Multiple sequence alignment - TraesCS7D01G035200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G035200 chr7D 100.000 5600 0 0 1 5600 18093221 18098820 0.000000e+00 10342
1 TraesCS7D01G035200 chr7D 82.438 894 149 5 3117 4003 17849587 17850479 0.000000e+00 774
2 TraesCS7D01G035200 chr7D 83.255 424 62 5 1107 1527 17847869 17848286 1.140000e-101 381
3 TraesCS7D01G035200 chr7D 81.713 432 76 3 4100 4529 17860712 17861142 1.920000e-94 357
4 TraesCS7D01G035200 chr7A 95.670 2702 90 14 2908 5600 18571741 18569058 0.000000e+00 4316
5 TraesCS7D01G035200 chr7A 95.136 1953 79 8 560 2511 18574196 18572259 0.000000e+00 3066
6 TraesCS7D01G035200 chr7A 92.630 1289 67 8 4320 5600 17835756 17837024 0.000000e+00 1829
7 TraesCS7D01G035200 chr7A 83.430 863 137 6 3142 4001 17329248 17330107 0.000000e+00 797
8 TraesCS7D01G035200 chr7A 87.654 567 38 13 1 564 18574901 18574364 1.020000e-176 630
9 TraesCS7D01G035200 chr7A 85.941 441 53 2 4099 4530 17338261 17338701 3.950000e-126 462
10 TraesCS7D01G035200 chr7A 85.714 406 38 8 2510 2914 18572177 18571791 1.450000e-110 411
11 TraesCS7D01G035200 chr7A 82.663 398 65 4 1103 1498 17335407 17335802 3.210000e-92 350
12 TraesCS7D01G035200 chr4A 92.321 2370 150 7 3171 5533 714743300 714740956 0.000000e+00 3339
13 TraesCS7D01G035200 chr4A 91.852 1890 96 11 560 2448 714746364 714744532 0.000000e+00 2584
14 TraesCS7D01G035200 chr4A 83.222 900 141 7 3115 4009 715745377 715744483 0.000000e+00 817
15 TraesCS7D01G035200 chr4A 83.584 865 138 4 3141 4003 715817715 715818577 0.000000e+00 808
16 TraesCS7D01G035200 chr4A 83.995 831 133 0 3153 3983 715809474 715810304 0.000000e+00 798
17 TraesCS7D01G035200 chr4A 82.333 900 151 5 3117 4009 715752494 715751596 0.000000e+00 774
18 TraesCS7D01G035200 chr4A 78.291 714 123 17 4098 4785 714917841 714917134 1.110000e-116 431
19 TraesCS7D01G035200 chr4A 85.012 407 37 12 2510 2914 714744410 714744026 5.260000e-105 392
20 TraesCS7D01G035200 chr4A 82.783 424 64 5 1107 1527 715754223 715753806 2.460000e-98 370
21 TraesCS7D01G035200 chr4A 81.336 434 78 2 4093 4523 715744279 715743846 3.210000e-92 350
22 TraesCS7D01G035200 chr4A 81.176 425 80 0 1093 1517 715816191 715816615 5.370000e-90 342
23 TraesCS7D01G035200 chr4A 80.861 418 76 4 1112 1527 714920414 714919999 5.410000e-85 326
24 TraesCS7D01G035200 chr4A 84.052 232 37 0 1885 2116 715804126 715803895 2.030000e-54 224
25 TraesCS7D01G035200 chr4A 95.789 95 3 1 3080 3173 714743732 714743638 9.720000e-33 152
26 TraesCS7D01G035200 chrUn 92.278 2370 151 7 3171 5533 321395162 321392818 0.000000e+00 3334
27 TraesCS7D01G035200 chrUn 89.561 1207 68 11 560 1765 417025344 417024195 0.000000e+00 1478
28 TraesCS7D01G035200 chrUn 78.151 714 124 17 4098 4785 277338861 277339568 5.190000e-115 425
29 TraesCS7D01G035200 chrUn 81.100 418 75 4 1112 1527 307164172 307164587 1.160000e-86 331
30 TraesCS7D01G035200 chrUn 95.789 95 3 1 3080 3173 461112367 461112461 9.720000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G035200 chr7D 18093221 18098820 5599 False 10342.00 10342 100.0000 1 5600 1 chr7D.!!$F2 5599
1 TraesCS7D01G035200 chr7D 17847869 17850479 2610 False 577.50 774 82.8465 1107 4003 2 chr7D.!!$F3 2896
2 TraesCS7D01G035200 chr7A 18569058 18574901 5843 True 2105.75 4316 91.0435 1 5600 4 chr7A.!!$R1 5599
3 TraesCS7D01G035200 chr7A 17835756 17837024 1268 False 1829.00 1829 92.6300 4320 5600 1 chr7A.!!$F2 1280
4 TraesCS7D01G035200 chr7A 17329248 17330107 859 False 797.00 797 83.4300 3142 4001 1 chr7A.!!$F1 859
5 TraesCS7D01G035200 chr7A 17335407 17338701 3294 False 406.00 462 84.3020 1103 4530 2 chr7A.!!$F3 3427
6 TraesCS7D01G035200 chr4A 714740956 714746364 5408 True 1616.75 3339 91.2435 560 5533 4 chr4A.!!$R2 4973
7 TraesCS7D01G035200 chr4A 715809474 715810304 830 False 798.00 798 83.9950 3153 3983 1 chr4A.!!$F1 830
8 TraesCS7D01G035200 chr4A 715743846 715745377 1531 True 583.50 817 82.2790 3115 4523 2 chr4A.!!$R4 1408
9 TraesCS7D01G035200 chr4A 715816191 715818577 2386 False 575.00 808 82.3800 1093 4003 2 chr4A.!!$F2 2910
10 TraesCS7D01G035200 chr4A 715751596 715754223 2627 True 572.00 774 82.5580 1107 4009 2 chr4A.!!$R5 2902
11 TraesCS7D01G035200 chr4A 714917134 714920414 3280 True 378.50 431 79.5760 1112 4785 2 chr4A.!!$R3 3673
12 TraesCS7D01G035200 chrUn 321392818 321395162 2344 True 3334.00 3334 92.2780 3171 5533 1 chrUn.!!$R1 2362
13 TraesCS7D01G035200 chrUn 417024195 417025344 1149 True 1478.00 1478 89.5610 560 1765 1 chrUn.!!$R2 1205
14 TraesCS7D01G035200 chrUn 277338861 277339568 707 False 425.00 425 78.1510 4098 4785 1 chrUn.!!$F1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.331278 TTGTGGGTCCATTGCTAGGG 59.669 55.000 0.00 0.00 0.00 3.53 F
548 549 0.476771 GGGTTGAGGTTGGACTTGGA 59.523 55.000 0.00 0.00 0.00 3.53 F
1680 1977 0.546598 AATCCGACTCCAACCCCATC 59.453 55.000 0.00 0.00 0.00 3.51 F
2699 3602 1.065491 TCTGGTGGCATGTCACATACC 60.065 52.381 30.14 14.76 39.27 2.73 F
2769 3672 0.236187 CGACAATTTTTCGGCCGACA 59.764 50.000 31.19 20.99 32.66 4.35 F
2866 3769 1.086696 ATGCCGTCCAGAAAATGTCG 58.913 50.000 0.00 0.00 0.00 4.35 F
4574 6446 0.109723 ACCAATACCAACGCCACTGT 59.890 50.000 0.00 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2662 0.108804 CATAGAGTGCCACGAACCGT 60.109 55.000 0.00 0.0 42.36 4.83 R
2545 3448 4.992951 ACTACTGACGATGGTGGTAAAAAC 59.007 41.667 0.00 0.0 0.00 2.43 R
2731 3634 0.673644 GGTTGTGTAGCACCGCTCAT 60.674 55.000 0.00 0.0 40.44 2.90 R
4561 6433 0.179468 ACTGTAACAGTGGCGTTGGT 59.821 50.000 0.00 0.0 43.63 3.67 R
4574 6446 2.553086 GTGTGGTTTCGGTCACTGTAA 58.447 47.619 0.00 0.0 35.15 2.41 R
4594 6477 3.784511 AAGAGGCACCTCATATCATGG 57.215 47.619 18.67 0.0 44.99 3.66 R
5490 7397 6.506500 AGAACAACTTCTGCATTCTATTGG 57.493 37.500 0.00 0.0 35.24 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.308998 CCAAAAGGTCACGAGCTGTT 58.691 50.000 0.00 0.00 39.39 3.16
42 43 5.928839 CACGAGCTGTTCCTATGCTTTATAT 59.071 40.000 0.00 0.00 37.16 0.86
44 45 6.159293 CGAGCTGTTCCTATGCTTTATATGA 58.841 40.000 0.00 0.00 37.16 2.15
48 49 9.359653 AGCTGTTCCTATGCTTTATATGAAATT 57.640 29.630 0.00 0.00 30.80 1.82
72 73 7.315247 TGTAAAGCATTTATAGTTCACGCAT 57.685 32.000 0.00 0.00 43.30 4.73
74 75 7.696035 TGTAAAGCATTTATAGTTCACGCATTG 59.304 33.333 0.00 0.00 43.30 2.82
84 85 7.843490 ATAGTTCACGCATTGTACTATTTGT 57.157 32.000 8.14 0.00 42.95 2.83
178 179 2.888834 ACACAAATGAACAAGGCACC 57.111 45.000 0.00 0.00 0.00 5.01
217 218 1.722034 TCTCTTGCCCTGTCAACTCT 58.278 50.000 0.00 0.00 0.00 3.24
276 277 7.527196 GCAGCAGGTCTAATGAACCCTATAATA 60.527 40.741 0.00 0.00 0.00 0.98
277 278 8.543774 CAGCAGGTCTAATGAACCCTATAATAT 58.456 37.037 0.00 0.00 0.00 1.28
282 283 9.436957 GGTCTAATGAACCCTATAATATGTGTG 57.563 37.037 0.00 0.00 0.00 3.82
297 298 2.660572 TGTGTGTAGCAAATTGTGGGT 58.339 42.857 0.00 0.00 0.00 4.51
298 299 2.621055 TGTGTGTAGCAAATTGTGGGTC 59.379 45.455 0.00 0.00 0.00 4.46
299 300 2.030274 GTGTGTAGCAAATTGTGGGTCC 60.030 50.000 0.00 0.00 0.00 4.46
300 301 2.235016 GTGTAGCAAATTGTGGGTCCA 58.765 47.619 0.00 0.00 0.00 4.02
301 302 2.825532 GTGTAGCAAATTGTGGGTCCAT 59.174 45.455 0.00 0.00 0.00 3.41
302 303 3.258123 GTGTAGCAAATTGTGGGTCCATT 59.742 43.478 0.00 0.00 0.00 3.16
303 304 3.257873 TGTAGCAAATTGTGGGTCCATTG 59.742 43.478 0.00 0.00 0.00 2.82
304 305 1.002315 AGCAAATTGTGGGTCCATTGC 59.998 47.619 14.69 14.69 42.48 3.56
305 306 1.002315 GCAAATTGTGGGTCCATTGCT 59.998 47.619 15.05 0.00 39.87 3.91
306 307 2.233431 GCAAATTGTGGGTCCATTGCTA 59.767 45.455 15.05 0.00 39.87 3.49
307 308 3.676873 GCAAATTGTGGGTCCATTGCTAG 60.677 47.826 15.05 0.00 39.87 3.42
308 309 2.442236 ATTGTGGGTCCATTGCTAGG 57.558 50.000 0.00 0.00 0.00 3.02
309 310 0.331278 TTGTGGGTCCATTGCTAGGG 59.669 55.000 0.00 0.00 0.00 3.53
395 396 9.710900 GGAACAATTCAAGGACAAAAAGAATAT 57.289 29.630 0.00 0.00 0.00 1.28
443 444 4.846779 TGCAAGTTGGATTTAGTTGACC 57.153 40.909 4.75 0.00 0.00 4.02
444 445 4.469657 TGCAAGTTGGATTTAGTTGACCT 58.530 39.130 4.75 0.00 0.00 3.85
447 448 5.222631 CAAGTTGGATTTAGTTGACCTTGC 58.777 41.667 0.00 0.00 0.00 4.01
457 458 9.736023 GATTTAGTTGACCTTGCTTAATTATGG 57.264 33.333 1.00 0.00 0.00 2.74
458 459 8.644374 TTTAGTTGACCTTGCTTAATTATGGT 57.356 30.769 1.00 0.00 0.00 3.55
459 460 9.742144 TTTAGTTGACCTTGCTTAATTATGGTA 57.258 29.630 1.00 0.00 0.00 3.25
460 461 9.914834 TTAGTTGACCTTGCTTAATTATGGTAT 57.085 29.630 1.00 0.00 0.00 2.73
461 462 8.451908 AGTTGACCTTGCTTAATTATGGTATC 57.548 34.615 1.00 0.00 0.00 2.24
463 464 8.345565 GTTGACCTTGCTTAATTATGGTATCAG 58.654 37.037 1.00 0.00 0.00 2.90
466 467 5.183904 CCTTGCTTAATTATGGTATCAGGCC 59.816 44.000 0.00 0.00 0.00 5.19
472 473 7.123247 GCTTAATTATGGTATCAGGCCAATCAT 59.877 37.037 5.01 1.71 39.72 2.45
483 484 4.576053 TCAGGCCAATCATATTGAAAGTCG 59.424 41.667 5.01 0.00 0.00 4.18
490 491 2.093921 TCATATTGAAAGTCGTCGGCCA 60.094 45.455 2.24 0.00 0.00 5.36
503 504 1.404035 GTCGGCCAAGTTTTGTCTTGT 59.596 47.619 2.24 0.00 42.01 3.16
505 506 2.159310 TCGGCCAAGTTTTGTCTTGTTG 60.159 45.455 2.24 0.00 42.01 3.33
546 547 2.876079 GCTAGGGTTGAGGTTGGACTTG 60.876 54.545 0.00 0.00 0.00 3.16
548 549 0.476771 GGGTTGAGGTTGGACTTGGA 59.523 55.000 0.00 0.00 0.00 3.53
549 550 1.133606 GGGTTGAGGTTGGACTTGGAA 60.134 52.381 0.00 0.00 0.00 3.53
550 551 2.490902 GGGTTGAGGTTGGACTTGGAAT 60.491 50.000 0.00 0.00 0.00 3.01
551 552 3.230976 GGTTGAGGTTGGACTTGGAATT 58.769 45.455 0.00 0.00 0.00 2.17
552 553 3.641436 GGTTGAGGTTGGACTTGGAATTT 59.359 43.478 0.00 0.00 0.00 1.82
553 554 4.501400 GGTTGAGGTTGGACTTGGAATTTG 60.501 45.833 0.00 0.00 0.00 2.32
554 555 2.627699 TGAGGTTGGACTTGGAATTTGC 59.372 45.455 0.00 0.00 0.00 3.68
555 556 1.970640 AGGTTGGACTTGGAATTTGCC 59.029 47.619 0.00 0.00 0.00 4.52
557 558 1.611491 GTTGGACTTGGAATTTGCCGA 59.389 47.619 0.00 0.00 0.00 5.54
558 559 1.533625 TGGACTTGGAATTTGCCGAG 58.466 50.000 0.00 0.00 43.83 4.63
569 744 2.791383 TTTGCCGAGGTTTGTCAATG 57.209 45.000 0.00 0.00 0.00 2.82
574 749 3.007074 TGCCGAGGTTTGTCAATGTACTA 59.993 43.478 0.00 0.00 0.00 1.82
584 759 6.850752 TTGTCAATGTACTACATGAGGAGA 57.149 37.500 0.00 0.00 37.97 3.71
589 764 7.063544 GTCAATGTACTACATGAGGAGAAACAC 59.936 40.741 0.00 0.00 37.97 3.32
597 772 4.289672 ACATGAGGAGAAACACCCATAGTT 59.710 41.667 0.00 0.00 0.00 2.24
642 817 8.004087 ACAGTCTCGTTAACAAATATAGGCTA 57.996 34.615 6.39 0.00 0.00 3.93
672 848 6.922247 AACTATTCAGCAATGATCTGTCAG 57.078 37.500 0.00 0.00 37.87 3.51
707 883 6.452242 ACGTGTCTGATCACACAAACTATTA 58.548 36.000 14.69 0.00 46.09 0.98
708 884 6.365247 ACGTGTCTGATCACACAAACTATTAC 59.635 38.462 14.69 0.00 46.09 1.89
709 885 6.452480 CGTGTCTGATCACACAAACTATTACG 60.452 42.308 14.69 5.11 46.09 3.18
715 891 9.222916 CTGATCACACAAACTATTACGTACTAG 57.777 37.037 16.07 16.07 0.00 2.57
718 894 6.151648 TCACACAAACTATTACGTACTAGGCT 59.848 38.462 20.24 7.64 0.00 4.58
725 901 8.970859 AACTATTACGTACTAGGCTAGAAGAA 57.029 34.615 27.59 13.38 0.00 2.52
754 930 5.828299 TTAACAACCAAGTGAGGACAAAG 57.172 39.130 0.00 0.00 0.00 2.77
763 939 6.183361 ACCAAGTGAGGACAAAGTACAACTAT 60.183 38.462 0.00 0.00 0.00 2.12
770 946 6.296026 AGGACAAAGTACAACTATGCAAGAA 58.704 36.000 0.00 0.00 0.00 2.52
776 952 9.371136 CAAAGTACAACTATGCAAGAAGATAGA 57.629 33.333 0.00 0.00 0.00 1.98
818 994 1.670791 GCGACCTAGCTAGTCTCAGT 58.329 55.000 19.31 9.46 31.83 3.41
820 996 2.032426 GCGACCTAGCTAGTCTCAGTTC 59.968 54.545 19.31 3.60 31.83 3.01
821 997 2.614983 CGACCTAGCTAGTCTCAGTTCC 59.385 54.545 19.31 0.00 31.83 3.62
822 998 3.622630 GACCTAGCTAGTCTCAGTTCCA 58.377 50.000 19.31 0.00 0.00 3.53
823 999 4.017808 GACCTAGCTAGTCTCAGTTCCAA 58.982 47.826 19.31 0.00 0.00 3.53
824 1000 3.764972 ACCTAGCTAGTCTCAGTTCCAAC 59.235 47.826 19.31 0.00 0.00 3.77
825 1001 4.020543 CCTAGCTAGTCTCAGTTCCAACT 58.979 47.826 19.31 0.00 40.60 3.16
826 1002 5.194432 CCTAGCTAGTCTCAGTTCCAACTA 58.806 45.833 19.31 0.00 37.08 2.24
827 1003 5.652891 CCTAGCTAGTCTCAGTTCCAACTAA 59.347 44.000 19.31 0.00 37.08 2.24
828 1004 5.394224 AGCTAGTCTCAGTTCCAACTAAC 57.606 43.478 0.00 0.00 37.08 2.34
829 1005 4.833380 AGCTAGTCTCAGTTCCAACTAACA 59.167 41.667 0.00 0.00 37.08 2.41
830 1006 5.304614 AGCTAGTCTCAGTTCCAACTAACAA 59.695 40.000 0.00 0.00 37.08 2.83
831 1007 6.014156 AGCTAGTCTCAGTTCCAACTAACAAT 60.014 38.462 0.00 0.00 37.08 2.71
832 1008 7.178628 AGCTAGTCTCAGTTCCAACTAACAATA 59.821 37.037 0.00 0.00 37.08 1.90
846 1022 9.773328 CCAACTAACAATATCACACAAACTATG 57.227 33.333 0.00 0.00 0.00 2.23
899 1075 1.275291 CGGGCTCTCAGTTCCAACTAA 59.725 52.381 0.00 0.00 37.08 2.24
917 1093 5.073311 ACTAACAATATCGTGCACTGACT 57.927 39.130 16.19 6.97 0.00 3.41
935 1111 8.077386 GCACTGACTCTAGACTTGGTAATATAC 58.923 40.741 0.00 0.00 0.00 1.47
1341 1517 4.286549 GTCATCTCCCTCATCCTCATCATT 59.713 45.833 0.00 0.00 0.00 2.57
1491 1669 4.103311 GTGGCCTTCTCCTTTCTGGTATAT 59.897 45.833 3.32 0.00 37.07 0.86
1680 1977 0.546598 AATCCGACTCCAACCCCATC 59.453 55.000 0.00 0.00 0.00 3.51
1684 1981 1.928567 GACTCCAACCCCATCCCCA 60.929 63.158 0.00 0.00 0.00 4.96
1727 2024 1.128188 AACTCTGACCCCACCTCCAC 61.128 60.000 0.00 0.00 0.00 4.02
1850 2280 1.314730 CCCGCCAATGGTAATGGTAC 58.685 55.000 0.00 0.00 40.23 3.34
2127 2593 2.399916 AGAAGCTGAGCAAGACCATC 57.600 50.000 7.39 0.00 0.00 3.51
2545 3448 5.679734 AACAGAACTATGTGCAAGAAGTG 57.320 39.130 0.00 0.00 32.52 3.16
2556 3459 4.109766 GTGCAAGAAGTGTTTTTACCACC 58.890 43.478 0.00 0.00 33.20 4.61
2557 3460 3.764434 TGCAAGAAGTGTTTTTACCACCA 59.236 39.130 0.00 0.00 33.20 4.17
2563 3466 3.811083 AGTGTTTTTACCACCATCGTCA 58.189 40.909 0.00 0.00 33.20 4.35
2570 3473 4.877378 TTACCACCATCGTCAGTAGTTT 57.123 40.909 0.00 0.00 0.00 2.66
2577 3480 4.224370 ACCATCGTCAGTAGTTTTACCCAT 59.776 41.667 0.00 0.00 0.00 4.00
2699 3602 1.065491 TCTGGTGGCATGTCACATACC 60.065 52.381 30.14 14.76 39.27 2.73
2705 3608 4.513442 GTGGCATGTCACATACCTCTTTA 58.487 43.478 25.20 0.00 37.57 1.85
2739 3642 3.418684 AGGTACTTCAAAATGAGCGGT 57.581 42.857 0.00 0.00 27.25 5.68
2740 3643 3.074412 AGGTACTTCAAAATGAGCGGTG 58.926 45.455 0.00 0.00 27.25 4.94
2741 3644 2.414161 GGTACTTCAAAATGAGCGGTGC 60.414 50.000 0.00 0.00 0.00 5.01
2742 3645 1.609208 ACTTCAAAATGAGCGGTGCT 58.391 45.000 0.00 0.00 43.88 4.40
2743 3646 2.778299 ACTTCAAAATGAGCGGTGCTA 58.222 42.857 0.00 0.00 39.88 3.49
2748 3651 1.890876 AAATGAGCGGTGCTACACAA 58.109 45.000 0.00 0.00 39.88 3.33
2751 3654 2.357034 AGCGGTGCTACACAACCG 60.357 61.111 9.78 9.78 42.35 4.44
2753 3656 2.664436 GCGGTGCTACACAACCGAC 61.664 63.158 17.72 5.79 42.17 4.79
2760 3663 4.356289 GTGCTACACAACCGACAATTTTT 58.644 39.130 0.00 0.00 34.08 1.94
2769 3672 0.236187 CGACAATTTTTCGGCCGACA 59.764 50.000 31.19 20.99 32.66 4.35
2782 3685 1.953642 CCGACACATGCACGACACA 60.954 57.895 8.04 0.00 0.00 3.72
2796 3699 1.654105 CGACACAAGCTAATCACCGTC 59.346 52.381 0.00 0.00 0.00 4.79
2798 3701 2.668457 GACACAAGCTAATCACCGTCAG 59.332 50.000 0.00 0.00 0.00 3.51
2811 3714 5.585500 TCACCGTCAGTTTAAATTTCTCG 57.415 39.130 0.00 0.00 0.00 4.04
2813 3716 4.383173 ACCGTCAGTTTAAATTTCTCGGT 58.617 39.130 15.92 15.92 42.84 4.69
2844 3747 4.650754 ACGTGAGATCCTACCATTGTAC 57.349 45.455 0.00 0.00 0.00 2.90
2863 3766 1.541147 ACACATGCCGTCCAGAAAATG 59.459 47.619 0.00 0.00 0.00 2.32
2866 3769 1.086696 ATGCCGTCCAGAAAATGTCG 58.913 50.000 0.00 0.00 0.00 4.35
2873 3776 2.032030 GTCCAGAAAATGTCGTGTGTGG 60.032 50.000 0.00 0.00 0.00 4.17
2934 3947 9.450807 GCACACAATCAAAATGGTAATATAGAC 57.549 33.333 0.00 0.00 0.00 2.59
2989 4002 8.730680 AGTGTAAGTGGAATTTTCATGTGTATC 58.269 33.333 0.00 0.00 0.00 2.24
3201 4832 4.085357 TGCTACTCTTGTTGTGACCATT 57.915 40.909 0.00 0.00 0.00 3.16
4261 6121 3.332034 GACATTAACAAGCACCGGTACT 58.668 45.455 6.87 3.13 0.00 2.73
4263 6123 4.248058 ACATTAACAAGCACCGGTACTAC 58.752 43.478 6.87 0.00 0.00 2.73
4362 6234 4.284829 TCACAATCACAATCTGCCACTA 57.715 40.909 0.00 0.00 0.00 2.74
4424 6296 2.001361 CTTGTGGCCTATGCAGCAGC 62.001 60.000 3.32 0.00 40.13 5.25
4561 6433 6.830912 AGTGCTAGCAATGAGAATACCAATA 58.169 36.000 21.29 0.00 0.00 1.90
4574 6446 0.109723 ACCAATACCAACGCCACTGT 59.890 50.000 0.00 0.00 0.00 3.55
4594 6477 2.228138 TACAGTGACCGAAACCACAC 57.772 50.000 0.00 0.00 35.84 3.82
4735 6630 1.559682 TGATCACTTAGGCTCAACCCC 59.440 52.381 0.00 0.00 40.58 4.95
4818 6713 3.498082 CATTGCATGCATGGACATATCG 58.502 45.455 27.34 6.13 0.00 2.92
4829 6724 6.369615 TGCATGGACATATCGATGAACTAATG 59.630 38.462 8.54 5.09 42.13 1.90
4868 6763 4.096382 CAGTGACATTTGCCCATAACCTAC 59.904 45.833 0.00 0.00 0.00 3.18
4939 6834 4.697352 CAGGAGACAGAAACCCAAATACAG 59.303 45.833 0.00 0.00 0.00 2.74
5031 6926 0.260816 ACTCCCGCTCACACCCTATA 59.739 55.000 0.00 0.00 0.00 1.31
5135 7030 1.002746 TGCTATTGTGGCGCTGGAA 60.003 52.632 7.64 0.00 0.00 3.53
5177 7072 9.313118 CAATTAAGTTATTTTAATGGCCTGGAC 57.687 33.333 3.32 0.00 34.39 4.02
5189 7084 1.674057 CCTGGACGCAGAGTTTCCT 59.326 57.895 0.00 0.00 0.00 3.36
5227 7122 1.002017 CTGCCCCATGTTCCCCAAT 59.998 57.895 0.00 0.00 0.00 3.16
5245 7144 3.278574 CAATAGTTCGGATGGGCTTCAA 58.721 45.455 0.00 0.00 0.00 2.69
5345 7247 3.738982 ACTGGATGTGAATGTCAAACGA 58.261 40.909 0.00 0.00 0.00 3.85
5351 7253 4.481930 TGTGAATGTCAAACGACCATTC 57.518 40.909 0.00 0.00 34.72 2.67
5353 7255 4.219033 GTGAATGTCAAACGACCATTCAC 58.781 43.478 21.69 21.69 43.94 3.18
5363 7265 1.545582 CGACCATTCACCCAGCAATTT 59.454 47.619 0.00 0.00 0.00 1.82
5366 7268 2.564062 ACCATTCACCCAGCAATTTCTG 59.436 45.455 0.00 0.00 0.00 3.02
5368 7270 3.449737 CCATTCACCCAGCAATTTCTGAT 59.550 43.478 6.67 0.00 36.19 2.90
5421 7323 0.527600 TCCATCGTGCATCTACGTGC 60.528 55.000 0.00 0.00 44.06 5.34
5490 7397 6.851609 TGTACCACTGAATATGCATTTTGAC 58.148 36.000 3.54 0.00 0.00 3.18
5559 7466 5.543507 ATTTGTGCCAACCTAATTTCACA 57.456 34.783 0.00 0.00 32.34 3.58
5591 7498 4.730613 GCGAAAATAAATCCACACGCAGAT 60.731 41.667 0.00 0.00 43.35 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.629043 TAGGAACAGCTCGTGACCTT 58.371 50.000 14.89 5.88 37.54 3.50
14 15 1.478510 CATAGGAACAGCTCGTGACCT 59.521 52.381 14.43 14.43 38.94 3.85
15 16 1.927895 CATAGGAACAGCTCGTGACC 58.072 55.000 0.00 0.00 0.00 4.02
20 21 6.159293 TCATATAAAGCATAGGAACAGCTCG 58.841 40.000 0.00 0.00 37.70 5.03
44 45 9.072294 GCGTGAACTATAAATGCTTTACAATTT 57.928 29.630 0.00 0.00 0.00 1.82
48 49 6.729391 TGCGTGAACTATAAATGCTTTACA 57.271 33.333 0.00 0.00 0.00 2.41
54 55 6.715464 AGTACAATGCGTGAACTATAAATGC 58.285 36.000 0.00 0.00 0.00 3.56
60 61 7.676338 GCACAAATAGTACAATGCGTGAACTAT 60.676 37.037 8.41 0.00 32.87 2.12
63 64 4.553429 GCACAAATAGTACAATGCGTGAAC 59.447 41.667 8.41 0.00 0.00 3.18
68 69 3.373748 TCCTGCACAAATAGTACAATGCG 59.626 43.478 0.00 0.00 35.83 4.73
69 70 4.635765 TCTCCTGCACAAATAGTACAATGC 59.364 41.667 0.00 0.00 0.00 3.56
72 73 7.575414 TTTTTCTCCTGCACAAATAGTACAA 57.425 32.000 0.00 0.00 0.00 2.41
102 103 8.223769 GCCGTAGATATCATGTGTTTATTTCAG 58.776 37.037 5.32 0.00 0.00 3.02
153 154 4.999950 TGCCTTGTTCATTTGTGTTTGTTT 59.000 33.333 0.00 0.00 0.00 2.83
155 156 3.932089 GTGCCTTGTTCATTTGTGTTTGT 59.068 39.130 0.00 0.00 0.00 2.83
156 157 3.309410 GGTGCCTTGTTCATTTGTGTTTG 59.691 43.478 0.00 0.00 0.00 2.93
157 158 3.055530 TGGTGCCTTGTTCATTTGTGTTT 60.056 39.130 0.00 0.00 0.00 2.83
158 159 2.499289 TGGTGCCTTGTTCATTTGTGTT 59.501 40.909 0.00 0.00 0.00 3.32
159 160 2.106566 TGGTGCCTTGTTCATTTGTGT 58.893 42.857 0.00 0.00 0.00 3.72
160 161 2.886862 TGGTGCCTTGTTCATTTGTG 57.113 45.000 0.00 0.00 0.00 3.33
161 162 2.037511 CCATGGTGCCTTGTTCATTTGT 59.962 45.455 2.57 0.00 0.00 2.83
162 163 2.299582 TCCATGGTGCCTTGTTCATTTG 59.700 45.455 12.58 0.00 0.00 2.32
163 164 2.564062 CTCCATGGTGCCTTGTTCATTT 59.436 45.455 12.58 0.00 0.00 2.32
164 165 2.173519 CTCCATGGTGCCTTGTTCATT 58.826 47.619 12.58 0.00 0.00 2.57
165 166 1.076024 ACTCCATGGTGCCTTGTTCAT 59.924 47.619 12.58 0.00 0.00 2.57
166 167 0.478072 ACTCCATGGTGCCTTGTTCA 59.522 50.000 12.58 0.00 0.00 3.18
167 168 2.489938 TACTCCATGGTGCCTTGTTC 57.510 50.000 12.58 0.00 0.00 3.18
178 179 9.205719 CAAGAGATTCATCTTACATACTCCATG 57.794 37.037 0.00 0.00 37.43 3.66
217 218 2.583024 TCACTGGAATGATGCACCAA 57.417 45.000 0.00 0.00 33.14 3.67
276 277 3.230134 ACCCACAATTTGCTACACACAT 58.770 40.909 0.00 0.00 0.00 3.21
277 278 2.621055 GACCCACAATTTGCTACACACA 59.379 45.455 0.00 0.00 0.00 3.72
282 283 3.848726 CAATGGACCCACAATTTGCTAC 58.151 45.455 0.00 0.00 0.00 3.58
298 299 2.358898 CGTTTTCCATCCCTAGCAATGG 59.641 50.000 13.03 13.03 43.22 3.16
299 300 3.278574 TCGTTTTCCATCCCTAGCAATG 58.721 45.455 0.00 0.00 0.00 2.82
300 301 3.644966 TCGTTTTCCATCCCTAGCAAT 57.355 42.857 0.00 0.00 0.00 3.56
301 302 3.644966 ATCGTTTTCCATCCCTAGCAA 57.355 42.857 0.00 0.00 0.00 3.91
302 303 3.644966 AATCGTTTTCCATCCCTAGCA 57.355 42.857 0.00 0.00 0.00 3.49
303 304 4.921547 GAAAATCGTTTTCCATCCCTAGC 58.078 43.478 10.32 0.00 42.42 3.42
369 370 9.710900 ATATTCTTTTTGTCCTTGAATTGTTCC 57.289 29.630 0.00 0.00 0.00 3.62
395 396 6.938507 AGAAATGTACAACCACCTTCGTATA 58.061 36.000 0.00 0.00 0.00 1.47
399 400 6.542852 CATTAGAAATGTACAACCACCTTCG 58.457 40.000 0.00 0.00 0.00 3.79
400 401 6.072175 TGCATTAGAAATGTACAACCACCTTC 60.072 38.462 0.00 0.00 0.00 3.46
412 413 8.806146 ACTAAATCCAACTTGCATTAGAAATGT 58.194 29.630 6.48 0.00 0.00 2.71
443 444 5.769662 TGGCCTGATACCATAATTAAGCAAG 59.230 40.000 3.32 0.00 30.29 4.01
444 445 5.700183 TGGCCTGATACCATAATTAAGCAA 58.300 37.500 3.32 0.00 30.29 3.91
447 448 8.585471 ATGATTGGCCTGATACCATAATTAAG 57.415 34.615 3.32 0.00 36.96 1.85
457 458 7.516198 ACTTTCAATATGATTGGCCTGATAC 57.484 36.000 3.32 0.00 0.00 2.24
458 459 6.427853 CGACTTTCAATATGATTGGCCTGATA 59.572 38.462 3.32 0.00 0.00 2.15
459 460 5.240183 CGACTTTCAATATGATTGGCCTGAT 59.760 40.000 3.32 0.00 0.00 2.90
460 461 4.576053 CGACTTTCAATATGATTGGCCTGA 59.424 41.667 3.32 0.00 0.00 3.86
461 462 4.336433 ACGACTTTCAATATGATTGGCCTG 59.664 41.667 3.32 0.00 0.00 4.85
463 464 4.552767 CGACGACTTTCAATATGATTGGCC 60.553 45.833 0.00 0.00 0.00 5.36
466 467 4.518217 GCCGACGACTTTCAATATGATTG 58.482 43.478 0.00 0.00 0.00 2.67
472 473 2.289195 ACTTGGCCGACGACTTTCAATA 60.289 45.455 0.00 0.00 0.00 1.90
483 484 2.119671 CAAGACAAAACTTGGCCGAC 57.880 50.000 0.00 0.00 40.48 4.79
490 491 4.526650 ACCAGTTCCAACAAGACAAAACTT 59.473 37.500 0.00 0.00 0.00 2.66
503 504 4.000325 CACATATTCGACACCAGTTCCAA 59.000 43.478 0.00 0.00 0.00 3.53
505 506 2.351726 GCACATATTCGACACCAGTTCC 59.648 50.000 0.00 0.00 0.00 3.62
546 547 1.611491 TGACAAACCTCGGCAAATTCC 59.389 47.619 0.00 0.00 0.00 3.01
548 549 3.069443 ACATTGACAAACCTCGGCAAATT 59.931 39.130 0.00 0.00 0.00 1.82
549 550 2.627699 ACATTGACAAACCTCGGCAAAT 59.372 40.909 0.00 0.00 0.00 2.32
550 551 2.028130 ACATTGACAAACCTCGGCAAA 58.972 42.857 0.00 0.00 0.00 3.68
551 552 1.686355 ACATTGACAAACCTCGGCAA 58.314 45.000 0.00 0.00 0.00 4.52
552 553 2.147958 GTACATTGACAAACCTCGGCA 58.852 47.619 0.00 0.00 0.00 5.69
553 554 2.423577 AGTACATTGACAAACCTCGGC 58.576 47.619 0.00 0.00 0.00 5.54
554 555 4.562082 TGTAGTACATTGACAAACCTCGG 58.438 43.478 0.00 0.00 0.00 4.63
555 556 5.867174 TCATGTAGTACATTGACAAACCTCG 59.133 40.000 13.25 0.00 36.53 4.63
557 558 6.013725 TCCTCATGTAGTACATTGACAAACCT 60.014 38.462 13.25 0.00 36.53 3.50
558 559 6.170506 TCCTCATGTAGTACATTGACAAACC 58.829 40.000 13.25 0.00 36.53 3.27
569 744 4.222145 TGGGTGTTTCTCCTCATGTAGTAC 59.778 45.833 0.00 0.00 0.00 2.73
574 749 3.846588 ACTATGGGTGTTTCTCCTCATGT 59.153 43.478 0.00 0.00 0.00 3.21
614 789 7.703621 GCCTATATTTGTTAACGAGACTGTACA 59.296 37.037 0.26 0.00 0.00 2.90
637 812 6.485830 TGCTGAATAGTTAATGACTAGCCT 57.514 37.500 0.00 0.00 43.79 4.58
642 817 9.053840 CAGATCATTGCTGAATAGTTAATGACT 57.946 33.333 0.00 0.00 39.77 3.41
672 848 6.531594 TGTGATCAGACACGTCAGAATTATTC 59.468 38.462 0.00 0.00 42.86 1.75
689 865 9.222916 CTAGTACGTAATAGTTTGTGTGATCAG 57.777 37.037 19.33 0.00 0.00 2.90
691 867 7.167136 GCCTAGTACGTAATAGTTTGTGTGATC 59.833 40.741 23.95 0.00 0.00 2.92
693 869 6.151648 AGCCTAGTACGTAATAGTTTGTGTGA 59.848 38.462 23.95 0.00 0.00 3.58
725 901 8.919145 TGTCCTCACTTGGTTGTTAATTTTATT 58.081 29.630 0.00 0.00 0.00 1.40
734 910 3.697166 ACTTTGTCCTCACTTGGTTGTT 58.303 40.909 0.00 0.00 0.00 2.83
737 913 4.497291 TGTACTTTGTCCTCACTTGGTT 57.503 40.909 0.00 0.00 0.00 3.67
744 920 5.222079 TGCATAGTTGTACTTTGTCCTCA 57.778 39.130 0.00 0.00 31.16 3.86
746 922 5.865085 TCTTGCATAGTTGTACTTTGTCCT 58.135 37.500 0.00 0.00 31.16 3.85
770 946 7.394816 CCCGGTGGTCAATTTAATATCTATCT 58.605 38.462 0.00 0.00 0.00 1.98
776 952 3.904717 TGCCCGGTGGTCAATTTAATAT 58.095 40.909 0.00 0.00 0.00 1.28
815 991 7.433708 TGTGTGATATTGTTAGTTGGAACTG 57.566 36.000 2.14 0.00 40.07 3.16
816 992 8.349983 GTTTGTGTGATATTGTTAGTTGGAACT 58.650 33.333 0.00 0.00 42.91 3.01
817 993 8.349983 AGTTTGTGTGATATTGTTAGTTGGAAC 58.650 33.333 0.00 0.00 0.00 3.62
818 994 8.458573 AGTTTGTGTGATATTGTTAGTTGGAA 57.541 30.769 0.00 0.00 0.00 3.53
820 996 9.773328 CATAGTTTGTGTGATATTGTTAGTTGG 57.227 33.333 0.00 0.00 0.00 3.77
821 997 9.773328 CCATAGTTTGTGTGATATTGTTAGTTG 57.227 33.333 0.00 0.00 0.00 3.16
822 998 8.956426 CCCATAGTTTGTGTGATATTGTTAGTT 58.044 33.333 0.00 0.00 0.00 2.24
823 999 8.325787 TCCCATAGTTTGTGTGATATTGTTAGT 58.674 33.333 0.00 0.00 0.00 2.24
824 1000 8.731275 TCCCATAGTTTGTGTGATATTGTTAG 57.269 34.615 0.00 0.00 0.00 2.34
825 1001 9.693739 ATTCCCATAGTTTGTGTGATATTGTTA 57.306 29.630 0.00 0.00 0.00 2.41
826 1002 8.469200 CATTCCCATAGTTTGTGTGATATTGTT 58.531 33.333 0.00 0.00 0.00 2.83
827 1003 7.068593 CCATTCCCATAGTTTGTGTGATATTGT 59.931 37.037 0.00 0.00 0.00 2.71
828 1004 7.285172 TCCATTCCCATAGTTTGTGTGATATTG 59.715 37.037 0.00 0.00 0.00 1.90
829 1005 7.353525 TCCATTCCCATAGTTTGTGTGATATT 58.646 34.615 0.00 0.00 0.00 1.28
830 1006 6.910191 TCCATTCCCATAGTTTGTGTGATAT 58.090 36.000 0.00 0.00 0.00 1.63
831 1007 6.320434 TCCATTCCCATAGTTTGTGTGATA 57.680 37.500 0.00 0.00 0.00 2.15
832 1008 5.191727 TCCATTCCCATAGTTTGTGTGAT 57.808 39.130 0.00 0.00 0.00 3.06
884 1060 6.811665 CACGATATTGTTAGTTGGAACTGAGA 59.188 38.462 2.14 0.00 40.07 3.27
899 1075 3.876274 AGAGTCAGTGCACGATATTGT 57.124 42.857 12.01 0.00 0.00 2.71
946 1122 7.122353 GCTCTGGCTTCAATTTATATCATCCAT 59.878 37.037 0.00 0.00 35.22 3.41
1341 1517 2.356125 GGATGTGCTTTTCCTAGGCAGA 60.356 50.000 2.96 0.00 36.62 4.26
1383 1561 3.120979 TAGGTCGAGCGCCATCACG 62.121 63.158 9.28 2.79 0.00 4.35
1491 1669 1.550327 AGAAGACAGCGAGGATGACA 58.450 50.000 0.00 0.00 0.00 3.58
1684 1981 9.218440 GTTGATTTCATTATCAAAACCAATGGT 57.782 29.630 0.00 0.00 43.88 3.55
1727 2024 1.231068 CCATTGGTGAGGATGGGGG 59.769 63.158 0.00 0.00 39.30 5.40
1798 2107 5.419788 TGGAGTTGGATTGGATTTCATTCTG 59.580 40.000 0.00 0.00 0.00 3.02
1813 2243 1.526887 GGATGCGGATGGAGTTGGA 59.473 57.895 0.00 0.00 0.00 3.53
1938 2404 1.346395 CTAAGCCCGGCCACATATGTA 59.654 52.381 8.32 0.00 0.00 2.29
2127 2593 2.505557 GCCACGAACCGTACCGAG 60.506 66.667 0.00 0.00 38.32 4.63
2133 2662 0.108804 CATAGAGTGCCACGAACCGT 60.109 55.000 0.00 0.00 42.36 4.83
2478 3290 6.859420 ATGGCCAAAAGAAAATTGTGTTAC 57.141 33.333 10.96 0.00 0.00 2.50
2545 3448 4.992951 ACTACTGACGATGGTGGTAAAAAC 59.007 41.667 0.00 0.00 0.00 2.43
2556 3459 5.063438 CACATGGGTAAAACTACTGACGATG 59.937 44.000 0.00 0.00 0.00 3.84
2557 3460 5.175859 CACATGGGTAAAACTACTGACGAT 58.824 41.667 0.00 0.00 0.00 3.73
2717 3620 4.023193 CACCGCTCATTTTGAAGTACCTTT 60.023 41.667 0.00 0.00 0.00 3.11
2720 3623 2.414161 GCACCGCTCATTTTGAAGTACC 60.414 50.000 0.00 0.00 0.00 3.34
2725 3628 2.225491 GTGTAGCACCGCTCATTTTGAA 59.775 45.455 0.00 0.00 40.44 2.69
2726 3629 1.804151 GTGTAGCACCGCTCATTTTGA 59.196 47.619 0.00 0.00 40.44 2.69
2727 3630 1.535028 TGTGTAGCACCGCTCATTTTG 59.465 47.619 0.00 0.00 40.44 2.44
2728 3631 1.890876 TGTGTAGCACCGCTCATTTT 58.109 45.000 0.00 0.00 40.44 1.82
2729 3632 1.535462 GTTGTGTAGCACCGCTCATTT 59.465 47.619 0.00 0.00 40.44 2.32
2730 3633 1.156736 GTTGTGTAGCACCGCTCATT 58.843 50.000 0.00 0.00 40.44 2.57
2731 3634 0.673644 GGTTGTGTAGCACCGCTCAT 60.674 55.000 0.00 0.00 40.44 2.90
2732 3635 1.301401 GGTTGTGTAGCACCGCTCA 60.301 57.895 0.00 0.00 40.44 4.26
2733 3636 2.380410 CGGTTGTGTAGCACCGCTC 61.380 63.158 0.00 0.00 40.44 5.03
2734 3637 2.357034 CGGTTGTGTAGCACCGCT 60.357 61.111 0.00 0.00 43.41 5.52
2735 3638 2.356553 TCGGTTGTGTAGCACCGC 60.357 61.111 6.19 0.00 39.70 5.68
2736 3639 0.876777 TTGTCGGTTGTGTAGCACCG 60.877 55.000 4.75 4.75 40.54 4.94
2737 3640 1.519408 ATTGTCGGTTGTGTAGCACC 58.481 50.000 0.00 0.00 32.73 5.01
2738 3641 3.619233 AAATTGTCGGTTGTGTAGCAC 57.381 42.857 0.00 0.00 34.56 4.40
2739 3642 4.602995 GAAAAATTGTCGGTTGTGTAGCA 58.397 39.130 0.00 0.00 0.00 3.49
2740 3643 3.662186 CGAAAAATTGTCGGTTGTGTAGC 59.338 43.478 0.00 0.00 34.85 3.58
2751 3654 1.002251 TGTGTCGGCCGAAAAATTGTC 60.002 47.619 32.93 15.64 0.00 3.18
2753 3656 1.984990 CATGTGTCGGCCGAAAAATTG 59.015 47.619 32.93 18.45 0.00 2.32
2769 3672 1.877637 TTAGCTTGTGTCGTGCATGT 58.122 45.000 5.68 0.00 0.00 3.21
2782 3685 7.448748 AATTTAAACTGACGGTGATTAGCTT 57.551 32.000 0.00 0.00 0.00 3.74
2811 3714 5.915175 AGGATCTCACGTTCCTTATTTACC 58.085 41.667 0.45 0.00 39.36 2.85
2813 3716 6.608405 TGGTAGGATCTCACGTTCCTTATTTA 59.392 38.462 11.63 0.00 42.40 1.40
2825 3728 5.339008 TGTGTACAATGGTAGGATCTCAC 57.661 43.478 0.00 0.00 0.00 3.51
2840 3743 0.682292 TTCTGGACGGCATGTGTACA 59.318 50.000 5.24 5.24 0.00 2.90
2844 3747 1.541147 ACATTTTCTGGACGGCATGTG 59.459 47.619 0.00 0.00 0.00 3.21
2863 3766 1.641577 GGAATAGCTCCACACACGAC 58.358 55.000 0.00 0.00 44.67 4.34
2873 3776 6.039717 TGGCATATTTTGAAGTGGAATAGCTC 59.960 38.462 0.00 0.00 0.00 4.09
2883 3786 7.577616 GCTCCTAGTTTTGGCATATTTTGAAGT 60.578 37.037 0.00 0.00 0.00 3.01
2965 3978 8.862325 AGATACACATGAAAATTCCACTTACA 57.138 30.769 0.00 0.00 0.00 2.41
4146 6006 4.141846 CCAGTCTGGTATGTCATACTTGCT 60.142 45.833 19.90 11.54 36.04 3.91
4261 6121 4.212636 GGAGTTGCTGTAAAAGAAAGCGTA 59.787 41.667 0.00 0.00 39.88 4.42
4263 6123 3.003275 TGGAGTTGCTGTAAAAGAAAGCG 59.997 43.478 0.00 0.00 39.88 4.68
4362 6234 3.447040 GCCGTATGCATTGGCCAT 58.553 55.556 24.79 0.00 43.06 4.40
4424 6296 5.816682 AGGTTTCCCACTTTCTATTACTGG 58.183 41.667 0.00 0.00 0.00 4.00
4561 6433 0.179468 ACTGTAACAGTGGCGTTGGT 59.821 50.000 0.00 0.00 43.63 3.67
4574 6446 2.553086 GTGTGGTTTCGGTCACTGTAA 58.447 47.619 0.00 0.00 35.15 2.41
4587 6470 3.889815 CACCTCATATCATGGTGTGGTT 58.110 45.455 13.84 0.00 44.35 3.67
4594 6477 3.784511 AAGAGGCACCTCATATCATGG 57.215 47.619 18.67 0.00 44.99 3.66
4610 6493 4.498241 TGTGAATCCGATCAGACAAAGAG 58.502 43.478 0.00 0.00 0.00 2.85
4797 6692 8.273224 TCATCGATATGTCCATGCATGCAATG 62.273 42.308 26.68 21.20 39.82 2.82
4868 6763 4.681942 TCACCGTTTTGTGAACACTTTTTG 59.318 37.500 6.51 0.00 42.06 2.44
5031 6926 3.225940 TCATAGGATGTCGATGACTGCT 58.774 45.455 0.00 0.00 33.54 4.24
5121 7016 1.216178 GCATTTCCAGCGCCACAAT 59.784 52.632 2.29 0.00 0.00 2.71
5177 7072 1.068472 ACGACACTAGGAAACTCTGCG 60.068 52.381 0.00 0.00 43.67 5.18
5227 7122 2.617021 GGTTTGAAGCCCATCCGAACTA 60.617 50.000 0.00 0.00 0.00 2.24
5245 7144 2.435203 AGAAGGTCCTAAGGTGGGTT 57.565 50.000 0.00 0.00 0.00 4.11
5345 7247 2.564062 CAGAAATTGCTGGGTGAATGGT 59.436 45.455 5.41 0.00 32.26 3.55
5351 7253 4.012374 ACTACATCAGAAATTGCTGGGTG 58.988 43.478 13.73 14.24 36.55 4.61
5353 7255 5.404946 CAAACTACATCAGAAATTGCTGGG 58.595 41.667 13.73 8.78 36.55 4.45
5363 7265 6.946340 TGAATCCTTAGCAAACTACATCAGA 58.054 36.000 0.00 0.00 0.00 3.27
5366 7268 8.677300 TGATTTGAATCCTTAGCAAACTACATC 58.323 33.333 1.56 0.00 34.72 3.06
5368 7270 7.994425 TGATTTGAATCCTTAGCAAACTACA 57.006 32.000 1.56 0.00 34.72 2.74
5490 7397 6.506500 AGAACAACTTCTGCATTCTATTGG 57.493 37.500 0.00 0.00 35.24 3.16
5545 7452 6.507023 GCCTTCCATATGTGAAATTAGGTTG 58.493 40.000 1.24 0.00 0.00 3.77
5559 7466 6.549364 TGTGGATTTATTTTCGCCTTCCATAT 59.451 34.615 0.00 0.00 34.55 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.