Multiple sequence alignment - TraesCS7D01G035500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G035500 chr7D 100.000 3139 0 0 1 3139 18221762 18218624 0.000000e+00 5797
1 TraesCS7D01G035500 chr7A 89.167 1837 190 5 1305 3138 18617649 18615819 0.000000e+00 2281
2 TraesCS7D01G035500 chr7A 82.771 1718 272 22 1434 3139 17443953 17442248 0.000000e+00 1511
3 TraesCS7D01G035500 chr7A 82.477 1712 278 17 1440 3139 17888016 17886315 0.000000e+00 1480
4 TraesCS7D01G035500 chr7A 82.278 1721 281 18 1431 3139 17812275 17810567 0.000000e+00 1467
5 TraesCS7D01G035500 chr7A 81.024 1718 298 24 1435 3139 18501239 18502941 0.000000e+00 1341
6 TraesCS7D01G035500 chr7A 93.260 905 50 5 1 897 18642726 18641825 0.000000e+00 1323
7 TraesCS7D01G035500 chr7A 80.666 1712 309 19 1435 3138 18045127 18043430 0.000000e+00 1308
8 TraesCS7D01G035500 chr7A 91.532 248 21 0 895 1142 18617893 18617646 3.000000e-90 342
9 TraesCS7D01G035500 chr7A 84.118 170 24 3 989 1158 17888416 17888250 9.010000e-36 161
10 TraesCS7D01G035500 chr7A 84.298 121 17 2 1012 1131 17913019 17912900 1.980000e-22 117
11 TraesCS7D01G035500 chrUn 82.636 1722 272 23 1430 3138 278339801 278341508 0.000000e+00 1498
12 TraesCS7D01G035500 chrUn 82.667 1725 266 27 1430 3138 278347078 278348785 0.000000e+00 1498
13 TraesCS7D01G035500 chrUn 82.089 1714 283 19 1440 3139 294163401 294165104 0.000000e+00 1443
14 TraesCS7D01G035500 chrUn 78.223 1722 325 34 1439 3137 89863746 89865440 0.000000e+00 1057
15 TraesCS7D01G035500 chrUn 85.041 615 89 3 1430 2043 50586396 50585784 9.560000e-175 623
16 TraesCS7D01G035500 chrUn 85.000 160 22 2 989 1148 294163007 294163164 9.010000e-36 161
17 TraesCS7D01G035500 chr4A 82.274 1715 284 16 1434 3138 714418702 714420406 0.000000e+00 1465
18 TraesCS7D01G035500 chr4A 81.765 1722 288 19 1431 3139 715507569 715509277 0.000000e+00 1417
19 TraesCS7D01G035500 chr6B 82.062 1717 283 20 1436 3139 208175886 208177590 0.000000e+00 1441


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G035500 chr7D 18218624 18221762 3138 True 5797.0 5797 100.0000 1 3139 1 chr7D.!!$R1 3138
1 TraesCS7D01G035500 chr7A 17442248 17443953 1705 True 1511.0 1511 82.7710 1434 3139 1 chr7A.!!$R1 1705
2 TraesCS7D01G035500 chr7A 17810567 17812275 1708 True 1467.0 1467 82.2780 1431 3139 1 chr7A.!!$R2 1708
3 TraesCS7D01G035500 chr7A 18501239 18502941 1702 False 1341.0 1341 81.0240 1435 3139 1 chr7A.!!$F1 1704
4 TraesCS7D01G035500 chr7A 18641825 18642726 901 True 1323.0 1323 93.2600 1 897 1 chr7A.!!$R5 896
5 TraesCS7D01G035500 chr7A 18615819 18617893 2074 True 1311.5 2281 90.3495 895 3138 2 chr7A.!!$R7 2243
6 TraesCS7D01G035500 chr7A 18043430 18045127 1697 True 1308.0 1308 80.6660 1435 3138 1 chr7A.!!$R4 1703
7 TraesCS7D01G035500 chr7A 17886315 17888416 2101 True 820.5 1480 83.2975 989 3139 2 chr7A.!!$R6 2150
8 TraesCS7D01G035500 chrUn 278339801 278341508 1707 False 1498.0 1498 82.6360 1430 3138 1 chrUn.!!$F2 1708
9 TraesCS7D01G035500 chrUn 278347078 278348785 1707 False 1498.0 1498 82.6670 1430 3138 1 chrUn.!!$F3 1708
10 TraesCS7D01G035500 chrUn 89863746 89865440 1694 False 1057.0 1057 78.2230 1439 3137 1 chrUn.!!$F1 1698
11 TraesCS7D01G035500 chrUn 294163007 294165104 2097 False 802.0 1443 83.5445 989 3139 2 chrUn.!!$F4 2150
12 TraesCS7D01G035500 chrUn 50585784 50586396 612 True 623.0 623 85.0410 1430 2043 1 chrUn.!!$R1 613
13 TraesCS7D01G035500 chr4A 714418702 714420406 1704 False 1465.0 1465 82.2740 1434 3138 1 chr4A.!!$F1 1704
14 TraesCS7D01G035500 chr4A 715507569 715509277 1708 False 1417.0 1417 81.7650 1431 3139 1 chr4A.!!$F2 1708
15 TraesCS7D01G035500 chr6B 208175886 208177590 1704 False 1441.0 1441 82.0620 1436 3139 1 chr6B.!!$F1 1703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 869 0.033366 TGCAAGCAGCTTCTCGTGTA 59.967 50.0 4.07 0.0 45.94 2.90 F
973 982 0.035458 ACACCTCCAGCAAGCAGTAC 59.965 55.0 0.00 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2186 1.264288 CAAGAAACTTGGCGAGGTCAC 59.736 52.381 6.71 0.0 0.00 3.67 R
2957 3053 1.851304 GGACATGGCTCCAATCCAAA 58.149 50.000 14.40 0.0 37.13 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 79 2.123769 TTTGTGCACCAGCTGCCT 60.124 55.556 15.69 0.00 46.51 4.75
89 95 4.784838 AGCTGCCTGATCATGGGTATTATA 59.215 41.667 11.63 0.00 0.00 0.98
95 101 8.835734 TGCCTGATCATGGGTATTATACTAAAT 58.164 33.333 11.63 0.00 0.00 1.40
121 127 3.269178 GCTCTGCTTTTAGCTGATCACT 58.731 45.455 8.40 0.00 45.85 3.41
187 193 9.003112 CAGTATTTAATTGATCACTTTGCTTCG 57.997 33.333 3.40 0.00 0.00 3.79
213 220 1.407979 CCTGCTTCAAAGGATCATGGC 59.592 52.381 0.00 0.00 36.91 4.40
215 222 0.749049 GCTTCAAAGGATCATGGCCC 59.251 55.000 0.00 0.00 0.00 5.80
223 230 2.361218 AGGATCATGGCCCCATTATGA 58.639 47.619 0.00 2.06 33.90 2.15
234 241 4.319177 GCCCCATTATGAGTGTACATCTC 58.681 47.826 14.75 14.75 0.00 2.75
331 338 2.413310 TTACGGCCCTCTCATTTTCC 57.587 50.000 0.00 0.00 0.00 3.13
488 497 2.102070 TGGATGTACCAAAATCGCGT 57.898 45.000 5.77 0.00 46.75 6.01
489 498 1.735018 TGGATGTACCAAAATCGCGTG 59.265 47.619 5.77 0.00 46.75 5.34
491 500 0.450184 ATGTACCAAAATCGCGTGGC 59.550 50.000 12.93 0.00 38.58 5.01
492 501 0.885150 TGTACCAAAATCGCGTGGCA 60.885 50.000 12.93 0.00 38.58 4.92
493 502 0.450184 GTACCAAAATCGCGTGGCAT 59.550 50.000 12.93 0.00 38.58 4.40
494 503 0.449786 TACCAAAATCGCGTGGCATG 59.550 50.000 12.93 1.31 38.58 4.06
495 504 2.160221 CCAAAATCGCGTGGCATGC 61.160 57.895 21.61 21.61 0.00 4.06
525 534 2.566833 TTGCTGCCTCTAAGCTTTCA 57.433 45.000 3.20 0.00 41.42 2.69
536 545 4.753233 TCTAAGCTTTCATCTCTGCAGTC 58.247 43.478 14.67 0.00 0.00 3.51
554 563 1.597663 GTCCTATGGTTTTGCGATCCG 59.402 52.381 0.00 0.00 0.00 4.18
591 600 6.615088 CAACAAGATTATGGAGAACAACCAG 58.385 40.000 0.00 0.00 40.89 4.00
603 612 4.144297 AGAACAACCAGAGCTGCAAATTA 58.856 39.130 1.02 0.00 0.00 1.40
630 639 3.949031 GCAAAGCCAAAACACGGTA 57.051 47.368 0.00 0.00 0.00 4.02
647 656 6.934056 ACACGGTAATACACATTGGTAACTA 58.066 36.000 0.00 0.00 37.61 2.24
652 661 8.706035 CGGTAATACACATTGGTAACTATAAGC 58.294 37.037 0.00 0.00 37.61 3.09
697 706 4.176271 TCTATTGTGCTCACATCGACAAG 58.824 43.478 3.31 0.00 41.52 3.16
698 707 2.238942 TTGTGCTCACATCGACAAGT 57.761 45.000 3.31 0.00 41.52 3.16
699 708 3.378911 TTGTGCTCACATCGACAAGTA 57.621 42.857 3.31 0.00 41.52 2.24
700 709 3.592898 TGTGCTCACATCGACAAGTAT 57.407 42.857 0.00 0.00 36.21 2.12
701 710 3.925379 TGTGCTCACATCGACAAGTATT 58.075 40.909 0.00 0.00 36.21 1.89
702 711 3.926527 TGTGCTCACATCGACAAGTATTC 59.073 43.478 0.00 0.00 36.21 1.75
703 712 3.926527 GTGCTCACATCGACAAGTATTCA 59.073 43.478 0.00 0.00 0.00 2.57
704 713 4.568359 GTGCTCACATCGACAAGTATTCAT 59.432 41.667 0.00 0.00 0.00 2.57
705 714 5.063944 GTGCTCACATCGACAAGTATTCATT 59.936 40.000 0.00 0.00 0.00 2.57
706 715 5.063817 TGCTCACATCGACAAGTATTCATTG 59.936 40.000 0.00 0.00 0.00 2.82
707 716 5.469373 TCACATCGACAAGTATTCATTGC 57.531 39.130 0.00 0.00 0.00 3.56
708 717 5.178061 TCACATCGACAAGTATTCATTGCT 58.822 37.500 0.00 0.00 0.00 3.91
709 718 5.643348 TCACATCGACAAGTATTCATTGCTT 59.357 36.000 0.00 0.00 0.00 3.91
710 719 5.735892 CACATCGACAAGTATTCATTGCTTG 59.264 40.000 0.00 0.00 43.56 4.01
711 720 4.340894 TCGACAAGTATTCATTGCTTGC 57.659 40.909 3.76 0.00 42.20 4.01
712 721 3.750652 TCGACAAGTATTCATTGCTTGCA 59.249 39.130 3.76 0.00 42.20 4.08
713 722 3.848019 CGACAAGTATTCATTGCTTGCAC 59.152 43.478 0.00 0.00 42.20 4.57
714 723 4.613394 CGACAAGTATTCATTGCTTGCACA 60.613 41.667 0.00 0.00 42.20 4.57
715 724 5.395682 ACAAGTATTCATTGCTTGCACAT 57.604 34.783 0.00 0.00 42.20 3.21
716 725 5.165676 ACAAGTATTCATTGCTTGCACATG 58.834 37.500 0.00 0.00 42.20 3.21
717 726 5.047872 ACAAGTATTCATTGCTTGCACATGA 60.048 36.000 0.00 12.72 42.20 3.07
718 727 4.990257 AGTATTCATTGCTTGCACATGAC 58.010 39.130 0.00 0.00 0.00 3.06
719 728 4.703575 AGTATTCATTGCTTGCACATGACT 59.296 37.500 0.00 13.19 0.00 3.41
720 729 5.882000 AGTATTCATTGCTTGCACATGACTA 59.118 36.000 0.00 12.55 0.00 2.59
721 730 4.424061 TTCATTGCTTGCACATGACTAC 57.576 40.909 0.00 0.00 0.00 2.73
722 731 3.678289 TCATTGCTTGCACATGACTACT 58.322 40.909 0.00 0.00 0.00 2.57
723 732 4.831107 TCATTGCTTGCACATGACTACTA 58.169 39.130 0.00 0.00 0.00 1.82
724 733 5.244755 TCATTGCTTGCACATGACTACTAA 58.755 37.500 0.00 0.00 0.00 2.24
725 734 5.704978 TCATTGCTTGCACATGACTACTAAA 59.295 36.000 0.00 0.00 0.00 1.85
726 735 5.356882 TTGCTTGCACATGACTACTAAAC 57.643 39.130 0.00 0.00 0.00 2.01
727 736 4.384940 TGCTTGCACATGACTACTAAACA 58.615 39.130 0.00 0.00 0.00 2.83
728 737 4.213270 TGCTTGCACATGACTACTAAACAC 59.787 41.667 0.00 0.00 0.00 3.32
729 738 4.666655 GCTTGCACATGACTACTAAACACG 60.667 45.833 0.00 0.00 0.00 4.49
730 739 2.734606 TGCACATGACTACTAAACACGC 59.265 45.455 0.00 0.00 0.00 5.34
731 740 2.222508 GCACATGACTACTAAACACGCG 60.223 50.000 3.53 3.53 0.00 6.01
732 741 2.344441 CACATGACTACTAAACACGCGG 59.656 50.000 12.47 1.27 0.00 6.46
733 742 1.323534 CATGACTACTAAACACGCGGC 59.676 52.381 12.47 0.00 0.00 6.53
734 743 0.314618 TGACTACTAAACACGCGGCA 59.685 50.000 12.47 0.00 0.00 5.69
735 744 1.269673 TGACTACTAAACACGCGGCAA 60.270 47.619 12.47 0.00 0.00 4.52
736 745 1.389106 GACTACTAAACACGCGGCAAG 59.611 52.381 12.47 2.69 0.00 4.01
737 746 1.000060 ACTACTAAACACGCGGCAAGA 60.000 47.619 12.47 0.00 0.00 3.02
738 747 1.654105 CTACTAAACACGCGGCAAGAG 59.346 52.381 12.47 4.43 0.00 2.85
739 748 0.249741 ACTAAACACGCGGCAAGAGT 60.250 50.000 12.47 5.15 0.00 3.24
740 749 0.865769 CTAAACACGCGGCAAGAGTT 59.134 50.000 12.47 2.21 0.00 3.01
741 750 0.584396 TAAACACGCGGCAAGAGTTG 59.416 50.000 12.47 0.00 0.00 3.16
742 751 1.373590 AAACACGCGGCAAGAGTTGT 61.374 50.000 12.47 0.00 0.00 3.32
743 752 0.531090 AACACGCGGCAAGAGTTGTA 60.531 50.000 12.47 0.00 0.00 2.41
744 753 0.320421 ACACGCGGCAAGAGTTGTAT 60.320 50.000 12.47 0.00 0.00 2.29
745 754 1.067425 ACACGCGGCAAGAGTTGTATA 60.067 47.619 12.47 0.00 0.00 1.47
746 755 1.323534 CACGCGGCAAGAGTTGTATAC 59.676 52.381 12.47 0.00 0.00 1.47
747 756 1.067425 ACGCGGCAAGAGTTGTATACA 60.067 47.619 12.47 0.08 0.00 2.29
748 757 1.323534 CGCGGCAAGAGTTGTATACAC 59.676 52.381 4.68 1.30 0.00 2.90
749 758 1.323534 GCGGCAAGAGTTGTATACACG 59.676 52.381 4.68 4.53 0.00 4.49
750 759 2.602878 CGGCAAGAGTTGTATACACGT 58.397 47.619 4.68 0.00 0.00 4.49
751 760 3.761657 CGGCAAGAGTTGTATACACGTA 58.238 45.455 4.68 0.00 0.00 3.57
752 761 3.545078 CGGCAAGAGTTGTATACACGTAC 59.455 47.826 4.68 1.31 0.00 3.67
753 762 4.673580 CGGCAAGAGTTGTATACACGTACT 60.674 45.833 4.68 6.74 0.00 2.73
754 763 5.166398 GGCAAGAGTTGTATACACGTACTT 58.834 41.667 4.68 6.53 0.00 2.24
755 764 6.324819 GGCAAGAGTTGTATACACGTACTTA 58.675 40.000 4.68 0.00 0.00 2.24
756 765 6.976925 GGCAAGAGTTGTATACACGTACTTAT 59.023 38.462 4.68 0.00 0.00 1.73
757 766 7.490402 GGCAAGAGTTGTATACACGTACTTATT 59.510 37.037 4.68 3.92 0.00 1.40
758 767 8.318876 GCAAGAGTTGTATACACGTACTTATTG 58.681 37.037 19.02 19.02 31.26 1.90
759 768 8.804743 CAAGAGTTGTATACACGTACTTATTGG 58.195 37.037 4.68 0.02 0.00 3.16
760 769 8.284945 AGAGTTGTATACACGTACTTATTGGA 57.715 34.615 4.68 0.00 0.00 3.53
761 770 8.404000 AGAGTTGTATACACGTACTTATTGGAG 58.596 37.037 4.68 0.00 0.00 3.86
762 771 8.059798 AGTTGTATACACGTACTTATTGGAGT 57.940 34.615 4.68 0.00 0.00 3.85
763 772 9.177608 AGTTGTATACACGTACTTATTGGAGTA 57.822 33.333 4.68 0.00 0.00 2.59
764 773 9.787532 GTTGTATACACGTACTTATTGGAGTAA 57.212 33.333 4.68 0.00 34.15 2.24
766 775 8.623903 TGTATACACGTACTTATTGGAGTAAGG 58.376 37.037 0.08 0.00 36.38 2.69
767 776 5.990120 ACACGTACTTATTGGAGTAAGGT 57.010 39.130 0.00 0.00 36.38 3.50
768 777 6.350629 ACACGTACTTATTGGAGTAAGGTT 57.649 37.500 0.00 0.00 36.38 3.50
769 778 6.161381 ACACGTACTTATTGGAGTAAGGTTG 58.839 40.000 0.00 0.00 36.38 3.77
770 779 6.015180 ACACGTACTTATTGGAGTAAGGTTGA 60.015 38.462 0.00 0.00 36.38 3.18
771 780 7.039882 CACGTACTTATTGGAGTAAGGTTGAT 58.960 38.462 0.00 0.00 36.38 2.57
772 781 7.222224 CACGTACTTATTGGAGTAAGGTTGATC 59.778 40.741 0.00 0.00 36.38 2.92
773 782 7.093640 ACGTACTTATTGGAGTAAGGTTGATCA 60.094 37.037 0.00 0.00 36.38 2.92
774 783 7.762615 CGTACTTATTGGAGTAAGGTTGATCAA 59.237 37.037 3.38 3.38 36.27 2.57
775 784 9.614792 GTACTTATTGGAGTAAGGTTGATCAAT 57.385 33.333 12.12 0.00 36.27 2.57
789 798 7.707104 AGGTTGATCAATTAAATTAAGCTCCG 58.293 34.615 12.12 0.00 27.97 4.63
790 799 7.556275 AGGTTGATCAATTAAATTAAGCTCCGA 59.444 33.333 12.12 0.00 27.97 4.55
791 800 8.188139 GGTTGATCAATTAAATTAAGCTCCGAA 58.812 33.333 12.12 0.00 0.00 4.30
792 801 9.736023 GTTGATCAATTAAATTAAGCTCCGAAT 57.264 29.630 12.12 0.00 0.00 3.34
794 803 9.734620 TGATCAATTAAATTAAGCTCCGAATTG 57.265 29.630 0.00 0.00 35.25 2.32
795 804 7.985634 TCAATTAAATTAAGCTCCGAATTGC 57.014 32.000 0.00 0.00 34.39 3.56
796 805 7.771183 TCAATTAAATTAAGCTCCGAATTGCT 58.229 30.769 0.00 0.00 41.82 3.91
797 806 8.898761 TCAATTAAATTAAGCTCCGAATTGCTA 58.101 29.630 0.00 0.00 38.75 3.49
798 807 9.173939 CAATTAAATTAAGCTCCGAATTGCTAG 57.826 33.333 0.00 0.00 38.75 3.42
799 808 4.820284 AATTAAGCTCCGAATTGCTAGC 57.180 40.909 8.10 8.10 38.75 3.42
800 809 2.240493 TAAGCTCCGAATTGCTAGCC 57.760 50.000 13.29 0.00 38.75 3.93
801 810 0.464554 AAGCTCCGAATTGCTAGCCC 60.465 55.000 13.29 0.00 38.75 5.19
802 811 1.894282 GCTCCGAATTGCTAGCCCC 60.894 63.158 13.29 0.00 0.00 5.80
803 812 1.832912 CTCCGAATTGCTAGCCCCT 59.167 57.895 13.29 0.00 0.00 4.79
804 813 0.181350 CTCCGAATTGCTAGCCCCTT 59.819 55.000 13.29 2.55 0.00 3.95
805 814 0.107214 TCCGAATTGCTAGCCCCTTG 60.107 55.000 13.29 0.00 0.00 3.61
806 815 1.103398 CCGAATTGCTAGCCCCTTGG 61.103 60.000 13.29 5.12 0.00 3.61
822 831 4.876701 GGCATGTTAGCCGATGGA 57.123 55.556 0.00 0.00 46.12 3.41
823 832 2.321213 GGCATGTTAGCCGATGGAC 58.679 57.895 0.00 0.00 46.12 4.02
824 833 0.179045 GGCATGTTAGCCGATGGACT 60.179 55.000 0.00 0.00 46.12 3.85
825 834 1.668419 GCATGTTAGCCGATGGACTT 58.332 50.000 0.00 0.00 0.00 3.01
826 835 1.599542 GCATGTTAGCCGATGGACTTC 59.400 52.381 0.00 0.00 0.00 3.01
827 836 2.905075 CATGTTAGCCGATGGACTTCA 58.095 47.619 0.00 0.00 0.00 3.02
828 837 2.380084 TGTTAGCCGATGGACTTCAC 57.620 50.000 0.00 0.00 0.00 3.18
829 838 1.278238 GTTAGCCGATGGACTTCACG 58.722 55.000 0.00 0.00 0.00 4.35
830 839 0.892755 TTAGCCGATGGACTTCACGT 59.107 50.000 0.00 0.00 0.00 4.49
831 840 0.172578 TAGCCGATGGACTTCACGTG 59.827 55.000 9.94 9.94 0.00 4.49
832 841 1.374252 GCCGATGGACTTCACGTGT 60.374 57.895 16.51 0.00 0.00 4.49
833 842 1.626654 GCCGATGGACTTCACGTGTG 61.627 60.000 16.51 12.19 0.00 3.82
834 843 0.319555 CCGATGGACTTCACGTGTGT 60.320 55.000 16.51 15.37 0.00 3.72
836 845 0.512952 GATGGACTTCACGTGTGTGC 59.487 55.000 16.51 19.48 46.01 4.57
837 846 0.179059 ATGGACTTCACGTGTGTGCA 60.179 50.000 27.89 27.89 46.01 4.57
838 847 1.087202 TGGACTTCACGTGTGTGCAC 61.087 55.000 24.56 10.75 46.01 4.57
839 848 1.087202 GGACTTCACGTGTGTGCACA 61.087 55.000 17.42 17.42 46.01 4.57
840 849 0.937304 GACTTCACGTGTGTGCACAT 59.063 50.000 24.69 3.32 46.01 3.21
841 850 1.330521 GACTTCACGTGTGTGCACATT 59.669 47.619 24.69 5.06 46.01 2.71
842 851 1.063912 ACTTCACGTGTGTGCACATTG 59.936 47.619 24.69 17.53 46.01 2.82
843 852 0.248417 TTCACGTGTGTGCACATTGC 60.248 50.000 24.69 14.65 46.01 3.56
852 861 4.667420 GCACATTGCAAGCAGCTT 57.333 50.000 4.94 0.21 44.26 3.74
853 862 2.442084 GCACATTGCAAGCAGCTTC 58.558 52.632 4.07 1.12 44.26 3.86
854 863 0.038526 GCACATTGCAAGCAGCTTCT 60.039 50.000 4.07 0.00 44.26 2.85
855 864 1.978542 CACATTGCAAGCAGCTTCTC 58.021 50.000 4.07 0.55 45.94 2.87
856 865 0.520404 ACATTGCAAGCAGCTTCTCG 59.480 50.000 4.07 0.00 45.94 4.04
857 866 0.520404 CATTGCAAGCAGCTTCTCGT 59.480 50.000 4.07 0.00 45.94 4.18
858 867 0.520404 ATTGCAAGCAGCTTCTCGTG 59.480 50.000 4.07 0.00 45.94 4.35
859 868 0.815213 TTGCAAGCAGCTTCTCGTGT 60.815 50.000 4.07 0.00 45.94 4.49
860 869 0.033366 TGCAAGCAGCTTCTCGTGTA 59.967 50.000 4.07 0.00 45.94 2.90
861 870 0.440371 GCAAGCAGCTTCTCGTGTAC 59.560 55.000 4.07 0.00 41.15 2.90
862 871 1.783284 CAAGCAGCTTCTCGTGTACA 58.217 50.000 4.07 0.00 0.00 2.90
863 872 1.457303 CAAGCAGCTTCTCGTGTACAC 59.543 52.381 16.32 16.32 0.00 2.90
864 873 0.962489 AGCAGCTTCTCGTGTACACT 59.038 50.000 23.01 0.00 0.00 3.55
865 874 1.063806 GCAGCTTCTCGTGTACACTG 58.936 55.000 23.01 16.14 0.00 3.66
866 875 1.063806 CAGCTTCTCGTGTACACTGC 58.936 55.000 23.01 17.20 0.00 4.40
867 876 0.962489 AGCTTCTCGTGTACACTGCT 59.038 50.000 23.01 18.84 0.00 4.24
868 877 1.068194 AGCTTCTCGTGTACACTGCTC 60.068 52.381 23.01 7.84 0.00 4.26
869 878 1.068194 GCTTCTCGTGTACACTGCTCT 60.068 52.381 23.01 0.00 0.00 4.09
870 879 2.161808 GCTTCTCGTGTACACTGCTCTA 59.838 50.000 23.01 3.78 0.00 2.43
871 880 3.181495 GCTTCTCGTGTACACTGCTCTAT 60.181 47.826 23.01 0.00 0.00 1.98
872 881 4.346970 CTTCTCGTGTACACTGCTCTATG 58.653 47.826 23.01 5.75 0.00 2.23
873 882 3.606687 TCTCGTGTACACTGCTCTATGA 58.393 45.455 23.01 9.65 0.00 2.15
874 883 4.007659 TCTCGTGTACACTGCTCTATGAA 58.992 43.478 23.01 0.71 0.00 2.57
875 884 4.457949 TCTCGTGTACACTGCTCTATGAAA 59.542 41.667 23.01 0.00 0.00 2.69
876 885 5.048294 TCTCGTGTACACTGCTCTATGAAAA 60.048 40.000 23.01 0.38 0.00 2.29
877 886 5.720202 TCGTGTACACTGCTCTATGAAAAT 58.280 37.500 23.01 0.00 0.00 1.82
878 887 5.805486 TCGTGTACACTGCTCTATGAAAATC 59.195 40.000 23.01 0.00 0.00 2.17
879 888 5.005779 CGTGTACACTGCTCTATGAAAATCC 59.994 44.000 23.01 0.00 0.00 3.01
880 889 5.294552 GTGTACACTGCTCTATGAAAATCCC 59.705 44.000 18.92 0.00 0.00 3.85
881 890 3.891049 ACACTGCTCTATGAAAATCCCC 58.109 45.455 0.00 0.00 0.00 4.81
882 891 2.874701 CACTGCTCTATGAAAATCCCCG 59.125 50.000 0.00 0.00 0.00 5.73
883 892 2.158755 ACTGCTCTATGAAAATCCCCGG 60.159 50.000 0.00 0.00 0.00 5.73
884 893 1.142870 TGCTCTATGAAAATCCCCGGG 59.857 52.381 15.80 15.80 0.00 5.73
885 894 1.897560 CTCTATGAAAATCCCCGGGC 58.102 55.000 17.73 0.00 0.00 6.13
886 895 1.421646 CTCTATGAAAATCCCCGGGCT 59.578 52.381 17.73 0.11 0.00 5.19
887 896 1.850345 TCTATGAAAATCCCCGGGCTT 59.150 47.619 17.73 8.00 0.00 4.35
888 897 1.956477 CTATGAAAATCCCCGGGCTTG 59.044 52.381 17.73 0.68 0.00 4.01
889 898 1.329913 ATGAAAATCCCCGGGCTTGC 61.330 55.000 17.73 7.13 0.00 4.01
890 899 2.683572 AAAATCCCCGGGCTTGCC 60.684 61.111 17.73 2.49 0.00 4.52
891 900 4.777854 AAATCCCCGGGCTTGCCC 62.778 66.667 17.73 20.15 0.00 5.36
893 902 4.835456 ATCCCCGGGCTTGCCCTA 62.835 66.667 25.99 10.91 0.00 3.53
906 915 1.762708 TGCCCTATAAAAGCAGCACC 58.237 50.000 0.00 0.00 30.49 5.01
907 916 0.663153 GCCCTATAAAAGCAGCACCG 59.337 55.000 0.00 0.00 0.00 4.94
910 919 1.331756 CCTATAAAAGCAGCACCGCAG 59.668 52.381 0.00 0.00 0.00 5.18
919 928 2.110967 AGCACCGCAGCTAGCATTG 61.111 57.895 18.83 8.65 44.50 2.82
923 932 1.890979 CCGCAGCTAGCATTGGGAG 60.891 63.158 18.83 6.35 46.13 4.30
943 952 4.632327 AGCTCACTTTTCTTAGCTCCTT 57.368 40.909 0.00 0.00 41.35 3.36
944 953 4.322567 AGCTCACTTTTCTTAGCTCCTTG 58.677 43.478 0.00 0.00 41.35 3.61
970 979 0.535780 TCAACACCTCCAGCAAGCAG 60.536 55.000 0.00 0.00 0.00 4.24
971 980 0.820891 CAACACCTCCAGCAAGCAGT 60.821 55.000 0.00 0.00 0.00 4.40
973 982 0.035458 ACACCTCCAGCAAGCAGTAC 59.965 55.000 0.00 0.00 0.00 2.73
991 1000 2.052690 CCGGTCGTGAGAGGGTCAT 61.053 63.158 0.00 0.00 43.49 3.06
1048 1057 0.674895 GAGCATGGCGAAGTCCTTGT 60.675 55.000 0.00 0.00 33.74 3.16
1113 1122 0.613572 TGAGCCTCGTCATGGGTGTA 60.614 55.000 0.00 0.00 35.20 2.90
1144 1153 2.345876 TCTGGTATGTTCACATGCACG 58.654 47.619 9.81 0.00 40.14 5.34
1154 1163 4.095036 TGTTCACATGCACGTCTTTTGTTA 59.905 37.500 0.00 0.00 0.00 2.41
1155 1164 4.203950 TCACATGCACGTCTTTTGTTAC 57.796 40.909 0.00 0.00 0.00 2.50
1156 1165 3.623510 TCACATGCACGTCTTTTGTTACA 59.376 39.130 0.00 0.00 0.00 2.41
1158 1167 3.625764 ACATGCACGTCTTTTGTTACAGT 59.374 39.130 0.00 0.00 0.00 3.55
1163 1172 4.025229 GCACGTCTTTTGTTACAGTCATGA 60.025 41.667 0.00 0.00 0.00 3.07
1164 1173 5.432157 CACGTCTTTTGTTACAGTCATGAC 58.568 41.667 18.47 18.47 0.00 3.06
1165 1174 4.208460 ACGTCTTTTGTTACAGTCATGACG 59.792 41.667 19.85 16.37 46.46 4.35
1166 1175 4.443063 CGTCTTTTGTTACAGTCATGACGA 59.557 41.667 19.85 7.10 44.72 4.20
1167 1176 5.051307 CGTCTTTTGTTACAGTCATGACGAA 60.051 40.000 19.85 12.58 44.72 3.85
1169 1178 6.018994 GTCTTTTGTTACAGTCATGACGAACT 60.019 38.462 27.00 14.06 36.20 3.01
1170 1179 6.537301 TCTTTTGTTACAGTCATGACGAACTT 59.463 34.615 27.00 14.03 36.20 2.66
1171 1180 5.900339 TTGTTACAGTCATGACGAACTTC 57.100 39.130 27.00 16.79 36.20 3.01
1173 1182 2.457366 ACAGTCATGACGAACTTCCC 57.543 50.000 19.85 0.00 36.20 3.97
1174 1183 1.691976 ACAGTCATGACGAACTTCCCA 59.308 47.619 19.85 0.00 36.20 4.37
1176 1185 1.068474 GTCATGACGAACTTCCCACG 58.932 55.000 10.69 0.00 0.00 4.94
1177 1186 0.037697 TCATGACGAACTTCCCACGG 60.038 55.000 0.00 0.00 0.00 4.94
1180 1189 1.180456 TGACGAACTTCCCACGGCTA 61.180 55.000 0.00 0.00 35.96 3.93
1183 1192 1.449778 GAACTTCCCACGGCTAGCC 60.450 63.158 24.75 24.75 0.00 3.93
1184 1193 1.900545 GAACTTCCCACGGCTAGCCT 61.901 60.000 30.55 15.41 0.00 4.58
1185 1194 1.489560 AACTTCCCACGGCTAGCCTT 61.490 55.000 30.55 20.20 0.00 4.35
1186 1195 1.299976 CTTCCCACGGCTAGCCTTT 59.700 57.895 30.55 15.31 0.00 3.11
1188 1197 0.985760 TTCCCACGGCTAGCCTTTTA 59.014 50.000 30.55 10.14 0.00 1.52
1190 1199 0.035820 CCCACGGCTAGCCTTTTACA 60.036 55.000 30.55 0.00 0.00 2.41
1191 1200 1.408266 CCCACGGCTAGCCTTTTACAT 60.408 52.381 30.55 5.15 0.00 2.29
1192 1201 2.365582 CCACGGCTAGCCTTTTACATT 58.634 47.619 30.55 2.50 0.00 2.71
1193 1202 2.354821 CCACGGCTAGCCTTTTACATTC 59.645 50.000 30.55 1.09 0.00 2.67
1194 1203 2.354821 CACGGCTAGCCTTTTACATTCC 59.645 50.000 30.55 0.55 0.00 3.01
1195 1204 2.238898 ACGGCTAGCCTTTTACATTCCT 59.761 45.455 30.55 0.00 0.00 3.36
1196 1205 3.453353 ACGGCTAGCCTTTTACATTCCTA 59.547 43.478 30.55 0.00 0.00 2.94
1197 1206 4.102681 ACGGCTAGCCTTTTACATTCCTAT 59.897 41.667 30.55 0.00 0.00 2.57
1198 1207 4.691216 CGGCTAGCCTTTTACATTCCTATC 59.309 45.833 30.55 0.00 0.00 2.08
1199 1208 5.621193 GGCTAGCCTTTTACATTCCTATCA 58.379 41.667 27.17 0.00 0.00 2.15
1200 1209 5.470437 GGCTAGCCTTTTACATTCCTATCAC 59.530 44.000 27.17 0.00 0.00 3.06
1201 1210 5.177696 GCTAGCCTTTTACATTCCTATCACG 59.822 44.000 2.29 0.00 0.00 4.35
1202 1211 5.353394 AGCCTTTTACATTCCTATCACGA 57.647 39.130 0.00 0.00 0.00 4.35
1203 1212 5.741011 AGCCTTTTACATTCCTATCACGAA 58.259 37.500 0.00 0.00 0.00 3.85
1204 1213 6.177610 AGCCTTTTACATTCCTATCACGAAA 58.822 36.000 0.00 0.00 0.00 3.46
1205 1214 6.093633 AGCCTTTTACATTCCTATCACGAAAC 59.906 38.462 0.00 0.00 0.00 2.78
1206 1215 6.093633 GCCTTTTACATTCCTATCACGAAACT 59.906 38.462 0.00 0.00 0.00 2.66
1207 1216 7.464358 CCTTTTACATTCCTATCACGAAACTG 58.536 38.462 0.00 0.00 0.00 3.16
1208 1217 7.333423 CCTTTTACATTCCTATCACGAAACTGA 59.667 37.037 0.00 0.00 0.00 3.41
1209 1218 7.591006 TTTACATTCCTATCACGAAACTGAC 57.409 36.000 0.00 0.00 0.00 3.51
1210 1219 5.147330 ACATTCCTATCACGAAACTGACA 57.853 39.130 0.00 0.00 0.00 3.58
1211 1220 5.734720 ACATTCCTATCACGAAACTGACAT 58.265 37.500 0.00 0.00 0.00 3.06
1212 1221 5.812642 ACATTCCTATCACGAAACTGACATC 59.187 40.000 0.00 0.00 0.00 3.06
1213 1222 4.386867 TCCTATCACGAAACTGACATCC 57.613 45.455 0.00 0.00 0.00 3.51
1214 1223 3.767131 TCCTATCACGAAACTGACATCCA 59.233 43.478 0.00 0.00 0.00 3.41
1215 1224 4.221924 TCCTATCACGAAACTGACATCCAA 59.778 41.667 0.00 0.00 0.00 3.53
1216 1225 5.104941 TCCTATCACGAAACTGACATCCAAT 60.105 40.000 0.00 0.00 0.00 3.16
1217 1226 6.097696 TCCTATCACGAAACTGACATCCAATA 59.902 38.462 0.00 0.00 0.00 1.90
1218 1227 6.931281 CCTATCACGAAACTGACATCCAATAT 59.069 38.462 0.00 0.00 0.00 1.28
1219 1228 6.851222 ATCACGAAACTGACATCCAATATC 57.149 37.500 0.00 0.00 0.00 1.63
1220 1229 5.116180 TCACGAAACTGACATCCAATATCC 58.884 41.667 0.00 0.00 0.00 2.59
1221 1230 4.273480 CACGAAACTGACATCCAATATCCC 59.727 45.833 0.00 0.00 0.00 3.85
1222 1231 4.164221 ACGAAACTGACATCCAATATCCCT 59.836 41.667 0.00 0.00 0.00 4.20
1232 1241 8.112822 TGACATCCAATATCCCTTTTTCTGTTA 58.887 33.333 0.00 0.00 0.00 2.41
1233 1242 8.893563 ACATCCAATATCCCTTTTTCTGTTAA 57.106 30.769 0.00 0.00 0.00 2.01
1234 1243 9.320295 ACATCCAATATCCCTTTTTCTGTTAAA 57.680 29.630 0.00 0.00 0.00 1.52
1237 1246 9.374711 TCCAATATCCCTTTTTCTGTTAAAACT 57.625 29.630 0.00 0.00 0.00 2.66
1238 1247 9.996554 CCAATATCCCTTTTTCTGTTAAAACTT 57.003 29.630 0.00 0.00 0.00 2.66
1245 1254 9.309516 CCCTTTTTCTGTTAAAACTTTAAGTCC 57.690 33.333 0.00 0.00 33.66 3.85
1246 1255 9.309516 CCTTTTTCTGTTAAAACTTTAAGTCCC 57.690 33.333 0.00 0.00 33.66 4.46
1251 1260 9.863845 TTCTGTTAAAACTTTAAGTCCCTTTTG 57.136 29.630 0.00 0.00 33.66 2.44
1252 1261 9.027202 TCTGTTAAAACTTTAAGTCCCTTTTGT 57.973 29.630 0.00 0.00 33.66 2.83
1253 1262 9.647797 CTGTTAAAACTTTAAGTCCCTTTTGTT 57.352 29.630 0.00 0.00 33.66 2.83
1254 1263 9.425577 TGTTAAAACTTTAAGTCCCTTTTGTTG 57.574 29.630 0.00 0.00 33.66 3.33
1255 1264 8.875803 GTTAAAACTTTAAGTCCCTTTTGTTGG 58.124 33.333 0.00 0.00 33.66 3.77
1256 1265 5.607939 AACTTTAAGTCCCTTTTGTTGGG 57.392 39.130 0.00 0.00 45.90 4.12
1257 1266 4.616553 ACTTTAAGTCCCTTTTGTTGGGT 58.383 39.130 0.00 0.00 44.84 4.51
1258 1267 4.404394 ACTTTAAGTCCCTTTTGTTGGGTG 59.596 41.667 0.00 0.00 44.84 4.61
1259 1268 2.838637 AAGTCCCTTTTGTTGGGTGA 57.161 45.000 0.00 0.00 44.84 4.02
1260 1269 2.838637 AGTCCCTTTTGTTGGGTGAA 57.161 45.000 0.00 0.00 44.84 3.18
1261 1270 2.384828 AGTCCCTTTTGTTGGGTGAAC 58.615 47.619 0.00 0.00 44.84 3.18
1262 1271 2.104170 GTCCCTTTTGTTGGGTGAACA 58.896 47.619 0.00 0.00 44.84 3.18
1263 1272 2.104170 TCCCTTTTGTTGGGTGAACAC 58.896 47.619 0.00 0.00 44.53 3.32
1276 1285 4.073293 GGTGAACACCGGATTGATATCT 57.927 45.455 9.46 0.00 42.29 1.98
1277 1286 4.451900 GGTGAACACCGGATTGATATCTT 58.548 43.478 9.46 0.00 42.29 2.40
1278 1287 5.607477 GGTGAACACCGGATTGATATCTTA 58.393 41.667 9.46 0.00 42.29 2.10
1279 1288 6.053005 GGTGAACACCGGATTGATATCTTAA 58.947 40.000 9.46 0.00 42.29 1.85
1280 1289 6.710744 GGTGAACACCGGATTGATATCTTAAT 59.289 38.462 9.46 0.00 42.29 1.40
1281 1290 7.307989 GGTGAACACCGGATTGATATCTTAATG 60.308 40.741 9.46 0.00 42.29 1.90
1282 1291 6.204688 TGAACACCGGATTGATATCTTAATGC 59.795 38.462 9.46 1.12 0.00 3.56
1285 1294 5.062683 CACCGGATTGATATCTTAATGCTCG 59.937 44.000 9.46 1.45 0.00 5.03
1291 1300 8.559536 GGATTGATATCTTAATGCTCGTGAAAA 58.440 33.333 3.98 0.00 0.00 2.29
1394 1406 5.357742 TGGAGCTGCAGATACTATTTTGA 57.642 39.130 20.43 0.00 0.00 2.69
1420 1432 1.202382 GCGGGAATGTACTAAGCGTCT 60.202 52.381 0.00 0.00 0.00 4.18
1426 1438 2.074547 TGTACTAAGCGTCTTGTGCC 57.925 50.000 0.00 0.00 0.00 5.01
1574 1656 8.722480 TGTCCTACAATATTGAAGATTGTCTG 57.278 34.615 19.94 14.11 42.51 3.51
1612 1694 0.872881 GTGGCAAGTGCAAGCAAGTG 60.873 55.000 5.52 0.00 44.36 3.16
1730 1812 4.187694 GCTACAACCTGATTCAGAAGGAG 58.812 47.826 15.36 10.65 37.01 3.69
1810 1892 2.161012 CAGCGAGCAACATTGATGAAGT 59.839 45.455 0.00 0.00 0.00 3.01
1858 1940 9.569167 GCCCAAACAAGAGTTAATAAATCTTAC 57.431 33.333 14.23 0.00 36.84 2.34
2013 2099 4.991056 TCTCGCAGTCATTTATTAGGATGC 59.009 41.667 0.00 0.00 0.00 3.91
2032 2118 6.541641 AGGATGCAGTTTCTCAAAGATATGAC 59.458 38.462 0.00 0.00 0.00 3.06
2044 2130 6.158598 TCAAAGATATGACCAAAAAGCTTGC 58.841 36.000 0.00 0.00 0.00 4.01
2083 2177 1.990327 GGACTTACAAAGGAAGGGGGA 59.010 52.381 0.00 0.00 0.00 4.81
2092 2186 2.309504 GGAAGGGGGAGGGACAAGG 61.310 68.421 0.00 0.00 0.00 3.61
2112 2206 1.264288 GTGACCTCGCCAAGTTTCTTG 59.736 52.381 2.90 2.90 0.00 3.02
2125 2219 5.909610 CCAAGTTTCTTGAGAAAAAGCTACG 59.090 40.000 7.69 0.00 44.58 3.51
2163 2257 7.285401 AGTTTGTTGTTCTTGATGACTTATGGT 59.715 33.333 0.00 0.00 0.00 3.55
2286 2380 4.412528 AGAAGTGTACTTTGGGACCTTCTT 59.587 41.667 0.00 0.00 36.11 2.52
2287 2381 4.353383 AGTGTACTTTGGGACCTTCTTC 57.647 45.455 0.00 0.00 0.00 2.87
2288 2382 3.974642 AGTGTACTTTGGGACCTTCTTCT 59.025 43.478 0.00 0.00 0.00 2.85
2296 2390 3.028850 TGGGACCTTCTTCTATACCACG 58.971 50.000 0.00 0.00 0.00 4.94
2304 2398 7.285566 ACCTTCTTCTATACCACGTATCTACA 58.714 38.462 0.00 0.00 30.79 2.74
2306 2400 8.627403 CCTTCTTCTATACCACGTATCTACAAA 58.373 37.037 0.00 0.00 30.79 2.83
2349 2443 8.832521 CAAATGATGCCATAAATTTGCTATTGT 58.167 29.630 10.62 0.00 34.35 2.71
2392 2486 6.114089 AGGAAGACATGACAAATGATGAGAG 58.886 40.000 0.00 0.00 0.00 3.20
2520 2616 6.290605 CAAATGATTTATGACCAAATCCCCC 58.709 40.000 6.21 0.00 42.00 5.40
2633 2729 9.834628 TGTTTTCTGTATTTAAGCTTATTTCCG 57.165 29.630 7.08 0.00 0.00 4.30
2687 2783 1.971357 GAAAGATGGATAGCCGAGGGA 59.029 52.381 0.00 0.00 36.79 4.20
2690 2786 2.183679 AGATGGATAGCCGAGGGATTC 58.816 52.381 0.00 0.00 36.79 2.52
2742 2838 8.561738 TGAAGATGTTGGGAATAGTTACTTTC 57.438 34.615 0.00 0.00 0.00 2.62
2750 2846 8.451748 GTTGGGAATAGTTACTTTCATGAACTC 58.548 37.037 7.89 0.00 35.17 3.01
2775 2871 5.795972 TCAACCGTAGTATGATTCAACCAA 58.204 37.500 0.00 0.00 0.00 3.67
2781 2877 8.671028 ACCGTAGTATGATTCAACCAATAAAAC 58.329 33.333 0.00 0.00 0.00 2.43
2849 2945 6.442112 TGTTCGTGATGTCATGATCTCTATC 58.558 40.000 0.00 0.00 41.09 2.08
2878 2974 7.103641 AGAGATGAAAATTTTGCATGCTCAAT 58.896 30.769 20.33 13.58 0.00 2.57
2883 2979 7.104290 TGAAAATTTTGCATGCTCAATATGGA 58.896 30.769 20.33 0.00 0.00 3.41
2889 2985 6.964807 TTGCATGCTCAATATGGAATAAGT 57.035 33.333 20.33 0.00 32.08 2.24
2957 3053 2.970987 AGTTGGTGCCCAAATAAAGGT 58.029 42.857 8.06 0.00 45.73 3.50
3025 3121 3.056328 GAAGCCGGCACCTTCACC 61.056 66.667 31.54 3.90 38.78 4.02
3056 3152 5.843673 CTGACTTCAGGATGCTTAGAGTA 57.156 43.478 0.00 0.00 40.20 2.59
3076 3172 2.196742 TTGGATCTACAGGATGCCCT 57.803 50.000 0.00 0.00 45.74 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.515226 TCAGCTAAAAACCTAATATGTCACTTT 57.485 29.630 0.00 0.00 0.00 2.66
20 21 9.826574 AACGTATGATCAGCTAAAAACCTAATA 57.173 29.630 0.09 0.00 0.00 0.98
63 69 1.226542 CCATGATCAGGCAGCTGGT 59.773 57.895 17.12 0.00 0.00 4.00
104 110 9.762933 AAAAATAAAAGTGATCAGCTAAAAGCA 57.237 25.926 0.00 0.00 45.56 3.91
171 177 3.303990 GCTGAACGAAGCAAAGTGATCAA 60.304 43.478 0.00 0.00 43.01 2.57
187 193 1.609208 TCCTTTGAAGCAGGCTGAAC 58.391 50.000 20.86 8.80 0.00 3.18
213 220 5.815233 AGAGATGTACACTCATAATGGGG 57.185 43.478 20.38 0.00 36.91 4.96
215 222 9.823647 AGTTAAAGAGATGTACACTCATAATGG 57.176 33.333 20.38 0.00 36.91 3.16
223 230 9.021807 TGCTAGTTAGTTAAAGAGATGTACACT 57.978 33.333 0.00 0.00 0.00 3.55
234 241 6.183360 GGCTAAACCGTGCTAGTTAGTTAAAG 60.183 42.308 0.00 0.00 0.00 1.85
471 480 1.531058 GCCACGCGATTTTGGTACATC 60.531 52.381 15.93 0.00 39.30 3.06
486 495 4.409218 AGCTTTGCGCATGCCACG 62.409 61.111 25.42 5.71 42.61 4.94
488 497 2.344981 ATGAGCTTTGCGCATGCCA 61.345 52.632 25.42 22.44 46.31 4.92
489 498 2.493030 ATGAGCTTTGCGCATGCC 59.507 55.556 25.42 18.84 46.31 4.40
510 519 3.681034 GCAGAGATGAAAGCTTAGAGGCA 60.681 47.826 0.00 0.00 22.26 4.75
513 522 4.757594 ACTGCAGAGATGAAAGCTTAGAG 58.242 43.478 23.35 0.00 22.26 2.43
525 534 4.521146 CAAAACCATAGGACTGCAGAGAT 58.479 43.478 23.35 7.64 0.00 2.75
536 545 1.330521 CACGGATCGCAAAACCATAGG 59.669 52.381 0.00 0.00 0.00 2.57
554 563 1.405105 TCTTGTTGCAAAGCACCTCAC 59.595 47.619 0.00 0.00 38.71 3.51
578 587 0.250467 GCAGCTCTGGTTGTTCTCCA 60.250 55.000 0.00 0.00 0.00 3.86
591 600 4.082787 TGCCTAGTTGTTAATTTGCAGCTC 60.083 41.667 0.00 0.00 0.00 4.09
620 629 7.229106 AGTTACCAATGTGTATTACCGTGTTTT 59.771 33.333 0.00 0.00 0.00 2.43
624 633 9.531942 TTATAGTTACCAATGTGTATTACCGTG 57.468 33.333 0.00 0.00 0.00 4.94
630 639 9.109393 CACAGCTTATAGTTACCAATGTGTATT 57.891 33.333 0.00 0.00 32.82 1.89
667 676 7.595130 TCGATGTGAGCACAATAGATGTATAAC 59.405 37.037 7.46 0.00 45.41 1.89
676 685 3.928992 ACTTGTCGATGTGAGCACAATAG 59.071 43.478 7.46 2.70 45.41 1.73
684 693 5.292834 AGCAATGAATACTTGTCGATGTGAG 59.707 40.000 0.00 0.00 0.00 3.51
697 706 4.990257 AGTCATGTGCAAGCAATGAATAC 58.010 39.130 16.01 8.94 0.00 1.89
698 707 5.882000 AGTAGTCATGTGCAAGCAATGAATA 59.118 36.000 16.01 16.01 0.00 1.75
699 708 4.703575 AGTAGTCATGTGCAAGCAATGAAT 59.296 37.500 17.29 17.29 0.00 2.57
700 709 4.074259 AGTAGTCATGTGCAAGCAATGAA 58.926 39.130 16.01 5.24 0.00 2.57
701 710 3.678289 AGTAGTCATGTGCAAGCAATGA 58.322 40.909 12.57 12.57 0.00 2.57
702 711 5.550232 TTAGTAGTCATGTGCAAGCAATG 57.450 39.130 0.00 3.89 0.00 2.82
703 712 5.473162 TGTTTAGTAGTCATGTGCAAGCAAT 59.527 36.000 0.00 0.00 0.00 3.56
704 713 4.819088 TGTTTAGTAGTCATGTGCAAGCAA 59.181 37.500 0.00 0.00 0.00 3.91
705 714 4.213270 GTGTTTAGTAGTCATGTGCAAGCA 59.787 41.667 0.00 0.00 0.00 3.91
706 715 4.666655 CGTGTTTAGTAGTCATGTGCAAGC 60.667 45.833 0.00 0.00 0.00 4.01
707 716 4.666655 GCGTGTTTAGTAGTCATGTGCAAG 60.667 45.833 0.00 0.00 0.00 4.01
708 717 3.185594 GCGTGTTTAGTAGTCATGTGCAA 59.814 43.478 0.00 0.00 0.00 4.08
709 718 2.734606 GCGTGTTTAGTAGTCATGTGCA 59.265 45.455 0.00 0.00 0.00 4.57
710 719 2.222508 CGCGTGTTTAGTAGTCATGTGC 60.223 50.000 0.00 0.00 0.00 4.57
711 720 2.344441 CCGCGTGTTTAGTAGTCATGTG 59.656 50.000 4.92 0.00 0.00 3.21
712 721 2.602878 CCGCGTGTTTAGTAGTCATGT 58.397 47.619 4.92 0.00 0.00 3.21
713 722 1.323534 GCCGCGTGTTTAGTAGTCATG 59.676 52.381 4.92 0.00 0.00 3.07
714 723 1.067425 TGCCGCGTGTTTAGTAGTCAT 60.067 47.619 4.92 0.00 0.00 3.06
715 724 0.314618 TGCCGCGTGTTTAGTAGTCA 59.685 50.000 4.92 0.00 0.00 3.41
716 725 1.389106 CTTGCCGCGTGTTTAGTAGTC 59.611 52.381 4.92 0.00 0.00 2.59
717 726 1.000060 TCTTGCCGCGTGTTTAGTAGT 60.000 47.619 4.92 0.00 0.00 2.73
718 727 1.654105 CTCTTGCCGCGTGTTTAGTAG 59.346 52.381 4.92 0.00 0.00 2.57
719 728 1.000060 ACTCTTGCCGCGTGTTTAGTA 60.000 47.619 4.92 0.00 0.00 1.82
720 729 0.249741 ACTCTTGCCGCGTGTTTAGT 60.250 50.000 4.92 0.00 0.00 2.24
721 730 0.865769 AACTCTTGCCGCGTGTTTAG 59.134 50.000 4.92 0.00 0.00 1.85
722 731 0.584396 CAACTCTTGCCGCGTGTTTA 59.416 50.000 4.92 0.00 0.00 2.01
723 732 1.355210 CAACTCTTGCCGCGTGTTT 59.645 52.632 4.92 0.00 0.00 2.83
724 733 0.531090 TACAACTCTTGCCGCGTGTT 60.531 50.000 4.92 0.00 0.00 3.32
725 734 0.320421 ATACAACTCTTGCCGCGTGT 60.320 50.000 4.92 2.26 0.00 4.49
726 735 1.323534 GTATACAACTCTTGCCGCGTG 59.676 52.381 4.92 0.00 0.00 5.34
727 736 1.067425 TGTATACAACTCTTGCCGCGT 60.067 47.619 4.92 0.00 0.00 6.01
728 737 1.323534 GTGTATACAACTCTTGCCGCG 59.676 52.381 7.25 0.00 0.00 6.46
729 738 1.323534 CGTGTATACAACTCTTGCCGC 59.676 52.381 7.25 0.00 0.00 6.53
730 739 2.602878 ACGTGTATACAACTCTTGCCG 58.397 47.619 7.25 6.90 0.00 5.69
731 740 4.741342 AGTACGTGTATACAACTCTTGCC 58.259 43.478 7.25 0.00 0.00 4.52
732 741 7.982371 ATAAGTACGTGTATACAACTCTTGC 57.018 36.000 7.25 0.00 0.00 4.01
733 742 8.804743 CCAATAAGTACGTGTATACAACTCTTG 58.195 37.037 7.25 13.33 0.00 3.02
734 743 8.742777 TCCAATAAGTACGTGTATACAACTCTT 58.257 33.333 7.25 11.78 0.00 2.85
735 744 8.284945 TCCAATAAGTACGTGTATACAACTCT 57.715 34.615 7.25 1.60 0.00 3.24
736 745 8.186821 ACTCCAATAAGTACGTGTATACAACTC 58.813 37.037 7.25 0.00 0.00 3.01
737 746 8.059798 ACTCCAATAAGTACGTGTATACAACT 57.940 34.615 7.25 4.98 0.00 3.16
738 747 9.787532 TTACTCCAATAAGTACGTGTATACAAC 57.212 33.333 7.25 2.45 31.57 3.32
740 749 8.623903 CCTTACTCCAATAAGTACGTGTATACA 58.376 37.037 0.08 0.08 31.57 2.29
741 750 8.624776 ACCTTACTCCAATAAGTACGTGTATAC 58.375 37.037 0.00 0.00 31.57 1.47
742 751 8.752005 ACCTTACTCCAATAAGTACGTGTATA 57.248 34.615 0.00 0.00 31.57 1.47
743 752 7.651027 ACCTTACTCCAATAAGTACGTGTAT 57.349 36.000 0.00 0.00 31.57 2.29
744 753 7.176515 TCAACCTTACTCCAATAAGTACGTGTA 59.823 37.037 0.00 0.00 31.57 2.90
745 754 5.990120 ACCTTACTCCAATAAGTACGTGT 57.010 39.130 0.00 0.00 31.57 4.49
746 755 6.392354 TCAACCTTACTCCAATAAGTACGTG 58.608 40.000 0.00 0.00 31.57 4.49
747 756 6.594788 TCAACCTTACTCCAATAAGTACGT 57.405 37.500 0.00 0.00 31.57 3.57
748 757 7.262772 TGATCAACCTTACTCCAATAAGTACG 58.737 38.462 0.00 0.00 31.57 3.67
749 758 9.614792 ATTGATCAACCTTACTCCAATAAGTAC 57.385 33.333 11.07 0.00 31.57 2.73
763 772 8.190784 CGGAGCTTAATTTAATTGATCAACCTT 58.809 33.333 11.07 4.87 0.00 3.50
764 773 7.556275 TCGGAGCTTAATTTAATTGATCAACCT 59.444 33.333 11.07 3.64 0.00 3.50
765 774 7.703328 TCGGAGCTTAATTTAATTGATCAACC 58.297 34.615 11.07 1.61 0.00 3.77
766 775 9.736023 ATTCGGAGCTTAATTTAATTGATCAAC 57.264 29.630 11.07 0.00 0.00 3.18
768 777 9.734620 CAATTCGGAGCTTAATTTAATTGATCA 57.265 29.630 0.00 0.00 35.76 2.92
769 778 8.694394 GCAATTCGGAGCTTAATTTAATTGATC 58.306 33.333 15.80 0.00 35.76 2.92
770 779 8.416329 AGCAATTCGGAGCTTAATTTAATTGAT 58.584 29.630 15.80 10.28 38.01 2.57
771 780 7.771183 AGCAATTCGGAGCTTAATTTAATTGA 58.229 30.769 15.80 0.00 38.01 2.57
772 781 7.992180 AGCAATTCGGAGCTTAATTTAATTG 57.008 32.000 0.00 0.00 38.01 2.32
773 782 7.862873 GCTAGCAATTCGGAGCTTAATTTAATT 59.137 33.333 10.63 0.00 42.05 1.40
774 783 7.363431 GCTAGCAATTCGGAGCTTAATTTAAT 58.637 34.615 10.63 0.00 42.05 1.40
775 784 6.238648 GGCTAGCAATTCGGAGCTTAATTTAA 60.239 38.462 18.24 0.00 42.05 1.52
776 785 5.238650 GGCTAGCAATTCGGAGCTTAATTTA 59.761 40.000 18.24 0.00 42.05 1.40
777 786 4.036852 GGCTAGCAATTCGGAGCTTAATTT 59.963 41.667 18.24 0.00 42.05 1.82
778 787 3.565902 GGCTAGCAATTCGGAGCTTAATT 59.434 43.478 18.24 0.00 42.05 1.40
779 788 3.142174 GGCTAGCAATTCGGAGCTTAAT 58.858 45.455 18.24 0.00 42.05 1.40
780 789 2.561569 GGCTAGCAATTCGGAGCTTAA 58.438 47.619 18.24 0.00 42.05 1.85
781 790 1.202651 GGGCTAGCAATTCGGAGCTTA 60.203 52.381 18.24 0.00 42.05 3.09
782 791 0.464554 GGGCTAGCAATTCGGAGCTT 60.465 55.000 18.24 0.00 42.05 3.74
783 792 1.147153 GGGCTAGCAATTCGGAGCT 59.853 57.895 18.24 0.00 44.55 4.09
784 793 1.894282 GGGGCTAGCAATTCGGAGC 60.894 63.158 18.24 0.00 0.00 4.70
785 794 0.181350 AAGGGGCTAGCAATTCGGAG 59.819 55.000 18.24 0.00 0.00 4.63
786 795 0.107214 CAAGGGGCTAGCAATTCGGA 60.107 55.000 18.24 0.00 0.00 4.55
787 796 1.103398 CCAAGGGGCTAGCAATTCGG 61.103 60.000 18.24 7.19 0.00 4.30
788 797 2.408333 CCAAGGGGCTAGCAATTCG 58.592 57.895 18.24 1.23 0.00 3.34
806 815 1.599542 GAAGTCCATCGGCTAACATGC 59.400 52.381 0.00 0.00 0.00 4.06
807 816 2.609459 GTGAAGTCCATCGGCTAACATG 59.391 50.000 0.00 0.00 0.00 3.21
808 817 2.738643 CGTGAAGTCCATCGGCTAACAT 60.739 50.000 0.00 0.00 0.00 2.71
809 818 1.403647 CGTGAAGTCCATCGGCTAACA 60.404 52.381 0.00 0.00 0.00 2.41
810 819 1.278238 CGTGAAGTCCATCGGCTAAC 58.722 55.000 0.00 0.00 0.00 2.34
811 820 0.892755 ACGTGAAGTCCATCGGCTAA 59.107 50.000 0.00 0.00 0.00 3.09
812 821 0.172578 CACGTGAAGTCCATCGGCTA 59.827 55.000 10.90 0.00 0.00 3.93
813 822 1.079819 CACGTGAAGTCCATCGGCT 60.080 57.895 10.90 0.00 0.00 5.52
814 823 1.374252 ACACGTGAAGTCCATCGGC 60.374 57.895 25.01 0.00 0.00 5.54
815 824 0.319555 ACACACGTGAAGTCCATCGG 60.320 55.000 25.01 0.82 0.00 4.18
816 825 0.784178 CACACACGTGAAGTCCATCG 59.216 55.000 25.01 4.36 46.80 3.84
817 826 0.512952 GCACACACGTGAAGTCCATC 59.487 55.000 25.01 5.59 46.80 3.51
818 827 0.179059 TGCACACACGTGAAGTCCAT 60.179 50.000 25.01 0.00 46.80 3.41
819 828 1.087202 GTGCACACACGTGAAGTCCA 61.087 55.000 25.01 13.76 46.80 4.02
820 829 1.641677 GTGCACACACGTGAAGTCC 59.358 57.895 25.01 11.12 46.80 3.85
835 844 0.038526 AGAAGCTGCTTGCAATGTGC 60.039 50.000 21.25 0.00 45.94 4.57
836 845 1.728179 CGAGAAGCTGCTTGCAATGTG 60.728 52.381 21.25 0.00 45.94 3.21
837 846 0.520404 CGAGAAGCTGCTTGCAATGT 59.480 50.000 21.25 0.00 45.94 2.71
838 847 0.520404 ACGAGAAGCTGCTTGCAATG 59.480 50.000 21.25 7.32 45.94 2.82
839 848 0.520404 CACGAGAAGCTGCTTGCAAT 59.480 50.000 21.25 2.59 45.94 3.56
840 849 0.815213 ACACGAGAAGCTGCTTGCAA 60.815 50.000 21.25 0.00 45.94 4.08
841 850 0.033366 TACACGAGAAGCTGCTTGCA 59.967 50.000 21.25 0.00 45.94 4.08
842 851 0.440371 GTACACGAGAAGCTGCTTGC 59.560 55.000 21.25 10.48 43.29 4.01
843 852 1.457303 GTGTACACGAGAAGCTGCTTG 59.543 52.381 21.25 7.50 0.00 4.01
844 853 1.341531 AGTGTACACGAGAAGCTGCTT 59.658 47.619 19.93 15.92 36.20 3.91
845 854 0.962489 AGTGTACACGAGAAGCTGCT 59.038 50.000 19.93 0.00 36.20 4.24
846 855 1.063806 CAGTGTACACGAGAAGCTGC 58.936 55.000 19.93 0.00 36.20 5.25
847 856 1.063806 GCAGTGTACACGAGAAGCTG 58.936 55.000 19.93 11.90 36.20 4.24
848 857 0.962489 AGCAGTGTACACGAGAAGCT 59.038 50.000 19.93 19.74 36.20 3.74
849 858 1.068194 AGAGCAGTGTACACGAGAAGC 60.068 52.381 19.93 18.07 36.20 3.86
850 859 2.999507 AGAGCAGTGTACACGAGAAG 57.000 50.000 19.93 10.05 36.20 2.85
851 860 4.007659 TCATAGAGCAGTGTACACGAGAA 58.992 43.478 19.93 5.90 36.20 2.87
852 861 3.606687 TCATAGAGCAGTGTACACGAGA 58.393 45.455 19.93 7.75 36.20 4.04
853 862 4.357018 TTCATAGAGCAGTGTACACGAG 57.643 45.455 19.93 17.01 36.20 4.18
854 863 4.776795 TTTCATAGAGCAGTGTACACGA 57.223 40.909 19.93 6.14 36.20 4.35
855 864 5.005779 GGATTTTCATAGAGCAGTGTACACG 59.994 44.000 19.93 15.36 36.20 4.49
856 865 5.294552 GGGATTTTCATAGAGCAGTGTACAC 59.705 44.000 18.56 18.56 0.00 2.90
857 866 5.428253 GGGATTTTCATAGAGCAGTGTACA 58.572 41.667 0.00 0.00 0.00 2.90
858 867 4.816925 GGGGATTTTCATAGAGCAGTGTAC 59.183 45.833 0.00 0.00 0.00 2.90
859 868 4.442893 CGGGGATTTTCATAGAGCAGTGTA 60.443 45.833 0.00 0.00 0.00 2.90
860 869 3.682718 CGGGGATTTTCATAGAGCAGTGT 60.683 47.826 0.00 0.00 0.00 3.55
861 870 2.874701 CGGGGATTTTCATAGAGCAGTG 59.125 50.000 0.00 0.00 0.00 3.66
862 871 2.158755 CCGGGGATTTTCATAGAGCAGT 60.159 50.000 0.00 0.00 0.00 4.40
863 872 2.498167 CCGGGGATTTTCATAGAGCAG 58.502 52.381 0.00 0.00 0.00 4.24
864 873 1.142870 CCCGGGGATTTTCATAGAGCA 59.857 52.381 14.71 0.00 0.00 4.26
865 874 1.897560 CCCGGGGATTTTCATAGAGC 58.102 55.000 14.71 0.00 0.00 4.09
866 875 1.421646 AGCCCGGGGATTTTCATAGAG 59.578 52.381 25.28 0.00 0.00 2.43
867 876 1.518367 AGCCCGGGGATTTTCATAGA 58.482 50.000 25.28 0.00 0.00 1.98
868 877 1.956477 CAAGCCCGGGGATTTTCATAG 59.044 52.381 25.28 0.00 0.00 2.23
869 878 2.026905 GCAAGCCCGGGGATTTTCATA 61.027 52.381 25.28 0.00 0.00 2.15
870 879 1.329913 GCAAGCCCGGGGATTTTCAT 61.330 55.000 25.28 0.00 0.00 2.57
871 880 1.981853 GCAAGCCCGGGGATTTTCA 60.982 57.895 25.28 0.00 0.00 2.69
872 881 2.721167 GGCAAGCCCGGGGATTTTC 61.721 63.158 25.28 10.86 0.00 2.29
873 882 2.683572 GGCAAGCCCGGGGATTTT 60.684 61.111 25.28 4.56 0.00 1.82
883 892 1.067669 GCTGCTTTTATAGGGCAAGCC 59.932 52.381 1.52 1.52 41.97 4.35
884 893 1.750778 TGCTGCTTTTATAGGGCAAGC 59.249 47.619 0.00 0.00 42.81 4.01
885 894 2.099756 GGTGCTGCTTTTATAGGGCAAG 59.900 50.000 0.00 0.00 35.49 4.01
886 895 2.099405 GGTGCTGCTTTTATAGGGCAA 58.901 47.619 0.00 0.00 35.49 4.52
887 896 1.762708 GGTGCTGCTTTTATAGGGCA 58.237 50.000 0.00 0.00 34.66 5.36
888 897 0.663153 CGGTGCTGCTTTTATAGGGC 59.337 55.000 0.00 0.00 0.00 5.19
889 898 0.663153 GCGGTGCTGCTTTTATAGGG 59.337 55.000 0.00 0.00 0.00 3.53
890 899 1.331756 CTGCGGTGCTGCTTTTATAGG 59.668 52.381 0.00 0.00 35.36 2.57
891 900 2.744787 CTGCGGTGCTGCTTTTATAG 57.255 50.000 0.00 0.00 35.36 1.31
906 915 2.541120 GCTCCCAATGCTAGCTGCG 61.541 63.158 17.23 3.57 46.63 5.18
907 916 1.153005 AGCTCCCAATGCTAGCTGC 60.153 57.895 17.23 8.54 44.67 5.25
910 919 0.179936 AGTGAGCTCCCAATGCTAGC 59.820 55.000 12.15 8.10 41.30 3.42
919 928 3.342377 AGCTAAGAAAAGTGAGCTCCC 57.658 47.619 12.15 0.00 41.40 4.30
923 932 4.068599 ACAAGGAGCTAAGAAAAGTGAGC 58.931 43.478 0.00 0.00 35.07 4.26
943 952 1.611977 CTGGAGGTGTTGACGAGTACA 59.388 52.381 0.00 0.00 0.00 2.90
944 953 1.669211 GCTGGAGGTGTTGACGAGTAC 60.669 57.143 0.00 0.00 0.00 2.73
970 979 1.652167 GACCCTCTCACGACCGGTAC 61.652 65.000 7.34 0.00 0.00 3.34
971 980 1.377725 GACCCTCTCACGACCGGTA 60.378 63.158 7.34 0.00 0.00 4.02
973 982 0.750546 TATGACCCTCTCACGACCGG 60.751 60.000 0.00 0.00 0.00 5.28
991 1000 5.422145 CATCATATCAGGCATGTTCGGATA 58.578 41.667 0.00 11.09 0.00 2.59
1113 1122 4.100963 TGAACATACCAGATATCCTTGCGT 59.899 41.667 0.00 0.00 0.00 5.24
1144 1153 5.900339 TCGTCATGACTGTAACAAAAGAC 57.100 39.130 22.95 0.00 0.00 3.01
1154 1163 1.691976 TGGGAAGTTCGTCATGACTGT 59.308 47.619 22.95 4.02 0.00 3.55
1155 1164 2.069273 GTGGGAAGTTCGTCATGACTG 58.931 52.381 22.95 16.06 0.00 3.51
1156 1165 1.336887 CGTGGGAAGTTCGTCATGACT 60.337 52.381 22.95 4.18 0.00 3.41
1158 1167 0.037697 CCGTGGGAAGTTCGTCATGA 60.038 55.000 14.74 0.00 0.00 3.07
1163 1172 1.590147 CTAGCCGTGGGAAGTTCGT 59.410 57.895 0.00 0.00 0.00 3.85
1164 1173 1.810030 GCTAGCCGTGGGAAGTTCG 60.810 63.158 2.29 0.00 0.00 3.95
1165 1174 1.449778 GGCTAGCCGTGGGAAGTTC 60.450 63.158 20.16 0.00 0.00 3.01
1166 1175 1.489560 AAGGCTAGCCGTGGGAAGTT 61.490 55.000 27.83 11.35 41.95 2.66
1167 1176 1.489560 AAAGGCTAGCCGTGGGAAGT 61.490 55.000 27.83 5.77 41.95 3.01
1169 1178 0.985760 TAAAAGGCTAGCCGTGGGAA 59.014 50.000 27.83 10.06 41.95 3.97
1170 1179 0.251073 GTAAAAGGCTAGCCGTGGGA 59.749 55.000 27.83 10.92 41.95 4.37
1171 1180 0.035820 TGTAAAAGGCTAGCCGTGGG 60.036 55.000 27.83 0.00 41.95 4.61
1173 1182 2.354821 GGAATGTAAAAGGCTAGCCGTG 59.645 50.000 27.83 0.00 41.95 4.94
1174 1183 2.238898 AGGAATGTAAAAGGCTAGCCGT 59.761 45.455 27.83 22.79 41.95 5.68
1176 1185 5.470437 GTGATAGGAATGTAAAAGGCTAGCC 59.530 44.000 27.19 27.19 0.00 3.93
1177 1186 5.177696 CGTGATAGGAATGTAAAAGGCTAGC 59.822 44.000 6.04 6.04 0.00 3.42
1180 1189 5.353394 TCGTGATAGGAATGTAAAAGGCT 57.647 39.130 0.00 0.00 0.00 4.58
1183 1192 8.169268 GTCAGTTTCGTGATAGGAATGTAAAAG 58.831 37.037 0.00 0.00 0.00 2.27
1184 1193 7.658167 TGTCAGTTTCGTGATAGGAATGTAAAA 59.342 33.333 0.00 0.00 0.00 1.52
1185 1194 7.156000 TGTCAGTTTCGTGATAGGAATGTAAA 58.844 34.615 0.00 0.00 0.00 2.01
1186 1195 6.693466 TGTCAGTTTCGTGATAGGAATGTAA 58.307 36.000 0.00 0.00 0.00 2.41
1188 1197 5.147330 TGTCAGTTTCGTGATAGGAATGT 57.853 39.130 0.00 0.00 0.00 2.71
1190 1199 5.104941 TGGATGTCAGTTTCGTGATAGGAAT 60.105 40.000 0.00 0.00 0.00 3.01
1191 1200 4.221924 TGGATGTCAGTTTCGTGATAGGAA 59.778 41.667 0.00 0.00 0.00 3.36
1192 1201 3.767131 TGGATGTCAGTTTCGTGATAGGA 59.233 43.478 0.00 0.00 0.00 2.94
1193 1202 4.123497 TGGATGTCAGTTTCGTGATAGG 57.877 45.455 0.00 0.00 0.00 2.57
1194 1203 7.116948 GGATATTGGATGTCAGTTTCGTGATAG 59.883 40.741 0.00 0.00 0.00 2.08
1195 1204 6.929049 GGATATTGGATGTCAGTTTCGTGATA 59.071 38.462 0.00 0.00 0.00 2.15
1196 1205 5.760253 GGATATTGGATGTCAGTTTCGTGAT 59.240 40.000 0.00 0.00 0.00 3.06
1197 1206 5.116180 GGATATTGGATGTCAGTTTCGTGA 58.884 41.667 0.00 0.00 0.00 4.35
1198 1207 4.273480 GGGATATTGGATGTCAGTTTCGTG 59.727 45.833 0.00 0.00 0.00 4.35
1199 1208 4.164221 AGGGATATTGGATGTCAGTTTCGT 59.836 41.667 0.00 0.00 0.00 3.85
1200 1209 4.708177 AGGGATATTGGATGTCAGTTTCG 58.292 43.478 0.00 0.00 0.00 3.46
1201 1210 7.410120 AAAAGGGATATTGGATGTCAGTTTC 57.590 36.000 0.00 0.00 0.00 2.78
1202 1211 7.675619 AGAAAAAGGGATATTGGATGTCAGTTT 59.324 33.333 0.00 0.00 0.00 2.66
1203 1212 7.123247 CAGAAAAAGGGATATTGGATGTCAGTT 59.877 37.037 0.00 0.00 0.00 3.16
1204 1213 6.604795 CAGAAAAAGGGATATTGGATGTCAGT 59.395 38.462 0.00 0.00 0.00 3.41
1205 1214 6.604795 ACAGAAAAAGGGATATTGGATGTCAG 59.395 38.462 0.00 0.00 0.00 3.51
1206 1215 6.493166 ACAGAAAAAGGGATATTGGATGTCA 58.507 36.000 0.00 0.00 0.00 3.58
1207 1216 7.410120 AACAGAAAAAGGGATATTGGATGTC 57.590 36.000 0.00 0.00 0.00 3.06
1208 1217 8.893563 TTAACAGAAAAAGGGATATTGGATGT 57.106 30.769 0.00 0.00 0.00 3.06
1211 1220 9.374711 AGTTTTAACAGAAAAAGGGATATTGGA 57.625 29.630 0.00 0.00 0.00 3.53
1212 1221 9.996554 AAGTTTTAACAGAAAAAGGGATATTGG 57.003 29.630 0.00 0.00 0.00 3.16
1219 1228 9.309516 GGACTTAAAGTTTTAACAGAAAAAGGG 57.690 33.333 0.00 0.00 0.00 3.95
1220 1229 9.309516 GGGACTTAAAGTTTTAACAGAAAAAGG 57.690 33.333 0.00 0.00 0.00 3.11
1244 1253 1.138069 GGTGTTCACCCAACAAAAGGG 59.862 52.381 10.56 0.00 46.90 3.95
1245 1254 1.202359 CGGTGTTCACCCAACAAAAGG 60.202 52.381 15.20 0.00 46.90 3.11
1246 1255 1.202359 CCGGTGTTCACCCAACAAAAG 60.202 52.381 15.20 0.38 46.90 2.27
1247 1256 0.818296 CCGGTGTTCACCCAACAAAA 59.182 50.000 15.20 0.00 46.90 2.44
1250 1259 0.183971 AATCCGGTGTTCACCCAACA 59.816 50.000 15.20 0.00 43.12 3.33
1251 1260 0.596082 CAATCCGGTGTTCACCCAAC 59.404 55.000 15.20 0.00 35.28 3.77
1252 1261 0.474614 TCAATCCGGTGTTCACCCAA 59.525 50.000 15.20 5.15 0.00 4.12
1253 1262 0.695924 ATCAATCCGGTGTTCACCCA 59.304 50.000 15.20 3.94 0.00 4.51
1254 1263 2.702592 TATCAATCCGGTGTTCACCC 57.297 50.000 15.20 0.00 0.00 4.61
1255 1264 4.073293 AGATATCAATCCGGTGTTCACC 57.927 45.455 11.53 11.53 31.98 4.02
1256 1265 7.576236 CATTAAGATATCAATCCGGTGTTCAC 58.424 38.462 0.00 0.00 31.98 3.18
1257 1266 6.204688 GCATTAAGATATCAATCCGGTGTTCA 59.795 38.462 0.00 0.00 31.98 3.18
1258 1267 6.428159 AGCATTAAGATATCAATCCGGTGTTC 59.572 38.462 0.00 0.00 31.98 3.18
1259 1268 6.299141 AGCATTAAGATATCAATCCGGTGTT 58.701 36.000 0.00 0.00 31.98 3.32
1260 1269 5.869579 AGCATTAAGATATCAATCCGGTGT 58.130 37.500 0.00 0.00 31.98 4.16
1261 1270 5.062683 CGAGCATTAAGATATCAATCCGGTG 59.937 44.000 0.00 0.00 31.98 4.94
1262 1271 5.171476 CGAGCATTAAGATATCAATCCGGT 58.829 41.667 0.00 0.00 31.98 5.28
1263 1272 5.062683 CACGAGCATTAAGATATCAATCCGG 59.937 44.000 5.32 0.00 31.98 5.14
1264 1273 5.863935 TCACGAGCATTAAGATATCAATCCG 59.136 40.000 5.32 3.64 31.98 4.18
1265 1274 7.658179 TTCACGAGCATTAAGATATCAATCC 57.342 36.000 5.32 0.00 31.98 3.01
1266 1275 9.935682 TTTTTCACGAGCATTAAGATATCAATC 57.064 29.630 5.32 0.00 0.00 2.67
1267 1276 9.941664 CTTTTTCACGAGCATTAAGATATCAAT 57.058 29.630 5.32 0.00 0.00 2.57
1268 1277 9.161629 TCTTTTTCACGAGCATTAAGATATCAA 57.838 29.630 5.32 0.00 0.00 2.57
1269 1278 8.716646 TCTTTTTCACGAGCATTAAGATATCA 57.283 30.769 5.32 0.00 0.00 2.15
1270 1279 9.988350 TTTCTTTTTCACGAGCATTAAGATATC 57.012 29.630 0.00 0.00 0.00 1.63
1328 1337 6.867662 ATCAATACTTGGTGCTAGCATAAC 57.132 37.500 22.51 14.72 0.00 1.89
1334 1343 5.220710 AGCCTATCAATACTTGGTGCTAG 57.779 43.478 0.00 0.00 0.00 3.42
1335 1344 5.368145 CAAGCCTATCAATACTTGGTGCTA 58.632 41.667 0.00 0.00 36.67 3.49
1336 1345 4.202441 CAAGCCTATCAATACTTGGTGCT 58.798 43.478 0.00 0.00 36.67 4.40
1360 1372 3.807538 GCTCCATGCGTGCAGGTG 61.808 66.667 8.40 6.84 0.00 4.00
1394 1406 3.877508 GCTTAGTACATTCCCGCAGATTT 59.122 43.478 0.00 0.00 0.00 2.17
1420 1432 1.646189 GCCAAACGAAAAAGGCACAA 58.354 45.000 0.00 0.00 46.26 3.33
1426 1438 3.157932 TGAACCTGCCAAACGAAAAAG 57.842 42.857 0.00 0.00 0.00 2.27
1574 1656 0.819582 CATGCACCAGGAATTCACCC 59.180 55.000 7.93 0.00 0.00 4.61
1612 1694 0.729690 GAGCTTCATCAACTTCCGCC 59.270 55.000 0.00 0.00 0.00 6.13
1730 1812 5.851720 TCATCAATGGCTCTAGTGATCTTC 58.148 41.667 0.00 0.00 33.55 2.87
1810 1892 2.821437 TGGAAAACCCCACAAGTTCAA 58.179 42.857 0.00 0.00 0.00 2.69
1858 1940 2.608506 CCATTGTTGTCATGCACACCAG 60.609 50.000 0.00 0.00 33.41 4.00
1861 1943 2.607771 GGTCCATTGTTGTCATGCACAC 60.608 50.000 0.00 0.00 33.41 3.82
2013 2099 9.403110 CTTTTTGGTCATATCTTTGAGAAACTG 57.597 33.333 0.00 0.00 0.00 3.16
2044 2130 4.349342 AGTCCTCCATTTCATTAGGGCTAG 59.651 45.833 0.00 0.00 42.22 3.42
2054 2140 5.576563 TCCTTTGTAAGTCCTCCATTTCA 57.423 39.130 0.00 0.00 0.00 2.69
2058 2144 3.267031 CCCTTCCTTTGTAAGTCCTCCAT 59.733 47.826 0.00 0.00 0.00 3.41
2083 2177 2.584391 GCGAGGTCACCTTGTCCCT 61.584 63.158 13.12 0.00 37.36 4.20
2092 2186 1.264288 CAAGAAACTTGGCGAGGTCAC 59.736 52.381 6.71 0.00 0.00 3.67
2112 2206 4.170256 CTCTCCTCACGTAGCTTTTTCTC 58.830 47.826 0.00 0.00 0.00 2.87
2125 2219 4.338379 ACAACAAACTACCTCTCCTCAC 57.662 45.455 0.00 0.00 0.00 3.51
2138 2232 7.425606 ACCATAAGTCATCAAGAACAACAAAC 58.574 34.615 0.00 0.00 0.00 2.93
2163 2257 5.665360 TGATCCAGTCCCAGTCATTTATGTA 59.335 40.000 0.00 0.00 0.00 2.29
2178 2272 8.041323 TGGAAAAATAGTAGTTCTGATCCAGTC 58.959 37.037 0.00 0.00 32.61 3.51
2251 2345 5.331876 AGTACACTTCTTAGCTAAGCCAG 57.668 43.478 25.83 23.60 33.40 4.85
2286 2380 8.454570 TGATGTTTGTAGATACGTGGTATAGA 57.545 34.615 0.00 0.00 0.00 1.98
2287 2381 8.965172 GTTGATGTTTGTAGATACGTGGTATAG 58.035 37.037 0.00 0.00 0.00 1.31
2288 2382 7.922278 GGTTGATGTTTGTAGATACGTGGTATA 59.078 37.037 0.00 0.00 0.00 1.47
2296 2390 7.120923 TCTAGGGGTTGATGTTTGTAGATAC 57.879 40.000 0.00 0.00 0.00 2.24
2304 2398 6.553100 TCATTTGTTTCTAGGGGTTGATGTTT 59.447 34.615 0.00 0.00 0.00 2.83
2306 2400 5.640147 TCATTTGTTTCTAGGGGTTGATGT 58.360 37.500 0.00 0.00 0.00 3.06
2349 2443 4.489737 TCCTCACTTTTCCTAGTCTTCCA 58.510 43.478 0.00 0.00 0.00 3.53
2392 2486 9.202273 CTATCTTAGTGACTATTTTCCTCATGC 57.798 37.037 0.00 0.00 0.00 4.06
2445 2539 5.645497 GCATGCCTCCTATTGTAAGAATAGG 59.355 44.000 6.36 13.96 46.75 2.57
2535 2631 6.337356 TCTTCATTGGTTCAAGGTTTTTGTC 58.663 36.000 0.00 0.00 0.00 3.18
2742 2838 6.273071 TCATACTACGGTTGATGAGTTCATG 58.727 40.000 0.00 0.00 36.57 3.07
2750 2846 5.815222 TGGTTGAATCATACTACGGTTGATG 59.185 40.000 0.00 0.00 30.76 3.07
2781 2877 7.307692 GCTCTTCACTTTTCCTTCTAAGTTCAG 60.308 40.741 0.00 0.00 32.50 3.02
2787 2883 5.930135 ACAGCTCTTCACTTTTCCTTCTAA 58.070 37.500 0.00 0.00 0.00 2.10
2798 2894 1.957177 TGAACTCGACAGCTCTTCACT 59.043 47.619 0.00 0.00 0.00 3.41
2849 2945 7.033791 AGCATGCAAAATTTTCATCTCTACAG 58.966 34.615 21.98 0.00 0.00 2.74
2878 2974 6.070481 TGCTACACCAGTTGACTTATTCCATA 60.070 38.462 0.00 0.00 0.00 2.74
2883 2979 4.286032 TCCTGCTACACCAGTTGACTTATT 59.714 41.667 0.00 0.00 0.00 1.40
2889 2985 2.009681 TCTCCTGCTACACCAGTTGA 57.990 50.000 0.00 0.00 0.00 3.18
2957 3053 1.851304 GGACATGGCTCCAATCCAAA 58.149 50.000 14.40 0.00 37.13 3.28
3056 3152 2.711174 AGGGCATCCTGTAGATCCAAT 58.289 47.619 0.00 0.00 42.98 3.16
3083 3179 4.009675 TGCTGATATCCTTTTGTGTCACC 58.990 43.478 0.00 0.00 0.00 4.02
3095 3191 4.017808 ACGACCCTATAGTGCTGATATCC 58.982 47.826 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.