Multiple sequence alignment - TraesCS7D01G035700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G035700 chr7D 100.000 3733 0 0 1 3733 18260228 18256496 0.000000e+00 6894.0
1 TraesCS7D01G035700 chr7D 88.561 813 90 1 1919 2728 617377548 617376736 0.000000e+00 983.0
2 TraesCS7D01G035700 chr7D 88.272 810 95 0 1919 2728 617197897 617198706 0.000000e+00 970.0
3 TraesCS7D01G035700 chr7D 89.149 470 42 3 1178 1647 617197440 617197900 8.990000e-161 577.0
4 TraesCS7D01G035700 chr7D 87.104 473 50 5 1176 1647 617378007 617377545 3.300000e-145 525.0
5 TraesCS7D01G035700 chr7D 87.532 385 26 7 942 1326 18282893 18282531 3.450000e-115 425.0
6 TraesCS7D01G035700 chr7D 88.136 59 7 0 83 141 617200887 617200945 1.860000e-08 71.3
7 TraesCS7D01G035700 chr7A 95.270 1501 67 4 425 1923 18776734 18775236 0.000000e+00 2375.0
8 TraesCS7D01G035700 chr7A 96.733 704 22 1 3030 3733 18770313 18769611 0.000000e+00 1171.0
9 TraesCS7D01G035700 chr7A 95.378 714 23 2 2320 3033 18771594 18770891 0.000000e+00 1127.0
10 TraesCS7D01G035700 chr7A 88.561 813 90 1 1919 2728 711171949 711171137 0.000000e+00 983.0
11 TraesCS7D01G035700 chr7A 88.192 813 90 4 1919 2728 710958695 710957886 0.000000e+00 965.0
12 TraesCS7D01G035700 chr7A 88.085 470 47 3 1178 1647 710959152 710958692 1.960000e-152 549.0
13 TraesCS7D01G035700 chr7A 86.809 470 53 3 1178 1647 711172406 711171946 1.990000e-142 516.0
14 TraesCS7D01G035700 chr7A 88.315 445 15 17 1 428 18777772 18777348 2.000000e-137 499.0
15 TraesCS7D01G035700 chr7A 82.751 458 51 14 871 1326 18781516 18781085 2.100000e-102 383.0
16 TraesCS7D01G035700 chr7A 100.000 35 0 0 92 126 710899963 710899929 8.650000e-07 65.8
17 TraesCS7D01G035700 chr7A 100.000 35 0 0 92 126 710952531 710952497 8.650000e-07 65.8
18 TraesCS7D01G035700 chrUn 90.087 1029 71 10 2020 3037 50992527 50993535 0.000000e+00 1306.0
19 TraesCS7D01G035700 chrUn 88.163 811 93 1 1919 2729 241849339 241848532 0.000000e+00 963.0
20 TraesCS7D01G035700 chrUn 87.654 648 80 0 1000 1647 241849983 241849336 0.000000e+00 754.0
21 TraesCS7D01G035700 chrUn 84.946 558 50 6 425 954 427577336 427577887 5.490000e-148 534.0
22 TraesCS7D01G035700 chrUn 84.353 556 53 6 427 954 460760832 460760283 7.150000e-142 514.0
23 TraesCS7D01G035700 chrUn 93.548 310 16 4 889 1195 460760296 460759988 3.400000e-125 459.0
24 TraesCS7D01G035700 chrUn 88.957 326 18 7 3224 3549 456136896 456137203 1.630000e-103 387.0
25 TraesCS7D01G035700 chrUn 88.449 303 17 7 3224 3526 419599325 419599041 2.130000e-92 350.0
26 TraesCS7D01G035700 chrUn 94.737 190 10 0 3544 3733 456137567 456137756 2.820000e-76 296.0
27 TraesCS7D01G035700 chrUn 87.931 232 20 7 26 252 193256379 193256151 2.210000e-67 267.0
28 TraesCS7D01G035700 chrUn 87.500 232 21 7 26 252 342093399 342093171 1.030000e-65 261.0
29 TraesCS7D01G035700 chrUn 87.500 232 21 7 26 252 344189207 344188979 1.030000e-65 261.0
30 TraesCS7D01G035700 chrUn 80.548 365 41 14 871 1231 263050806 263051144 1.720000e-63 254.0
31 TraesCS7D01G035700 chrUn 88.942 208 16 6 26 229 397952758 397952962 2.230000e-62 250.0
32 TraesCS7D01G035700 chrUn 90.000 190 19 0 41 230 358677833 358678022 2.880000e-61 246.0
33 TraesCS7D01G035700 chrUn 94.000 150 9 0 3033 3182 50993779 50993928 1.040000e-55 228.0
34 TraesCS7D01G035700 chr7B 89.053 813 86 2 1919 2728 711476154 711476966 0.000000e+00 1005.0
35 TraesCS7D01G035700 chr7B 87.670 811 95 4 1919 2728 711488877 711488071 0.000000e+00 939.0
36 TraesCS7D01G035700 chr7B 88.372 473 44 5 1176 1647 711489336 711488874 3.260000e-155 558.0
37 TraesCS7D01G035700 chr7B 86.864 472 49 7 1178 1647 711475697 711476157 1.990000e-142 516.0
38 TraesCS7D01G035700 chr4A 87.453 805 98 3 1919 2723 599612614 599613415 0.000000e+00 924.0
39 TraesCS7D01G035700 chr4A 87.963 648 78 0 1000 1647 599611970 599612617 0.000000e+00 765.0
40 TraesCS7D01G035700 chr6D 80.296 203 33 6 2751 2949 121167672 121167871 3.000000e-31 147.0
41 TraesCS7D01G035700 chr6B 79.897 194 29 9 2751 2938 213237201 213237390 2.340000e-27 134.0
42 TraesCS7D01G035700 chr5B 81.879 149 23 2 718 866 486287172 486287316 5.060000e-24 122.0
43 TraesCS7D01G035700 chr5B 87.500 96 9 2 2811 2903 655285134 655285039 1.420000e-19 108.0
44 TraesCS7D01G035700 chr5B 77.778 180 28 12 2731 2903 527760579 527760405 2.370000e-17 100.0
45 TraesCS7D01G035700 chr1A 84.685 111 16 1 423 532 50197099 50196989 3.940000e-20 110.0
46 TraesCS7D01G035700 chr1A 84.545 110 16 1 424 532 50131853 50131744 1.420000e-19 108.0
47 TraesCS7D01G035700 chr1A 84.545 110 16 1 424 532 50257557 50257448 1.420000e-19 108.0
48 TraesCS7D01G035700 chr1A 82.727 110 18 1 424 532 50614694 50614585 3.070000e-16 97.1
49 TraesCS7D01G035700 chr3A 84.906 106 14 2 2844 2948 489199451 489199347 5.100000e-19 106.0
50 TraesCS7D01G035700 chr5D 83.636 110 16 2 425 532 405335569 405335678 6.600000e-18 102.0
51 TraesCS7D01G035700 chr2B 86.316 95 9 3 2811 2901 438744061 438743967 2.370000e-17 100.0
52 TraesCS7D01G035700 chr2B 80.833 120 19 4 2841 2957 18809173 18809055 1.430000e-14 91.6
53 TraesCS7D01G035700 chr1D 82.727 110 18 1 424 532 50974111 50974002 3.070000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G035700 chr7D 18256496 18260228 3732 True 6894.000000 6894 100.0000 1 3733 1 chr7D.!!$R1 3732
1 TraesCS7D01G035700 chr7D 617376736 617378007 1271 True 754.000000 983 87.8325 1176 2728 2 chr7D.!!$R3 1552
2 TraesCS7D01G035700 chr7D 617197440 617200945 3505 False 539.433333 970 88.5190 83 2728 3 chr7D.!!$F1 2645
3 TraesCS7D01G035700 chr7A 18769611 18781516 11905 True 1111.000000 2375 91.6894 1 3733 5 chr7A.!!$R3 3732
4 TraesCS7D01G035700 chr7A 710957886 710959152 1266 True 757.000000 965 88.1385 1178 2728 2 chr7A.!!$R4 1550
5 TraesCS7D01G035700 chr7A 711171137 711172406 1269 True 749.500000 983 87.6850 1178 2728 2 chr7A.!!$R5 1550
6 TraesCS7D01G035700 chrUn 241848532 241849983 1451 True 858.500000 963 87.9085 1000 2729 2 chrUn.!!$R5 1729
7 TraesCS7D01G035700 chrUn 50992527 50993928 1401 False 767.000000 1306 92.0435 2020 3182 2 chrUn.!!$F5 1162
8 TraesCS7D01G035700 chrUn 427577336 427577887 551 False 534.000000 534 84.9460 425 954 1 chrUn.!!$F4 529
9 TraesCS7D01G035700 chrUn 460759988 460760832 844 True 486.500000 514 88.9505 427 1195 2 chrUn.!!$R6 768
10 TraesCS7D01G035700 chrUn 456136896 456137756 860 False 341.500000 387 91.8470 3224 3733 2 chrUn.!!$F6 509
11 TraesCS7D01G035700 chr7B 711475697 711476966 1269 False 760.500000 1005 87.9585 1178 2728 2 chr7B.!!$F1 1550
12 TraesCS7D01G035700 chr7B 711488071 711489336 1265 True 748.500000 939 88.0210 1176 2728 2 chr7B.!!$R1 1552
13 TraesCS7D01G035700 chr4A 599611970 599613415 1445 False 844.500000 924 87.7080 1000 2723 2 chr4A.!!$F1 1723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 3903 0.105964 ACCGCTGACTACAAGTGCAA 59.894 50.0 0.0 0.0 0.00 4.08 F
160 3905 0.164647 CGCTGACTACAAGTGCAAGC 59.835 55.0 0.0 0.0 0.00 4.01 F
985 5445 0.445436 CAGCATGAGCCTCAACGTTC 59.555 55.0 0.0 0.0 43.56 3.95 F
1209 5670 0.806102 CCGTGTACCTCATGCTTCGG 60.806 60.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 5989 0.032678 CTGCAGTTGAGGACGAGTGT 59.967 55.000 5.25 0.0 34.33 3.55 R
1530 5991 1.005630 GCTGCAGTTGAGGACGAGT 60.006 57.895 16.64 0.0 0.00 4.18 R
2192 6654 1.305381 CCCTTGGTCGTCCTCCTCT 60.305 63.158 0.00 0.0 34.23 3.69 R
2991 11632 3.305398 AGGTTTCTCACGACATCTCAC 57.695 47.619 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 3857 2.418368 ACCCATCAATTCGCTGCTAA 57.582 45.000 0.00 0.00 0.00 3.09
129 3874 5.735354 GCTGCTAACCAGAATCATCAATTGG 60.735 44.000 5.42 0.00 44.64 3.16
131 3876 5.951148 TGCTAACCAGAATCATCAATTGGAA 59.049 36.000 5.42 0.00 33.19 3.53
135 3880 5.713025 ACCAGAATCATCAATTGGAAAACG 58.287 37.500 5.42 0.00 33.19 3.60
145 3890 1.231958 TTGGAAAACGCCTACCGCTG 61.232 55.000 0.00 0.00 41.76 5.18
146 3891 1.375013 GGAAAACGCCTACCGCTGA 60.375 57.895 0.00 0.00 41.76 4.26
147 3892 1.632948 GGAAAACGCCTACCGCTGAC 61.633 60.000 0.00 0.00 41.76 3.51
148 3893 0.669625 GAAAACGCCTACCGCTGACT 60.670 55.000 0.00 0.00 41.76 3.41
149 3894 0.604578 AAAACGCCTACCGCTGACTA 59.395 50.000 0.00 0.00 41.76 2.59
150 3895 0.108945 AAACGCCTACCGCTGACTAC 60.109 55.000 0.00 0.00 41.76 2.73
151 3896 1.246056 AACGCCTACCGCTGACTACA 61.246 55.000 0.00 0.00 41.76 2.74
152 3897 1.246056 ACGCCTACCGCTGACTACAA 61.246 55.000 0.00 0.00 41.76 2.41
153 3898 0.525668 CGCCTACCGCTGACTACAAG 60.526 60.000 0.00 0.00 34.21 3.16
154 3899 0.531200 GCCTACCGCTGACTACAAGT 59.469 55.000 0.00 0.00 0.00 3.16
155 3900 1.736032 GCCTACCGCTGACTACAAGTG 60.736 57.143 0.00 0.00 0.00 3.16
156 3901 1.630148 CTACCGCTGACTACAAGTGC 58.370 55.000 0.00 0.00 0.00 4.40
157 3902 0.963225 TACCGCTGACTACAAGTGCA 59.037 50.000 0.00 0.00 0.00 4.57
158 3903 0.105964 ACCGCTGACTACAAGTGCAA 59.894 50.000 0.00 0.00 0.00 4.08
159 3904 0.792640 CCGCTGACTACAAGTGCAAG 59.207 55.000 0.00 0.00 0.00 4.01
160 3905 0.164647 CGCTGACTACAAGTGCAAGC 59.835 55.000 0.00 0.00 0.00 4.01
161 3906 1.229428 GCTGACTACAAGTGCAAGCA 58.771 50.000 0.00 0.00 0.00 3.91
162 3907 1.069636 GCTGACTACAAGTGCAAGCAC 60.070 52.381 16.97 16.97 46.50 4.40
189 3934 6.040247 GGCTAAATAGTGCCCAATTGTTTAC 58.960 40.000 4.43 0.20 43.11 2.01
190 3935 6.350612 GGCTAAATAGTGCCCAATTGTTTACA 60.351 38.462 4.43 0.00 43.11 2.41
200 3945 5.508825 GCCCAATTGTTTACAATGTGACTGA 60.509 40.000 8.74 0.00 45.06 3.41
321 4078 8.030106 GTCTAGATAATAGCAAAAGCGGACTAT 58.970 37.037 0.00 0.00 0.00 2.12
373 4134 7.039784 TGCCTTGTTCATTAATTAAGCAGAAGT 60.040 33.333 3.94 0.00 0.00 3.01
374 4135 7.274250 GCCTTGTTCATTAATTAAGCAGAAGTG 59.726 37.037 3.94 0.00 0.00 3.16
392 4154 7.702348 GCAGAAGTGAATTACCCATTAATTGAC 59.298 37.037 0.00 0.00 41.89 3.18
562 4962 2.464865 GCAGATGTAGGTCTAGCAACG 58.535 52.381 0.00 0.00 0.00 4.10
610 5010 3.821033 GCTTTTTAGTGAAGAGAGCCCAA 59.179 43.478 0.00 0.00 0.00 4.12
627 5027 0.606401 CAAGTGCCAACTCACCGGAT 60.606 55.000 9.46 0.00 37.68 4.18
654 5054 1.132817 ACCTAGTCACCTGTGGGAACT 60.133 52.381 0.00 0.00 36.60 3.01
662 5062 1.207791 CCTGTGGGAACTATCTGGCT 58.792 55.000 0.00 0.00 33.58 4.75
761 5168 2.081462 GTGGCGCCATATATAACCACC 58.919 52.381 35.23 11.31 41.34 4.61
792 5199 3.401033 CAAGTGAGTCCACATGTACCA 57.599 47.619 0.00 0.00 45.54 3.25
834 5241 2.885266 TCCTCACACATCGTCTATAGCC 59.115 50.000 0.00 0.00 0.00 3.93
845 5252 0.904649 TCTATAGCCCGGGCATGATG 59.095 55.000 45.13 29.09 44.88 3.07
869 5276 4.003788 ACCGGAGCCACAACCTCG 62.004 66.667 9.46 0.00 0.00 4.63
893 5301 6.420903 CGCTATATAAGTGCAAGCTCTAAACA 59.579 38.462 3.07 0.00 0.00 2.83
940 5400 3.421844 ACCCCTCATACAAGAAAAGCAC 58.578 45.455 0.00 0.00 0.00 4.40
985 5445 0.445436 CAGCATGAGCCTCAACGTTC 59.555 55.000 0.00 0.00 43.56 3.95
1209 5670 0.806102 CCGTGTACCTCATGCTTCGG 60.806 60.000 0.00 0.00 0.00 4.30
1328 5789 3.785189 ATACGCCCACCATCGACGC 62.785 63.158 0.00 0.00 0.00 5.19
1446 5907 3.573772 CTGCACCCTCGAGAACGCA 62.574 63.158 15.71 16.98 39.58 5.24
1451 5912 4.753877 CCTCGAGAACGCACGCGA 62.754 66.667 19.66 7.80 42.83 5.87
1528 5989 3.716195 CCCCAGACACCATCGGCA 61.716 66.667 0.00 0.00 0.00 5.69
1530 5991 2.347114 CCAGACACCATCGGCACA 59.653 61.111 0.00 0.00 0.00 4.57
1747 6208 3.120321 TCGGCAGTACACACAAATTCT 57.880 42.857 0.00 0.00 0.00 2.40
1880 6342 6.016276 AGTGAAATTTAGTGATTTCCGCAACT 60.016 34.615 7.61 2.90 42.59 3.16
1891 6353 6.751888 GTGATTTCCGCAACTGCTAAAATATT 59.248 34.615 9.68 0.00 39.32 1.28
2129 6591 3.394635 GAATGCCCGGTTCCGCCTA 62.395 63.158 0.00 0.00 34.25 3.93
2192 6654 1.301087 CTACCGGTGCGTGTTCCAA 60.301 57.895 19.93 0.00 0.00 3.53
2445 10202 1.511305 CGTGCCGTCATAGACCAGT 59.489 57.895 0.00 0.00 0.00 4.00
2977 11615 3.186119 AGTGCAAAAACCAACACAATCG 58.814 40.909 0.00 0.00 35.47 3.34
2991 11632 5.403897 ACACAATCGCCTAAATAATCACG 57.596 39.130 0.00 0.00 0.00 4.35
3220 12554 4.177026 ACAACGACTAGATTGCATCTGAC 58.823 43.478 0.00 1.39 40.51 3.51
3572 13430 8.668510 AAATGAGTATGGCAGTGAATAGTTAG 57.331 34.615 0.00 0.00 0.00 2.34
3642 13500 2.663063 CGACTTCCTTTCAAAGCTTCGC 60.663 50.000 0.00 0.00 0.00 4.70
3694 13552 7.507672 ACGAATGATGAAACGTAAAGAGTAG 57.492 36.000 0.00 0.00 37.22 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.763097 TTGGTTAGCAGCGAATTGATG 57.237 42.857 0.00 0.00 36.94 3.07
3 4 4.782019 TTTTGGTTAGCAGCGAATTGAT 57.218 36.364 0.00 0.00 0.00 2.57
4 5 4.217334 TGATTTTGGTTAGCAGCGAATTGA 59.783 37.500 0.00 0.00 0.00 2.57
112 3857 5.713025 CGTTTTCCAATTGATGATTCTGGT 58.287 37.500 7.12 0.00 0.00 4.00
135 3880 0.531200 ACTTGTAGTCAGCGGTAGGC 59.469 55.000 0.00 0.00 44.05 3.93
145 3890 2.996621 CCTAGTGCTTGCACTTGTAGTC 59.003 50.000 29.37 0.83 36.68 2.59
146 3891 2.872038 GCCTAGTGCTTGCACTTGTAGT 60.872 50.000 29.37 10.28 36.68 2.73
147 3892 1.734465 GCCTAGTGCTTGCACTTGTAG 59.266 52.381 29.37 20.93 36.68 2.74
148 3893 1.808411 GCCTAGTGCTTGCACTTGTA 58.192 50.000 29.37 13.73 36.68 2.41
149 3894 2.633860 GCCTAGTGCTTGCACTTGT 58.366 52.632 29.37 11.63 36.68 3.16
272 4017 9.764363 AGACCACAGATTTTTAAATTTTCTTCC 57.236 29.630 0.00 0.00 0.00 3.46
294 4051 5.405873 GTCCGCTTTTGCTATTATCTAGACC 59.594 44.000 0.00 0.00 44.80 3.85
295 4052 6.217294 AGTCCGCTTTTGCTATTATCTAGAC 58.783 40.000 0.00 0.00 44.80 2.59
373 4134 7.066525 GTCTTCCGTCAATTAATGGGTAATTCA 59.933 37.037 0.00 0.00 39.88 2.57
374 4135 7.415229 GTCTTCCGTCAATTAATGGGTAATTC 58.585 38.462 0.00 0.00 39.88 2.17
562 4962 1.218230 GATTCATCGCCAGCTCGGAC 61.218 60.000 6.40 0.00 36.56 4.79
610 5010 1.003355 CATCCGGTGAGTTGGCACT 60.003 57.895 0.00 0.00 38.78 4.40
627 5027 2.214216 AGGTGACTAGGTTGCGGCA 61.214 57.895 0.00 0.00 40.61 5.69
662 5062 1.600638 CACCTGCCTGAGCTCATCA 59.399 57.895 18.63 16.60 40.80 3.07
761 5168 0.311165 ACTCACTTGTGACCTCGACG 59.689 55.000 0.00 0.00 0.00 5.12
792 5199 2.103143 CGCTTCGCCTCTGTCGAT 59.897 61.111 0.00 0.00 35.75 3.59
816 5223 1.607148 CGGGCTATAGACGATGTGTGA 59.393 52.381 3.21 0.00 0.00 3.58
863 5270 4.058817 GCTTGCACTTATATAGCGAGGTT 58.941 43.478 10.28 0.00 39.60 3.50
869 5276 7.224753 TGTGTTTAGAGCTTGCACTTATATAGC 59.775 37.037 0.00 0.00 0.00 2.97
893 5301 0.746563 CGTGTGGGTGTCTTTGGTGT 60.747 55.000 0.00 0.00 0.00 4.16
940 5400 3.543852 GGTTACGTACGTGTGGTTGTTTG 60.544 47.826 30.25 0.00 0.00 2.93
1227 5688 0.872021 GGAAGCAGGCGTAGTCGATG 60.872 60.000 0.00 0.00 36.95 3.84
1519 5980 2.261671 GACGAGTGTGCCGATGGT 59.738 61.111 0.00 0.00 0.00 3.55
1528 5989 0.032678 CTGCAGTTGAGGACGAGTGT 59.967 55.000 5.25 0.00 34.33 3.55
1530 5991 1.005630 GCTGCAGTTGAGGACGAGT 60.006 57.895 16.64 0.00 0.00 4.18
1587 6048 2.139917 CTGCGCAGGTTGTACTTGTTA 58.860 47.619 29.88 0.00 0.00 2.41
1778 6239 9.527157 TGAAATTCACTAGGATCCAACAAATTA 57.473 29.630 15.82 0.00 0.00 1.40
1824 6286 5.181056 CAGTATTTTGGTTTTCATTTGGGCC 59.819 40.000 0.00 0.00 0.00 5.80
2109 6571 2.828549 GCGGAACCGGGCATTCAT 60.829 61.111 15.01 0.00 40.19 2.57
2192 6654 1.305381 CCCTTGGTCGTCCTCCTCT 60.305 63.158 0.00 0.00 34.23 3.69
2912 11336 9.243105 ACCATCCCAAAATATAGTGCATATTAC 57.757 33.333 0.00 0.00 38.61 1.89
2977 11615 5.107837 CGACATCTCACGTGATTATTTAGGC 60.108 44.000 20.40 6.40 0.00 3.93
2991 11632 3.305398 AGGTTTCTCACGACATCTCAC 57.695 47.619 0.00 0.00 0.00 3.51
3220 12554 0.389948 CCAGTTTCGACCTTCTCCGG 60.390 60.000 0.00 0.00 0.00 5.14
3572 13430 7.493367 ACTGCTCTTAGTGTTGTATAGATTCC 58.507 38.462 0.00 0.00 0.00 3.01
3642 13500 2.795175 ATGGACTAGGCGATACAACG 57.205 50.000 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.