Multiple sequence alignment - TraesCS7D01G033500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G033500 chr7D 100.000 4703 0 0 1 4703 17256771 17261473 0.000000e+00 8685.0
1 TraesCS7D01G033500 chr7D 97.255 255 7 0 4449 4703 52479573 52479319 2.600000e-117 433.0
2 TraesCS7D01G033500 chr7D 96.850 254 8 0 4450 4703 78287640 78287893 4.350000e-115 425.0
3 TraesCS7D01G033500 chr7D 96.498 257 8 1 4447 4703 283976261 283976516 1.560000e-114 424.0
4 TraesCS7D01G033500 chr7A 97.363 4210 80 14 259 4449 16649190 16653387 0.000000e+00 7131.0
5 TraesCS7D01G033500 chr7A 91.080 213 9 5 1 204 16648966 16649177 3.580000e-71 279.0
6 TraesCS7D01G033500 chr4A 91.615 1443 101 2 2690 4117 716997197 716995760 0.000000e+00 1977.0
7 TraesCS7D01G033500 chr4A 84.841 1227 156 17 2709 3911 676544657 676545877 0.000000e+00 1208.0
8 TraesCS7D01G033500 chr4A 86.066 1055 133 10 1689 2736 716998390 716997343 0.000000e+00 1122.0
9 TraesCS7D01G033500 chr4A 89.276 718 54 10 1000 1695 716999175 716998459 0.000000e+00 878.0
10 TraesCS7D01G033500 chr4A 83.487 866 109 17 714 1570 676542505 676543345 0.000000e+00 776.0
11 TraesCS7D01G033500 chr4A 87.398 492 56 2 1850 2335 676543682 676544173 1.140000e-155 560.0
12 TraesCS7D01G033500 chr4A 84.900 351 32 8 2373 2722 676544283 676544613 7.540000e-88 335.0
13 TraesCS7D01G033500 chr4A 78.440 218 31 12 370 582 676542225 676542431 1.370000e-25 128.0
14 TraesCS7D01G033500 chr5D 83.236 1372 184 16 2592 3931 344807793 344806436 0.000000e+00 1218.0
15 TraesCS7D01G033500 chr5D 82.563 1038 131 33 669 1687 344809791 344808785 0.000000e+00 869.0
16 TraesCS7D01G033500 chr5D 86.076 790 99 8 1844 2623 344808601 344807813 0.000000e+00 839.0
17 TraesCS7D01G033500 chr5D 97.266 256 7 0 4448 4703 431646412 431646667 7.230000e-118 435.0
18 TraesCS7D01G033500 chr5D 97.600 250 6 0 4450 4699 324638998 324639247 3.360000e-116 429.0
19 TraesCS7D01G033500 chr5D 96.850 254 8 0 4450 4703 398509479 398509226 4.350000e-115 425.0
20 TraesCS7D01G033500 chr5D 78.827 307 48 13 4098 4396 61024076 61023779 1.730000e-44 191.0
21 TraesCS7D01G033500 chr5D 77.483 151 20 10 370 519 344810101 344809964 1.400000e-10 78.7
22 TraesCS7D01G033500 chr5B 83.164 1378 181 19 2592 3931 406949842 406951206 0.000000e+00 1212.0
23 TraesCS7D01G033500 chr5B 83.285 1035 123 35 662 1689 406947841 406948832 0.000000e+00 907.0
24 TraesCS7D01G033500 chr5B 85.696 790 98 12 1844 2623 406949014 406949798 0.000000e+00 819.0
25 TraesCS7D01G033500 chr5B 80.925 173 25 6 4227 4396 69805664 69805831 3.820000e-26 130.0
26 TraesCS7D01G033500 chr4D 96.863 255 8 0 4449 4703 25183902 25183648 1.210000e-115 427.0
27 TraesCS7D01G033500 chr4D 96.875 256 7 1 4448 4703 498097745 498097491 1.210000e-115 427.0
28 TraesCS7D01G033500 chr6D 97.211 251 7 0 4449 4699 22276949 22277199 4.350000e-115 425.0
29 TraesCS7D01G033500 chr1D 73.525 729 163 26 1844 2557 486755903 486756616 2.810000e-62 250.0
30 TraesCS7D01G033500 chr2B 81.609 174 27 3 4220 4392 244696844 244697013 6.350000e-29 139.0
31 TraesCS7D01G033500 chr6A 100.000 28 0 0 2239 2266 213783577 213783604 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G033500 chr7D 17256771 17261473 4702 False 8685.000000 8685 100.000000 1 4703 1 chr7D.!!$F1 4702
1 TraesCS7D01G033500 chr7A 16648966 16653387 4421 False 3705.000000 7131 94.221500 1 4449 2 chr7A.!!$F1 4448
2 TraesCS7D01G033500 chr4A 716995760 716999175 3415 True 1325.666667 1977 88.985667 1000 4117 3 chr4A.!!$R1 3117
3 TraesCS7D01G033500 chr4A 676542225 676545877 3652 False 601.400000 1208 83.813200 370 3911 5 chr4A.!!$F1 3541
4 TraesCS7D01G033500 chr5D 344806436 344810101 3665 True 751.175000 1218 82.339500 370 3931 4 chr5D.!!$R3 3561
5 TraesCS7D01G033500 chr5B 406947841 406951206 3365 False 979.333333 1212 84.048333 662 3931 3 chr5B.!!$F2 3269
6 TraesCS7D01G033500 chr1D 486755903 486756616 713 False 250.000000 250 73.525000 1844 2557 1 chr1D.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 229 0.037790 GGTCGAGGATATGCTCTGGC 60.038 60.000 20.42 15.05 39.26 4.85 F
300 309 0.179073 CAGAGCCGTTACTCCATGGG 60.179 60.000 13.02 5.22 37.39 4.00 F
411 426 0.322098 CCCAGGTACCGACAATGCAA 60.322 55.000 6.18 0.00 0.00 4.08 F
1384 1452 1.270358 GGAGGAACGTGTTCAAGCTCT 60.270 52.381 14.16 2.16 41.20 4.09 F
2304 2590 0.392461 GGACACGCTTAATCCTGGCA 60.392 55.000 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2270 1.424302 CTCCATGATCCTGAGGGCATT 59.576 52.381 0.0 0.0 0.00 3.56 R
2092 2378 2.119801 ATGGTCAGCATGGACAGAAC 57.880 50.000 0.0 0.0 39.59 3.01 R
2304 2590 3.453717 ACCTCATCTGCACATACTCACAT 59.546 43.478 0.0 0.0 0.00 3.21 R
2777 3516 0.097325 GTTGACGCCGTGTTTTGTCA 59.903 50.000 0.0 0.0 39.42 3.58 R
4031 4826 1.020861 AACGGTTACGGGCGGAAATC 61.021 55.000 0.0 0.0 46.48 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.420222 TGTATGGCCTTGTTGAATAATAATTGG 58.580 33.333 3.32 0.00 0.00 3.16
61 62 1.568612 ATGGTTGTGTGCTTCGCTCG 61.569 55.000 0.00 0.00 0.00 5.03
75 76 2.415010 CTCGATGCAGAGACCGGG 59.585 66.667 6.32 0.00 40.57 5.73
154 155 0.249826 TTGTCAGACACGCATGCTCA 60.250 50.000 17.13 0.00 0.00 4.26
163 164 2.277969 CACGCATGCTCAGATCTTCTT 58.722 47.619 17.13 0.00 0.00 2.52
164 165 2.284684 CACGCATGCTCAGATCTTCTTC 59.715 50.000 17.13 0.00 0.00 2.87
167 176 3.533547 GCATGCTCAGATCTTCTTCAGT 58.466 45.455 11.37 0.00 0.00 3.41
175 184 4.020751 TCAGATCTTCTTCAGTCCACAAGG 60.021 45.833 0.00 0.00 0.00 3.61
204 213 8.251721 ACAAAGTATATATTGCCTATCGAGGTC 58.748 37.037 0.00 0.00 45.78 3.85
215 224 3.727738 TCGAGGTCGAGGATATGCT 57.272 52.632 0.00 0.00 44.22 3.79
216 225 1.524848 TCGAGGTCGAGGATATGCTC 58.475 55.000 13.90 13.90 44.22 4.26
217 226 1.072489 TCGAGGTCGAGGATATGCTCT 59.928 52.381 20.42 3.20 44.22 4.09
218 227 1.198867 CGAGGTCGAGGATATGCTCTG 59.801 57.143 20.42 14.18 43.02 3.35
219 228 1.543802 GAGGTCGAGGATATGCTCTGG 59.456 57.143 20.42 7.60 0.00 3.86
220 229 0.037790 GGTCGAGGATATGCTCTGGC 60.038 60.000 20.42 15.05 39.26 4.85
221 230 0.965439 GTCGAGGATATGCTCTGGCT 59.035 55.000 20.42 0.00 39.59 4.75
222 231 2.163509 GTCGAGGATATGCTCTGGCTA 58.836 52.381 20.42 0.40 39.59 3.93
223 232 2.163412 GTCGAGGATATGCTCTGGCTAG 59.837 54.545 20.42 5.59 39.59 3.42
224 233 2.166829 CGAGGATATGCTCTGGCTAGT 58.833 52.381 20.42 0.00 39.59 2.57
225 234 2.094803 CGAGGATATGCTCTGGCTAGTG 60.095 54.545 20.42 0.00 39.59 2.74
226 235 2.233431 GAGGATATGCTCTGGCTAGTGG 59.767 54.545 16.38 0.00 39.59 4.00
227 236 1.974236 GGATATGCTCTGGCTAGTGGT 59.026 52.381 0.00 0.00 39.59 4.16
228 237 2.028567 GGATATGCTCTGGCTAGTGGTC 60.029 54.545 0.00 0.00 39.59 4.02
229 238 1.414158 TATGCTCTGGCTAGTGGTCC 58.586 55.000 0.00 0.00 39.59 4.46
230 239 0.326048 ATGCTCTGGCTAGTGGTCCT 60.326 55.000 0.00 0.00 39.59 3.85
231 240 1.260538 TGCTCTGGCTAGTGGTCCTG 61.261 60.000 0.00 0.00 39.59 3.86
232 241 0.972983 GCTCTGGCTAGTGGTCCTGA 60.973 60.000 0.00 0.00 35.22 3.86
233 242 1.786937 CTCTGGCTAGTGGTCCTGAT 58.213 55.000 0.00 0.00 31.37 2.90
234 243 1.411977 CTCTGGCTAGTGGTCCTGATG 59.588 57.143 0.00 0.00 31.37 3.07
235 244 1.007118 TCTGGCTAGTGGTCCTGATGA 59.993 52.381 0.00 0.00 0.00 2.92
236 245 2.045524 CTGGCTAGTGGTCCTGATGAT 58.954 52.381 0.00 0.00 0.00 2.45
237 246 2.036992 CTGGCTAGTGGTCCTGATGATC 59.963 54.545 0.00 0.00 0.00 2.92
238 247 2.324541 GGCTAGTGGTCCTGATGATCT 58.675 52.381 0.00 0.00 0.00 2.75
239 248 2.703007 GGCTAGTGGTCCTGATGATCTT 59.297 50.000 0.00 0.00 0.00 2.40
240 249 3.898123 GGCTAGTGGTCCTGATGATCTTA 59.102 47.826 0.00 0.00 0.00 2.10
241 250 4.345257 GGCTAGTGGTCCTGATGATCTTAA 59.655 45.833 0.00 0.00 0.00 1.85
242 251 5.012561 GGCTAGTGGTCCTGATGATCTTAAT 59.987 44.000 0.00 0.00 0.00 1.40
243 252 5.931146 GCTAGTGGTCCTGATGATCTTAATG 59.069 44.000 0.00 0.00 0.00 1.90
244 253 6.239430 GCTAGTGGTCCTGATGATCTTAATGA 60.239 42.308 0.00 0.00 0.00 2.57
245 254 6.760440 AGTGGTCCTGATGATCTTAATGAT 57.240 37.500 0.00 0.00 38.27 2.45
246 255 6.531923 AGTGGTCCTGATGATCTTAATGATG 58.468 40.000 0.00 0.00 35.14 3.07
247 256 6.328410 AGTGGTCCTGATGATCTTAATGATGA 59.672 38.462 0.00 0.00 35.14 2.92
248 257 6.994496 GTGGTCCTGATGATCTTAATGATGAA 59.006 38.462 0.00 0.00 35.14 2.57
249 258 7.172875 GTGGTCCTGATGATCTTAATGATGAAG 59.827 40.741 0.00 0.00 35.14 3.02
250 259 6.149142 GGTCCTGATGATCTTAATGATGAAGC 59.851 42.308 0.00 0.00 35.14 3.86
251 260 6.149142 GTCCTGATGATCTTAATGATGAAGCC 59.851 42.308 0.00 0.00 35.14 4.35
252 261 6.044054 TCCTGATGATCTTAATGATGAAGCCT 59.956 38.462 0.00 0.00 35.14 4.58
253 262 6.372103 CCTGATGATCTTAATGATGAAGCCTC 59.628 42.308 0.00 0.00 35.14 4.70
254 263 5.930569 TGATGATCTTAATGATGAAGCCTCG 59.069 40.000 0.00 0.00 35.14 4.63
255 264 5.282055 TGATCTTAATGATGAAGCCTCGT 57.718 39.130 0.00 0.00 35.14 4.18
256 265 5.052481 TGATCTTAATGATGAAGCCTCGTG 58.948 41.667 0.00 0.00 35.14 4.35
257 266 4.471904 TCTTAATGATGAAGCCTCGTGT 57.528 40.909 0.00 0.00 0.00 4.49
300 309 0.179073 CAGAGCCGTTACTCCATGGG 60.179 60.000 13.02 5.22 37.39 4.00
345 354 0.824595 TTCGGGTGTCGTCTCTCCAA 60.825 55.000 0.00 0.00 40.32 3.53
411 426 0.322098 CCCAGGTACCGACAATGCAA 60.322 55.000 6.18 0.00 0.00 4.08
566 617 1.876714 CGCAGGTACGGTTCCGATG 60.877 63.158 18.28 11.06 0.00 3.84
596 647 3.258872 TGCACAAATTGGCTTAGCTGAAT 59.741 39.130 3.59 0.16 0.00 2.57
604 656 4.637483 TGGCTTAGCTGAATTATTGTGC 57.363 40.909 3.59 0.00 0.00 4.57
906 963 7.639945 AGTTTTTGTGAACTGTGACTATTAGC 58.360 34.615 0.00 0.00 38.39 3.09
907 964 7.499232 AGTTTTTGTGAACTGTGACTATTAGCT 59.501 33.333 0.00 0.00 38.39 3.32
908 965 8.770828 GTTTTTGTGAACTGTGACTATTAGCTA 58.229 33.333 0.00 0.00 0.00 3.32
909 966 8.534333 TTTTGTGAACTGTGACTATTAGCTAG 57.466 34.615 0.00 0.00 0.00 3.42
942 1008 5.592104 TTTCTTGAGAAAGGGGTGTTTTC 57.408 39.130 2.16 0.00 38.94 2.29
1384 1452 1.270358 GGAGGAACGTGTTCAAGCTCT 60.270 52.381 14.16 2.16 41.20 4.09
1839 2085 1.692519 GGCGATACACCTACCCAGAAT 59.307 52.381 0.00 0.00 0.00 2.40
2092 2378 1.479709 ATCTCTCTTCGTCACCCTGG 58.520 55.000 0.00 0.00 0.00 4.45
2304 2590 0.392461 GGACACGCTTAATCCTGGCA 60.392 55.000 0.00 0.00 0.00 4.92
2777 3516 0.175302 CTCTGCGAGATGGAGCTTGT 59.825 55.000 0.00 0.00 35.70 3.16
2949 3688 3.305608 CCAAGTCAAGTGAGAATTTGCCC 60.306 47.826 0.00 0.00 0.00 5.36
3134 3873 6.070824 TGTGATTCATTAGAGAGCAGGTACAA 60.071 38.462 0.00 0.00 0.00 2.41
3138 3877 7.672983 TTCATTAGAGAGCAGGTACAAAAAG 57.327 36.000 0.00 0.00 0.00 2.27
3237 3979 2.489722 GGAACTGCTCAATCTTCCAACC 59.510 50.000 0.00 0.00 33.60 3.77
3303 4051 2.013400 CTTATACACATTGCGCCCACA 58.987 47.619 4.18 0.00 0.00 4.17
3354 4102 3.491766 TCTGGAGGGGAGTTCATAACT 57.508 47.619 0.00 0.00 46.38 2.24
3452 4215 4.122776 CCTCAGAATAATGGTGTCGGAAG 58.877 47.826 0.00 0.00 0.00 3.46
3611 4380 5.930837 AGAATGGAGGAAACAGAGAGTAG 57.069 43.478 0.00 0.00 0.00 2.57
4031 4826 5.589050 GCTAAGGGTTAAAGTGGTTAGGATG 59.411 44.000 0.00 0.00 0.00 3.51
4117 4912 9.658799 CGAGTTTGATTGATAGGATATGGTATT 57.341 33.333 0.00 0.00 0.00 1.89
4189 4984 9.479549 AATCCGGCATTTTAATTATGGATATCT 57.520 29.630 0.00 0.00 34.02 1.98
4227 5022 9.989869 GAAATTTGAAGTACTAAGTAGCAATCC 57.010 33.333 0.00 0.00 0.00 3.01
4228 5023 9.515226 AAATTTGAAGTACTAAGTAGCAATCCA 57.485 29.630 0.00 0.00 0.00 3.41
4321 5116 8.730680 ACCTTGTAATGCTTTATGTGTTCTTAG 58.269 33.333 0.00 0.00 0.00 2.18
4401 5196 8.954950 AGCATTTATATATTCCTCATTCCTCG 57.045 34.615 0.00 0.00 0.00 4.63
4421 5216 4.062293 TCGTCCAGTTTCCAATGTTAGTG 58.938 43.478 0.00 0.00 0.00 2.74
4441 5236 5.063880 AGTGTGTTCTAAGGATTTGTGGTC 58.936 41.667 0.00 0.00 0.00 4.02
4445 5240 3.604875 TCTAAGGATTTGTGGTCGGAC 57.395 47.619 0.00 0.00 0.00 4.79
4449 5244 1.495951 GATTTGTGGTCGGACGTGC 59.504 57.895 0.00 0.00 0.00 5.34
4450 5245 1.225376 GATTTGTGGTCGGACGTGCA 61.225 55.000 8.11 0.00 0.00 4.57
4451 5246 1.503818 ATTTGTGGTCGGACGTGCAC 61.504 55.000 6.82 6.82 0.00 4.57
4452 5247 2.581208 TTTGTGGTCGGACGTGCACT 62.581 55.000 16.19 1.46 0.00 4.40
4453 5248 1.736365 TTGTGGTCGGACGTGCACTA 61.736 55.000 16.19 0.00 0.00 2.74
4454 5249 1.443872 GTGGTCGGACGTGCACTAG 60.444 63.158 16.19 2.33 0.00 2.57
4455 5250 1.900016 TGGTCGGACGTGCACTAGT 60.900 57.895 16.19 6.14 0.00 2.57
4456 5251 0.606130 TGGTCGGACGTGCACTAGTA 60.606 55.000 16.19 0.00 0.00 1.82
4457 5252 0.179179 GGTCGGACGTGCACTAGTAC 60.179 60.000 16.19 6.14 0.00 2.73
4458 5253 0.518636 GTCGGACGTGCACTAGTACA 59.481 55.000 16.19 0.00 0.00 2.90
4459 5254 1.069022 GTCGGACGTGCACTAGTACAA 60.069 52.381 16.19 0.00 0.00 2.41
4460 5255 1.608109 TCGGACGTGCACTAGTACAAA 59.392 47.619 16.19 0.00 0.00 2.83
4461 5256 2.034432 TCGGACGTGCACTAGTACAAAA 59.966 45.455 16.19 0.00 0.00 2.44
4462 5257 2.154389 CGGACGTGCACTAGTACAAAAC 59.846 50.000 16.19 0.00 0.00 2.43
4463 5258 3.125316 GGACGTGCACTAGTACAAAACA 58.875 45.455 16.19 0.00 0.00 2.83
4464 5259 3.556775 GGACGTGCACTAGTACAAAACAA 59.443 43.478 16.19 0.00 0.00 2.83
4465 5260 4.318546 GGACGTGCACTAGTACAAAACAAG 60.319 45.833 16.19 0.00 0.00 3.16
4466 5261 3.558418 ACGTGCACTAGTACAAAACAAGG 59.442 43.478 16.19 0.00 0.00 3.61
4467 5262 3.606153 CGTGCACTAGTACAAAACAAGGC 60.606 47.826 16.19 0.00 0.00 4.35
4468 5263 3.564225 GTGCACTAGTACAAAACAAGGCT 59.436 43.478 10.32 0.00 0.00 4.58
4469 5264 4.036380 GTGCACTAGTACAAAACAAGGCTT 59.964 41.667 10.32 0.00 0.00 4.35
4470 5265 4.642885 TGCACTAGTACAAAACAAGGCTTT 59.357 37.500 0.00 0.00 0.00 3.51
4471 5266 5.212934 GCACTAGTACAAAACAAGGCTTTC 58.787 41.667 0.00 0.00 0.00 2.62
4472 5267 5.220970 GCACTAGTACAAAACAAGGCTTTCA 60.221 40.000 0.00 0.00 0.00 2.69
4473 5268 6.515035 GCACTAGTACAAAACAAGGCTTTCAT 60.515 38.462 0.00 0.00 0.00 2.57
4474 5269 7.078228 CACTAGTACAAAACAAGGCTTTCATC 58.922 38.462 0.00 0.00 0.00 2.92
4475 5270 6.770785 ACTAGTACAAAACAAGGCTTTCATCA 59.229 34.615 0.00 0.00 0.00 3.07
4476 5271 5.831997 AGTACAAAACAAGGCTTTCATCAC 58.168 37.500 0.00 0.00 0.00 3.06
4477 5272 4.734398 ACAAAACAAGGCTTTCATCACA 57.266 36.364 0.00 0.00 0.00 3.58
4478 5273 4.685924 ACAAAACAAGGCTTTCATCACAG 58.314 39.130 0.00 0.00 0.00 3.66
4479 5274 4.053295 CAAAACAAGGCTTTCATCACAGG 58.947 43.478 0.00 0.00 0.00 4.00
4480 5275 1.915141 ACAAGGCTTTCATCACAGGG 58.085 50.000 0.00 0.00 0.00 4.45
4481 5276 0.529378 CAAGGCTTTCATCACAGGGC 59.471 55.000 0.00 0.00 0.00 5.19
4482 5277 0.112995 AAGGCTTTCATCACAGGGCA 59.887 50.000 0.00 0.00 0.00 5.36
4483 5278 0.112995 AGGCTTTCATCACAGGGCAA 59.887 50.000 0.00 0.00 0.00 4.52
4484 5279 1.188863 GGCTTTCATCACAGGGCAAT 58.811 50.000 0.00 0.00 0.00 3.56
4485 5280 2.025037 AGGCTTTCATCACAGGGCAATA 60.025 45.455 0.00 0.00 0.00 1.90
4486 5281 2.961062 GGCTTTCATCACAGGGCAATAT 59.039 45.455 0.00 0.00 0.00 1.28
4487 5282 3.385755 GGCTTTCATCACAGGGCAATATT 59.614 43.478 0.00 0.00 0.00 1.28
4488 5283 4.500375 GGCTTTCATCACAGGGCAATATTC 60.500 45.833 0.00 0.00 0.00 1.75
4489 5284 4.098349 GCTTTCATCACAGGGCAATATTCA 59.902 41.667 0.00 0.00 0.00 2.57
4490 5285 5.581126 TTTCATCACAGGGCAATATTCAC 57.419 39.130 0.00 0.00 0.00 3.18
4491 5286 4.233632 TCATCACAGGGCAATATTCACA 57.766 40.909 0.00 0.00 0.00 3.58
4492 5287 4.795469 TCATCACAGGGCAATATTCACAT 58.205 39.130 0.00 0.00 0.00 3.21
4493 5288 5.202765 TCATCACAGGGCAATATTCACATT 58.797 37.500 0.00 0.00 0.00 2.71
4494 5289 6.363882 TCATCACAGGGCAATATTCACATTA 58.636 36.000 0.00 0.00 0.00 1.90
4495 5290 6.487668 TCATCACAGGGCAATATTCACATTAG 59.512 38.462 0.00 0.00 0.00 1.73
4496 5291 5.754782 TCACAGGGCAATATTCACATTAGT 58.245 37.500 0.00 0.00 0.00 2.24
4497 5292 5.822519 TCACAGGGCAATATTCACATTAGTC 59.177 40.000 0.00 0.00 0.00 2.59
4498 5293 5.009010 CACAGGGCAATATTCACATTAGTCC 59.991 44.000 0.00 0.00 0.00 3.85
4499 5294 4.520492 CAGGGCAATATTCACATTAGTCCC 59.480 45.833 0.00 0.00 0.00 4.46
4500 5295 3.502211 GGGCAATATTCACATTAGTCCCG 59.498 47.826 0.00 0.00 0.00 5.14
4501 5296 3.502211 GGCAATATTCACATTAGTCCCGG 59.498 47.826 0.00 0.00 0.00 5.73
4502 5297 4.134563 GCAATATTCACATTAGTCCCGGT 58.865 43.478 0.00 0.00 0.00 5.28
4503 5298 4.578928 GCAATATTCACATTAGTCCCGGTT 59.421 41.667 0.00 0.00 0.00 4.44
4504 5299 5.277828 GCAATATTCACATTAGTCCCGGTTC 60.278 44.000 0.00 0.00 0.00 3.62
4505 5300 3.992943 ATTCACATTAGTCCCGGTTCA 57.007 42.857 0.00 0.00 0.00 3.18
4506 5301 3.328382 TTCACATTAGTCCCGGTTCAG 57.672 47.619 0.00 0.00 0.00 3.02
4507 5302 2.253610 TCACATTAGTCCCGGTTCAGT 58.746 47.619 0.00 0.00 0.00 3.41
4508 5303 2.232941 TCACATTAGTCCCGGTTCAGTC 59.767 50.000 0.00 0.00 0.00 3.51
4509 5304 2.028476 CACATTAGTCCCGGTTCAGTCA 60.028 50.000 0.00 0.00 0.00 3.41
4510 5305 2.028385 ACATTAGTCCCGGTTCAGTCAC 60.028 50.000 0.00 0.00 0.00 3.67
4511 5306 0.599558 TTAGTCCCGGTTCAGTCACG 59.400 55.000 0.00 0.00 0.00 4.35
4512 5307 0.250858 TAGTCCCGGTTCAGTCACGA 60.251 55.000 0.00 0.00 0.00 4.35
4513 5308 1.111116 AGTCCCGGTTCAGTCACGAA 61.111 55.000 0.00 0.00 0.00 3.85
4514 5309 0.942884 GTCCCGGTTCAGTCACGAAC 60.943 60.000 0.00 4.51 43.75 3.95
4518 5313 3.946907 GTTCAGTCACGAACCGGG 58.053 61.111 6.32 0.00 39.52 5.73
4519 5314 1.364901 GTTCAGTCACGAACCGGGA 59.635 57.895 6.32 0.00 39.52 5.14
4526 5321 1.259609 TCACGAACCGGGACTAATGT 58.740 50.000 6.32 0.00 32.99 2.71
4527 5322 1.067425 TCACGAACCGGGACTAATGTG 60.067 52.381 6.32 4.66 32.99 3.21
4528 5323 1.067425 CACGAACCGGGACTAATGTGA 60.067 52.381 6.32 0.00 28.17 3.58
4529 5324 1.203994 ACGAACCGGGACTAATGTGAG 59.796 52.381 6.32 0.00 0.00 3.51
4530 5325 1.653151 GAACCGGGACTAATGTGAGC 58.347 55.000 6.32 0.00 0.00 4.26
4531 5326 0.981183 AACCGGGACTAATGTGAGCA 59.019 50.000 6.32 0.00 0.00 4.26
4532 5327 1.204146 ACCGGGACTAATGTGAGCAT 58.796 50.000 6.32 0.00 36.80 3.79
4533 5328 1.559682 ACCGGGACTAATGTGAGCATT 59.440 47.619 6.32 0.00 46.14 3.56
4534 5329 1.942657 CCGGGACTAATGTGAGCATTG 59.057 52.381 0.00 0.00 44.32 2.82
4535 5330 1.942657 CGGGACTAATGTGAGCATTGG 59.057 52.381 3.39 3.10 44.32 3.16
4540 5335 1.942657 CTAATGTGAGCATTGGTCCCG 59.057 52.381 12.99 0.00 44.32 5.14
4541 5336 0.327924 AATGTGAGCATTGGTCCCGA 59.672 50.000 12.99 0.00 43.12 5.14
4542 5337 0.548031 ATGTGAGCATTGGTCCCGAT 59.452 50.000 12.99 0.34 29.54 4.18
4543 5338 0.327924 TGTGAGCATTGGTCCCGATT 59.672 50.000 12.99 0.00 0.00 3.34
4544 5339 1.017387 GTGAGCATTGGTCCCGATTC 58.983 55.000 12.99 0.00 0.00 2.52
4545 5340 0.461870 TGAGCATTGGTCCCGATTCG 60.462 55.000 12.99 0.00 0.00 3.34
4546 5341 0.462047 GAGCATTGGTCCCGATTCGT 60.462 55.000 4.48 0.00 0.00 3.85
4547 5342 0.744414 AGCATTGGTCCCGATTCGTG 60.744 55.000 5.20 0.00 0.00 4.35
4548 5343 1.721487 CATTGGTCCCGATTCGTGC 59.279 57.895 5.20 0.00 0.00 5.34
4549 5344 1.813753 ATTGGTCCCGATTCGTGCG 60.814 57.895 5.20 0.00 0.00 5.34
4555 5350 3.309675 CCGATTCGTGCGGCTAAG 58.690 61.111 5.20 0.00 42.55 2.18
4556 5351 2.237751 CCGATTCGTGCGGCTAAGG 61.238 63.158 5.20 0.00 42.55 2.69
4557 5352 2.871427 CGATTCGTGCGGCTAAGGC 61.871 63.158 0.00 0.00 37.82 4.35
4558 5353 1.813753 GATTCGTGCGGCTAAGGCA 60.814 57.895 0.00 0.00 40.87 4.75
4559 5354 1.153168 ATTCGTGCGGCTAAGGCAT 60.153 52.632 0.00 0.00 43.19 4.40
4560 5355 0.748005 ATTCGTGCGGCTAAGGCATT 60.748 50.000 0.00 0.00 43.19 3.56
4561 5356 0.108089 TTCGTGCGGCTAAGGCATTA 60.108 50.000 0.00 0.00 43.19 1.90
4562 5357 0.529773 TCGTGCGGCTAAGGCATTAG 60.530 55.000 13.70 13.70 43.19 1.73
4563 5358 0.810031 CGTGCGGCTAAGGCATTAGT 60.810 55.000 18.55 0.00 43.19 2.24
4564 5359 0.938008 GTGCGGCTAAGGCATTAGTC 59.062 55.000 18.55 15.72 43.19 2.59
4565 5360 0.179056 TGCGGCTAAGGCATTAGTCC 60.179 55.000 16.40 16.54 39.96 3.85
4566 5361 0.885150 GCGGCTAAGGCATTAGTCCC 60.885 60.000 16.40 10.33 39.96 4.46
4567 5362 0.600255 CGGCTAAGGCATTAGTCCCG 60.600 60.000 16.40 17.46 39.96 5.14
4568 5363 0.250338 GGCTAAGGCATTAGTCCCGG 60.250 60.000 18.55 0.00 40.55 5.73
4569 5364 0.468648 GCTAAGGCATTAGTCCCGGT 59.531 55.000 18.55 0.00 40.55 5.28
4570 5365 1.134189 GCTAAGGCATTAGTCCCGGTT 60.134 52.381 18.55 0.00 40.55 4.44
4571 5366 2.835027 CTAAGGCATTAGTCCCGGTTC 58.165 52.381 9.96 0.00 34.77 3.62
4572 5367 0.988832 AAGGCATTAGTCCCGGTTCA 59.011 50.000 0.00 0.00 0.00 3.18
4573 5368 0.252197 AGGCATTAGTCCCGGTTCAC 59.748 55.000 0.00 0.00 0.00 3.18
4574 5369 0.746923 GGCATTAGTCCCGGTTCACC 60.747 60.000 0.00 0.00 0.00 4.02
4575 5370 0.252197 GCATTAGTCCCGGTTCACCT 59.748 55.000 0.00 0.00 0.00 4.00
4576 5371 2.012051 GCATTAGTCCCGGTTCACCTG 61.012 57.143 0.00 0.00 0.00 4.00
4577 5372 0.909623 ATTAGTCCCGGTTCACCTGG 59.090 55.000 0.00 0.00 41.25 4.45
4578 5373 1.196104 TTAGTCCCGGTTCACCTGGG 61.196 60.000 15.89 15.89 45.27 4.45
4579 5374 4.717313 GTCCCGGTTCACCTGGGC 62.717 72.222 16.78 7.94 44.29 5.36
4583 5378 3.966543 CGGTTCACCTGGGCCCTT 61.967 66.667 25.70 3.96 0.00 3.95
4584 5379 2.526110 GGTTCACCTGGGCCCTTT 59.474 61.111 25.70 3.52 0.00 3.11
4585 5380 1.771646 GGTTCACCTGGGCCCTTTA 59.228 57.895 25.70 0.48 0.00 1.85
4586 5381 0.323451 GGTTCACCTGGGCCCTTTAG 60.323 60.000 25.70 12.48 0.00 1.85
4587 5382 0.404426 GTTCACCTGGGCCCTTTAGT 59.596 55.000 25.70 12.09 0.00 2.24
4588 5383 0.696501 TTCACCTGGGCCCTTTAGTC 59.303 55.000 25.70 0.00 0.00 2.59
4589 5384 1.205460 TCACCTGGGCCCTTTAGTCC 61.205 60.000 25.70 0.00 0.00 3.85
4590 5385 1.929088 ACCTGGGCCCTTTAGTCCC 60.929 63.158 25.70 0.00 40.47 4.46
4592 5387 3.835134 TGGGCCCTTTAGTCCCAG 58.165 61.111 25.70 0.00 44.62 4.45
4593 5388 1.151677 TGGGCCCTTTAGTCCCAGT 60.152 57.895 25.70 0.00 44.62 4.00
4594 5389 0.774491 TGGGCCCTTTAGTCCCAGTT 60.774 55.000 25.70 0.00 44.62 3.16
4595 5390 0.323451 GGGCCCTTTAGTCCCAGTTG 60.323 60.000 17.04 0.00 39.82 3.16
4596 5391 0.323451 GGCCCTTTAGTCCCAGTTGG 60.323 60.000 0.00 0.00 0.00 3.77
4597 5392 0.404426 GCCCTTTAGTCCCAGTTGGT 59.596 55.000 0.00 0.00 34.77 3.67
4598 5393 1.886655 GCCCTTTAGTCCCAGTTGGTG 60.887 57.143 0.00 0.00 34.77 4.17
4599 5394 1.534729 CCTTTAGTCCCAGTTGGTGC 58.465 55.000 0.00 0.00 34.77 5.01
4600 5395 1.534729 CTTTAGTCCCAGTTGGTGCC 58.465 55.000 0.00 0.00 34.77 5.01
4601 5396 0.847373 TTTAGTCCCAGTTGGTGCCA 59.153 50.000 0.00 0.00 34.77 4.92
4602 5397 0.109723 TTAGTCCCAGTTGGTGCCAC 59.890 55.000 0.00 0.00 34.77 5.01
4603 5398 2.107041 TAGTCCCAGTTGGTGCCACG 62.107 60.000 0.00 0.00 34.77 4.94
4604 5399 3.164977 TCCCAGTTGGTGCCACGA 61.165 61.111 0.00 0.00 34.77 4.35
4605 5400 2.203280 CCCAGTTGGTGCCACGAA 60.203 61.111 0.00 0.00 0.00 3.85
4606 5401 2.551912 CCCAGTTGGTGCCACGAAC 61.552 63.158 14.04 14.04 37.12 3.95
4607 5402 2.551912 CCAGTTGGTGCCACGAACC 61.552 63.158 17.57 0.00 37.50 3.62
4608 5403 2.590575 AGTTGGTGCCACGAACCG 60.591 61.111 17.57 0.00 37.50 4.44
4609 5404 3.656045 GTTGGTGCCACGAACCGG 61.656 66.667 11.21 0.00 40.86 5.28
4610 5405 4.939368 TTGGTGCCACGAACCGGG 62.939 66.667 6.32 0.00 40.86 5.73
4613 5408 4.309950 GTGCCACGAACCGGGACT 62.310 66.667 6.32 0.00 41.35 3.85
4614 5409 2.601067 TGCCACGAACCGGGACTA 60.601 61.111 6.32 0.00 28.17 2.59
4615 5410 2.208619 TGCCACGAACCGGGACTAA 61.209 57.895 6.32 0.00 28.17 2.24
4616 5411 1.004679 GCCACGAACCGGGACTAAA 60.005 57.895 6.32 0.00 28.17 1.85
4617 5412 1.017701 GCCACGAACCGGGACTAAAG 61.018 60.000 6.32 0.00 28.17 1.85
4618 5413 0.390735 CCACGAACCGGGACTAAAGG 60.391 60.000 6.32 0.00 28.17 3.11
4619 5414 0.390735 CACGAACCGGGACTAAAGGG 60.391 60.000 6.32 0.00 28.17 3.95
4620 5415 0.833409 ACGAACCGGGACTAAAGGGT 60.833 55.000 6.32 0.00 0.00 4.34
4621 5416 0.390735 CGAACCGGGACTAAAGGGTG 60.391 60.000 6.32 0.00 31.96 4.61
4622 5417 0.675837 GAACCGGGACTAAAGGGTGC 60.676 60.000 6.32 0.00 31.96 5.01
4623 5418 2.125269 CCGGGACTAAAGGGTGCG 60.125 66.667 0.00 0.00 0.00 5.34
4624 5419 2.652095 CCGGGACTAAAGGGTGCGA 61.652 63.158 0.00 0.00 0.00 5.10
4625 5420 1.520666 CGGGACTAAAGGGTGCGAT 59.479 57.895 0.00 0.00 0.00 4.58
4626 5421 0.810031 CGGGACTAAAGGGTGCGATG 60.810 60.000 0.00 0.00 0.00 3.84
4627 5422 1.095807 GGGACTAAAGGGTGCGATGC 61.096 60.000 0.00 0.00 0.00 3.91
4628 5423 1.095807 GGACTAAAGGGTGCGATGCC 61.096 60.000 0.00 0.00 0.00 4.40
4629 5424 1.077716 ACTAAAGGGTGCGATGCCC 60.078 57.895 1.67 1.67 46.43 5.36
4634 5429 3.749981 GGGTGCGATGCCCATTAG 58.250 61.111 4.76 0.00 45.40 1.73
4635 5430 1.152963 GGGTGCGATGCCCATTAGT 60.153 57.895 4.76 0.00 45.40 2.24
4636 5431 1.166531 GGGTGCGATGCCCATTAGTC 61.167 60.000 4.76 0.00 45.40 2.59
4637 5432 1.166531 GGTGCGATGCCCATTAGTCC 61.167 60.000 0.00 0.00 0.00 3.85
4638 5433 1.148273 TGCGATGCCCATTAGTCCC 59.852 57.895 0.00 0.00 0.00 4.46
4639 5434 1.961277 GCGATGCCCATTAGTCCCG 60.961 63.158 0.00 0.00 0.00 5.14
4640 5435 1.301716 CGATGCCCATTAGTCCCGG 60.302 63.158 0.00 0.00 0.00 5.73
4641 5436 1.837090 GATGCCCATTAGTCCCGGT 59.163 57.895 0.00 0.00 0.00 5.28
4642 5437 0.182775 GATGCCCATTAGTCCCGGTT 59.817 55.000 0.00 0.00 0.00 4.44
4643 5438 0.106719 ATGCCCATTAGTCCCGGTTG 60.107 55.000 0.00 0.00 0.00 3.77
4644 5439 1.453197 GCCCATTAGTCCCGGTTGG 60.453 63.158 0.00 0.00 0.00 3.77
4645 5440 1.996086 CCCATTAGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
4646 5441 0.393808 CCCATTAGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
4647 5442 0.393808 CCATTAGTCCCGGTTGGTGG 60.394 60.000 0.00 0.00 34.77 4.61
4648 5443 1.029947 CATTAGTCCCGGTTGGTGGC 61.030 60.000 0.00 0.00 34.77 5.01
4649 5444 1.493854 ATTAGTCCCGGTTGGTGGCA 61.494 55.000 0.00 0.00 34.77 4.92
4650 5445 2.400269 TTAGTCCCGGTTGGTGGCAC 62.400 60.000 9.70 9.70 34.77 5.01
4661 5456 4.265056 GTGGCACCAACCGGGACT 62.265 66.667 6.32 0.00 41.15 3.85
4662 5457 2.527123 TGGCACCAACCGGGACTA 60.527 61.111 6.32 0.00 41.15 2.59
4663 5458 2.148052 TGGCACCAACCGGGACTAA 61.148 57.895 6.32 0.00 41.15 2.24
4664 5459 1.073548 GGCACCAACCGGGACTAAA 59.926 57.895 6.32 0.00 41.15 1.85
4665 5460 0.958876 GGCACCAACCGGGACTAAAG 60.959 60.000 6.32 0.00 41.15 1.85
4666 5461 0.958876 GCACCAACCGGGACTAAAGG 60.959 60.000 6.32 0.00 41.15 3.11
4667 5462 0.399075 CACCAACCGGGACTAAAGGT 59.601 55.000 6.32 0.00 41.15 3.50
4669 5464 2.038820 CACCAACCGGGACTAAAGGTTA 59.961 50.000 6.32 0.00 45.52 2.85
4670 5465 2.303890 ACCAACCGGGACTAAAGGTTAG 59.696 50.000 6.32 0.00 45.52 2.34
4671 5466 2.303890 CCAACCGGGACTAAAGGTTAGT 59.696 50.000 6.32 0.32 45.52 2.24
4672 5467 3.593096 CAACCGGGACTAAAGGTTAGTC 58.407 50.000 16.44 16.44 45.52 2.59
4684 5479 2.464782 AGGTTAGTCCTTTAGTCCCGG 58.535 52.381 0.00 0.00 45.67 5.73
4685 5480 2.182827 GGTTAGTCCTTTAGTCCCGGT 58.817 52.381 0.00 0.00 0.00 5.28
4686 5481 2.568956 GGTTAGTCCTTTAGTCCCGGTT 59.431 50.000 0.00 0.00 0.00 4.44
4687 5482 3.593096 GTTAGTCCTTTAGTCCCGGTTG 58.407 50.000 0.00 0.00 0.00 3.77
4688 5483 2.019807 AGTCCTTTAGTCCCGGTTGA 57.980 50.000 0.00 0.00 0.00 3.18
4689 5484 2.547990 AGTCCTTTAGTCCCGGTTGAT 58.452 47.619 0.00 0.00 0.00 2.57
4690 5485 2.236395 AGTCCTTTAGTCCCGGTTGATG 59.764 50.000 0.00 0.00 0.00 3.07
4691 5486 1.065709 TCCTTTAGTCCCGGTTGATGC 60.066 52.381 0.00 0.00 0.00 3.91
4692 5487 1.379527 CTTTAGTCCCGGTTGATGCC 58.620 55.000 0.00 0.00 0.00 4.40
4693 5488 0.693622 TTTAGTCCCGGTTGATGCCA 59.306 50.000 0.00 0.00 0.00 4.92
4694 5489 0.035820 TTAGTCCCGGTTGATGCCAC 60.036 55.000 0.00 0.00 0.00 5.01
4695 5490 1.906105 TAGTCCCGGTTGATGCCACC 61.906 60.000 0.00 0.00 0.00 4.61
4696 5491 3.253061 TCCCGGTTGATGCCACCA 61.253 61.111 0.00 0.00 0.00 4.17
4697 5492 2.282816 CCCGGTTGATGCCACCAA 60.283 61.111 0.00 0.00 0.00 3.67
4698 5493 2.635443 CCCGGTTGATGCCACCAAC 61.635 63.158 0.00 0.00 42.18 3.77
4699 5494 1.603455 CCGGTTGATGCCACCAACT 60.603 57.895 1.19 0.00 42.45 3.16
4700 5495 1.580942 CGGTTGATGCCACCAACTG 59.419 57.895 1.19 0.00 42.45 3.16
4701 5496 1.865788 CGGTTGATGCCACCAACTGG 61.866 60.000 2.53 0.00 43.54 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.663093 AGCACACAACCATCTTTATCCAATTA 59.337 34.615 0.00 0.00 0.00 1.40
35 36 4.651994 CGAAGCACACAACCATCTTTATC 58.348 43.478 0.00 0.00 0.00 1.75
61 62 0.759346 ATTACCCCGGTCTCTGCATC 59.241 55.000 0.00 0.00 0.00 3.91
67 68 1.790818 AAGAGGATTACCCCGGTCTC 58.209 55.000 0.00 0.00 36.73 3.36
102 103 1.067495 TGCACGTCGGTACATCATCAA 60.067 47.619 0.00 0.00 0.00 2.57
128 129 1.639298 GCGTGTCTGACAAGGCATCC 61.639 60.000 21.99 4.39 40.95 3.51
154 155 3.307339 GCCTTGTGGACTGAAGAAGATCT 60.307 47.826 0.00 0.00 34.57 2.75
163 164 0.257328 TTTGTGGCCTTGTGGACTGA 59.743 50.000 3.32 0.00 43.49 3.41
164 165 0.670162 CTTTGTGGCCTTGTGGACTG 59.330 55.000 3.32 0.00 43.49 3.51
167 176 2.969821 ATACTTTGTGGCCTTGTGGA 57.030 45.000 3.32 0.00 34.57 4.02
175 184 6.816640 TCGATAGGCAATATATACTTTGTGGC 59.183 38.462 0.00 0.00 0.00 5.01
204 213 2.094803 CACTAGCCAGAGCATATCCTCG 60.095 54.545 0.00 0.00 43.56 4.63
207 216 1.974236 ACCACTAGCCAGAGCATATCC 59.026 52.381 0.00 0.00 43.56 2.59
209 218 1.974236 GGACCACTAGCCAGAGCATAT 59.026 52.381 0.00 0.00 43.56 1.78
210 219 1.062886 AGGACCACTAGCCAGAGCATA 60.063 52.381 0.00 0.00 43.56 3.14
211 220 0.326048 AGGACCACTAGCCAGAGCAT 60.326 55.000 0.00 0.00 43.56 3.79
212 221 1.079256 AGGACCACTAGCCAGAGCA 59.921 57.895 0.00 0.00 43.56 4.26
213 222 0.972983 TCAGGACCACTAGCCAGAGC 60.973 60.000 0.00 0.00 40.32 4.09
214 223 1.411977 CATCAGGACCACTAGCCAGAG 59.588 57.143 0.00 0.00 0.00 3.35
215 224 1.007118 TCATCAGGACCACTAGCCAGA 59.993 52.381 0.00 0.00 0.00 3.86
216 225 1.489481 TCATCAGGACCACTAGCCAG 58.511 55.000 0.00 0.00 0.00 4.85
217 226 2.042464 GATCATCAGGACCACTAGCCA 58.958 52.381 0.00 0.00 0.00 4.75
218 227 2.324541 AGATCATCAGGACCACTAGCC 58.675 52.381 0.00 0.00 0.00 3.93
219 228 5.537300 TTAAGATCATCAGGACCACTAGC 57.463 43.478 0.00 0.00 0.00 3.42
220 229 7.295322 TCATTAAGATCATCAGGACCACTAG 57.705 40.000 0.00 0.00 0.00 2.57
221 230 7.510343 TCATCATTAAGATCATCAGGACCACTA 59.490 37.037 0.00 0.00 33.72 2.74
222 231 6.328410 TCATCATTAAGATCATCAGGACCACT 59.672 38.462 0.00 0.00 33.72 4.00
223 232 6.528321 TCATCATTAAGATCATCAGGACCAC 58.472 40.000 0.00 0.00 33.72 4.16
224 233 6.752285 TCATCATTAAGATCATCAGGACCA 57.248 37.500 0.00 0.00 33.72 4.02
225 234 6.149142 GCTTCATCATTAAGATCATCAGGACC 59.851 42.308 0.00 0.00 33.72 4.46
226 235 6.149142 GGCTTCATCATTAAGATCATCAGGAC 59.851 42.308 0.00 0.00 33.72 3.85
227 236 6.044054 AGGCTTCATCATTAAGATCATCAGGA 59.956 38.462 0.00 0.00 33.72 3.86
228 237 6.239396 AGGCTTCATCATTAAGATCATCAGG 58.761 40.000 0.00 0.00 33.72 3.86
229 238 6.091034 CGAGGCTTCATCATTAAGATCATCAG 59.909 42.308 0.00 0.00 33.72 2.90
230 239 5.930569 CGAGGCTTCATCATTAAGATCATCA 59.069 40.000 0.00 0.00 33.72 3.07
231 240 5.931146 ACGAGGCTTCATCATTAAGATCATC 59.069 40.000 0.00 0.00 33.72 2.92
232 241 5.699915 CACGAGGCTTCATCATTAAGATCAT 59.300 40.000 0.00 0.00 33.72 2.45
233 242 5.052481 CACGAGGCTTCATCATTAAGATCA 58.948 41.667 0.00 0.00 33.72 2.92
234 243 5.050499 CACACGAGGCTTCATCATTAAGATC 60.050 44.000 0.00 0.00 33.72 2.75
235 244 4.813161 CACACGAGGCTTCATCATTAAGAT 59.187 41.667 0.00 0.00 37.48 2.40
236 245 4.183865 CACACGAGGCTTCATCATTAAGA 58.816 43.478 0.00 0.00 0.00 2.10
237 246 3.242543 GCACACGAGGCTTCATCATTAAG 60.243 47.826 0.00 0.00 0.00 1.85
238 247 2.677836 GCACACGAGGCTTCATCATTAA 59.322 45.455 0.00 0.00 0.00 1.40
239 248 2.279741 GCACACGAGGCTTCATCATTA 58.720 47.619 0.00 0.00 0.00 1.90
240 249 1.089920 GCACACGAGGCTTCATCATT 58.910 50.000 0.00 0.00 0.00 2.57
241 250 0.036105 TGCACACGAGGCTTCATCAT 60.036 50.000 0.00 0.00 0.00 2.45
242 251 0.671472 CTGCACACGAGGCTTCATCA 60.671 55.000 0.00 0.00 0.00 3.07
243 252 0.390340 TCTGCACACGAGGCTTCATC 60.390 55.000 0.00 0.00 0.00 2.92
244 253 0.035317 TTCTGCACACGAGGCTTCAT 59.965 50.000 0.00 0.00 0.00 2.57
245 254 0.601046 CTTCTGCACACGAGGCTTCA 60.601 55.000 0.00 0.00 0.00 3.02
246 255 1.905922 GCTTCTGCACACGAGGCTTC 61.906 60.000 1.83 0.00 39.41 3.86
247 256 1.963338 GCTTCTGCACACGAGGCTT 60.963 57.895 1.83 0.00 39.41 4.35
248 257 2.358003 GCTTCTGCACACGAGGCT 60.358 61.111 1.83 0.00 39.41 4.58
249 258 2.666190 TGCTTCTGCACACGAGGC 60.666 61.111 2.06 2.06 45.31 4.70
250 259 0.390866 ATCTGCTTCTGCACACGAGG 60.391 55.000 0.00 0.00 45.31 4.63
251 260 0.720027 CATCTGCTTCTGCACACGAG 59.280 55.000 0.00 0.00 45.31 4.18
252 261 1.293963 GCATCTGCTTCTGCACACGA 61.294 55.000 0.00 0.00 45.31 4.35
253 262 1.134075 GCATCTGCTTCTGCACACG 59.866 57.895 0.00 0.00 45.31 4.49
300 309 6.722129 AGGTGAGATCTATGATAACTGGGTAC 59.278 42.308 0.00 0.00 0.00 3.34
345 354 0.326264 ACCAGCCTCGCTTCTTCAAT 59.674 50.000 0.00 0.00 36.40 2.57
411 426 7.118496 ACTATGTATGAAAGAGTAAGCAGCT 57.882 36.000 0.00 0.00 0.00 4.24
566 617 2.493278 AGCCAATTTGTGCATCCTGTAC 59.507 45.455 10.96 0.00 33.42 2.90
689 744 4.075682 TCCTTGCAATGTGATAAAACGGA 58.924 39.130 0.00 0.00 0.00 4.69
833 890 3.326880 TCTTAACCCTCCACCTGAACTTC 59.673 47.826 0.00 0.00 0.00 3.01
906 963 9.823098 CTTTCTCAAGAAAATCATCACAACTAG 57.177 33.333 6.64 0.00 42.72 2.57
907 964 8.786898 CCTTTCTCAAGAAAATCATCACAACTA 58.213 33.333 6.64 0.00 42.72 2.24
908 965 7.255730 CCCTTTCTCAAGAAAATCATCACAACT 60.256 37.037 6.64 0.00 42.72 3.16
909 966 6.865205 CCCTTTCTCAAGAAAATCATCACAAC 59.135 38.462 6.64 0.00 42.72 3.32
989 1057 2.191400 AGCTCACCATTCTCTTGGCTA 58.809 47.619 0.00 0.00 40.68 3.93
1384 1452 1.832719 TTCAGGAACGCCGATCCCAA 61.833 55.000 10.02 0.58 37.71 4.12
1839 2085 2.517127 AGGGAGATCCTTTAGGTCGGTA 59.483 50.000 0.00 0.00 45.47 4.02
1984 2270 1.424302 CTCCATGATCCTGAGGGCATT 59.576 52.381 0.00 0.00 0.00 3.56
2092 2378 2.119801 ATGGTCAGCATGGACAGAAC 57.880 50.000 0.00 0.00 39.59 3.01
2304 2590 3.453717 ACCTCATCTGCACATACTCACAT 59.546 43.478 0.00 0.00 0.00 3.21
2777 3516 0.097325 GTTGACGCCGTGTTTTGTCA 59.903 50.000 0.00 0.00 39.42 3.58
2949 3688 2.160822 ATGATTCCCGAAGCTCATCG 57.839 50.000 0.66 0.66 42.37 3.84
3134 3873 5.723295 TCTCTGCTTTGTTTTTCAGCTTTT 58.277 33.333 0.00 0.00 0.00 2.27
3138 3877 4.268644 GGTTTCTCTGCTTTGTTTTTCAGC 59.731 41.667 0.00 0.00 0.00 4.26
3237 3979 2.126463 TTCCAGCGAGCTTCGTCG 60.126 61.111 0.00 0.00 42.81 5.12
3354 4102 1.546923 CAAAGCAATGCCCAGATGTGA 59.453 47.619 0.00 0.00 0.00 3.58
3429 4192 3.371034 TCCGACACCATTATTCTGAGGA 58.629 45.455 0.00 0.00 0.00 3.71
3452 4215 5.163854 CCTGTCTCGTCCATATTGTTTTCAC 60.164 44.000 0.00 0.00 0.00 3.18
3611 4380 2.700897 TGATTCCCCTCCTCGATTTCTC 59.299 50.000 0.00 0.00 0.00 2.87
3759 4535 8.939929 CAGAACTTATGGTCGCATAATTCATAT 58.060 33.333 3.03 0.00 0.00 1.78
3831 4607 2.128771 ATGAACAAATCAGGTCCCCG 57.871 50.000 0.00 0.00 42.53 5.73
4031 4826 1.020861 AACGGTTACGGGCGGAAATC 61.021 55.000 0.00 0.00 46.48 2.17
4042 4837 5.163864 CCGTACCCAAATAGAAAACGGTTAC 60.164 44.000 2.97 0.00 42.50 2.50
4189 4984 9.308000 AGTACTTCAAATTTCACCCATTAATCA 57.692 29.630 0.00 0.00 0.00 2.57
4227 5022 9.692749 ATCTCATAAGCAAAAATAGCATTCATG 57.307 29.630 0.00 0.00 0.00 3.07
4228 5023 9.692749 CATCTCATAAGCAAAAATAGCATTCAT 57.307 29.630 0.00 0.00 0.00 2.57
4390 5185 2.622436 GAAACTGGACGAGGAATGAGG 58.378 52.381 0.00 0.00 0.00 3.86
4392 5187 1.974957 TGGAAACTGGACGAGGAATGA 59.025 47.619 0.00 0.00 0.00 2.57
4401 5196 4.578928 ACACACTAACATTGGAAACTGGAC 59.421 41.667 0.00 0.00 0.00 4.02
4421 5216 3.435671 CCGACCACAAATCCTTAGAACAC 59.564 47.826 0.00 0.00 0.00 3.32
4441 5236 2.054687 TTTGTACTAGTGCACGTCCG 57.945 50.000 13.67 3.74 0.00 4.79
4445 5240 3.606153 GCCTTGTTTTGTACTAGTGCACG 60.606 47.826 13.67 0.00 31.44 5.34
4449 5244 6.371809 TGAAAGCCTTGTTTTGTACTAGTG 57.628 37.500 5.39 0.00 0.00 2.74
4450 5245 6.770785 TGATGAAAGCCTTGTTTTGTACTAGT 59.229 34.615 0.00 0.00 0.00 2.57
4451 5246 7.078228 GTGATGAAAGCCTTGTTTTGTACTAG 58.922 38.462 0.00 0.00 0.00 2.57
4452 5247 6.544197 TGTGATGAAAGCCTTGTTTTGTACTA 59.456 34.615 0.00 0.00 0.00 1.82
4453 5248 5.359576 TGTGATGAAAGCCTTGTTTTGTACT 59.640 36.000 0.00 0.00 0.00 2.73
4454 5249 5.587289 TGTGATGAAAGCCTTGTTTTGTAC 58.413 37.500 0.00 0.00 0.00 2.90
4455 5250 5.221224 CCTGTGATGAAAGCCTTGTTTTGTA 60.221 40.000 0.00 0.00 0.00 2.41
4456 5251 4.441913 CCTGTGATGAAAGCCTTGTTTTGT 60.442 41.667 0.00 0.00 0.00 2.83
4457 5252 4.053295 CCTGTGATGAAAGCCTTGTTTTG 58.947 43.478 0.00 0.00 0.00 2.44
4458 5253 3.070015 CCCTGTGATGAAAGCCTTGTTTT 59.930 43.478 0.00 0.00 0.00 2.43
4459 5254 2.629617 CCCTGTGATGAAAGCCTTGTTT 59.370 45.455 0.00 0.00 0.00 2.83
4460 5255 2.242043 CCCTGTGATGAAAGCCTTGTT 58.758 47.619 0.00 0.00 0.00 2.83
4461 5256 1.915141 CCCTGTGATGAAAGCCTTGT 58.085 50.000 0.00 0.00 0.00 3.16
4462 5257 0.529378 GCCCTGTGATGAAAGCCTTG 59.471 55.000 0.00 0.00 0.00 3.61
4463 5258 0.112995 TGCCCTGTGATGAAAGCCTT 59.887 50.000 0.00 0.00 0.00 4.35
4464 5259 0.112995 TTGCCCTGTGATGAAAGCCT 59.887 50.000 0.00 0.00 0.00 4.58
4465 5260 1.188863 ATTGCCCTGTGATGAAAGCC 58.811 50.000 0.00 0.00 0.00 4.35
4466 5261 4.098349 TGAATATTGCCCTGTGATGAAAGC 59.902 41.667 0.00 0.00 0.00 3.51
4467 5262 5.125900 TGTGAATATTGCCCTGTGATGAAAG 59.874 40.000 0.00 0.00 0.00 2.62
4468 5263 5.015515 TGTGAATATTGCCCTGTGATGAAA 58.984 37.500 0.00 0.00 0.00 2.69
4469 5264 4.598022 TGTGAATATTGCCCTGTGATGAA 58.402 39.130 0.00 0.00 0.00 2.57
4470 5265 4.233632 TGTGAATATTGCCCTGTGATGA 57.766 40.909 0.00 0.00 0.00 2.92
4471 5266 5.524971 AATGTGAATATTGCCCTGTGATG 57.475 39.130 0.00 0.00 0.00 3.07
4472 5267 6.367983 ACTAATGTGAATATTGCCCTGTGAT 58.632 36.000 0.00 0.00 0.00 3.06
4473 5268 5.754782 ACTAATGTGAATATTGCCCTGTGA 58.245 37.500 0.00 0.00 0.00 3.58
4474 5269 5.009010 GGACTAATGTGAATATTGCCCTGTG 59.991 44.000 0.00 0.00 0.00 3.66
4475 5270 5.133221 GGACTAATGTGAATATTGCCCTGT 58.867 41.667 0.00 0.00 0.00 4.00
4476 5271 4.520492 GGGACTAATGTGAATATTGCCCTG 59.480 45.833 0.00 0.00 30.77 4.45
4477 5272 4.729868 GGGACTAATGTGAATATTGCCCT 58.270 43.478 0.00 0.00 30.77 5.19
4478 5273 3.502211 CGGGACTAATGTGAATATTGCCC 59.498 47.826 0.00 0.00 0.00 5.36
4479 5274 3.502211 CCGGGACTAATGTGAATATTGCC 59.498 47.826 0.00 0.00 0.00 4.52
4480 5275 4.134563 ACCGGGACTAATGTGAATATTGC 58.865 43.478 6.32 0.00 0.00 3.56
4481 5276 5.820423 TGAACCGGGACTAATGTGAATATTG 59.180 40.000 6.32 0.00 0.00 1.90
4482 5277 5.996644 TGAACCGGGACTAATGTGAATATT 58.003 37.500 6.32 0.00 0.00 1.28
4483 5278 5.130477 ACTGAACCGGGACTAATGTGAATAT 59.870 40.000 6.32 0.00 0.00 1.28
4484 5279 4.468510 ACTGAACCGGGACTAATGTGAATA 59.531 41.667 6.32 0.00 0.00 1.75
4485 5280 3.263425 ACTGAACCGGGACTAATGTGAAT 59.737 43.478 6.32 0.00 0.00 2.57
4486 5281 2.635915 ACTGAACCGGGACTAATGTGAA 59.364 45.455 6.32 0.00 0.00 3.18
4487 5282 2.232941 GACTGAACCGGGACTAATGTGA 59.767 50.000 6.32 0.00 0.00 3.58
4488 5283 2.028476 TGACTGAACCGGGACTAATGTG 60.028 50.000 6.32 0.00 0.00 3.21
4489 5284 2.028385 GTGACTGAACCGGGACTAATGT 60.028 50.000 6.32 0.00 0.00 2.71
4490 5285 2.618053 GTGACTGAACCGGGACTAATG 58.382 52.381 6.32 0.00 0.00 1.90
4491 5286 1.203994 CGTGACTGAACCGGGACTAAT 59.796 52.381 6.32 0.00 0.00 1.73
4492 5287 0.599558 CGTGACTGAACCGGGACTAA 59.400 55.000 6.32 0.00 0.00 2.24
4493 5288 0.250858 TCGTGACTGAACCGGGACTA 60.251 55.000 6.32 0.00 0.00 2.59
4494 5289 1.111116 TTCGTGACTGAACCGGGACT 61.111 55.000 6.32 0.00 0.00 3.85
4495 5290 0.942884 GTTCGTGACTGAACCGGGAC 60.943 60.000 6.32 0.00 41.88 4.46
4496 5291 1.364901 GTTCGTGACTGAACCGGGA 59.635 57.895 6.32 0.00 41.88 5.14
4497 5292 3.946907 GTTCGTGACTGAACCGGG 58.053 61.111 6.32 0.00 41.88 5.73
4501 5296 0.942884 GTCCCGGTTCGTGACTGAAC 60.943 60.000 0.00 10.38 45.91 3.18
4502 5297 1.111116 AGTCCCGGTTCGTGACTGAA 61.111 55.000 9.22 0.00 42.28 3.02
4503 5298 0.250858 TAGTCCCGGTTCGTGACTGA 60.251 55.000 17.52 2.93 43.49 3.41
4504 5299 0.599558 TTAGTCCCGGTTCGTGACTG 59.400 55.000 17.52 0.00 43.49 3.51
4505 5300 1.203994 CATTAGTCCCGGTTCGTGACT 59.796 52.381 13.76 13.76 45.32 3.41
4506 5301 1.067354 ACATTAGTCCCGGTTCGTGAC 60.067 52.381 0.00 0.00 34.71 3.67
4507 5302 1.067425 CACATTAGTCCCGGTTCGTGA 60.067 52.381 0.00 0.00 0.00 4.35
4508 5303 1.067425 TCACATTAGTCCCGGTTCGTG 60.067 52.381 0.00 0.00 0.00 4.35
4509 5304 1.203994 CTCACATTAGTCCCGGTTCGT 59.796 52.381 0.00 0.00 0.00 3.85
4510 5305 1.922570 CTCACATTAGTCCCGGTTCG 58.077 55.000 0.00 0.00 0.00 3.95
4511 5306 1.066430 TGCTCACATTAGTCCCGGTTC 60.066 52.381 0.00 0.00 0.00 3.62
4512 5307 0.981183 TGCTCACATTAGTCCCGGTT 59.019 50.000 0.00 0.00 0.00 4.44
4513 5308 1.204146 ATGCTCACATTAGTCCCGGT 58.796 50.000 0.00 0.00 30.07 5.28
4514 5309 1.942657 CAATGCTCACATTAGTCCCGG 59.057 52.381 0.00 0.00 44.83 5.73
4515 5310 1.942657 CCAATGCTCACATTAGTCCCG 59.057 52.381 0.00 0.00 44.83 5.14
4516 5311 2.945668 GACCAATGCTCACATTAGTCCC 59.054 50.000 6.20 0.00 44.37 4.46
4519 5314 2.680805 CGGGACCAATGCTCACATTAGT 60.681 50.000 0.00 0.00 44.83 2.24
4520 5315 1.942657 CGGGACCAATGCTCACATTAG 59.057 52.381 0.00 0.00 44.83 1.73
4521 5316 1.557371 TCGGGACCAATGCTCACATTA 59.443 47.619 0.00 0.00 44.83 1.90
4523 5318 0.548031 ATCGGGACCAATGCTCACAT 59.452 50.000 0.00 0.00 38.49 3.21
4524 5319 0.327924 AATCGGGACCAATGCTCACA 59.672 50.000 0.00 0.00 0.00 3.58
4525 5320 1.017387 GAATCGGGACCAATGCTCAC 58.983 55.000 0.00 0.00 0.00 3.51
4526 5321 0.461870 CGAATCGGGACCAATGCTCA 60.462 55.000 0.00 0.00 0.00 4.26
4527 5322 0.462047 ACGAATCGGGACCAATGCTC 60.462 55.000 7.80 0.00 0.00 4.26
4528 5323 0.744414 CACGAATCGGGACCAATGCT 60.744 55.000 7.80 0.00 28.17 3.79
4529 5324 1.721487 CACGAATCGGGACCAATGC 59.279 57.895 7.80 0.00 28.17 3.56
4530 5325 1.721487 GCACGAATCGGGACCAATG 59.279 57.895 9.93 0.00 28.17 2.82
4531 5326 1.813753 CGCACGAATCGGGACCAAT 60.814 57.895 9.93 0.00 28.17 3.16
4532 5327 2.433491 CGCACGAATCGGGACCAA 60.433 61.111 9.93 0.00 28.17 3.67
4533 5328 4.444838 CCGCACGAATCGGGACCA 62.445 66.667 9.93 0.00 42.99 4.02
4535 5330 2.894240 TTAGCCGCACGAATCGGGAC 62.894 60.000 9.93 0.00 46.51 4.46
4536 5331 2.622903 CTTAGCCGCACGAATCGGGA 62.623 60.000 9.93 0.00 46.51 5.14
4537 5332 2.202824 TTAGCCGCACGAATCGGG 60.203 61.111 7.80 3.33 46.51 5.14
4539 5334 2.871427 GCCTTAGCCGCACGAATCG 61.871 63.158 0.00 0.00 0.00 3.34
4540 5335 1.160329 ATGCCTTAGCCGCACGAATC 61.160 55.000 0.00 0.00 39.49 2.52
4541 5336 0.748005 AATGCCTTAGCCGCACGAAT 60.748 50.000 0.00 0.00 39.49 3.34
4542 5337 0.108089 TAATGCCTTAGCCGCACGAA 60.108 50.000 0.00 0.00 39.49 3.85
4543 5338 0.529773 CTAATGCCTTAGCCGCACGA 60.530 55.000 0.00 0.00 39.49 4.35
4544 5339 0.810031 ACTAATGCCTTAGCCGCACG 60.810 55.000 8.50 0.00 39.49 5.34
4545 5340 0.938008 GACTAATGCCTTAGCCGCAC 59.062 55.000 8.50 0.00 39.49 5.34
4546 5341 0.179056 GGACTAATGCCTTAGCCGCA 60.179 55.000 8.50 0.00 38.33 5.69
4547 5342 0.885150 GGGACTAATGCCTTAGCCGC 60.885 60.000 8.50 2.93 38.33 6.53
4548 5343 0.600255 CGGGACTAATGCCTTAGCCG 60.600 60.000 8.50 10.12 38.33 5.52
4549 5344 0.250338 CCGGGACTAATGCCTTAGCC 60.250 60.000 8.50 10.09 38.33 3.93
4550 5345 0.468648 ACCGGGACTAATGCCTTAGC 59.531 55.000 6.32 2.56 38.33 3.09
4551 5346 2.169769 TGAACCGGGACTAATGCCTTAG 59.830 50.000 6.32 7.17 40.25 2.18
4552 5347 2.093341 GTGAACCGGGACTAATGCCTTA 60.093 50.000 6.32 0.00 33.05 2.69
4553 5348 0.988832 TGAACCGGGACTAATGCCTT 59.011 50.000 6.32 0.00 33.05 4.35
4554 5349 0.252197 GTGAACCGGGACTAATGCCT 59.748 55.000 6.32 0.00 33.05 4.75
4555 5350 0.746923 GGTGAACCGGGACTAATGCC 60.747 60.000 6.32 0.00 0.00 4.40
4556 5351 0.252197 AGGTGAACCGGGACTAATGC 59.748 55.000 6.32 0.00 42.08 3.56
4557 5352 2.024176 CAGGTGAACCGGGACTAATG 57.976 55.000 6.32 0.00 42.08 1.90
4566 5361 2.132089 TAAAGGGCCCAGGTGAACCG 62.132 60.000 27.56 0.00 42.08 4.44
4567 5362 0.323451 CTAAAGGGCCCAGGTGAACC 60.323 60.000 27.56 0.00 0.00 3.62
4568 5363 0.404426 ACTAAAGGGCCCAGGTGAAC 59.596 55.000 27.56 0.00 0.00 3.18
4569 5364 0.696501 GACTAAAGGGCCCAGGTGAA 59.303 55.000 27.56 1.43 0.00 3.18
4570 5365 1.205460 GGACTAAAGGGCCCAGGTGA 61.205 60.000 27.56 0.00 37.05 4.02
4571 5366 1.303282 GGACTAAAGGGCCCAGGTG 59.697 63.158 27.56 13.92 37.05 4.00
4572 5367 3.836617 GGACTAAAGGGCCCAGGT 58.163 61.111 27.56 16.46 37.05 4.00
4577 5372 0.323451 CCAACTGGGACTAAAGGGCC 60.323 60.000 0.00 0.00 44.23 5.80
4578 5373 0.404426 ACCAACTGGGACTAAAGGGC 59.596 55.000 0.00 0.00 41.15 5.19
4579 5374 1.886655 GCACCAACTGGGACTAAAGGG 60.887 57.143 0.00 0.00 41.15 3.95
4580 5375 1.534729 GCACCAACTGGGACTAAAGG 58.465 55.000 0.00 0.00 41.15 3.11
4581 5376 1.202879 TGGCACCAACTGGGACTAAAG 60.203 52.381 0.00 0.00 41.15 1.85
4582 5377 0.847373 TGGCACCAACTGGGACTAAA 59.153 50.000 0.00 0.00 41.15 1.85
4583 5378 0.109723 GTGGCACCAACTGGGACTAA 59.890 55.000 6.29 0.00 41.15 2.24
4584 5379 1.758592 GTGGCACCAACTGGGACTA 59.241 57.895 6.29 0.00 41.15 2.59
4585 5380 2.515901 GTGGCACCAACTGGGACT 59.484 61.111 6.29 0.00 41.15 3.85
4586 5381 2.951475 TTCGTGGCACCAACTGGGAC 62.951 60.000 12.86 0.00 41.15 4.46
4587 5382 2.747443 TTCGTGGCACCAACTGGGA 61.747 57.895 12.86 0.00 41.15 4.37
4588 5383 2.203280 TTCGTGGCACCAACTGGG 60.203 61.111 12.86 0.00 44.81 4.45
4589 5384 2.551912 GGTTCGTGGCACCAACTGG 61.552 63.158 23.87 4.96 42.17 4.00
4590 5385 2.892334 CGGTTCGTGGCACCAACTG 61.892 63.158 23.87 21.94 33.36 3.16
4591 5386 2.590575 CGGTTCGTGGCACCAACT 60.591 61.111 23.87 0.00 33.36 3.16
4592 5387 3.656045 CCGGTTCGTGGCACCAAC 61.656 66.667 18.22 18.22 33.36 3.77
4593 5388 4.939368 CCCGGTTCGTGGCACCAA 62.939 66.667 12.86 1.99 33.36 3.67
4596 5391 2.438951 TTAGTCCCGGTTCGTGGCAC 62.439 60.000 7.79 7.79 0.00 5.01
4597 5392 1.756408 TTTAGTCCCGGTTCGTGGCA 61.756 55.000 0.00 0.00 0.00 4.92
4598 5393 1.004679 TTTAGTCCCGGTTCGTGGC 60.005 57.895 0.00 0.00 0.00 5.01
4599 5394 0.390735 CCTTTAGTCCCGGTTCGTGG 60.391 60.000 0.00 0.00 0.00 4.94
4600 5395 0.390735 CCCTTTAGTCCCGGTTCGTG 60.391 60.000 0.00 0.00 0.00 4.35
4601 5396 0.833409 ACCCTTTAGTCCCGGTTCGT 60.833 55.000 0.00 0.00 0.00 3.85
4602 5397 0.390735 CACCCTTTAGTCCCGGTTCG 60.391 60.000 0.00 0.00 0.00 3.95
4603 5398 0.675837 GCACCCTTTAGTCCCGGTTC 60.676 60.000 0.00 0.00 0.00 3.62
4604 5399 1.377612 GCACCCTTTAGTCCCGGTT 59.622 57.895 0.00 0.00 0.00 4.44
4605 5400 2.951101 CGCACCCTTTAGTCCCGGT 61.951 63.158 0.00 0.00 0.00 5.28
4606 5401 1.968050 ATCGCACCCTTTAGTCCCGG 61.968 60.000 0.00 0.00 0.00 5.73
4607 5402 0.810031 CATCGCACCCTTTAGTCCCG 60.810 60.000 0.00 0.00 0.00 5.14
4608 5403 1.095807 GCATCGCACCCTTTAGTCCC 61.096 60.000 0.00 0.00 0.00 4.46
4609 5404 1.095807 GGCATCGCACCCTTTAGTCC 61.096 60.000 0.00 0.00 0.00 3.85
4610 5405 1.095807 GGGCATCGCACCCTTTAGTC 61.096 60.000 0.40 0.00 44.68 2.59
4611 5406 1.077716 GGGCATCGCACCCTTTAGT 60.078 57.895 0.40 0.00 44.68 2.24
4612 5407 3.827634 GGGCATCGCACCCTTTAG 58.172 61.111 0.40 0.00 44.68 1.85
4618 5413 1.166531 GGACTAATGGGCATCGCACC 61.167 60.000 0.00 0.00 0.00 5.01
4619 5414 1.166531 GGGACTAATGGGCATCGCAC 61.167 60.000 0.00 0.00 0.00 5.34
4620 5415 1.148273 GGGACTAATGGGCATCGCA 59.852 57.895 0.00 0.00 0.00 5.10
4621 5416 1.961277 CGGGACTAATGGGCATCGC 60.961 63.158 0.00 0.00 0.00 4.58
4622 5417 1.301716 CCGGGACTAATGGGCATCG 60.302 63.158 0.00 0.00 0.00 3.84
4623 5418 0.182775 AACCGGGACTAATGGGCATC 59.817 55.000 6.32 0.00 0.00 3.91
4624 5419 0.106719 CAACCGGGACTAATGGGCAT 60.107 55.000 6.32 0.00 0.00 4.40
4625 5420 1.301623 CAACCGGGACTAATGGGCA 59.698 57.895 6.32 0.00 0.00 5.36
4626 5421 1.453197 CCAACCGGGACTAATGGGC 60.453 63.158 6.32 0.00 40.01 5.36
4627 5422 0.393808 CACCAACCGGGACTAATGGG 60.394 60.000 6.32 0.00 41.15 4.00
4628 5423 0.393808 CCACCAACCGGGACTAATGG 60.394 60.000 6.32 6.76 41.15 3.16
4629 5424 1.029947 GCCACCAACCGGGACTAATG 61.030 60.000 6.32 0.00 41.15 1.90
4630 5425 1.301954 GCCACCAACCGGGACTAAT 59.698 57.895 6.32 0.00 41.15 1.73
4631 5426 2.148052 TGCCACCAACCGGGACTAA 61.148 57.895 6.32 0.00 41.15 2.24
4632 5427 2.527123 TGCCACCAACCGGGACTA 60.527 61.111 6.32 0.00 41.15 2.59
4633 5428 4.265056 GTGCCACCAACCGGGACT 62.265 66.667 6.32 0.00 41.35 3.85
4644 5439 2.400269 TTAGTCCCGGTTGGTGCCAC 62.400 60.000 0.00 0.00 34.77 5.01
4645 5440 1.706995 TTTAGTCCCGGTTGGTGCCA 61.707 55.000 0.00 0.00 34.77 4.92
4646 5441 0.958876 CTTTAGTCCCGGTTGGTGCC 60.959 60.000 0.00 0.00 34.77 5.01
4647 5442 0.958876 CCTTTAGTCCCGGTTGGTGC 60.959 60.000 0.00 0.00 34.77 5.01
4648 5443 0.399075 ACCTTTAGTCCCGGTTGGTG 59.601 55.000 0.00 0.00 34.77 4.17
4649 5444 1.142936 AACCTTTAGTCCCGGTTGGT 58.857 50.000 0.00 0.00 39.43 3.67
4650 5445 2.303890 ACTAACCTTTAGTCCCGGTTGG 59.696 50.000 0.00 0.00 42.74 3.77
4651 5446 3.593096 GACTAACCTTTAGTCCCGGTTG 58.407 50.000 13.07 0.00 40.94 3.77
4652 5447 3.969287 GACTAACCTTTAGTCCCGGTT 57.031 47.619 13.07 0.00 43.10 4.44
4665 5460 2.182827 ACCGGGACTAAAGGACTAACC 58.817 52.381 6.32 0.00 39.35 2.85
4666 5461 3.259123 TCAACCGGGACTAAAGGACTAAC 59.741 47.826 6.32 0.00 0.00 2.34
4667 5462 3.509442 TCAACCGGGACTAAAGGACTAA 58.491 45.455 6.32 0.00 0.00 2.24
4668 5463 3.173953 TCAACCGGGACTAAAGGACTA 57.826 47.619 6.32 0.00 0.00 2.59
4669 5464 2.019807 TCAACCGGGACTAAAGGACT 57.980 50.000 6.32 0.00 0.00 3.85
4670 5465 2.629051 CATCAACCGGGACTAAAGGAC 58.371 52.381 6.32 0.00 0.00 3.85
4671 5466 1.065709 GCATCAACCGGGACTAAAGGA 60.066 52.381 6.32 0.00 0.00 3.36
4672 5467 1.379527 GCATCAACCGGGACTAAAGG 58.620 55.000 6.32 0.00 0.00 3.11
4673 5468 1.339631 TGGCATCAACCGGGACTAAAG 60.340 52.381 6.32 0.00 0.00 1.85
4674 5469 0.693622 TGGCATCAACCGGGACTAAA 59.306 50.000 6.32 0.00 0.00 1.85
4675 5470 0.035820 GTGGCATCAACCGGGACTAA 60.036 55.000 6.32 0.00 0.00 2.24
4676 5471 1.600107 GTGGCATCAACCGGGACTA 59.400 57.895 6.32 0.00 0.00 2.59
4677 5472 2.351276 GTGGCATCAACCGGGACT 59.649 61.111 6.32 0.00 0.00 3.85
4678 5473 2.750237 GGTGGCATCAACCGGGAC 60.750 66.667 6.32 0.00 0.00 4.46
4679 5474 2.835049 TTGGTGGCATCAACCGGGA 61.835 57.895 9.58 0.00 0.00 5.14
4680 5475 2.282816 TTGGTGGCATCAACCGGG 60.283 61.111 9.58 0.00 0.00 5.73
4681 5476 1.603455 AGTTGGTGGCATCAACCGG 60.603 57.895 33.66 0.00 43.83 5.28
4682 5477 1.580942 CAGTTGGTGGCATCAACCG 59.419 57.895 33.66 23.66 43.83 4.44
4683 5478 1.966762 CCAGTTGGTGGCATCAACC 59.033 57.895 33.66 19.23 43.83 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.