.00 0.00 2.12
4396 9608 6.812879 TGCTGCAATTAATATGGATCAGAG 57.187 37.500 0.00 0.00 0.00 3.35
4415 9627 6.427853 TCTCCGATCCATATTAATTGTTGCTG 59.572 38.462 0.00 0.00 0.00 4.41
4416 9628 6.533730 TCTCCGATCCATATTAATTGTTGCT 58.466 36.000 0.00 0.00 0.00 3.91
4419 9631 7.967908 ACTCTCTCCGATCCATATTAATTGTT 58.032 34.615 0.00 0.00 0.00 2.83
4480 9718 0.756294 TCTTCACCAACTCTTCGGCA 59.244 50.000 0.00 0.00 0.00 5.69
4484 9722 8.884726 GGAATAATACTTCTTCACCAACTCTTC 58.115 37.037 0.00 0.00 0.00 2.87
4500 9738 8.502738 TCTGCCCTTTTTATCTGGAATAATACT 58.497 33.333 0.00 0.00 0.00 2.12
4506 9744 6.933514 TTTTCTGCCCTTTTTATCTGGAAT 57.066 33.333 0.00 0.00 0.00 3.01
4507 9745 6.933514 ATTTTCTGCCCTTTTTATCTGGAA 57.066 33.333 0.00 0.00 0.00 3.53
4508 9746 9.131791 GTATATTTTCTGCCCTTTTTATCTGGA 57.868 33.333 0.00 0.00 0.00 3.86
4521 9759 6.002062 CGAAAGGGATGTATATTTTCTGCC 57.998 41.667 0.00 0.00 0.00 4.85
4539 9777 1.590932 CATGCAGATCTCCCCGAAAG 58.409 55.000 0.00 0.00 0.00 2.62
4541 9779 1.146930 GCATGCAGATCTCCCCGAA 59.853 57.895 14.21 0.00 0.00 4.30
4543 9781 1.597302 CAGCATGCAGATCTCCCCG 60.597 63.158 21.98 0.00 0.00 5.73
4544 9782 0.534652 GACAGCATGCAGATCTCCCC 60.535 60.000 21.98 0.00 42.53 4.81
4545 9783 0.879400 CGACAGCATGCAGATCTCCC 60.879 60.000 21.98 0.00 42.53 4.30
4546 9784 0.179089 ACGACAGCATGCAGATCTCC 60.179 55.000 21.98 0.50 42.53 3.71
4548 9786 0.527169 CGACGACAGCATGCAGATCT 60.527 55.000 21.98 0.00 42.53 2.75
4550 9788 0.803768 GTCGACGACAGCATGCAGAT 60.804 55.000 22.66 3.98 42.53 2.90
4551 9789 1.444383 GTCGACGACAGCATGCAGA 60.444 57.895 22.66 4.41 42.53 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.