Multiple sequence alignment - TraesCS7D01G037100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G037100 chr7D 100.000 2745 0 0 1 2745 18880143 18877399 0.000000e+00 5070.0
1 TraesCS7D01G037100 chr7D 76.953 512 72 29 996 1474 18926577 18927075 1.630000e-62 250.0
2 TraesCS7D01G037100 chr7D 74.443 673 105 38 2103 2745 490439359 490439994 7.650000e-56 228.0
3 TraesCS7D01G037100 chr7D 88.514 148 11 2 1544 1688 18927007 18927151 1.010000e-39 174.0
4 TraesCS7D01G037100 chr7D 77.917 240 31 18 585 809 18926247 18926479 2.220000e-26 130.0
5 TraesCS7D01G037100 chr7D 80.460 174 21 11 592 763 18842455 18842293 1.340000e-23 121.0
6 TraesCS7D01G037100 chr7A 87.620 1349 75 27 576 1892 19252679 19251391 0.000000e+00 1482.0
7 TraesCS7D01G037100 chr7A 91.297 632 41 7 1231 1848 19215809 19215178 0.000000e+00 850.0
8 TraesCS7D01G037100 chr7A 81.143 875 108 30 1890 2745 19236570 19235734 0.000000e+00 649.0
9 TraesCS7D01G037100 chr7A 84.036 332 35 13 1155 1474 19418229 19418554 1.240000e-78 303.0
10 TraesCS7D01G037100 chr7A 84.912 285 26 6 1117 1387 19377581 19377862 3.480000e-69 272.0
11 TraesCS7D01G037100 chr7A 84.397 282 23 9 1155 1418 19372141 19372419 9.750000e-65 257.0
12 TraesCS7D01G037100 chr7A 92.241 116 8 1 1901 2015 19215075 19214960 2.190000e-36 163.0
13 TraesCS7D01G037100 chr7A 84.177 158 16 4 1559 1713 19418501 19418652 7.920000e-31 145.0
14 TraesCS7D01G037100 chr7A 90.816 98 8 1 1591 1688 19235619 19235523 2.220000e-26 130.0
15 TraesCS7D01G037100 chr7A 83.784 111 9 4 1504 1611 19382748 19382852 2.250000e-16 97.1
16 TraesCS7D01G037100 chr4A 89.336 1069 75 18 941 1982 713120013 713121069 0.000000e+00 1306.0
17 TraesCS7D01G037100 chr4A 87.087 333 26 10 1161 1479 713140329 713140658 7.230000e-96 361.0
18 TraesCS7D01G037100 chr4A 79.655 521 61 24 995 1474 713830007 713830523 1.580000e-87 333.0
19 TraesCS7D01G037100 chr4A 81.215 362 32 12 548 893 713119672 713120013 2.710000e-65 259.0
20 TraesCS7D01G037100 chr4A 92.121 165 13 0 1617 1781 713140676 713140840 1.640000e-57 233.0
21 TraesCS7D01G037100 chr4A 78.215 381 53 14 995 1353 713399182 713399554 1.660000e-52 217.0
22 TraesCS7D01G037100 chr4A 87.568 185 11 3 1504 1688 713830430 713830602 1.290000e-48 204.0
23 TraesCS7D01G037100 chr4A 92.982 57 4 0 1981 2037 713121299 713121355 1.750000e-12 84.2
24 TraesCS7D01G037100 chr2A 78.097 452 63 19 2103 2549 102894273 102893853 1.260000e-63 254.0
25 TraesCS7D01G037100 chr2D 77.234 470 63 22 2103 2556 610849717 610849276 4.570000e-58 235.0
26 TraesCS7D01G037100 chr2D 74.828 290 44 19 2208 2483 10215967 10215693 1.340000e-18 104.0
27 TraesCS7D01G037100 chr2B 76.923 468 71 18 2103 2549 755339674 755340125 5.910000e-57 231.0
28 TraesCS7D01G037100 chr2B 80.769 104 13 5 2308 2407 46417349 46417449 1.050000e-09 75.0
29 TraesCS7D01G037100 chr6B 78.316 392 55 21 2103 2477 705963144 705962766 2.750000e-55 226.0
30 TraesCS7D01G037100 chr6B 95.652 46 2 0 2210 2255 50069550 50069505 1.050000e-09 75.0
31 TraesCS7D01G037100 chr1A 75.058 433 70 22 2141 2556 531655617 531655206 1.690000e-37 167.0
32 TraesCS7D01G037100 chr5B 81.818 187 14 5 315 484 587447058 587446875 3.690000e-29 139.0
33 TraesCS7D01G037100 chr6A 83.673 147 19 5 2106 2249 36494521 36494377 1.710000e-27 134.0
34 TraesCS7D01G037100 chr4D 73.656 372 65 25 2196 2556 70996664 70996315 2.230000e-21 113.0
35 TraesCS7D01G037100 chr5D 85.567 97 12 2 2103 2197 217725070 217725166 1.740000e-17 100.0
36 TraesCS7D01G037100 chr3B 76.433 157 27 9 1874 2027 529674483 529674334 2.930000e-10 76.8
37 TraesCS7D01G037100 chr1B 89.091 55 6 0 2433 2487 606362658 606362604 4.910000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G037100 chr7D 18877399 18880143 2744 True 5070.000000 5070 100.000000 1 2745 1 chr7D.!!$R2 2744
1 TraesCS7D01G037100 chr7D 490439359 490439994 635 False 228.000000 228 74.443000 2103 2745 1 chr7D.!!$F1 642
2 TraesCS7D01G037100 chr7A 19251391 19252679 1288 True 1482.000000 1482 87.620000 576 1892 1 chr7A.!!$R1 1316
3 TraesCS7D01G037100 chr7A 19214960 19215809 849 True 506.500000 850 91.769000 1231 2015 2 chr7A.!!$R2 784
4 TraesCS7D01G037100 chr7A 19235523 19236570 1047 True 389.500000 649 85.979500 1591 2745 2 chr7A.!!$R3 1154
5 TraesCS7D01G037100 chr4A 713119672 713121355 1683 False 549.733333 1306 87.844333 548 2037 3 chr4A.!!$F2 1489
6 TraesCS7D01G037100 chr4A 713140329 713140840 511 False 297.000000 361 89.604000 1161 1781 2 chr4A.!!$F3 620
7 TraesCS7D01G037100 chr4A 713830007 713830602 595 False 268.500000 333 83.611500 995 1688 2 chr4A.!!$F4 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.036765 AGTCCATGCGCGGAACTAAA 60.037 50.0 3.18 0.0 36.62 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 2489 0.040514 TCCTTTCGTTGCAATGCACG 60.041 50.0 7.72 15.06 38.71 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.802051 TCAAGCTCCCGGCATGGC 62.802 66.667 9.69 9.69 44.79 4.40
27 28 4.899239 GGCATGGCGCGTCTAGCT 62.899 66.667 22.86 0.00 45.59 3.32
28 29 2.892425 GCATGGCGCGTCTAGCTT 60.892 61.111 13.81 0.00 45.59 3.74
29 30 1.591594 GCATGGCGCGTCTAGCTTA 60.592 57.895 13.81 0.00 45.59 3.09
30 31 1.552348 GCATGGCGCGTCTAGCTTAG 61.552 60.000 13.81 0.00 45.59 2.18
31 32 0.941463 CATGGCGCGTCTAGCTTAGG 60.941 60.000 13.81 0.00 45.59 2.69
32 33 2.658918 GGCGCGTCTAGCTTAGGC 60.659 66.667 8.43 0.00 45.59 3.93
39 40 2.588027 GTCTAGCTTAGGCGCTCTTT 57.412 50.000 7.64 0.00 44.37 2.52
40 41 2.465855 GTCTAGCTTAGGCGCTCTTTC 58.534 52.381 7.64 0.00 44.37 2.62
41 42 1.065701 TCTAGCTTAGGCGCTCTTTCG 59.934 52.381 7.64 0.00 44.37 3.46
42 43 1.065701 CTAGCTTAGGCGCTCTTTCGA 59.934 52.381 7.64 0.00 44.37 3.71
43 44 0.461961 AGCTTAGGCGCTCTTTCGAT 59.538 50.000 7.64 0.00 44.37 3.59
47 48 3.444916 CTTAGGCGCTCTTTCGATAACA 58.555 45.455 7.64 0.00 0.00 2.41
52 53 4.873827 AGGCGCTCTTTCGATAACAAAATA 59.126 37.500 7.64 0.00 0.00 1.40
53 54 5.353123 AGGCGCTCTTTCGATAACAAAATAA 59.647 36.000 7.64 0.00 0.00 1.40
54 55 6.025280 GGCGCTCTTTCGATAACAAAATAAA 58.975 36.000 7.64 0.00 0.00 1.40
55 56 6.691388 GGCGCTCTTTCGATAACAAAATAAAT 59.309 34.615 7.64 0.00 0.00 1.40
56 57 7.853929 GGCGCTCTTTCGATAACAAAATAAATA 59.146 33.333 7.64 0.00 0.00 1.40
57 58 9.217223 GCGCTCTTTCGATAACAAAATAAATAA 57.783 29.630 0.00 0.00 0.00 1.40
78 79 9.554724 AAATAAATCTACGTGTACTTGCATTTG 57.445 29.630 0.00 0.00 0.00 2.32
79 80 6.554334 AAATCTACGTGTACTTGCATTTGT 57.446 33.333 0.00 0.00 0.00 2.83
80 81 5.779806 ATCTACGTGTACTTGCATTTGTC 57.220 39.130 0.00 0.00 0.00 3.18
81 82 2.941891 ACGTGTACTTGCATTTGTCG 57.058 45.000 0.00 0.00 0.00 4.35
83 84 2.475111 ACGTGTACTTGCATTTGTCGAG 59.525 45.455 0.00 0.00 0.00 4.04
85 86 3.181540 CGTGTACTTGCATTTGTCGAGAG 60.182 47.826 0.00 0.00 0.00 3.20
86 87 2.736721 TGTACTTGCATTTGTCGAGAGC 59.263 45.455 0.00 0.00 0.00 4.09
87 88 2.175878 ACTTGCATTTGTCGAGAGCT 57.824 45.000 0.00 0.00 0.00 4.09
89 90 2.880890 ACTTGCATTTGTCGAGAGCTTT 59.119 40.909 0.00 0.00 0.00 3.51
90 91 3.058639 ACTTGCATTTGTCGAGAGCTTTC 60.059 43.478 0.00 0.00 0.00 2.62
91 92 1.806542 TGCATTTGTCGAGAGCTTTCC 59.193 47.619 0.00 0.00 0.00 3.13
92 93 1.201965 GCATTTGTCGAGAGCTTTCCG 60.202 52.381 0.00 0.00 0.00 4.30
94 95 2.743636 TTTGTCGAGAGCTTTCCGAT 57.256 45.000 8.79 0.00 34.71 4.18
96 97 2.846039 TGTCGAGAGCTTTCCGATAC 57.154 50.000 8.79 0.00 34.71 2.24
97 98 2.089201 TGTCGAGAGCTTTCCGATACA 58.911 47.619 8.79 2.00 34.71 2.29
98 99 2.097629 TGTCGAGAGCTTTCCGATACAG 59.902 50.000 8.79 0.00 34.71 2.74
99 100 1.676529 TCGAGAGCTTTCCGATACAGG 59.323 52.381 0.00 0.00 0.00 4.00
100 101 1.405821 CGAGAGCTTTCCGATACAGGT 59.594 52.381 0.00 0.00 0.00 4.00
101 102 2.159226 CGAGAGCTTTCCGATACAGGTT 60.159 50.000 0.00 0.00 0.00 3.50
102 103 3.676324 CGAGAGCTTTCCGATACAGGTTT 60.676 47.826 0.00 0.00 0.00 3.27
103 104 3.600388 AGAGCTTTCCGATACAGGTTTG 58.400 45.455 0.00 0.00 0.00 2.93
104 105 3.008049 AGAGCTTTCCGATACAGGTTTGT 59.992 43.478 0.00 0.00 41.39 2.83
105 106 3.335579 AGCTTTCCGATACAGGTTTGTC 58.664 45.455 0.00 0.00 38.76 3.18
106 107 3.008049 AGCTTTCCGATACAGGTTTGTCT 59.992 43.478 0.00 0.00 38.76 3.41
107 108 3.125316 GCTTTCCGATACAGGTTTGTCTG 59.875 47.826 0.00 0.00 38.76 3.51
111 112 4.566004 TCCGATACAGGTTTGTCTGAAAG 58.434 43.478 0.00 0.00 38.76 2.62
112 113 3.125316 CCGATACAGGTTTGTCTGAAAGC 59.875 47.826 0.00 0.00 38.76 3.51
113 114 3.997021 CGATACAGGTTTGTCTGAAAGCT 59.003 43.478 0.00 0.00 38.76 3.74
114 115 4.452455 CGATACAGGTTTGTCTGAAAGCTT 59.548 41.667 0.00 0.00 38.76 3.74
115 116 5.615544 CGATACAGGTTTGTCTGAAAGCTTG 60.616 44.000 0.00 0.00 38.76 4.01
116 117 3.356290 ACAGGTTTGTCTGAAAGCTTGT 58.644 40.909 0.00 0.00 36.00 3.16
117 118 3.378427 ACAGGTTTGTCTGAAAGCTTGTC 59.622 43.478 0.00 0.48 36.00 3.18
118 119 3.629398 CAGGTTTGTCTGAAAGCTTGTCT 59.371 43.478 0.00 0.00 36.00 3.41
121 122 4.260948 GGTTTGTCTGAAAGCTTGTCTGAG 60.261 45.833 0.00 0.00 0.00 3.35
122 123 2.487934 TGTCTGAAAGCTTGTCTGAGC 58.512 47.619 0.00 5.75 43.02 4.26
132 133 4.767633 GTCTGAGCGACACCTACG 57.232 61.111 0.00 0.00 42.37 3.51
133 134 2.168947 GTCTGAGCGACACCTACGA 58.831 57.895 0.00 0.00 42.37 3.43
134 135 0.179194 GTCTGAGCGACACCTACGAC 60.179 60.000 0.00 0.00 42.37 4.34
136 137 0.179187 CTGAGCGACACCTACGACAG 60.179 60.000 0.00 0.00 33.71 3.51
138 139 0.179194 GAGCGACACCTACGACAGTC 60.179 60.000 0.00 0.00 0.00 3.51
140 141 1.859427 GCGACACCTACGACAGTCCA 61.859 60.000 0.00 0.00 0.00 4.02
144 145 0.802222 CACCTACGACAGTCCATGCG 60.802 60.000 0.00 0.00 35.46 4.73
145 146 1.878522 CCTACGACAGTCCATGCGC 60.879 63.158 0.00 0.00 33.51 6.09
146 147 2.202557 TACGACAGTCCATGCGCG 60.203 61.111 0.00 0.00 36.43 6.86
147 148 3.693382 TACGACAGTCCATGCGCGG 62.693 63.158 8.83 0.00 35.14 6.46
148 149 4.794439 CGACAGTCCATGCGCGGA 62.794 66.667 8.83 5.00 0.00 5.54
149 150 2.434185 GACAGTCCATGCGCGGAA 60.434 61.111 3.18 0.00 36.62 4.30
150 151 2.740714 GACAGTCCATGCGCGGAAC 61.741 63.158 3.18 0.00 36.62 3.62
151 152 2.434884 CAGTCCATGCGCGGAACT 60.435 61.111 3.18 0.00 36.62 3.01
152 153 1.153647 CAGTCCATGCGCGGAACTA 60.154 57.895 3.18 0.00 36.62 2.24
153 154 0.739462 CAGTCCATGCGCGGAACTAA 60.739 55.000 3.18 0.00 36.62 2.24
154 155 0.036765 AGTCCATGCGCGGAACTAAA 60.037 50.000 3.18 0.00 36.62 1.85
155 156 0.800012 GTCCATGCGCGGAACTAAAA 59.200 50.000 3.18 0.00 36.62 1.52
157 158 0.802494 CCATGCGCGGAACTAAAAGT 59.198 50.000 3.18 0.00 0.00 2.66
158 159 1.465689 CCATGCGCGGAACTAAAAGTG 60.466 52.381 3.18 0.00 0.00 3.16
160 161 0.584396 TGCGCGGAACTAAAAGTGTG 59.416 50.000 8.83 0.00 0.00 3.82
161 162 0.863144 GCGCGGAACTAAAAGTGTGA 59.137 50.000 8.83 0.00 0.00 3.58
162 163 1.463444 GCGCGGAACTAAAAGTGTGAT 59.537 47.619 8.83 0.00 0.00 3.06
163 164 2.474032 GCGCGGAACTAAAAGTGTGATC 60.474 50.000 8.83 0.00 0.00 2.92
164 165 2.093783 CGCGGAACTAAAAGTGTGATCC 59.906 50.000 0.00 0.00 0.00 3.36
166 167 3.670625 CGGAACTAAAAGTGTGATCCCA 58.329 45.455 0.00 0.00 0.00 4.37
167 168 4.261801 CGGAACTAAAAGTGTGATCCCAT 58.738 43.478 0.00 0.00 0.00 4.00
168 169 4.094887 CGGAACTAAAAGTGTGATCCCATG 59.905 45.833 0.00 0.00 0.00 3.66
169 170 5.010282 GGAACTAAAAGTGTGATCCCATGT 58.990 41.667 0.00 0.00 0.00 3.21
170 171 5.123979 GGAACTAAAAGTGTGATCCCATGTC 59.876 44.000 0.00 0.00 0.00 3.06
171 172 4.253685 ACTAAAAGTGTGATCCCATGTCG 58.746 43.478 0.00 0.00 0.00 4.35
172 173 1.453155 AAAGTGTGATCCCATGTCGC 58.547 50.000 0.00 0.00 0.00 5.19
173 174 0.615331 AAGTGTGATCCCATGTCGCT 59.385 50.000 0.00 0.00 0.00 4.93
175 176 1.410517 AGTGTGATCCCATGTCGCTAG 59.589 52.381 0.00 0.00 0.00 3.42
176 177 1.137086 GTGTGATCCCATGTCGCTAGT 59.863 52.381 0.00 0.00 0.00 2.57
178 179 3.028130 TGTGATCCCATGTCGCTAGTAA 58.972 45.455 0.00 0.00 0.00 2.24
179 180 3.641436 TGTGATCCCATGTCGCTAGTAAT 59.359 43.478 0.00 0.00 0.00 1.89
180 181 4.100963 TGTGATCCCATGTCGCTAGTAATT 59.899 41.667 0.00 0.00 0.00 1.40
181 182 5.303333 TGTGATCCCATGTCGCTAGTAATTA 59.697 40.000 0.00 0.00 0.00 1.40
182 183 6.014584 TGTGATCCCATGTCGCTAGTAATTAT 60.015 38.462 0.00 0.00 0.00 1.28
183 184 6.874134 GTGATCCCATGTCGCTAGTAATTATT 59.126 38.462 0.00 0.00 0.00 1.40
185 186 7.387673 TGATCCCATGTCGCTAGTAATTATTTG 59.612 37.037 0.00 0.00 0.00 2.32
187 188 6.704493 TCCCATGTCGCTAGTAATTATTTGTC 59.296 38.462 0.00 0.00 0.00 3.18
188 189 6.073222 CCCATGTCGCTAGTAATTATTTGTCC 60.073 42.308 0.00 0.00 0.00 4.02
190 191 7.173218 CCATGTCGCTAGTAATTATTTGTCCAT 59.827 37.037 0.00 0.00 0.00 3.41
193 194 6.851330 GTCGCTAGTAATTATTTGTCCATTGC 59.149 38.462 0.00 0.00 0.00 3.56
194 195 6.765989 TCGCTAGTAATTATTTGTCCATTGCT 59.234 34.615 0.00 0.00 0.00 3.91
204 205 8.545229 TTATTTGTCCATTGCTTAATTGTTGG 57.455 30.769 0.00 0.00 0.00 3.77
206 207 6.656632 TTGTCCATTGCTTAATTGTTGGTA 57.343 33.333 0.00 0.00 0.00 3.25
207 208 6.656632 TGTCCATTGCTTAATTGTTGGTAA 57.343 33.333 0.00 0.00 0.00 2.85
209 210 7.319646 TGTCCATTGCTTAATTGTTGGTAATC 58.680 34.615 0.00 0.00 0.00 1.75
210 211 7.178274 TGTCCATTGCTTAATTGTTGGTAATCT 59.822 33.333 0.00 0.00 0.00 2.40
211 212 8.034804 GTCCATTGCTTAATTGTTGGTAATCTT 58.965 33.333 0.00 0.00 0.00 2.40
212 213 9.249053 TCCATTGCTTAATTGTTGGTAATCTTA 57.751 29.630 0.00 0.00 0.00 2.10
213 214 9.520204 CCATTGCTTAATTGTTGGTAATCTTAG 57.480 33.333 0.00 0.00 0.00 2.18
222 223 7.718272 TTGTTGGTAATCTTAGTACACACAC 57.282 36.000 0.00 0.00 0.00 3.82
223 224 5.921976 TGTTGGTAATCTTAGTACACACACG 59.078 40.000 0.00 0.00 0.00 4.49
224 225 5.063180 TGGTAATCTTAGTACACACACGG 57.937 43.478 0.00 0.00 0.00 4.94
226 227 5.419788 TGGTAATCTTAGTACACACACGGAT 59.580 40.000 0.00 0.00 0.00 4.18
227 228 5.747197 GGTAATCTTAGTACACACACGGATG 59.253 44.000 0.00 0.00 0.00 3.51
228 229 5.401531 AATCTTAGTACACACACGGATGT 57.598 39.130 0.00 0.00 40.80 3.06
231 232 6.330004 TCTTAGTACACACACGGATGTTTA 57.670 37.500 0.00 0.00 36.72 2.01
232 233 6.927416 TCTTAGTACACACACGGATGTTTAT 58.073 36.000 0.00 0.00 36.72 1.40
233 234 8.054152 TCTTAGTACACACACGGATGTTTATA 57.946 34.615 0.00 0.00 36.72 0.98
234 235 7.970061 TCTTAGTACACACACGGATGTTTATAC 59.030 37.037 0.00 0.00 36.72 1.47
235 236 6.276832 AGTACACACACGGATGTTTATACT 57.723 37.500 0.00 0.00 36.72 2.12
237 238 7.478322 AGTACACACACGGATGTTTATACTAG 58.522 38.462 0.00 0.00 36.72 2.57
238 239 6.276832 ACACACACGGATGTTTATACTAGT 57.723 37.500 0.00 0.00 36.72 2.57
239 240 7.395190 ACACACACGGATGTTTATACTAGTA 57.605 36.000 4.77 4.77 36.72 1.82
241 242 9.123902 ACACACACGGATGTTTATACTAGTATA 57.876 33.333 17.03 17.03 36.72 1.47
242 243 9.390795 CACACACGGATGTTTATACTAGTATAC 57.609 37.037 20.01 13.85 36.72 1.47
243 244 9.123902 ACACACGGATGTTTATACTAGTATACA 57.876 33.333 20.01 18.37 36.72 2.29
244 245 9.955208 CACACGGATGTTTATACTAGTATACAA 57.045 33.333 20.01 14.60 36.72 2.41
259 260 9.781633 ACTAGTATACAAAAATACCACACACAA 57.218 29.630 5.50 0.00 33.58 3.33
262 263 9.781633 AGTATACAAAAATACCACACACAACTA 57.218 29.630 5.50 0.00 33.58 2.24
267 268 9.127277 ACAAAAATACCACACACAACTATTAGT 57.873 29.630 0.00 0.00 0.00 2.24
275 276 7.495279 ACCACACACAACTATTAGTAAACGAAA 59.505 33.333 0.00 0.00 0.00 3.46
277 278 9.705471 CACACACAACTATTAGTAAACGAAAAA 57.295 29.630 0.00 0.00 0.00 1.94
278 279 9.706846 ACACACAACTATTAGTAAACGAAAAAC 57.293 29.630 0.00 0.00 0.00 2.43
279 280 9.925268 CACACAACTATTAGTAAACGAAAAACT 57.075 29.630 0.00 0.00 0.00 2.66
306 307 2.981898 ACACGGCCTAAGATTACCAAC 58.018 47.619 0.00 0.00 0.00 3.77
307 308 2.303600 ACACGGCCTAAGATTACCAACA 59.696 45.455 0.00 0.00 0.00 3.33
310 311 4.398044 CACGGCCTAAGATTACCAACAATT 59.602 41.667 0.00 0.00 0.00 2.32
313 314 6.317893 ACGGCCTAAGATTACCAACAATTAAG 59.682 38.462 0.00 0.00 0.00 1.85
314 315 6.504398 GGCCTAAGATTACCAACAATTAAGC 58.496 40.000 0.00 0.00 0.00 3.09
315 316 6.096282 GGCCTAAGATTACCAACAATTAAGCA 59.904 38.462 0.00 0.00 0.00 3.91
316 317 7.363443 GGCCTAAGATTACCAACAATTAAGCAA 60.363 37.037 0.00 0.00 0.00 3.91
317 318 8.032451 GCCTAAGATTACCAACAATTAAGCAAA 58.968 33.333 0.00 0.00 0.00 3.68
318 319 9.921637 CCTAAGATTACCAACAATTAAGCAAAA 57.078 29.630 0.00 0.00 0.00 2.44
322 323 8.720562 AGATTACCAACAATTAAGCAAAAATGC 58.279 29.630 0.00 0.00 0.00 3.56
324 325 9.717942 ATTACCAACAATTAAGCAAAAATGCTA 57.282 25.926 3.44 0.00 45.54 3.49
325 326 7.420184 ACCAACAATTAAGCAAAAATGCTAC 57.580 32.000 3.44 0.00 45.54 3.58
326 327 6.989169 ACCAACAATTAAGCAAAAATGCTACA 59.011 30.769 3.44 0.00 45.54 2.74
327 328 7.042119 ACCAACAATTAAGCAAAAATGCTACAC 60.042 33.333 3.44 0.00 45.54 2.90
328 329 7.042187 CCAACAATTAAGCAAAAATGCTACACA 60.042 33.333 3.44 0.00 45.54 3.72
329 330 7.406799 ACAATTAAGCAAAAATGCTACACAC 57.593 32.000 3.44 0.00 45.54 3.82
330 331 6.143758 ACAATTAAGCAAAAATGCTACACACG 59.856 34.615 3.44 0.00 45.54 4.49
331 332 2.704725 AGCAAAAATGCTACACACGG 57.295 45.000 0.67 0.00 44.28 4.94
332 333 2.226330 AGCAAAAATGCTACACACGGA 58.774 42.857 0.67 0.00 44.28 4.69
333 334 2.819608 AGCAAAAATGCTACACACGGAT 59.180 40.909 0.67 0.00 44.28 4.18
334 335 3.119849 AGCAAAAATGCTACACACGGATC 60.120 43.478 0.67 0.00 44.28 3.36
338 339 6.607689 CAAAAATGCTACACACGGATCTTTA 58.392 36.000 0.00 0.00 0.00 1.85
341 342 5.991328 ATGCTACACACGGATCTTTAATG 57.009 39.130 0.00 0.00 0.00 1.90
343 344 3.560068 GCTACACACGGATCTTTAATGGG 59.440 47.826 0.00 0.00 0.00 4.00
344 345 2.365582 ACACACGGATCTTTAATGGGC 58.634 47.619 0.00 0.00 0.00 5.36
346 347 2.355756 CACACGGATCTTTAATGGGCTG 59.644 50.000 0.00 0.00 0.00 4.85
347 348 1.334869 CACGGATCTTTAATGGGCTGC 59.665 52.381 0.00 0.00 0.00 5.25
348 349 1.064758 ACGGATCTTTAATGGGCTGCA 60.065 47.619 0.50 0.00 0.00 4.41
350 351 2.223572 CGGATCTTTAATGGGCTGCAAC 60.224 50.000 0.50 0.00 0.00 4.17
351 352 2.223572 GGATCTTTAATGGGCTGCAACG 60.224 50.000 0.50 0.00 0.00 4.10
352 353 1.173043 TCTTTAATGGGCTGCAACGG 58.827 50.000 0.50 0.00 0.00 4.44
353 354 0.173255 CTTTAATGGGCTGCAACGGG 59.827 55.000 0.50 0.00 0.00 5.28
354 355 1.882989 TTTAATGGGCTGCAACGGGC 61.883 55.000 0.50 0.00 45.13 6.13
363 364 4.759205 GCAACGGGCCCCTTCCAT 62.759 66.667 18.66 0.00 36.11 3.41
364 365 2.440247 CAACGGGCCCCTTCCATC 60.440 66.667 18.66 0.00 0.00 3.51
365 366 2.614013 AACGGGCCCCTTCCATCT 60.614 61.111 18.66 0.00 0.00 2.90
366 367 2.238701 AACGGGCCCCTTCCATCTT 61.239 57.895 18.66 0.00 0.00 2.40
367 368 0.917333 AACGGGCCCCTTCCATCTTA 60.917 55.000 18.66 0.00 0.00 2.10
368 369 1.148498 CGGGCCCCTTCCATCTTAC 59.852 63.158 18.66 0.00 0.00 2.34
369 370 1.345715 CGGGCCCCTTCCATCTTACT 61.346 60.000 18.66 0.00 0.00 2.24
370 371 1.815757 GGGCCCCTTCCATCTTACTA 58.184 55.000 12.23 0.00 0.00 1.82
371 372 1.420514 GGGCCCCTTCCATCTTACTAC 59.579 57.143 12.23 0.00 0.00 2.73
373 374 3.584294 GGCCCCTTCCATCTTACTACTA 58.416 50.000 0.00 0.00 0.00 1.82
374 375 3.971971 GGCCCCTTCCATCTTACTACTAA 59.028 47.826 0.00 0.00 0.00 2.24
375 376 4.411212 GGCCCCTTCCATCTTACTACTAAA 59.589 45.833 0.00 0.00 0.00 1.85
376 377 5.366460 GCCCCTTCCATCTTACTACTAAAC 58.634 45.833 0.00 0.00 0.00 2.01
378 379 6.685873 GCCCCTTCCATCTTACTACTAAACTC 60.686 46.154 0.00 0.00 0.00 3.01
379 380 6.183360 CCCCTTCCATCTTACTACTAAACTCC 60.183 46.154 0.00 0.00 0.00 3.85
380 381 6.183360 CCCTTCCATCTTACTACTAAACTCCC 60.183 46.154 0.00 0.00 0.00 4.30
381 382 6.183360 CCTTCCATCTTACTACTAAACTCCCC 60.183 46.154 0.00 0.00 0.00 4.81
382 383 5.214293 TCCATCTTACTACTAAACTCCCCC 58.786 45.833 0.00 0.00 0.00 5.40
403 404 5.301298 CCCCCTGATTTTCATTCATCTCTTC 59.699 44.000 0.00 0.00 0.00 2.87
404 405 6.127793 CCCCTGATTTTCATTCATCTCTTCT 58.872 40.000 0.00 0.00 0.00 2.85
405 406 6.606395 CCCCTGATTTTCATTCATCTCTTCTT 59.394 38.462 0.00 0.00 0.00 2.52
406 407 7.201803 CCCCTGATTTTCATTCATCTCTTCTTC 60.202 40.741 0.00 0.00 0.00 2.87
407 408 7.201803 CCCTGATTTTCATTCATCTCTTCTTCC 60.202 40.741 0.00 0.00 0.00 3.46
408 409 7.201803 CCTGATTTTCATTCATCTCTTCTTCCC 60.202 40.741 0.00 0.00 0.00 3.97
411 412 8.605325 ATTTTCATTCATCTCTTCTTCCCAAT 57.395 30.769 0.00 0.00 0.00 3.16
412 413 7.636150 TTTCATTCATCTCTTCTTCCCAATC 57.364 36.000 0.00 0.00 0.00 2.67
415 416 8.037723 TCATTCATCTCTTCTTCCCAATCATA 57.962 34.615 0.00 0.00 0.00 2.15
416 417 7.935755 TCATTCATCTCTTCTTCCCAATCATAC 59.064 37.037 0.00 0.00 0.00 2.39
417 418 6.179906 TCATCTCTTCTTCCCAATCATACC 57.820 41.667 0.00 0.00 0.00 2.73
418 419 5.907662 TCATCTCTTCTTCCCAATCATACCT 59.092 40.000 0.00 0.00 0.00 3.08
419 420 6.388100 TCATCTCTTCTTCCCAATCATACCTT 59.612 38.462 0.00 0.00 0.00 3.50
420 421 6.642733 TCTCTTCTTCCCAATCATACCTTT 57.357 37.500 0.00 0.00 0.00 3.11
422 423 5.755849 TCTTCTTCCCAATCATACCTTTCC 58.244 41.667 0.00 0.00 0.00 3.13
423 424 5.252863 TCTTCTTCCCAATCATACCTTTCCA 59.747 40.000 0.00 0.00 0.00 3.53
424 425 4.855340 TCTTCCCAATCATACCTTTCCAC 58.145 43.478 0.00 0.00 0.00 4.02
425 426 3.275617 TCCCAATCATACCTTTCCACG 57.724 47.619 0.00 0.00 0.00 4.94
426 427 2.574369 TCCCAATCATACCTTTCCACGT 59.426 45.455 0.00 0.00 0.00 4.49
427 428 2.943033 CCCAATCATACCTTTCCACGTC 59.057 50.000 0.00 0.00 0.00 4.34
429 430 3.623060 CCAATCATACCTTTCCACGTCAG 59.377 47.826 0.00 0.00 0.00 3.51
430 431 2.380084 TCATACCTTTCCACGTCAGC 57.620 50.000 0.00 0.00 0.00 4.26
431 432 1.621317 TCATACCTTTCCACGTCAGCA 59.379 47.619 0.00 0.00 0.00 4.41
432 433 1.732259 CATACCTTTCCACGTCAGCAC 59.268 52.381 0.00 0.00 0.00 4.40
441 442 4.957266 CGTCAGCACGTCCTGTAA 57.043 55.556 6.35 0.00 41.42 2.41
443 444 1.493772 CGTCAGCACGTCCTGTAAAA 58.506 50.000 6.35 0.00 41.42 1.52
444 445 1.455786 CGTCAGCACGTCCTGTAAAAG 59.544 52.381 6.35 0.00 41.42 2.27
446 447 2.475487 GTCAGCACGTCCTGTAAAAGTC 59.525 50.000 6.35 0.00 34.47 3.01
447 448 1.798813 CAGCACGTCCTGTAAAAGTCC 59.201 52.381 0.00 0.00 0.00 3.85
448 449 0.788391 GCACGTCCTGTAAAAGTCCG 59.212 55.000 0.00 0.00 0.00 4.79
450 451 1.790623 CACGTCCTGTAAAAGTCCGTG 59.209 52.381 0.00 0.00 39.88 4.94
451 452 1.682854 ACGTCCTGTAAAAGTCCGTGA 59.317 47.619 0.00 0.00 31.42 4.35
453 454 3.125316 CGTCCTGTAAAAGTCCGTGAAA 58.875 45.455 0.00 0.00 0.00 2.69
454 455 3.744426 CGTCCTGTAAAAGTCCGTGAAAT 59.256 43.478 0.00 0.00 0.00 2.17
455 456 4.212636 CGTCCTGTAAAAGTCCGTGAAATT 59.787 41.667 0.00 0.00 0.00 1.82
456 457 5.406175 CGTCCTGTAAAAGTCCGTGAAATTA 59.594 40.000 0.00 0.00 0.00 1.40
457 458 6.091713 CGTCCTGTAAAAGTCCGTGAAATTAT 59.908 38.462 0.00 0.00 0.00 1.28
458 459 7.360607 CGTCCTGTAAAAGTCCGTGAAATTATT 60.361 37.037 0.00 0.00 0.00 1.40
459 460 7.961283 GTCCTGTAAAAGTCCGTGAAATTATTC 59.039 37.037 0.00 0.00 36.04 1.75
460 461 7.120138 TCCTGTAAAAGTCCGTGAAATTATTCC 59.880 37.037 0.00 0.00 34.49 3.01
461 462 6.833839 TGTAAAAGTCCGTGAAATTATTCCG 58.166 36.000 0.00 0.00 34.49 4.30
462 463 5.952526 AAAAGTCCGTGAAATTATTCCGT 57.047 34.783 0.00 0.00 34.49 4.69
463 464 4.939509 AAGTCCGTGAAATTATTCCGTG 57.060 40.909 0.00 0.00 34.49 4.94
465 466 3.682858 AGTCCGTGAAATTATTCCGTGTG 59.317 43.478 0.00 0.00 34.49 3.82
467 468 4.626604 GTCCGTGAAATTATTCCGTGTGTA 59.373 41.667 0.00 0.00 34.49 2.90
468 469 4.865925 TCCGTGAAATTATTCCGTGTGTAG 59.134 41.667 0.00 0.00 34.49 2.74
470 471 5.005394 CCGTGAAATTATTCCGTGTGTAGAG 59.995 44.000 0.00 0.00 34.49 2.43
471 472 5.500290 CGTGAAATTATTCCGTGTGTAGAGC 60.500 44.000 0.00 0.00 34.49 4.09
473 474 5.935206 TGAAATTATTCCGTGTGTAGAGCAA 59.065 36.000 0.00 0.00 34.49 3.91
474 475 6.428465 TGAAATTATTCCGTGTGTAGAGCAAA 59.572 34.615 0.00 0.00 34.49 3.68
475 476 6.422776 AATTATTCCGTGTGTAGAGCAAAG 57.577 37.500 0.00 0.00 0.00 2.77
476 477 1.508632 TTCCGTGTGTAGAGCAAAGC 58.491 50.000 0.00 0.00 0.00 3.51
486 487 2.840974 GAGCAAAGCTCGGCTGTTA 58.159 52.632 15.94 0.00 45.85 2.41
487 488 1.156736 GAGCAAAGCTCGGCTGTTAA 58.843 50.000 15.94 0.00 45.85 2.01
488 489 0.875059 AGCAAAGCTCGGCTGTTAAC 59.125 50.000 10.94 0.00 39.62 2.01
489 490 0.109735 GCAAAGCTCGGCTGTTAACC 60.110 55.000 2.48 0.00 39.62 2.85
490 491 0.521735 CAAAGCTCGGCTGTTAACCC 59.478 55.000 2.48 0.00 39.62 4.11
491 492 0.608308 AAAGCTCGGCTGTTAACCCC 60.608 55.000 2.48 2.80 39.62 4.95
493 494 1.302993 GCTCGGCTGTTAACCCCAA 60.303 57.895 2.48 0.00 0.00 4.12
494 495 0.891904 GCTCGGCTGTTAACCCCAAA 60.892 55.000 2.48 0.00 0.00 3.28
495 496 1.611519 CTCGGCTGTTAACCCCAAAA 58.388 50.000 2.48 0.00 0.00 2.44
496 497 2.167662 CTCGGCTGTTAACCCCAAAAT 58.832 47.619 2.48 0.00 0.00 1.82
498 499 2.966516 TCGGCTGTTAACCCCAAAATTT 59.033 40.909 2.48 0.00 0.00 1.82
499 500 3.388350 TCGGCTGTTAACCCCAAAATTTT 59.612 39.130 2.48 0.00 0.00 1.82
500 501 3.496507 CGGCTGTTAACCCCAAAATTTTG 59.503 43.478 21.65 21.65 37.90 2.44
501 502 4.456535 GGCTGTTAACCCCAAAATTTTGT 58.543 39.130 25.25 12.29 36.45 2.83
502 503 4.884744 GGCTGTTAACCCCAAAATTTTGTT 59.115 37.500 25.25 16.98 36.45 2.83
504 505 6.017770 GGCTGTTAACCCCAAAATTTTGTTAC 60.018 38.462 25.25 13.46 36.45 2.50
505 506 6.539103 GCTGTTAACCCCAAAATTTTGTTACA 59.461 34.615 25.25 16.49 36.45 2.41
506 507 7.065923 GCTGTTAACCCCAAAATTTTGTTACAA 59.934 33.333 25.25 12.17 36.45 2.41
507 508 8.494016 TGTTAACCCCAAAATTTTGTTACAAG 57.506 30.769 25.25 11.60 36.45 3.16
509 510 9.597170 GTTAACCCCAAAATTTTGTTACAAGTA 57.403 29.630 25.25 8.72 36.45 2.24
511 512 8.669946 AACCCCAAAATTTTGTTACAAGTATG 57.330 30.769 25.25 9.15 36.45 2.39
512 513 7.797062 ACCCCAAAATTTTGTTACAAGTATGT 58.203 30.769 25.25 7.73 38.75 2.29
513 514 7.929245 ACCCCAAAATTTTGTTACAAGTATGTC 59.071 33.333 25.25 0.00 37.44 3.06
514 515 7.928706 CCCCAAAATTTTGTTACAAGTATGTCA 59.071 33.333 25.25 0.00 37.44 3.58
515 516 9.319143 CCCAAAATTTTGTTACAAGTATGTCAA 57.681 29.630 25.25 0.00 37.44 3.18
524 525 9.509855 TTGTTACAAGTATGTCAAAAACATCAC 57.490 29.630 0.00 0.00 45.78 3.06
526 527 9.169468 GTTACAAGTATGTCAAAAACATCACTG 57.831 33.333 0.00 0.00 45.78 3.66
527 528 6.738114 ACAAGTATGTCAAAAACATCACTGG 58.262 36.000 0.00 0.00 45.78 4.00
528 529 5.964958 AGTATGTCAAAAACATCACTGGG 57.035 39.130 0.00 0.00 45.78 4.45
529 530 5.630121 AGTATGTCAAAAACATCACTGGGA 58.370 37.500 0.00 0.00 45.78 4.37
532 533 5.261209 TGTCAAAAACATCACTGGGAAAG 57.739 39.130 0.00 0.00 31.20 2.62
533 534 4.051237 GTCAAAAACATCACTGGGAAAGC 58.949 43.478 0.00 0.00 0.00 3.51
534 535 3.703556 TCAAAAACATCACTGGGAAAGCA 59.296 39.130 0.00 0.00 0.00 3.91
535 536 3.733443 AAAACATCACTGGGAAAGCAC 57.267 42.857 0.00 0.00 0.00 4.40
537 538 0.773644 ACATCACTGGGAAAGCACCT 59.226 50.000 0.00 0.00 0.00 4.00
538 539 1.171308 CATCACTGGGAAAGCACCTG 58.829 55.000 0.00 0.00 0.00 4.00
539 540 0.038744 ATCACTGGGAAAGCACCTGG 59.961 55.000 0.00 0.00 0.00 4.45
541 542 0.178992 CACTGGGAAAGCACCTGGAA 60.179 55.000 0.00 0.00 0.00 3.53
542 543 0.779997 ACTGGGAAAGCACCTGGAAT 59.220 50.000 0.00 0.00 0.00 3.01
545 546 3.011708 ACTGGGAAAGCACCTGGAATATT 59.988 43.478 0.00 0.00 0.00 1.28
553 554 6.500684 AAGCACCTGGAATATTTATATGCG 57.499 37.500 0.00 0.00 0.00 4.73
557 558 5.943416 CACCTGGAATATTTATATGCGGGAA 59.057 40.000 0.00 0.00 0.00 3.97
566 567 9.912634 AATATTTATATGCGGGAATTTTGTGAG 57.087 29.630 0.00 0.00 0.00 3.51
572 573 1.550072 CGGGAATTTTGTGAGGCCATT 59.450 47.619 5.01 0.00 0.00 3.16
581 582 3.499737 GAGGCCATTGCGTGTCCG 61.500 66.667 5.01 0.00 38.85 4.79
658 662 2.867793 TTCCACCGCATCCATCACCG 62.868 60.000 0.00 0.00 0.00 4.94
671 675 0.976073 ATCACCGACCATCGTCCCTT 60.976 55.000 0.00 0.00 38.40 3.95
735 739 1.632018 CCATTCCCCGCACCCTCTTA 61.632 60.000 0.00 0.00 0.00 2.10
804 808 0.755327 AATAAAGCCACCGCCCATCC 60.755 55.000 0.00 0.00 34.57 3.51
820 836 3.516615 CCATCCAAGAAGAGAACTCGAC 58.483 50.000 0.00 0.00 34.09 4.20
902 918 1.394572 CAGACACACACACACACACTG 59.605 52.381 0.00 0.00 0.00 3.66
908 924 0.321564 ACACACACACACTGCACACT 60.322 50.000 0.00 0.00 0.00 3.55
909 925 1.066502 ACACACACACACTGCACACTA 60.067 47.619 0.00 0.00 0.00 2.74
910 926 1.327460 CACACACACACTGCACACTAC 59.673 52.381 0.00 0.00 0.00 2.73
911 927 1.066502 ACACACACACTGCACACTACA 60.067 47.619 0.00 0.00 0.00 2.74
912 928 1.327460 CACACACACTGCACACTACAC 59.673 52.381 0.00 0.00 0.00 2.90
913 929 1.066502 ACACACACTGCACACTACACA 60.067 47.619 0.00 0.00 0.00 3.72
914 930 1.327460 CACACACTGCACACTACACAC 59.673 52.381 0.00 0.00 0.00 3.82
915 931 0.576798 CACACTGCACACTACACACG 59.423 55.000 0.00 0.00 0.00 4.49
917 933 0.875908 CACTGCACACTACACACGCT 60.876 55.000 0.00 0.00 0.00 5.07
919 935 0.319040 CTGCACACTACACACGCTCT 60.319 55.000 0.00 0.00 0.00 4.09
921 937 0.039074 GCACACTACACACGCTCTCT 60.039 55.000 0.00 0.00 0.00 3.10
922 938 1.970447 CACACTACACACGCTCTCTC 58.030 55.000 0.00 0.00 0.00 3.20
923 939 1.537638 CACACTACACACGCTCTCTCT 59.462 52.381 0.00 0.00 0.00 3.10
924 940 1.807742 ACACTACACACGCTCTCTCTC 59.192 52.381 0.00 0.00 0.00 3.20
925 941 2.080693 CACTACACACGCTCTCTCTCT 58.919 52.381 0.00 0.00 0.00 3.10
927 943 2.027561 ACTACACACGCTCTCTCTCTCT 60.028 50.000 0.00 0.00 0.00 3.10
1005 1021 0.316841 GATCTCTCTCGACCATGGCC 59.683 60.000 13.04 0.00 0.00 5.36
1075 1097 4.214327 CGCCTCTTCTCGCCTCCC 62.214 72.222 0.00 0.00 0.00 4.30
1108 1130 2.571653 ACCAGCTCTGTTTACCATGCTA 59.428 45.455 0.00 0.00 33.34 3.49
1109 1131 3.201290 CCAGCTCTGTTTACCATGCTAG 58.799 50.000 0.00 0.00 33.34 3.42
1553 1637 4.260609 ATGCCGATGCCGATGCCT 62.261 61.111 0.00 0.00 38.22 4.75
1554 1638 2.786539 GATGCCGATGCCGATGCCTA 62.787 60.000 0.00 0.00 38.22 3.93
1555 1639 3.044305 GCCGATGCCGATGCCTAC 61.044 66.667 0.00 0.00 38.22 3.18
1556 1640 2.421314 CCGATGCCGATGCCTACA 59.579 61.111 0.00 0.00 38.22 2.74
1557 1641 1.956170 CCGATGCCGATGCCTACAC 60.956 63.158 0.00 0.00 38.22 2.90
1558 1642 1.068083 CGATGCCGATGCCTACACT 59.932 57.895 0.00 0.00 38.22 3.55
1680 1788 2.093075 AGGACATAGAGGACGTCGAGAA 60.093 50.000 9.92 0.00 0.00 2.87
1850 1988 6.258947 GGAGTAGAACAGAATAAATCACAGGC 59.741 42.308 0.00 0.00 0.00 4.85
1873 2011 4.258899 CGAAGCTATTCAGTAACGTTCACG 60.259 45.833 2.82 0.00 39.27 4.35
2039 2485 7.970384 TCTTTATTAAATACTGGCAGAACACG 58.030 34.615 23.66 0.00 0.00 4.49
2040 2486 6.671614 TTATTAAATACTGGCAGAACACGG 57.328 37.500 23.66 0.00 0.00 4.94
2041 2487 1.165270 AAATACTGGCAGAACACGGC 58.835 50.000 23.66 0.00 0.00 5.68
2042 2488 1.019278 AATACTGGCAGAACACGGCG 61.019 55.000 23.66 4.80 0.00 6.46
2058 2504 2.426588 CGCGTGCATTGCAACGAA 60.427 55.556 26.45 0.00 41.47 3.85
2059 2505 2.008168 CGCGTGCATTGCAACGAAA 61.008 52.632 26.45 0.00 41.47 3.46
2060 2506 1.768603 GCGTGCATTGCAACGAAAG 59.231 52.632 26.45 0.00 41.47 2.62
2061 2507 1.608093 GCGTGCATTGCAACGAAAGG 61.608 55.000 26.45 8.25 41.47 3.11
2062 2508 0.040514 CGTGCATTGCAACGAAAGGA 60.041 50.000 21.17 0.00 41.47 3.36
2063 2509 1.599171 CGTGCATTGCAACGAAAGGAA 60.599 47.619 21.17 0.00 41.47 3.36
2064 2510 2.468831 GTGCATTGCAACGAAAGGAAA 58.531 42.857 13.94 0.00 41.47 3.13
2065 2511 2.863137 GTGCATTGCAACGAAAGGAAAA 59.137 40.909 13.94 0.00 41.47 2.29
2066 2512 3.308323 GTGCATTGCAACGAAAGGAAAAA 59.692 39.130 13.94 0.00 41.47 1.94
2086 2532 4.741321 AAAAATTCATGATCGTGGCCAT 57.259 36.364 9.72 0.00 0.00 4.40
2087 2533 3.720949 AAATTCATGATCGTGGCCATG 57.279 42.857 19.62 19.62 40.97 3.66
2088 2534 2.643995 ATTCATGATCGTGGCCATGA 57.356 45.000 29.42 29.42 45.03 3.07
2089 2535 2.643995 TTCATGATCGTGGCCATGAT 57.356 45.000 35.57 35.57 45.70 2.45
2095 2541 2.353357 ATCGTGGCCATGATCACATT 57.647 45.000 31.09 12.37 31.79 2.71
2096 2542 2.127271 TCGTGGCCATGATCACATTT 57.873 45.000 24.15 0.00 34.15 2.32
2097 2543 2.445427 TCGTGGCCATGATCACATTTT 58.555 42.857 24.15 0.00 34.15 1.82
2098 2544 2.164017 TCGTGGCCATGATCACATTTTG 59.836 45.455 24.15 0.00 34.15 2.44
2099 2545 2.273557 GTGGCCATGATCACATTTTGC 58.726 47.619 9.72 0.00 34.15 3.68
2100 2546 1.207570 TGGCCATGATCACATTTTGCC 59.792 47.619 0.00 4.85 40.49 4.52
2101 2547 1.473788 GGCCATGATCACATTTTGCCC 60.474 52.381 0.00 0.00 37.24 5.36
2110 2556 3.006940 TCACATTTTGCCCGATACACTC 58.993 45.455 0.00 0.00 0.00 3.51
2123 2570 5.178797 CCGATACACTCCACTCTCATTTTT 58.821 41.667 0.00 0.00 0.00 1.94
2127 2574 4.780815 ACACTCCACTCTCATTTTTGTGA 58.219 39.130 0.00 0.00 32.72 3.58
2128 2575 4.818546 ACACTCCACTCTCATTTTTGTGAG 59.181 41.667 0.00 4.09 45.51 3.51
2138 2585 5.989249 CTCATTTTTGTGAGATCGTGAACA 58.011 37.500 0.00 0.00 46.77 3.18
2139 2586 6.370433 TCATTTTTGTGAGATCGTGAACAA 57.630 33.333 2.68 2.68 0.00 2.83
2148 2596 6.912051 TGTGAGATCGTGAACAATTTTGAAAG 59.088 34.615 0.00 0.00 0.00 2.62
2160 2608 9.853921 GAACAATTTTGAAAGTCATGAACATTC 57.146 29.630 0.00 3.25 36.38 2.67
2171 2619 7.572523 AGTCATGAACATTCTTTTCAACTCA 57.427 32.000 0.00 0.00 36.57 3.41
2172 2620 7.420800 AGTCATGAACATTCTTTTCAACTCAC 58.579 34.615 0.00 0.00 36.57 3.51
2173 2621 7.067372 AGTCATGAACATTCTTTTCAACTCACA 59.933 33.333 0.00 0.00 36.57 3.58
2188 2636 9.897744 TTTCAACTCACAAACATATCTGAAATC 57.102 29.630 0.00 0.00 0.00 2.17
2189 2637 8.620116 TCAACTCACAAACATATCTGAAATCA 57.380 30.769 0.00 0.00 0.00 2.57
2365 2813 6.942005 TCAAAAGGCAGACATTTCTAGAATCA 59.058 34.615 5.89 0.00 0.00 2.57
2367 2815 7.951347 AAAGGCAGACATTTCTAGAATCAAT 57.049 32.000 5.89 0.00 0.00 2.57
2371 2819 7.778853 AGGCAGACATTTCTAGAATCAATGAAT 59.221 33.333 18.31 6.94 33.02 2.57
2456 2914 9.613428 AAAATGCATGATCATCTTTTGAATCAT 57.387 25.926 4.86 0.00 38.03 2.45
2457 2915 9.613428 AAATGCATGATCATCTTTTGAATCATT 57.387 25.926 4.86 0.00 38.03 2.57
2502 2960 8.891671 AAACTACTCCGTATTTTGTAAGTCAA 57.108 30.769 0.00 0.00 0.00 3.18
2506 2964 7.653767 ACTCCGTATTTTGTAAGTCAAGAAG 57.346 36.000 0.00 0.00 37.35 2.85
2509 2967 7.439381 TCCGTATTTTGTAAGTCAAGAAGAGT 58.561 34.615 0.00 0.00 37.35 3.24
2627 3127 8.940768 TTTTCTGATTTTCCGAACATTTTTCT 57.059 26.923 0.00 0.00 0.00 2.52
2637 3137 8.425577 TTCCGAACATTTTTCTAAAAATTGCA 57.574 26.923 10.03 0.00 43.91 4.08
2638 3138 8.425577 TCCGAACATTTTTCTAAAAATTGCAA 57.574 26.923 0.00 0.00 43.91 4.08
2639 3139 8.883731 TCCGAACATTTTTCTAAAAATTGCAAA 58.116 25.926 1.71 0.00 43.91 3.68
2669 3169 9.504708 TTTTTGAATCCACAGCATTTATGAATT 57.495 25.926 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.971428 TAAGCTAGACGCGCCATGCC 62.971 60.000 5.73 0.00 45.59 4.40
12 13 0.941463 CCTAAGCTAGACGCGCCATG 60.941 60.000 5.73 0.00 45.59 3.66
13 14 1.364171 CCTAAGCTAGACGCGCCAT 59.636 57.895 5.73 0.00 45.59 4.40
15 16 2.658918 GCCTAAGCTAGACGCGCC 60.659 66.667 5.73 0.00 45.59 6.53
16 17 3.025176 CGCCTAAGCTAGACGCGC 61.025 66.667 5.73 0.00 45.59 6.86
17 18 3.025176 GCGCCTAAGCTAGACGCG 61.025 66.667 3.53 3.53 46.80 6.01
52 53 9.554724 CAAATGCAAGTACACGTAGATTTATTT 57.445 29.630 0.00 0.00 0.00 1.40
53 54 8.726988 ACAAATGCAAGTACACGTAGATTTATT 58.273 29.630 0.00 0.00 0.00 1.40
54 55 8.263940 ACAAATGCAAGTACACGTAGATTTAT 57.736 30.769 0.00 0.00 0.00 1.40
55 56 7.411049 CGACAAATGCAAGTACACGTAGATTTA 60.411 37.037 0.00 0.00 0.00 1.40
56 57 6.554334 ACAAATGCAAGTACACGTAGATTT 57.446 33.333 0.00 0.00 0.00 2.17
57 58 5.163992 CGACAAATGCAAGTACACGTAGATT 60.164 40.000 0.00 0.00 0.00 2.40
58 59 4.326278 CGACAAATGCAAGTACACGTAGAT 59.674 41.667 0.00 0.00 0.00 1.98
59 60 3.671459 CGACAAATGCAAGTACACGTAGA 59.329 43.478 0.00 0.00 0.00 2.59
61 62 3.640592 TCGACAAATGCAAGTACACGTA 58.359 40.909 0.00 0.00 0.00 3.57
62 63 2.475111 CTCGACAAATGCAAGTACACGT 59.525 45.455 0.00 0.00 0.00 4.49
63 64 2.729360 TCTCGACAAATGCAAGTACACG 59.271 45.455 0.00 0.00 0.00 4.49
64 65 3.423645 GCTCTCGACAAATGCAAGTACAC 60.424 47.826 0.00 0.00 0.00 2.90
65 66 2.736721 GCTCTCGACAAATGCAAGTACA 59.263 45.455 0.00 0.00 0.00 2.90
66 67 2.996621 AGCTCTCGACAAATGCAAGTAC 59.003 45.455 0.00 0.00 0.00 2.73
67 68 3.319137 AGCTCTCGACAAATGCAAGTA 57.681 42.857 0.00 0.00 0.00 2.24
69 70 3.486584 GAAAGCTCTCGACAAATGCAAG 58.513 45.455 0.00 0.00 0.00 4.01
70 71 2.226437 GGAAAGCTCTCGACAAATGCAA 59.774 45.455 0.00 0.00 0.00 4.08
71 72 1.806542 GGAAAGCTCTCGACAAATGCA 59.193 47.619 0.00 0.00 0.00 3.96
72 73 1.201965 CGGAAAGCTCTCGACAAATGC 60.202 52.381 0.00 0.00 0.00 3.56
73 74 2.337583 TCGGAAAGCTCTCGACAAATG 58.662 47.619 0.00 0.00 0.00 2.32
76 77 2.490509 TGTATCGGAAAGCTCTCGACAA 59.509 45.455 7.91 0.00 35.70 3.18
77 78 2.089201 TGTATCGGAAAGCTCTCGACA 58.911 47.619 7.91 2.20 35.70 4.35
78 79 2.541999 CCTGTATCGGAAAGCTCTCGAC 60.542 54.545 7.91 0.00 35.70 4.20
79 80 1.676529 CCTGTATCGGAAAGCTCTCGA 59.323 52.381 8.13 8.13 37.33 4.04
80 81 1.405821 ACCTGTATCGGAAAGCTCTCG 59.594 52.381 0.00 0.00 0.00 4.04
81 82 3.528597 AACCTGTATCGGAAAGCTCTC 57.471 47.619 0.00 0.00 0.00 3.20
83 84 3.335579 ACAAACCTGTATCGGAAAGCTC 58.664 45.455 0.00 0.00 32.54 4.09
85 86 3.125316 CAGACAAACCTGTATCGGAAAGC 59.875 47.826 0.00 0.00 35.30 3.51
86 87 4.566004 TCAGACAAACCTGTATCGGAAAG 58.434 43.478 0.00 0.00 35.30 2.62
87 88 4.610605 TCAGACAAACCTGTATCGGAAA 57.389 40.909 0.00 0.00 35.30 3.13
89 90 4.566004 CTTTCAGACAAACCTGTATCGGA 58.434 43.478 0.00 0.00 35.30 4.55
90 91 3.125316 GCTTTCAGACAAACCTGTATCGG 59.875 47.826 0.00 0.00 35.30 4.18
91 92 3.997021 AGCTTTCAGACAAACCTGTATCG 59.003 43.478 0.00 0.00 35.30 2.92
92 93 5.239525 ACAAGCTTTCAGACAAACCTGTATC 59.760 40.000 0.00 0.00 35.30 2.24
94 95 4.523083 ACAAGCTTTCAGACAAACCTGTA 58.477 39.130 0.00 0.00 35.30 2.74
96 97 3.629398 AGACAAGCTTTCAGACAAACCTG 59.371 43.478 0.00 0.00 35.55 4.00
97 98 3.629398 CAGACAAGCTTTCAGACAAACCT 59.371 43.478 0.00 0.00 0.00 3.50
98 99 3.627577 TCAGACAAGCTTTCAGACAAACC 59.372 43.478 0.00 0.00 0.00 3.27
99 100 4.787882 GCTCAGACAAGCTTTCAGACAAAC 60.788 45.833 0.00 0.00 39.27 2.93
100 101 3.313526 GCTCAGACAAGCTTTCAGACAAA 59.686 43.478 0.00 0.00 39.27 2.83
101 102 2.874701 GCTCAGACAAGCTTTCAGACAA 59.125 45.455 0.00 0.00 39.27 3.18
102 103 2.487934 GCTCAGACAAGCTTTCAGACA 58.512 47.619 0.00 0.00 39.27 3.41
103 104 1.458827 CGCTCAGACAAGCTTTCAGAC 59.541 52.381 0.00 0.00 40.23 3.51
104 105 1.341209 TCGCTCAGACAAGCTTTCAGA 59.659 47.619 0.00 0.19 40.23 3.27
105 106 1.788258 TCGCTCAGACAAGCTTTCAG 58.212 50.000 0.00 0.00 40.23 3.02
106 107 3.986970 TCGCTCAGACAAGCTTTCA 57.013 47.368 0.00 0.00 40.23 2.69
116 117 0.604511 TGTCGTAGGTGTCGCTCAGA 60.605 55.000 0.00 0.00 0.00 3.27
117 118 0.179187 CTGTCGTAGGTGTCGCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
118 119 0.887836 ACTGTCGTAGGTGTCGCTCA 60.888 55.000 0.00 0.00 0.00 4.26
121 122 1.154073 GGACTGTCGTAGGTGTCGC 60.154 63.158 1.07 0.00 0.00 5.19
122 123 0.809385 ATGGACTGTCGTAGGTGTCG 59.191 55.000 1.07 0.00 0.00 4.35
125 126 0.802222 CGCATGGACTGTCGTAGGTG 60.802 60.000 1.07 0.00 0.00 4.00
126 127 1.511305 CGCATGGACTGTCGTAGGT 59.489 57.895 1.07 0.00 0.00 3.08
128 129 2.224217 CGCGCATGGACTGTCGTAG 61.224 63.158 8.75 0.00 0.00 3.51
131 132 4.794439 TCCGCGCATGGACTGTCG 62.794 66.667 8.75 0.00 31.53 4.35
132 133 2.434185 TTCCGCGCATGGACTGTC 60.434 61.111 8.75 0.00 37.89 3.51
133 134 1.884075 TAGTTCCGCGCATGGACTGT 61.884 55.000 16.13 2.26 37.89 3.55
134 135 0.739462 TTAGTTCCGCGCATGGACTG 60.739 55.000 16.13 0.00 37.89 3.51
136 137 0.800012 TTTTAGTTCCGCGCATGGAC 59.200 50.000 8.75 2.09 37.89 4.02
138 139 0.802494 ACTTTTAGTTCCGCGCATGG 59.198 50.000 8.75 0.38 0.00 3.66
140 141 1.196808 CACACTTTTAGTTCCGCGCAT 59.803 47.619 8.75 0.00 0.00 4.73
144 145 2.418976 GGGATCACACTTTTAGTTCCGC 59.581 50.000 0.00 0.00 0.00 5.54
145 146 3.670625 TGGGATCACACTTTTAGTTCCG 58.329 45.455 0.00 0.00 0.00 4.30
146 147 5.010282 ACATGGGATCACACTTTTAGTTCC 58.990 41.667 0.00 0.00 0.00 3.62
147 148 5.163854 CGACATGGGATCACACTTTTAGTTC 60.164 44.000 0.00 0.00 0.00 3.01
148 149 4.695455 CGACATGGGATCACACTTTTAGTT 59.305 41.667 0.00 0.00 0.00 2.24
149 150 4.253685 CGACATGGGATCACACTTTTAGT 58.746 43.478 0.00 0.00 0.00 2.24
150 151 3.063997 GCGACATGGGATCACACTTTTAG 59.936 47.826 0.00 0.00 0.00 1.85
151 152 3.006940 GCGACATGGGATCACACTTTTA 58.993 45.455 0.00 0.00 0.00 1.52
152 153 1.812571 GCGACATGGGATCACACTTTT 59.187 47.619 0.00 0.00 0.00 2.27
153 154 1.003580 AGCGACATGGGATCACACTTT 59.996 47.619 0.00 0.00 0.00 2.66
154 155 0.615331 AGCGACATGGGATCACACTT 59.385 50.000 0.00 0.00 0.00 3.16
155 156 1.410517 CTAGCGACATGGGATCACACT 59.589 52.381 0.00 0.00 0.00 3.55
157 158 1.485124 ACTAGCGACATGGGATCACA 58.515 50.000 0.00 0.00 0.00 3.58
158 159 3.728076 TTACTAGCGACATGGGATCAC 57.272 47.619 0.00 0.00 0.00 3.06
160 161 7.387948 ACAAATAATTACTAGCGACATGGGATC 59.612 37.037 0.00 0.00 0.00 3.36
161 162 7.224297 ACAAATAATTACTAGCGACATGGGAT 58.776 34.615 0.00 0.00 0.00 3.85
162 163 6.588204 ACAAATAATTACTAGCGACATGGGA 58.412 36.000 0.00 0.00 0.00 4.37
163 164 6.073222 GGACAAATAATTACTAGCGACATGGG 60.073 42.308 0.00 0.00 0.00 4.00
164 165 6.481976 TGGACAAATAATTACTAGCGACATGG 59.518 38.462 0.00 0.00 0.00 3.66
166 167 8.559536 CAATGGACAAATAATTACTAGCGACAT 58.440 33.333 0.00 0.00 0.00 3.06
167 168 7.466725 GCAATGGACAAATAATTACTAGCGACA 60.467 37.037 0.00 0.00 0.00 4.35
168 169 6.851330 GCAATGGACAAATAATTACTAGCGAC 59.149 38.462 0.00 0.00 0.00 5.19
169 170 6.765989 AGCAATGGACAAATAATTACTAGCGA 59.234 34.615 0.00 0.00 0.00 4.93
170 171 6.959361 AGCAATGGACAAATAATTACTAGCG 58.041 36.000 0.00 0.00 0.00 4.26
178 179 9.165035 CCAACAATTAAGCAATGGACAAATAAT 57.835 29.630 0.00 0.00 0.00 1.28
179 180 8.153550 ACCAACAATTAAGCAATGGACAAATAA 58.846 29.630 7.03 0.00 0.00 1.40
180 181 7.675062 ACCAACAATTAAGCAATGGACAAATA 58.325 30.769 7.03 0.00 0.00 1.40
181 182 6.532826 ACCAACAATTAAGCAATGGACAAAT 58.467 32.000 7.03 0.00 0.00 2.32
182 183 5.923204 ACCAACAATTAAGCAATGGACAAA 58.077 33.333 7.03 0.00 0.00 2.83
183 184 5.543507 ACCAACAATTAAGCAATGGACAA 57.456 34.783 7.03 0.00 0.00 3.18
185 186 7.547227 AGATTACCAACAATTAAGCAATGGAC 58.453 34.615 7.03 0.00 0.00 4.02
187 188 9.520204 CTAAGATTACCAACAATTAAGCAATGG 57.480 33.333 0.00 0.00 0.00 3.16
197 198 7.117236 CGTGTGTGTACTAAGATTACCAACAAT 59.883 37.037 0.00 0.00 0.00 2.71
199 200 5.921976 CGTGTGTGTACTAAGATTACCAACA 59.078 40.000 0.00 0.00 0.00 3.33
200 201 5.346822 CCGTGTGTGTACTAAGATTACCAAC 59.653 44.000 0.00 0.00 0.00 3.77
201 202 5.243507 TCCGTGTGTGTACTAAGATTACCAA 59.756 40.000 0.00 0.00 0.00 3.67
202 203 4.766373 TCCGTGTGTGTACTAAGATTACCA 59.234 41.667 0.00 0.00 0.00 3.25
203 204 5.314923 TCCGTGTGTGTACTAAGATTACC 57.685 43.478 0.00 0.00 0.00 2.85
204 205 6.327934 ACATCCGTGTGTGTACTAAGATTAC 58.672 40.000 0.00 0.00 37.14 1.89
206 207 5.401531 ACATCCGTGTGTGTACTAAGATT 57.598 39.130 0.00 0.00 37.14 2.40
207 208 5.401531 AACATCCGTGTGTGTACTAAGAT 57.598 39.130 0.00 0.00 38.92 2.40
209 210 7.972277 AGTATAAACATCCGTGTGTGTACTAAG 59.028 37.037 6.43 0.00 44.16 2.18
210 211 7.829725 AGTATAAACATCCGTGTGTGTACTAA 58.170 34.615 6.43 0.00 44.16 2.24
211 212 7.395190 AGTATAAACATCCGTGTGTGTACTA 57.605 36.000 6.43 0.00 44.16 1.82
212 213 6.276832 AGTATAAACATCCGTGTGTGTACT 57.723 37.500 3.27 3.27 42.38 2.73
213 214 7.253422 ACTAGTATAAACATCCGTGTGTGTAC 58.747 38.462 0.00 0.00 39.28 2.90
214 215 7.395190 ACTAGTATAAACATCCGTGTGTGTA 57.605 36.000 0.00 0.00 38.92 2.90
215 216 6.276832 ACTAGTATAAACATCCGTGTGTGT 57.723 37.500 0.00 0.00 38.92 3.72
233 234 9.781633 TTGTGTGTGGTATTTTTGTATACTAGT 57.218 29.630 0.00 0.00 32.70 2.57
235 236 9.781633 AGTTGTGTGTGGTATTTTTGTATACTA 57.218 29.630 4.17 0.00 32.70 1.82
241 242 9.127277 ACTAATAGTTGTGTGTGGTATTTTTGT 57.873 29.630 0.00 0.00 0.00 2.83
248 249 7.656412 TCGTTTACTAATAGTTGTGTGTGGTA 58.344 34.615 0.00 0.00 0.00 3.25
249 250 6.514947 TCGTTTACTAATAGTTGTGTGTGGT 58.485 36.000 0.00 0.00 0.00 4.16
251 252 9.705471 TTTTTCGTTTACTAATAGTTGTGTGTG 57.295 29.630 0.00 0.00 0.00 3.82
252 253 9.706846 GTTTTTCGTTTACTAATAGTTGTGTGT 57.293 29.630 0.00 0.00 0.00 3.72
253 254 9.925268 AGTTTTTCGTTTACTAATAGTTGTGTG 57.075 29.630 0.00 0.00 0.00 3.82
255 256 9.298113 CGAGTTTTTCGTTTACTAATAGTTGTG 57.702 33.333 0.00 0.00 44.27 3.33
281 282 5.846203 TGGTAATCTTAGGCCGTGTAATAC 58.154 41.667 0.00 0.00 0.00 1.89
283 284 5.121105 GTTGGTAATCTTAGGCCGTGTAAT 58.879 41.667 0.00 0.00 0.00 1.89
284 285 4.020396 TGTTGGTAATCTTAGGCCGTGTAA 60.020 41.667 0.00 0.00 0.00 2.41
285 286 3.514706 TGTTGGTAATCTTAGGCCGTGTA 59.485 43.478 0.00 0.00 0.00 2.90
288 289 3.706600 TTGTTGGTAATCTTAGGCCGT 57.293 42.857 0.00 0.00 0.00 5.68
290 291 6.096282 TGCTTAATTGTTGGTAATCTTAGGCC 59.904 38.462 0.00 0.00 0.00 5.19
291 292 7.095695 TGCTTAATTGTTGGTAATCTTAGGC 57.904 36.000 0.00 0.00 0.00 3.93
292 293 9.921637 TTTTGCTTAATTGTTGGTAATCTTAGG 57.078 29.630 0.00 0.00 0.00 2.69
297 298 8.720562 AGCATTTTTGCTTAATTGTTGGTAATC 58.279 29.630 0.00 0.00 43.52 1.75
300 301 8.144478 TGTAGCATTTTTGCTTAATTGTTGGTA 58.856 29.630 5.72 0.00 43.52 3.25
301 302 6.989169 TGTAGCATTTTTGCTTAATTGTTGGT 59.011 30.769 5.72 0.00 43.52 3.67
302 303 7.042187 TGTGTAGCATTTTTGCTTAATTGTTGG 60.042 33.333 5.72 0.00 43.52 3.77
303 304 7.793427 GTGTGTAGCATTTTTGCTTAATTGTTG 59.207 33.333 5.72 0.00 43.52 3.33
306 307 6.399880 CCGTGTGTAGCATTTTTGCTTAATTG 60.400 38.462 5.72 0.00 43.52 2.32
307 308 5.633182 CCGTGTGTAGCATTTTTGCTTAATT 59.367 36.000 5.72 0.00 43.52 1.40
310 311 3.815962 TCCGTGTGTAGCATTTTTGCTTA 59.184 39.130 5.72 0.00 43.52 3.09
313 314 2.697431 TCCGTGTGTAGCATTTTTGC 57.303 45.000 0.00 0.00 0.00 3.68
314 315 4.685169 AGATCCGTGTGTAGCATTTTTG 57.315 40.909 0.00 0.00 0.00 2.44
315 316 5.705609 AAAGATCCGTGTGTAGCATTTTT 57.294 34.783 0.00 0.00 0.00 1.94
316 317 6.811253 TTAAAGATCCGTGTGTAGCATTTT 57.189 33.333 0.00 0.00 0.00 1.82
317 318 6.183360 CCATTAAAGATCCGTGTGTAGCATTT 60.183 38.462 0.00 0.00 0.00 2.32
318 319 5.296780 CCATTAAAGATCCGTGTGTAGCATT 59.703 40.000 0.00 0.00 0.00 3.56
319 320 4.816385 CCATTAAAGATCCGTGTGTAGCAT 59.184 41.667 0.00 0.00 0.00 3.79
320 321 4.188462 CCATTAAAGATCCGTGTGTAGCA 58.812 43.478 0.00 0.00 0.00 3.49
321 322 3.560068 CCCATTAAAGATCCGTGTGTAGC 59.440 47.826 0.00 0.00 0.00 3.58
322 323 3.560068 GCCCATTAAAGATCCGTGTGTAG 59.440 47.826 0.00 0.00 0.00 2.74
323 324 3.199071 AGCCCATTAAAGATCCGTGTGTA 59.801 43.478 0.00 0.00 0.00 2.90
324 325 2.026262 AGCCCATTAAAGATCCGTGTGT 60.026 45.455 0.00 0.00 0.00 3.72
325 326 2.355756 CAGCCCATTAAAGATCCGTGTG 59.644 50.000 0.00 0.00 0.00 3.82
326 327 2.643551 CAGCCCATTAAAGATCCGTGT 58.356 47.619 0.00 0.00 0.00 4.49
327 328 1.334869 GCAGCCCATTAAAGATCCGTG 59.665 52.381 0.00 0.00 0.00 4.94
328 329 1.064758 TGCAGCCCATTAAAGATCCGT 60.065 47.619 0.00 0.00 0.00 4.69
329 330 1.679139 TGCAGCCCATTAAAGATCCG 58.321 50.000 0.00 0.00 0.00 4.18
330 331 2.223572 CGTTGCAGCCCATTAAAGATCC 60.224 50.000 0.00 0.00 0.00 3.36
331 332 2.223572 CCGTTGCAGCCCATTAAAGATC 60.224 50.000 0.00 0.00 0.00 2.75
332 333 1.750778 CCGTTGCAGCCCATTAAAGAT 59.249 47.619 0.00 0.00 0.00 2.40
333 334 1.173043 CCGTTGCAGCCCATTAAAGA 58.827 50.000 0.00 0.00 0.00 2.52
334 335 0.173255 CCCGTTGCAGCCCATTAAAG 59.827 55.000 0.00 0.00 0.00 1.85
346 347 4.759205 ATGGAAGGGGCCCGTTGC 62.759 66.667 34.35 34.35 40.16 4.17
347 348 2.440247 GATGGAAGGGGCCCGTTG 60.440 66.667 33.71 0.00 0.00 4.10
348 349 0.917333 TAAGATGGAAGGGGCCCGTT 60.917 55.000 29.50 29.50 0.00 4.44
350 351 1.148498 GTAAGATGGAAGGGGCCCG 59.852 63.158 18.95 0.00 0.00 6.13
351 352 1.420514 GTAGTAAGATGGAAGGGGCCC 59.579 57.143 17.12 17.12 0.00 5.80
352 353 2.409570 AGTAGTAAGATGGAAGGGGCC 58.590 52.381 0.00 0.00 0.00 5.80
353 354 5.130643 AGTTTAGTAGTAAGATGGAAGGGGC 59.869 44.000 0.00 0.00 0.00 5.80
354 355 6.183360 GGAGTTTAGTAGTAAGATGGAAGGGG 60.183 46.154 0.00 0.00 0.00 4.79
355 356 6.183360 GGGAGTTTAGTAGTAAGATGGAAGGG 60.183 46.154 0.00 0.00 0.00 3.95
356 357 6.183360 GGGGAGTTTAGTAGTAAGATGGAAGG 60.183 46.154 0.00 0.00 0.00 3.46
357 358 6.183360 GGGGGAGTTTAGTAGTAAGATGGAAG 60.183 46.154 0.00 0.00 0.00 3.46
358 359 5.664457 GGGGGAGTTTAGTAGTAAGATGGAA 59.336 44.000 0.00 0.00 0.00 3.53
360 361 5.548181 GGGGGAGTTTAGTAGTAAGATGG 57.452 47.826 0.00 0.00 0.00 3.51
379 380 4.801164 AGAGATGAATGAAAATCAGGGGG 58.199 43.478 0.00 0.00 0.00 5.40
380 381 6.127793 AGAAGAGATGAATGAAAATCAGGGG 58.872 40.000 0.00 0.00 0.00 4.79
381 382 7.201803 GGAAGAAGAGATGAATGAAAATCAGGG 60.202 40.741 0.00 0.00 0.00 4.45
382 383 7.201803 GGGAAGAAGAGATGAATGAAAATCAGG 60.202 40.741 0.00 0.00 0.00 3.86
384 385 7.177184 TGGGAAGAAGAGATGAATGAAAATCA 58.823 34.615 0.00 0.00 0.00 2.57
385 386 7.636150 TGGGAAGAAGAGATGAATGAAAATC 57.364 36.000 0.00 0.00 0.00 2.17
386 387 8.605325 ATTGGGAAGAAGAGATGAATGAAAAT 57.395 30.769 0.00 0.00 0.00 1.82
387 388 7.670979 TGATTGGGAAGAAGAGATGAATGAAAA 59.329 33.333 0.00 0.00 0.00 2.29
388 389 7.177184 TGATTGGGAAGAAGAGATGAATGAAA 58.823 34.615 0.00 0.00 0.00 2.69
390 391 6.317663 TGATTGGGAAGAAGAGATGAATGA 57.682 37.500 0.00 0.00 0.00 2.57
391 392 7.174599 GGTATGATTGGGAAGAAGAGATGAATG 59.825 40.741 0.00 0.00 0.00 2.67
392 393 7.073470 AGGTATGATTGGGAAGAAGAGATGAAT 59.927 37.037 0.00 0.00 0.00 2.57
395 396 6.185114 AGGTATGATTGGGAAGAAGAGATG 57.815 41.667 0.00 0.00 0.00 2.90
396 397 6.838401 AAGGTATGATTGGGAAGAAGAGAT 57.162 37.500 0.00 0.00 0.00 2.75
397 398 6.353082 GGAAAGGTATGATTGGGAAGAAGAGA 60.353 42.308 0.00 0.00 0.00 3.10
400 401 5.358160 GTGGAAAGGTATGATTGGGAAGAAG 59.642 44.000 0.00 0.00 0.00 2.85
403 404 3.627577 CGTGGAAAGGTATGATTGGGAAG 59.372 47.826 0.00 0.00 0.00 3.46
404 405 3.009695 ACGTGGAAAGGTATGATTGGGAA 59.990 43.478 0.00 0.00 0.00 3.97
405 406 2.574369 ACGTGGAAAGGTATGATTGGGA 59.426 45.455 0.00 0.00 0.00 4.37
406 407 2.943033 GACGTGGAAAGGTATGATTGGG 59.057 50.000 0.00 0.00 0.00 4.12
407 408 3.605634 TGACGTGGAAAGGTATGATTGG 58.394 45.455 0.00 0.00 0.00 3.16
408 409 3.063997 GCTGACGTGGAAAGGTATGATTG 59.936 47.826 0.00 0.00 0.00 2.67
411 412 1.621317 TGCTGACGTGGAAAGGTATGA 59.379 47.619 0.00 0.00 0.00 2.15
412 413 1.732259 GTGCTGACGTGGAAAGGTATG 59.268 52.381 0.00 0.00 0.00 2.39
415 416 1.594293 CGTGCTGACGTGGAAAGGT 60.594 57.895 0.00 0.00 40.91 3.50
416 417 3.244105 CGTGCTGACGTGGAAAGG 58.756 61.111 0.00 0.00 40.91 3.11
425 426 2.475487 GACTTTTACAGGACGTGCTGAC 59.525 50.000 38.92 17.85 0.00 3.51
426 427 2.547218 GGACTTTTACAGGACGTGCTGA 60.547 50.000 38.92 21.69 0.00 4.26
427 428 1.798813 GGACTTTTACAGGACGTGCTG 59.201 52.381 32.28 32.28 0.00 4.41
429 430 0.788391 CGGACTTTTACAGGACGTGC 59.212 55.000 0.00 0.00 0.00 5.34
430 431 1.790623 CACGGACTTTTACAGGACGTG 59.209 52.381 0.00 0.00 44.71 4.49
431 432 1.682854 TCACGGACTTTTACAGGACGT 59.317 47.619 0.00 0.00 38.90 4.34
432 433 2.427232 TCACGGACTTTTACAGGACG 57.573 50.000 0.00 0.00 33.39 4.79
433 434 5.684550 AATTTCACGGACTTTTACAGGAC 57.315 39.130 0.00 0.00 0.00 3.85
435 436 7.248437 GGAATAATTTCACGGACTTTTACAGG 58.752 38.462 0.00 0.00 33.23 4.00
436 437 6.959311 CGGAATAATTTCACGGACTTTTACAG 59.041 38.462 0.00 0.00 33.23 2.74
437 438 6.427547 ACGGAATAATTTCACGGACTTTTACA 59.572 34.615 0.00 0.00 32.94 2.41
438 439 6.739550 CACGGAATAATTTCACGGACTTTTAC 59.260 38.462 0.00 0.00 32.94 2.01
439 440 6.427547 ACACGGAATAATTTCACGGACTTTTA 59.572 34.615 0.00 0.00 32.94 1.52
441 442 4.758165 ACACGGAATAATTTCACGGACTTT 59.242 37.500 0.00 0.00 32.94 2.66
443 444 3.682858 CACACGGAATAATTTCACGGACT 59.317 43.478 0.00 0.00 32.94 3.85
444 445 3.434299 ACACACGGAATAATTTCACGGAC 59.566 43.478 0.00 0.00 32.94 4.79
446 447 4.865925 TCTACACACGGAATAATTTCACGG 59.134 41.667 0.00 0.00 32.94 4.94
447 448 5.500290 GCTCTACACACGGAATAATTTCACG 60.500 44.000 0.00 0.00 33.23 4.35
448 449 5.350365 TGCTCTACACACGGAATAATTTCAC 59.650 40.000 0.00 0.00 33.23 3.18
450 451 6.417191 TTGCTCTACACACGGAATAATTTC 57.583 37.500 0.00 0.00 0.00 2.17
451 452 6.622896 GCTTTGCTCTACACACGGAATAATTT 60.623 38.462 0.00 0.00 0.00 1.82
453 454 4.332819 GCTTTGCTCTACACACGGAATAAT 59.667 41.667 0.00 0.00 0.00 1.28
454 455 3.682858 GCTTTGCTCTACACACGGAATAA 59.317 43.478 0.00 0.00 0.00 1.40
455 456 3.056107 AGCTTTGCTCTACACACGGAATA 60.056 43.478 0.00 0.00 30.62 1.75
456 457 2.076863 GCTTTGCTCTACACACGGAAT 58.923 47.619 0.00 0.00 0.00 3.01
457 458 1.070134 AGCTTTGCTCTACACACGGAA 59.930 47.619 0.00 0.00 30.62 4.30
458 459 0.679505 AGCTTTGCTCTACACACGGA 59.320 50.000 0.00 0.00 30.62 4.69
459 460 3.217242 AGCTTTGCTCTACACACGG 57.783 52.632 0.00 0.00 30.62 4.94
470 471 0.109735 GGTTAACAGCCGAGCTTTGC 60.110 55.000 8.10 0.42 36.40 3.68
471 472 0.521735 GGGTTAACAGCCGAGCTTTG 59.478 55.000 8.10 0.00 36.40 2.77
473 474 1.002502 GGGGTTAACAGCCGAGCTT 60.003 57.895 8.10 0.00 42.13 3.74
474 475 1.774894 TTGGGGTTAACAGCCGAGCT 61.775 55.000 8.10 0.00 42.13 4.09
475 476 0.891904 TTTGGGGTTAACAGCCGAGC 60.892 55.000 8.10 0.00 42.13 5.03
476 477 1.611519 TTTTGGGGTTAACAGCCGAG 58.388 50.000 8.10 0.00 42.13 4.63
478 479 3.394674 AAATTTTGGGGTTAACAGCCG 57.605 42.857 8.10 0.00 42.13 5.52
479 480 4.456535 ACAAAATTTTGGGGTTAACAGCC 58.543 39.130 29.37 0.00 42.34 4.85
480 481 6.539103 TGTAACAAAATTTTGGGGTTAACAGC 59.461 34.615 29.37 11.38 42.34 4.40
481 482 8.494016 TTGTAACAAAATTTTGGGGTTAACAG 57.506 30.769 29.37 6.04 42.34 3.16
483 484 8.495361 ACTTGTAACAAAATTTTGGGGTTAAC 57.505 30.769 29.37 18.51 42.34 2.01
486 487 8.268605 ACATACTTGTAACAAAATTTTGGGGTT 58.731 29.630 29.37 19.03 37.07 4.11
487 488 7.797062 ACATACTTGTAACAAAATTTTGGGGT 58.203 30.769 29.37 18.44 37.07 4.95
488 489 7.928706 TGACATACTTGTAACAAAATTTTGGGG 59.071 33.333 29.37 16.31 38.14 4.96
489 490 8.879342 TGACATACTTGTAACAAAATTTTGGG 57.121 30.769 29.37 16.04 38.14 4.12
510 511 4.441356 GCTTTCCCAGTGATGTTTTTGACA 60.441 41.667 0.00 0.00 43.71 3.58
511 512 4.051237 GCTTTCCCAGTGATGTTTTTGAC 58.949 43.478 0.00 0.00 0.00 3.18
512 513 3.703556 TGCTTTCCCAGTGATGTTTTTGA 59.296 39.130 0.00 0.00 0.00 2.69
513 514 3.803778 GTGCTTTCCCAGTGATGTTTTTG 59.196 43.478 0.00 0.00 0.00 2.44
514 515 3.181466 GGTGCTTTCCCAGTGATGTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
515 516 2.365293 GGTGCTTTCCCAGTGATGTTTT 59.635 45.455 0.00 0.00 0.00 2.43
517 518 1.145738 AGGTGCTTTCCCAGTGATGTT 59.854 47.619 0.00 0.00 0.00 2.71
518 519 0.773644 AGGTGCTTTCCCAGTGATGT 59.226 50.000 0.00 0.00 0.00 3.06
519 520 1.171308 CAGGTGCTTTCCCAGTGATG 58.829 55.000 0.00 0.00 0.00 3.07
521 522 1.059584 TCCAGGTGCTTTCCCAGTGA 61.060 55.000 0.00 0.00 0.00 3.41
522 523 0.178992 TTCCAGGTGCTTTCCCAGTG 60.179 55.000 0.00 0.00 0.00 3.66
524 525 2.806945 TATTCCAGGTGCTTTCCCAG 57.193 50.000 0.00 0.00 0.00 4.45
526 527 7.577616 GCATATAAATATTCCAGGTGCTTTCCC 60.578 40.741 0.00 0.00 0.00 3.97
527 528 7.315890 GCATATAAATATTCCAGGTGCTTTCC 58.684 38.462 0.00 0.00 0.00 3.13
528 529 7.023575 CGCATATAAATATTCCAGGTGCTTTC 58.976 38.462 0.00 0.00 0.00 2.62
529 530 6.071952 CCGCATATAAATATTCCAGGTGCTTT 60.072 38.462 0.00 0.00 0.00 3.51
532 533 4.096382 CCCGCATATAAATATTCCAGGTGC 59.904 45.833 0.00 0.00 0.00 5.01
533 534 5.496556 TCCCGCATATAAATATTCCAGGTG 58.503 41.667 0.00 0.00 0.00 4.00
534 535 5.772393 TCCCGCATATAAATATTCCAGGT 57.228 39.130 0.00 0.00 0.00 4.00
535 536 7.645058 AATTCCCGCATATAAATATTCCAGG 57.355 36.000 0.00 0.00 0.00 4.45
537 538 8.865090 ACAAAATTCCCGCATATAAATATTCCA 58.135 29.630 0.00 0.00 0.00 3.53
538 539 9.139174 CACAAAATTCCCGCATATAAATATTCC 57.861 33.333 0.00 0.00 0.00 3.01
539 540 9.906660 TCACAAAATTCCCGCATATAAATATTC 57.093 29.630 0.00 0.00 0.00 1.75
541 542 8.522830 CCTCACAAAATTCCCGCATATAAATAT 58.477 33.333 0.00 0.00 0.00 1.28
542 543 7.523052 GCCTCACAAAATTCCCGCATATAAATA 60.523 37.037 0.00 0.00 0.00 1.40
545 546 4.037446 GCCTCACAAAATTCCCGCATATAA 59.963 41.667 0.00 0.00 0.00 0.98
553 554 2.936553 GCAATGGCCTCACAAAATTCCC 60.937 50.000 3.32 0.00 0.00 3.97
557 558 0.968405 ACGCAATGGCCTCACAAAAT 59.032 45.000 3.32 0.00 36.38 1.82
581 582 2.674084 CGCCCTTTCCGTCGGAAAC 61.674 63.158 30.87 21.42 45.42 2.78
658 662 1.687297 GGAGGGAAGGGACGATGGTC 61.687 65.000 0.00 0.00 42.66 4.02
671 675 2.089116 TTGACGAGACAGGGGAGGGA 62.089 60.000 0.00 0.00 0.00 4.20
735 739 3.233980 TGCAGGACGAGCAGTGGT 61.234 61.111 0.00 0.00 37.02 4.16
764 768 4.785453 GAGTTGCTGCCCCCGAGG 62.785 72.222 0.00 0.00 39.47 4.63
771 775 4.142182 TGGCTTTATTAATGAGTTGCTGCC 60.142 41.667 0.00 0.00 36.38 4.85
776 780 4.351192 GCGGTGGCTTTATTAATGAGTTG 58.649 43.478 0.00 0.00 35.83 3.16
804 808 3.924918 TGAGGTCGAGTTCTCTTCTTG 57.075 47.619 10.44 0.00 0.00 3.02
820 836 0.248843 GGTGGAGCTGAGACTTGAGG 59.751 60.000 0.00 0.00 0.00 3.86
902 918 0.039074 AGAGAGCGTGTGTAGTGTGC 60.039 55.000 0.00 0.00 0.00 4.57
908 924 2.235155 AGAGAGAGAGAGAGCGTGTGTA 59.765 50.000 0.00 0.00 0.00 2.90
909 925 1.003118 AGAGAGAGAGAGAGCGTGTGT 59.997 52.381 0.00 0.00 0.00 3.72
910 926 1.665679 GAGAGAGAGAGAGAGCGTGTG 59.334 57.143 0.00 0.00 0.00 3.82
911 927 1.555075 AGAGAGAGAGAGAGAGCGTGT 59.445 52.381 0.00 0.00 0.00 4.49
912 928 2.159043 AGAGAGAGAGAGAGAGAGCGTG 60.159 54.545 0.00 0.00 0.00 5.34
913 929 2.111384 AGAGAGAGAGAGAGAGAGCGT 58.889 52.381 0.00 0.00 0.00 5.07
914 930 2.477825 CAGAGAGAGAGAGAGAGAGCG 58.522 57.143 0.00 0.00 0.00 5.03
915 931 2.158842 AGCAGAGAGAGAGAGAGAGAGC 60.159 54.545 0.00 0.00 0.00 4.09
917 933 3.370846 CCAAGCAGAGAGAGAGAGAGAGA 60.371 52.174 0.00 0.00 0.00 3.10
919 935 2.945440 GCCAAGCAGAGAGAGAGAGAGA 60.945 54.545 0.00 0.00 0.00 3.10
921 937 1.473258 GCCAAGCAGAGAGAGAGAGA 58.527 55.000 0.00 0.00 0.00 3.10
922 938 0.101040 CGCCAAGCAGAGAGAGAGAG 59.899 60.000 0.00 0.00 0.00 3.20
923 939 0.322906 TCGCCAAGCAGAGAGAGAGA 60.323 55.000 0.00 0.00 0.00 3.10
924 940 0.746063 ATCGCCAAGCAGAGAGAGAG 59.254 55.000 0.00 0.00 0.00 3.20
925 941 0.743688 GATCGCCAAGCAGAGAGAGA 59.256 55.000 0.00 0.00 0.00 3.10
927 943 1.135915 GAAGATCGCCAAGCAGAGAGA 59.864 52.381 0.00 0.00 0.00 3.10
977 993 1.441849 GAGAGAGATCGATGCGGCG 60.442 63.158 0.54 0.51 0.00 6.46
1051 1073 2.490685 GAGAAGAGGCGTCGTCCC 59.509 66.667 16.95 3.55 31.98 4.46
1094 1116 4.216257 ACAACAAGCTAGCATGGTAAACAG 59.784 41.667 22.78 7.70 0.00 3.16
1108 1130 4.141937 TGACTGAGAGTTGTACAACAAGCT 60.142 41.667 33.93 27.08 43.47 3.74
1109 1131 4.119862 TGACTGAGAGTTGTACAACAAGC 58.880 43.478 33.93 23.69 43.47 4.01
1170 1221 0.247460 CGAGGAGTGGTTCATGCTGA 59.753 55.000 0.00 0.00 0.00 4.26
1549 1633 1.752198 GTGGGTGTCAGTGTAGGCA 59.248 57.895 0.00 0.00 0.00 4.75
1553 1637 2.738480 GCCGTGGGTGTCAGTGTA 59.262 61.111 0.00 0.00 0.00 2.90
1554 1638 4.602259 CGCCGTGGGTGTCAGTGT 62.602 66.667 0.00 0.00 0.00 3.55
1666 1774 2.047443 GGGCTTCTCGACGTCCTCT 61.047 63.158 10.58 0.00 0.00 3.69
1691 1799 3.846180 GGCATTGCCCATGTCGAT 58.154 55.556 17.28 0.00 44.06 3.59
1850 1988 4.258899 CGTGAACGTTACTGAATAGCTTCG 60.259 45.833 0.00 0.00 32.53 3.79
1873 2011 4.575236 GGGAGTAAATAGGTAAGCAAGCAC 59.425 45.833 0.00 0.00 0.00 4.40
1982 2197 3.857052 ACTAATTTGGCGTTCGAGATGA 58.143 40.909 0.00 0.00 0.00 2.92
2041 2487 1.922381 CTTTCGTTGCAATGCACGCG 61.922 55.000 20.21 20.21 38.71 6.01
2042 2488 1.608093 CCTTTCGTTGCAATGCACGC 61.608 55.000 19.71 10.92 38.71 5.34
2043 2489 0.040514 TCCTTTCGTTGCAATGCACG 60.041 50.000 7.72 15.06 38.71 5.34
2044 2490 2.132740 TTCCTTTCGTTGCAATGCAC 57.867 45.000 7.72 2.39 38.71 4.57
2045 2491 2.879002 TTTCCTTTCGTTGCAATGCA 57.121 40.000 14.04 2.72 36.47 3.96
2065 2511 4.160065 TCATGGCCACGATCATGAATTTTT 59.840 37.500 8.16 0.00 44.41 1.94
2066 2512 3.700539 TCATGGCCACGATCATGAATTTT 59.299 39.130 8.16 0.00 44.41 1.82
2067 2513 3.289836 TCATGGCCACGATCATGAATTT 58.710 40.909 8.16 0.00 44.41 1.82
2068 2514 2.934887 TCATGGCCACGATCATGAATT 58.065 42.857 8.16 0.00 44.41 2.17
2069 2515 2.643995 TCATGGCCACGATCATGAAT 57.356 45.000 8.16 0.00 44.41 2.57
2072 2518 1.886886 TGATCATGGCCACGATCATG 58.113 50.000 34.49 17.16 42.31 3.07
2074 2520 0.540923 TGTGATCATGGCCACGATCA 59.459 50.000 34.49 34.49 44.37 2.92
2075 2521 1.888215 ATGTGATCATGGCCACGATC 58.112 50.000 30.36 30.36 38.81 3.69
2076 2522 2.353357 AATGTGATCATGGCCACGAT 57.647 45.000 15.49 15.49 36.15 3.73
2077 2523 2.127271 AAATGTGATCATGGCCACGA 57.873 45.000 8.16 5.36 36.15 4.35
2078 2524 2.532235 CAAAATGTGATCATGGCCACG 58.468 47.619 8.16 0.00 36.15 4.94
2079 2525 2.273557 GCAAAATGTGATCATGGCCAC 58.726 47.619 8.16 0.00 34.19 5.01
2080 2526 1.207570 GGCAAAATGTGATCATGGCCA 59.792 47.619 8.56 8.56 41.72 5.36
2081 2527 1.473788 GGGCAAAATGTGATCATGGCC 60.474 52.381 19.46 19.46 41.55 5.36
2082 2528 1.803625 CGGGCAAAATGTGATCATGGC 60.804 52.381 10.48 10.48 34.19 4.40
2083 2529 1.750206 TCGGGCAAAATGTGATCATGG 59.250 47.619 0.00 0.00 34.19 3.66
2084 2530 3.720949 ATCGGGCAAAATGTGATCATG 57.279 42.857 0.00 0.00 34.19 3.07
2085 2531 4.036734 GTGTATCGGGCAAAATGTGATCAT 59.963 41.667 0.00 0.00 35.59 2.45
2086 2532 3.376859 GTGTATCGGGCAAAATGTGATCA 59.623 43.478 0.00 0.00 0.00 2.92
2087 2533 3.627577 AGTGTATCGGGCAAAATGTGATC 59.372 43.478 0.00 0.00 0.00 2.92
2088 2534 3.620488 AGTGTATCGGGCAAAATGTGAT 58.380 40.909 0.00 0.00 0.00 3.06
2089 2535 3.006940 GAGTGTATCGGGCAAAATGTGA 58.993 45.455 0.00 0.00 0.00 3.58
2090 2536 2.097466 GGAGTGTATCGGGCAAAATGTG 59.903 50.000 0.00 0.00 0.00 3.21
2091 2537 2.290641 TGGAGTGTATCGGGCAAAATGT 60.291 45.455 0.00 0.00 0.00 2.71
2092 2538 2.097466 GTGGAGTGTATCGGGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
2093 2539 2.026262 AGTGGAGTGTATCGGGCAAAAT 60.026 45.455 0.00 0.00 0.00 1.82
2094 2540 1.349688 AGTGGAGTGTATCGGGCAAAA 59.650 47.619 0.00 0.00 0.00 2.44
2095 2541 0.981183 AGTGGAGTGTATCGGGCAAA 59.019 50.000 0.00 0.00 0.00 3.68
2096 2542 0.535335 GAGTGGAGTGTATCGGGCAA 59.465 55.000 0.00 0.00 0.00 4.52
2097 2543 0.324368 AGAGTGGAGTGTATCGGGCA 60.324 55.000 0.00 0.00 0.00 5.36
2098 2544 0.386113 GAGAGTGGAGTGTATCGGGC 59.614 60.000 0.00 0.00 0.00 6.13
2099 2545 1.763968 TGAGAGTGGAGTGTATCGGG 58.236 55.000 0.00 0.00 0.00 5.14
2100 2546 4.392921 AAATGAGAGTGGAGTGTATCGG 57.607 45.455 0.00 0.00 0.00 4.18
2101 2547 5.639506 ACAAAAATGAGAGTGGAGTGTATCG 59.360 40.000 0.00 0.00 0.00 2.92
2123 2570 6.370433 TTCAAAATTGTTCACGATCTCACA 57.630 33.333 0.00 0.00 0.00 3.58
2127 2574 7.026631 TGACTTTCAAAATTGTTCACGATCT 57.973 32.000 0.00 0.00 0.00 2.75
2128 2575 7.591057 TCATGACTTTCAAAATTGTTCACGATC 59.409 33.333 0.00 0.00 0.00 3.69
2132 2579 8.183830 TGTTCATGACTTTCAAAATTGTTCAC 57.816 30.769 0.00 0.00 0.00 3.18
2136 2583 9.603921 AAGAATGTTCATGACTTTCAAAATTGT 57.396 25.926 17.73 0.50 42.10 2.71
2148 2596 7.195646 TGTGAGTTGAAAAGAATGTTCATGAC 58.804 34.615 0.00 0.00 42.98 3.06
2160 2608 9.734620 TTTCAGATATGTTTGTGAGTTGAAAAG 57.265 29.630 0.00 0.00 31.42 2.27
2165 2613 9.285770 CATGATTTCAGATATGTTTGTGAGTTG 57.714 33.333 0.00 0.00 0.00 3.16
2306 2754 9.567848 TGTTTCTAAAGATGTTCACAAGTTTTC 57.432 29.630 0.00 0.00 0.00 2.29
2327 2775 7.064490 TGTCTGCCTTTTGAAGAAAAATGTTTC 59.936 33.333 0.00 0.00 43.05 2.78
2341 2789 7.149569 TGATTCTAGAAATGTCTGCCTTTTG 57.850 36.000 9.71 0.00 35.12 2.44
2344 2792 7.114754 TCATTGATTCTAGAAATGTCTGCCTT 58.885 34.615 9.71 0.00 35.12 4.35
2429 2887 8.878769 TGATTCAAAAGATGATCATGCATTTTG 58.121 29.630 26.28 26.28 38.03 2.44
2430 2888 9.613428 ATGATTCAAAAGATGATCATGCATTTT 57.387 25.926 14.30 13.67 38.03 1.82
2483 2941 7.599245 ACTCTTCTTGACTTACAAAATACGGAG 59.401 37.037 0.00 0.00 38.08 4.63
2484 2942 7.439381 ACTCTTCTTGACTTACAAAATACGGA 58.561 34.615 0.00 0.00 38.08 4.69
2485 2943 7.653767 ACTCTTCTTGACTTACAAAATACGG 57.346 36.000 0.00 0.00 38.08 4.02
2486 2944 9.931210 AAAACTCTTCTTGACTTACAAAATACG 57.069 29.630 0.00 0.00 38.08 3.06
2592 3071 8.116651 TCGGAAAATCAGAAAATGTTTATGGA 57.883 30.769 0.00 0.00 0.00 3.41
2593 3072 8.647226 GTTCGGAAAATCAGAAAATGTTTATGG 58.353 33.333 0.00 0.00 32.70 2.74
2597 3076 8.661352 AATGTTCGGAAAATCAGAAAATGTTT 57.339 26.923 0.00 0.00 30.65 2.83
2613 3092 8.425577 TTGCAATTTTTAGAAAAATGTTCGGA 57.574 26.923 12.48 2.96 45.16 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.