AutoCloner

Multiple sequence alignment - TraesCS7D01G033800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G033800	chr7D	100.000	2480	0	0	1	2480	17344513	17346992	0.000000e+00	4580.0
1	TraesCS7D01G033800	chr7D	80.458	1049	157	26	171	1189	17214560	17215590	0.000000e+00	758.0
2	TraesCS7D01G033800	chr7D	83.964	661	89	7	518	1161	17207121	17207781	3.500000e-173	617.0
3	TraesCS7D01G033800	chr7D	77.608	1045	210	18	267	1292	537667784	537668823	1.630000e-171	612.0
4	TraesCS7D01G033800	chr7D	76.744	1032	162	43	592	1576	16571985	16572985	2.850000e-139	505.0
5	TraesCS7D01G033800	chr7D	77.273	902	177	21	412	1292	537669063	537669957	2.850000e-139	505.0
6	TraesCS7D01G033800	chr4A	93.203	2207	113	8	1	2171	716955839	716953634	0.000000e+00	3210.0
7	TraesCS7D01G033800	chr4A	79.767	1458	217	39	171	1576	717051365	717049934	0.000000e+00	987.0
8	TraesCS7D01G033800	chr4A	80.364	1375	200	36	158	1485	717045871	717044520	0.000000e+00	979.0
9	TraesCS7D01G033800	chr4A	78.880	1321	203	43	289	1576	718078659	718077382	0.000000e+00	824.0
10	TraesCS7D01G033800	chr4A	78.804	1321	204	43	289	1576	718184799	718183522	0.000000e+00	819.0
11	TraesCS7D01G033800	chr4A	86.667	360	22	13	2132	2480	716896924	716896580	2.330000e-100	375.0
12	TraesCS7D01G033800	chr4A	86.667	360	22	13	2132	2480	716926450	716926106	2.330000e-100	375.0
13	TraesCS7D01G033800	chr7B	77.438	1046	206	22	267	1290	580133634	580134671	4.570000e-167	597.0
14	TraesCS7D01G033800	chr7A	77.605	902	173	23	412	1292	618677578	618678471	1.020000e-143	520.0
15	TraesCS7D01G033800	chrUn	86.667	360	22	13	2132	2480	344381871	344381527	2.330000e-100	375.0
16	TraesCS7D01G033800	chrUn	86.667	360	22	13	2132	2480	344384302	344383958	2.330000e-100	375.0
17	TraesCS7D01G033800	chr5D	94.737	38	2	0	1116	1153	543839140	543839103	2.660000e-05	60.2
18	TraesCS7D01G033800	chr3A	96.774	31	1	0	1119	1149	574346128	574346098	4.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G033800	chr7D	17344513	17346992	2479	False	4580.0	4580	100.0000	1	2480	1	chr7D.!!$F4	2479
1	TraesCS7D01G033800	chr7D	17214560	17215590	1030	False	758.0	758	80.4580	171	1189	1	chr7D.!!$F3	1018
2	TraesCS7D01G033800	chr7D	17207121	17207781	660	False	617.0	617	83.9640	518	1161	1	chr7D.!!$F2	643
3	TraesCS7D01G033800	chr7D	537667784	537669957	2173	False	558.5	612	77.4405	267	1292	2	chr7D.!!$F5	1025
4	TraesCS7D01G033800	chr7D	16571985	16572985	1000	False	505.0	505	76.7440	592	1576	1	chr7D.!!$F1	984
5	TraesCS7D01G033800	chr4A	716953634	716955839	2205	True	3210.0	3210	93.2030	1	2171	1	chr4A.!!$R3	2170
6	TraesCS7D01G033800	chr4A	717049934	717051365	1431	True	987.0	987	79.7670	171	1576	1	chr4A.!!$R5	1405
7	TraesCS7D01G033800	chr4A	717044520	717045871	1351	True	979.0	979	80.3640	158	1485	1	chr4A.!!$R4	1327
8	TraesCS7D01G033800	chr4A	718077382	718078659	1277	True	824.0	824	78.8800	289	1576	1	chr4A.!!$R6	1287
9	TraesCS7D01G033800	chr4A	718183522	718184799	1277	True	819.0	819	78.8040	289	1576	1	chr4A.!!$R7	1287
10	TraesCS7D01G033800	chr7B	580133634	580134671	1037	False	597.0	597	77.4380	267	1290	1	chr7B.!!$F1	1023
11	TraesCS7D01G033800	chr7A	618677578	618678471	893	False	520.0	520	77.6050	412	1292	1	chr7A.!!$F1	880
12	TraesCS7D01G033800	chrUn	344381527	344384302	2775	True	375.0	375	86.6670	2132	2480	2	chrUn.!!$R1	348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
376	389	0.532862	AAACTGTGTGTCGCCTCTGG	60.533	55.0	0.0	0.0	0.0	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1907	2020	0.326427	AGAGAGCCTGCCTTGGAGAT	60.326	55.0	0.0	0.0	0.0	2.75	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
105	106	0.837272	TCGGGGGCTTTCCTAATGAG	59.163	55.000	0.00	0.00	35.33	2.90
218	223	7.362920	GCATACATTAGACCCAAAGAACAACAT	60.363	37.037	0.00	0.00	0.00	2.71
283	288	7.543868	TGTTTTCAGTTTTCATTTCGTCATTGT	59.456	29.630	0.00	0.00	0.00	2.71
333	346	6.542005	TCAACTTGTTATGTTTTGCAGAGAGA	59.458	34.615	0.00	0.00	0.00	3.10
376	389	0.532862	AAACTGTGTGTCGCCTCTGG	60.533	55.000	0.00	0.00	0.00	3.86
385	398	3.314331	CGCCTCTGGGTCCACACT	61.314	66.667	0.00	0.00	34.45	3.55
678	698	1.687563	CAACAAGAACGTCCCCCTTT	58.312	50.000	0.00	0.00	0.00	3.11
682	702	1.061546	AAGAACGTCCCCCTTTGCTA	58.938	50.000	0.00	0.00	0.00	3.49
693	713	2.024941	CCCCTTTGCTACCAGATTCCTT	60.025	50.000	0.00	0.00	0.00	3.36
794	814	1.006086	TTGATGTATTCAGCGGTGCG	58.994	50.000	10.38	0.00	35.27	5.34
894	926	2.865119	TGCATCATCCAACTCACACT	57.135	45.000	0.00	0.00	0.00	3.55
1084	1127	6.092670	GCAGAAGATAACAGCTGAATGTGTTA	59.907	38.462	23.35	8.63	41.98	2.41
1087	1130	5.491070	AGATAACAGCTGAATGTGTTAGCA	58.509	37.500	23.35	0.00	44.35	3.49
1195	1256	4.471904	TCAGGCTGGTCAGTATTTGTAG	57.528	45.455	15.73	0.00	0.00	2.74
1361	1447	5.565439	GCCTTCACTCTTTTATTGTGCATGT	60.565	40.000	0.00	0.00	0.00	3.21
1390	1476	0.182061	TGAGCAAGATCCATCTGCCC	59.818	55.000	0.00	0.00	37.19	5.36
1415	1519	9.790389	CCGTCCTATGATAGAATACAATAGAAC	57.210	37.037	0.00	0.00	0.00	3.01
1440	1550	2.006748	CCCCAATCTGCAACCCCTA	58.993	57.895	0.00	0.00	0.00	3.53
1471	1582	3.701542	TCCGAGCATGTTCTACTCAGATT	59.298	43.478	8.01	0.00	0.00	2.40
1472	1583	4.887655	TCCGAGCATGTTCTACTCAGATTA	59.112	41.667	8.01	0.00	0.00	1.75
1486	1597	6.805016	ACTCAGATTACCAGTGATCATCTT	57.195	37.500	0.00	0.00	0.00	2.40
1496	1607	4.331992	CCAGTGATCATCTTGTGCAACTAG	59.668	45.833	0.00	0.00	41.16	2.57
1522	1633	4.600692	TGCAGCTCTACAAGACTACAAA	57.399	40.909	0.00	0.00	0.00	2.83
1523	1634	4.560128	TGCAGCTCTACAAGACTACAAAG	58.440	43.478	0.00	0.00	0.00	2.77
1524	1635	3.369451	GCAGCTCTACAAGACTACAAAGC	59.631	47.826	0.00	0.00	0.00	3.51
1525	1636	4.815269	CAGCTCTACAAGACTACAAAGCT	58.185	43.478	0.00	0.00	39.31	3.74
1589	1701	4.263462	TGCAACTTGGATAAGACACAGGAT	60.263	41.667	0.00	0.00	37.36	3.24
1617	1729	3.153130	TGTAGCATTAGCACTTGCCAAA	58.847	40.909	0.00	0.00	45.49	3.28
1635	1747	7.240414	TGCCAAATTTTACTTTGTTGTAAGC	57.760	32.000	0.00	0.00	34.90	3.09
1637	1749	6.563196	GCCAAATTTTACTTTGTTGTAAGCGG	60.563	38.462	0.00	0.00	34.90	5.52
1689	1801	0.596600	CAGCTTTGCTTGCACACCAG	60.597	55.000	0.00	0.00	36.40	4.00
1698	1810	3.181491	TGCTTGCACACCAGTTTACTTTC	60.181	43.478	0.00	0.00	0.00	2.62
1725	1837	1.332997	GAAAGCATCAGATTCGCCTGG	59.667	52.381	0.00	0.00	34.99	4.45
1743	1855	1.832998	TGGATACATCTGCTGCTGTGA	59.167	47.619	9.98	0.00	46.17	3.58
1747	1859	5.221783	TGGATACATCTGCTGCTGTGATAAT	60.222	40.000	9.98	0.00	46.17	1.28
1754	1866	5.494724	TCTGCTGCTGTGATAATTCTTCTT	58.505	37.500	0.00	0.00	0.00	2.52
1844	1956	1.172180	TTTTGCAGCACGGAAGAGGG	61.172	55.000	0.00	0.00	0.00	4.30
1907	2020	4.504596	GCCCACCCATCGCCATCA	62.505	66.667	0.00	0.00	0.00	3.07
2011	2124	5.010516	CCTGCTTAGTACACTAGATGCATCT	59.989	44.000	30.85	30.85	40.86	2.90
2018	2131	7.831691	AGTACACTAGATGCATCTGTATCTT	57.168	36.000	34.48	17.77	43.42	2.40
2026	2139	9.702494	CTAGATGCATCTGTATCTTGACAAATA	57.298	33.333	34.48	11.31	43.42	1.40
2042	2155	9.357652	CTTGACAAATATAAAACAACTGGGATG	57.642	33.333	0.00	0.00	0.00	3.51
2165	2278	1.651770	TCCCTCCTGAATCCTACACCT	59.348	52.381	0.00	0.00	0.00	4.00
2179	4754	1.122227	ACACCTGCATTGGCTGTTTT	58.878	45.000	0.00	0.00	41.91	2.43
2214	4789	4.037222	TCCTGAATCCTACACCTGCATTA	58.963	43.478	0.00	0.00	0.00	1.90
2215	4790	4.101585	TCCTGAATCCTACACCTGCATTAG	59.898	45.833	0.00	0.00	0.00	1.73
2216	4791	4.141620	CCTGAATCCTACACCTGCATTAGT	60.142	45.833	0.00	0.00	0.00	2.24
2217	4792	5.023533	TGAATCCTACACCTGCATTAGTC	57.976	43.478	0.00	0.00	0.00	2.59
2218	4793	4.716784	TGAATCCTACACCTGCATTAGTCT	59.283	41.667	0.00	0.00	0.00	3.24
2219	4794	4.946478	ATCCTACACCTGCATTAGTCTC	57.054	45.455	0.00	0.00	0.00	3.36
2220	4795	3.031736	TCCTACACCTGCATTAGTCTCC	58.968	50.000	0.00	0.00	0.00	3.71
2221	4796	2.766263	CCTACACCTGCATTAGTCTCCA	59.234	50.000	0.00	0.00	0.00	3.86
2222	4797	2.770164	ACACCTGCATTAGTCTCCAC	57.230	50.000	0.00	0.00	0.00	4.02
2223	4798	1.977854	ACACCTGCATTAGTCTCCACA	59.022	47.619	0.00	0.00	0.00	4.17
2224	4799	2.027745	ACACCTGCATTAGTCTCCACAG	60.028	50.000	0.00	0.00	0.00	3.66
2227	4802	2.419297	CCTGCATTAGTCTCCACAGTCC	60.419	54.545	0.00	0.00	0.00	3.85
2237	4812	1.344438	CTCCACAGTCCACACAGCTAA	59.656	52.381	0.00	0.00	0.00	3.09
2241	4816	2.036475	CACAGTCCACACAGCTAAGACT	59.964	50.000	0.00	0.00	38.30	3.24
2257	4832	5.470437	GCTAAGACTGAAGTTGCTAAAAGGT	59.530	40.000	0.00	0.00	0.00	3.50
2258	4833	6.649557	GCTAAGACTGAAGTTGCTAAAAGGTA	59.350	38.462	0.00	0.00	0.00	3.08
2259	4834	7.148557	GCTAAGACTGAAGTTGCTAAAAGGTAG	60.149	40.741	0.00	0.00	0.00	3.18
2260	4835	6.176014	AGACTGAAGTTGCTAAAAGGTAGT	57.824	37.500	0.00	0.00	0.00	2.73
2290	4865	2.259281	CAGCATGCATCACCACACA	58.741	52.632	21.98	0.00	0.00	3.72
2291	4866	0.170339	CAGCATGCATCACCACACAG	59.830	55.000	21.98	0.00	0.00	3.66
2292	4867	1.153901	GCATGCATCACCACACAGC	60.154	57.895	14.21	0.00	0.00	4.40
2294	4869	1.741528	CATGCATCACCACACAGCTA	58.258	50.000	0.00	0.00	0.00	3.32
2296	4871	2.495155	TGCATCACCACACAGCTAAT	57.505	45.000	0.00	0.00	0.00	1.73
2299	4874	3.940852	TGCATCACCACACAGCTAATTAG	59.059	43.478	8.20	8.20	0.00	1.73
2397	4982	2.320587	CCTGACACAACTCTGCCGC	61.321	63.158	0.00	0.00	0.00	6.53
2398	4983	1.595109	CTGACACAACTCTGCCGCA	60.595	57.895	0.00	0.00	0.00	5.69
2456	5041	8.383318	TGCCTCTGAATATAATTTCTTACTGC	57.617	34.615	0.00	0.00	0.00	4.40
2464	5049	9.604626	GAATATAATTTCTTACTGCTGATGTGC	57.395	33.333	0.00	0.00	0.00	4.57
2468	5053	3.900966	TCTTACTGCTGATGTGCTCAT	57.099	42.857	0.00	0.00	36.95	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
105	106	7.829706	GGTGGATTCTTCCTTATATTATGGGAC	59.170	40.741	0.00	0.00	43.07	4.46
283	288	5.833131	AGGGCAACAAATTAGAAAGACAAGA	59.167	36.000	0.00	0.00	39.74	3.02
376	389	0.247736	CAGAGCAGGTAGTGTGGACC	59.752	60.000	0.00	0.00	37.22	4.46
385	398	0.826715	GAGCATGGACAGAGCAGGTA	59.173	55.000	0.00	0.00	0.00	3.08
678	698	9.920946	ATAAATTTCTAAAGGAATCTGGTAGCA	57.079	29.630	0.00	0.00	33.53	3.49
682	702	9.413734	CCTGATAAATTTCTAAAGGAATCTGGT	57.586	33.333	0.00	0.00	33.53	4.00
762	782	7.272084	GCTGAATACATCAACAACAAGACAATC	59.728	37.037	0.00	0.00	37.67	2.67
894	926	3.552132	TGTTGTAGTGCTGACAAGGAA	57.448	42.857	0.00	0.00	37.47	3.36
1084	1127	2.116125	GCTTGGGGTCAGGTTGCT	59.884	61.111	0.00	0.00	0.00	3.91
1087	1130	4.002006	TGAGCTTGGGGTCAGGTT	57.998	55.556	0.00	0.00	43.82	3.50
1195	1256	0.593128	GACATGTCAAGGTGGTGTGC	59.407	55.000	21.07	0.00	0.00	4.57
1271	1333	0.689623	GCTCCTCATATCACCCCCAG	59.310	60.000	0.00	0.00	0.00	4.45
1333	1416	2.420058	ATAAAAGAGTGAAGGCCCGG	57.580	50.000	0.00	0.00	0.00	5.73
1361	1447	1.913951	ATCTTGCTCATCGCCCACCA	61.914	55.000	0.00	0.00	38.05	4.17
1390	1476	9.790389	GGTTCTATTGTATTCTATCATAGGACG	57.210	37.037	0.00	0.00	0.00	4.79
1440	1550	1.131638	ACATGCTCGGATACACCCAT	58.868	50.000	0.00	0.00	34.64	4.00
1471	1582	3.979101	TGCACAAGATGATCACTGGTA	57.021	42.857	0.00	0.00	0.00	3.25
1472	1583	2.816087	GTTGCACAAGATGATCACTGGT	59.184	45.455	0.00	0.00	0.00	4.00
1504	1615	4.770010	AGAGCTTTGTAGTCTTGTAGAGCT	59.230	41.667	0.00	0.00	41.50	4.09
1522	1633	4.328118	AGGGGAAATTTTCATCAGAGCT	57.672	40.909	11.09	0.00	0.00	4.09
1523	1634	4.752146	CAAGGGGAAATTTTCATCAGAGC	58.248	43.478	11.09	0.00	0.00	4.09
1524	1635	4.221262	TGCAAGGGGAAATTTTCATCAGAG	59.779	41.667	11.09	0.00	0.00	3.35
1525	1636	4.158786	TGCAAGGGGAAATTTTCATCAGA	58.841	39.130	11.09	0.00	0.00	3.27
1589	1701	6.996969	GCAAGTGCTAATGCTACATGGCATA	61.997	44.000	9.48	0.00	43.73	3.14
1617	1729	6.038936	ACACTCCGCTTACAACAAAGTAAAAT	59.961	34.615	0.00	0.00	33.89	1.82
1637	1749	7.171678	AAGTACATCTTTCTGTGCTTTACACTC	59.828	37.037	0.00	0.00	45.87	3.51
1698	1810	3.487042	CGAATCTGATGCTTTCTGGCAAG	60.487	47.826	0.00	0.00	45.68	4.01
1725	1837	6.649973	AGAATTATCACAGCAGCAGATGTATC	59.350	38.462	0.00	0.00	43.69	2.24
1747	1859	7.169645	GCAAAACTGCAATATGTCAAAGAAGAA	59.830	33.333	0.00	0.00	34.41	2.52
1754	1866	8.087136	TGATTTAGCAAAACTGCAATATGTCAA	58.913	29.630	0.00	0.00	37.25	3.18
1775	1887	4.222336	TGTTCTGGACCCAATTGTGATTT	58.778	39.130	4.43	0.00	0.00	2.17
1783	1895	1.679944	CGAGCATGTTCTGGACCCAAT	60.680	52.381	8.01	0.00	0.00	3.16
1818	1930	1.810151	TCCGTGCTGCAAAATTAGACC	59.190	47.619	2.77	0.00	0.00	3.85
1821	1933	3.426695	CCTCTTCCGTGCTGCAAAATTAG	60.427	47.826	2.77	0.00	0.00	1.73
1857	1969	1.122019	AGTCCTTCTCCGGCAGTGTT	61.122	55.000	0.00	0.00	0.00	3.32
1862	1974	0.614697	TCATGAGTCCTTCTCCGGCA	60.615	55.000	0.00	0.00	42.12	5.69
1904	2017	0.473326	GAGCCTGCCTTGGAGATGAT	59.527	55.000	0.00	0.00	0.00	2.45
1907	2020	0.326427	AGAGAGCCTGCCTTGGAGAT	60.326	55.000	0.00	0.00	0.00	2.75
2018	2131	7.671819	TCCATCCCAGTTGTTTTATATTTGTCA	59.328	33.333	0.00	0.00	0.00	3.58
2026	2139	5.251700	ACTCTCTCCATCCCAGTTGTTTTAT	59.748	40.000	0.00	0.00	0.00	1.40
2042	2155	3.770388	AGCCCTAACAAAGTACTCTCTCC	59.230	47.826	0.00	0.00	0.00	3.71
2165	2278	0.597568	CGAGGAAAACAGCCAATGCA	59.402	50.000	0.00	0.00	41.13	3.96
2179	4754	1.864263	TTCAGGAGAGGGAGCGAGGA	61.864	60.000	0.00	0.00	0.00	3.71
2214	4789	1.043816	CTGTGTGGACTGTGGAGACT	58.956	55.000	0.00	0.00	0.00	3.24
2215	4790	0.601311	GCTGTGTGGACTGTGGAGAC	60.601	60.000	0.00	0.00	0.00	3.36
2216	4791	0.760567	AGCTGTGTGGACTGTGGAGA	60.761	55.000	0.00	0.00	0.00	3.71
2217	4792	0.969149	TAGCTGTGTGGACTGTGGAG	59.031	55.000	0.00	0.00	0.00	3.86
2218	4793	1.344438	CTTAGCTGTGTGGACTGTGGA	59.656	52.381	0.00	0.00	0.00	4.02
2219	4794	1.344438	TCTTAGCTGTGTGGACTGTGG	59.656	52.381	0.00	0.00	0.00	4.17
2220	4795	2.036475	AGTCTTAGCTGTGTGGACTGTG	59.964	50.000	0.00	0.00	36.15	3.66
2221	4796	2.036475	CAGTCTTAGCTGTGTGGACTGT	59.964	50.000	18.93	0.00	44.84	3.55
2222	4797	2.681706	CAGTCTTAGCTGTGTGGACTG	58.318	52.381	15.97	15.97	44.66	3.51
2223	4798	2.598565	TCAGTCTTAGCTGTGTGGACT	58.401	47.619	0.00	0.00	37.69	3.85
2224	4799	3.243907	ACTTCAGTCTTAGCTGTGTGGAC	60.244	47.826	0.00	0.00	37.70	4.02
2227	4802	3.059325	GCAACTTCAGTCTTAGCTGTGTG	60.059	47.826	0.00	0.00	37.70	3.82
2237	4812	6.176014	ACTACCTTTTAGCAACTTCAGTCT	57.824	37.500	0.00	0.00	0.00	3.24
2241	4816	8.186709	ACTACTACTACCTTTTAGCAACTTCA	57.813	34.615	0.00	0.00	0.00	3.02
2257	4832	5.374071	TGCATGCTGCTACTACTACTACTA	58.626	41.667	20.33	0.00	45.31	1.82
2258	4833	4.207955	TGCATGCTGCTACTACTACTACT	58.792	43.478	20.33	0.00	45.31	2.57
2259	4834	4.569761	TGCATGCTGCTACTACTACTAC	57.430	45.455	20.33	0.00	45.31	2.73
2260	4835	4.827284	TGATGCATGCTGCTACTACTACTA	59.173	41.667	20.33	0.00	45.31	1.82
2287	4862	5.235186	GTCATGGCAGTACTAATTAGCTGTG	59.765	44.000	12.54	8.05	0.00	3.66
2288	4863	5.360591	GTCATGGCAGTACTAATTAGCTGT	58.639	41.667	12.54	0.00	0.00	4.40
2289	4864	4.445718	CGTCATGGCAGTACTAATTAGCTG	59.554	45.833	12.54	12.85	0.00	4.24
2290	4865	4.341235	TCGTCATGGCAGTACTAATTAGCT	59.659	41.667	12.54	0.00	0.00	3.32
2291	4866	4.617959	TCGTCATGGCAGTACTAATTAGC	58.382	43.478	12.54	0.00	0.00	3.09
2292	4867	6.199154	CACTTCGTCATGGCAGTACTAATTAG	59.801	42.308	11.05	11.05	0.00	1.73
2294	4869	4.870426	CACTTCGTCATGGCAGTACTAATT	59.130	41.667	0.00	0.00	0.00	1.40
2296	4871	3.368013	CCACTTCGTCATGGCAGTACTAA	60.368	47.826	0.00	0.00	0.00	2.24
2299	4874	1.337823	ACCACTTCGTCATGGCAGTAC	60.338	52.381	0.00	0.00	39.84	2.73
2322	4907	9.339492	CTTCTTTTAGCTAATTTCTCTTTGCAG	57.661	33.333	7.08	0.00	30.65	4.41
2325	4910	9.833182	GGACTTCTTTTAGCTAATTTCTCTTTG	57.167	33.333	7.08	0.00	0.00	2.77
2357	4942	9.952030	TCAGGACAAGATAATAACACACATAAA	57.048	29.630	0.00	0.00	0.00	1.40
2358	4943	9.378551	GTCAGGACAAGATAATAACACACATAA	57.621	33.333	0.00	0.00	0.00	1.90
2363	4948	6.764379	TGTGTCAGGACAAGATAATAACACA	58.236	36.000	3.28	0.00	43.77	3.72

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.